Multiple sequence alignment - TraesCS3D01G123900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G123900 chr3D 100.000 5480 0 0 1 5480 81395392 81389913 0.000000e+00 10120.0
1 TraesCS3D01G123900 chr3D 88.185 1532 77 47 2993 4452 81377854 81376355 0.000000e+00 1731.0
2 TraesCS3D01G123900 chr3D 90.831 818 49 12 2139 2939 81378901 81378093 0.000000e+00 1072.0
3 TraesCS3D01G123900 chr3D 84.668 1024 80 29 868 1868 81380169 81379200 0.000000e+00 950.0
4 TraesCS3D01G123900 chr3D 85.890 163 18 4 1983 2145 81379083 81378926 9.440000e-38 169.0
5 TraesCS3D01G123900 chr3D 90.991 111 9 1 1836 1945 81379198 81379088 1.230000e-31 148.0
6 TraesCS3D01G123900 chr3B 92.925 2205 68 21 466 2624 127325498 127323336 0.000000e+00 3127.0
7 TraesCS3D01G123900 chr3B 94.824 541 18 5 3926 4456 127321070 127320530 0.000000e+00 835.0
8 TraesCS3D01G123900 chr3B 94.258 418 17 3 3639 4055 127321472 127321061 2.790000e-177 632.0
9 TraesCS3D01G123900 chr3B 85.606 528 30 23 3165 3648 127322953 127322428 3.790000e-141 512.0
10 TraesCS3D01G123900 chr3B 94.783 230 12 0 1 230 127332227 127331998 5.220000e-95 359.0
11 TraesCS3D01G123900 chr3B 92.208 231 13 4 228 458 127331643 127331418 6.850000e-84 322.0
12 TraesCS3D01G123900 chr3B 82.804 378 37 17 2675 3041 127323335 127322975 4.120000e-81 313.0
13 TraesCS3D01G123900 chr2D 97.405 1002 18 2 4483 5478 406697251 406698250 0.000000e+00 1700.0
14 TraesCS3D01G123900 chr2D 96.937 1012 22 4 4475 5478 19265424 19266434 0.000000e+00 1688.0
15 TraesCS3D01G123900 chr2D 96.055 1014 26 6 4475 5478 274371018 274370009 0.000000e+00 1639.0
16 TraesCS3D01G123900 chr2D 92.857 56 3 1 4476 4530 476878636 476878581 4.550000e-11 80.5
17 TraesCS3D01G123900 chr3A 90.104 1344 66 33 3165 4456 95540794 95539466 0.000000e+00 1683.0
18 TraesCS3D01G123900 chr3A 83.888 1142 83 44 775 1868 95543047 95541959 0.000000e+00 996.0
19 TraesCS3D01G123900 chr3A 94.499 509 27 1 2138 2646 95541662 95541155 0.000000e+00 784.0
20 TraesCS3D01G123900 chr3A 83.636 385 35 15 2665 3041 95541181 95540817 2.450000e-88 337.0
21 TraesCS3D01G123900 chr3A 87.117 163 15 4 1983 2145 95541842 95541686 4.360000e-41 180.0
22 TraesCS3D01G123900 chr3A 90.991 111 9 1 1836 1945 95541957 95541847 1.230000e-31 148.0
23 TraesCS3D01G123900 chr7D 96.545 1013 23 5 4475 5478 109361814 109362823 0.000000e+00 1666.0
24 TraesCS3D01G123900 chr7D 95.854 1013 32 5 4475 5478 411545310 411546321 0.000000e+00 1629.0
25 TraesCS3D01G123900 chr7D 95.369 1015 27 5 4470 5478 631742930 631741930 0.000000e+00 1596.0
26 TraesCS3D01G123900 chr7D 86.792 53 3 2 164 216 568015062 568015014 7.670000e-04 56.5
27 TraesCS3D01G123900 chr7D 86.792 53 3 1 164 216 568016871 568016823 7.670000e-04 56.5
28 TraesCS3D01G123900 chr5D 96.354 960 27 3 4527 5478 517972253 517971294 0.000000e+00 1572.0
29 TraesCS3D01G123900 chr1B 94.531 1024 36 4 4475 5478 6381669 6380646 0.000000e+00 1563.0
30 TraesCS3D01G123900 chr6B 93.811 1018 42 10 4472 5478 541148834 541149841 0.000000e+00 1511.0
31 TraesCS3D01G123900 chr2B 96.364 55 0 2 4471 4523 119736410 119736356 7.560000e-14 89.8
32 TraesCS3D01G123900 chr7B 77.273 132 25 4 189 317 622640354 622640225 7.610000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G123900 chr3D 81389913 81395392 5479 True 10120.0 10120 100.0000 1 5480 1 chr3D.!!$R1 5479
1 TraesCS3D01G123900 chr3D 81376355 81380169 3814 True 814.0 1731 88.1130 868 4452 5 chr3D.!!$R2 3584
2 TraesCS3D01G123900 chr3B 127320530 127325498 4968 True 1083.8 3127 90.0834 466 4456 5 chr3B.!!$R1 3990
3 TraesCS3D01G123900 chr3B 127331418 127332227 809 True 340.5 359 93.4955 1 458 2 chr3B.!!$R2 457
4 TraesCS3D01G123900 chr2D 406697251 406698250 999 False 1700.0 1700 97.4050 4483 5478 1 chr2D.!!$F2 995
5 TraesCS3D01G123900 chr2D 19265424 19266434 1010 False 1688.0 1688 96.9370 4475 5478 1 chr2D.!!$F1 1003
6 TraesCS3D01G123900 chr2D 274370009 274371018 1009 True 1639.0 1639 96.0550 4475 5478 1 chr2D.!!$R1 1003
7 TraesCS3D01G123900 chr3A 95539466 95543047 3581 True 688.0 1683 88.3725 775 4456 6 chr3A.!!$R1 3681
8 TraesCS3D01G123900 chr7D 109361814 109362823 1009 False 1666.0 1666 96.5450 4475 5478 1 chr7D.!!$F1 1003
9 TraesCS3D01G123900 chr7D 411545310 411546321 1011 False 1629.0 1629 95.8540 4475 5478 1 chr7D.!!$F2 1003
10 TraesCS3D01G123900 chr7D 631741930 631742930 1000 True 1596.0 1596 95.3690 4470 5478 1 chr7D.!!$R1 1008
11 TraesCS3D01G123900 chr5D 517971294 517972253 959 True 1572.0 1572 96.3540 4527 5478 1 chr5D.!!$R1 951
12 TraesCS3D01G123900 chr1B 6380646 6381669 1023 True 1563.0 1563 94.5310 4475 5478 1 chr1B.!!$R1 1003
13 TraesCS3D01G123900 chr6B 541148834 541149841 1007 False 1511.0 1511 93.8110 4472 5478 1 chr6B.!!$F1 1006

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.034059 AAGATCGATGATGGGCCGTC 59.966 55.0 19.12 19.12 0.00 4.79 F
303 304 0.108041 GTGACGAATTTCGCCCCCTA 60.108 55.0 18.24 0.00 45.12 3.53 F
1495 1579 0.387622 CGGTCGCTCAGGTTCGTTTA 60.388 55.0 0.00 0.00 0.00 2.01 F
1577 1664 0.179045 ACGGACTTCTTGTGCAGCTT 60.179 50.0 0.00 0.00 36.78 3.74 F
3312 3764 0.469144 TTGTGGGAGGAAAACAGGGC 60.469 55.0 0.00 0.00 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1547 1634 0.036388 GAAGTCCGTTGATGCCTCCA 60.036 55.000 0.00 0.00 0.00 3.86 R
1557 1644 0.179045 AGCTGCACAAGAAGTCCGTT 60.179 50.000 1.02 0.00 0.00 4.44 R
3301 3752 0.252239 ATTCCCCAGCCCTGTTTTCC 60.252 55.000 0.00 0.00 0.00 3.13 R
3378 3846 3.237268 TGCAGTAACAAAATGGAGGGT 57.763 42.857 0.00 0.00 0.00 4.34 R
5217 6863 0.599558 TCTGCCTTTGAACTGCATGC 59.400 50.000 11.82 11.82 33.97 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.997311 TCCCTAGGGACGAGACCGA 60.997 63.158 27.73 0.38 39.76 4.69
26 27 1.428620 GACGAGACCGACCAGCTAC 59.571 63.158 0.00 0.00 39.50 3.58
46 47 1.590259 GAAGCTCGAGATCACCGCC 60.590 63.158 18.75 0.00 0.00 6.13
76 77 1.154131 CGAGGACGAGCAGTGACAG 60.154 63.158 0.00 0.00 42.66 3.51
94 95 0.689623 AGGAAGATCGATGATGGGCC 59.310 55.000 0.54 0.00 0.00 5.80
97 98 0.034059 AAGATCGATGATGGGCCGTC 59.966 55.000 19.12 19.12 0.00 4.79
118 119 1.439679 GGGAGGTGTTGAATGTCGAC 58.560 55.000 9.11 9.11 0.00 4.20
161 162 2.684104 CTCTCCCCTCGTCCTCCA 59.316 66.667 0.00 0.00 0.00 3.86
177 178 2.028130 CTCCAGCGAGGACTAGACAAT 58.972 52.381 0.00 0.00 43.07 2.71
178 179 1.751351 TCCAGCGAGGACTAGACAATG 59.249 52.381 0.00 0.00 43.07 2.82
227 228 4.753516 TCGAATATCGATATGGCCCATT 57.246 40.909 18.42 2.87 44.82 3.16
228 229 5.097742 TCGAATATCGATATGGCCCATTT 57.902 39.130 18.42 0.00 44.82 2.32
229 230 5.496556 TCGAATATCGATATGGCCCATTTT 58.503 37.500 18.42 0.34 44.82 1.82
230 231 5.943416 TCGAATATCGATATGGCCCATTTTT 59.057 36.000 18.42 0.00 44.82 1.94
231 232 7.106890 TCGAATATCGATATGGCCCATTTTTA 58.893 34.615 18.42 0.00 44.82 1.52
232 233 7.279981 TCGAATATCGATATGGCCCATTTTTAG 59.720 37.037 18.42 1.05 44.82 1.85
233 234 6.699575 ATATCGATATGGCCCATTTTTAGC 57.300 37.500 17.08 0.00 0.00 3.09
234 235 3.826524 TCGATATGGCCCATTTTTAGCA 58.173 40.909 0.00 0.00 0.00 3.49
235 236 4.211125 TCGATATGGCCCATTTTTAGCAA 58.789 39.130 0.00 0.00 0.00 3.91
236 237 4.832266 TCGATATGGCCCATTTTTAGCAAT 59.168 37.500 0.00 0.00 0.00 3.56
237 238 4.925054 CGATATGGCCCATTTTTAGCAATG 59.075 41.667 0.00 0.00 34.39 2.82
238 239 2.399916 TGGCCCATTTTTAGCAATGC 57.600 45.000 0.00 0.00 33.42 3.56
239 240 1.627329 TGGCCCATTTTTAGCAATGCA 59.373 42.857 8.35 0.00 33.42 3.96
240 241 2.039480 TGGCCCATTTTTAGCAATGCAA 59.961 40.909 8.35 0.00 33.42 4.08
241 242 3.080319 GGCCCATTTTTAGCAATGCAAA 58.920 40.909 8.35 3.39 33.42 3.68
242 243 3.505293 GGCCCATTTTTAGCAATGCAAAA 59.495 39.130 8.35 6.97 33.42 2.44
243 244 4.158209 GGCCCATTTTTAGCAATGCAAAAT 59.842 37.500 8.35 9.09 33.42 1.82
244 245 5.096849 GCCCATTTTTAGCAATGCAAAATG 58.903 37.500 24.71 24.71 33.42 2.32
245 246 5.335819 GCCCATTTTTAGCAATGCAAAATGT 60.336 36.000 27.08 13.99 33.42 2.71
246 247 6.316319 CCCATTTTTAGCAATGCAAAATGTC 58.684 36.000 27.08 2.17 33.42 3.06
247 248 6.016718 CCATTTTTAGCAATGCAAAATGTCG 58.983 36.000 27.08 16.95 33.42 4.35
248 249 6.128607 CCATTTTTAGCAATGCAAAATGTCGA 60.129 34.615 27.08 11.71 33.42 4.20
249 250 7.413219 CCATTTTTAGCAATGCAAAATGTCGAT 60.413 33.333 27.08 12.88 33.42 3.59
250 251 7.418840 TTTTTAGCAATGCAAAATGTCGATT 57.581 28.000 8.35 0.00 0.00 3.34
251 252 8.526218 TTTTTAGCAATGCAAAATGTCGATTA 57.474 26.923 8.35 0.00 0.00 1.75
252 253 8.700722 TTTTAGCAATGCAAAATGTCGATTAT 57.299 26.923 8.35 0.00 0.00 1.28
253 254 7.912949 TTAGCAATGCAAAATGTCGATTATC 57.087 32.000 8.35 0.00 0.00 1.75
254 255 4.971830 AGCAATGCAAAATGTCGATTATCG 59.028 37.500 8.35 8.47 42.10 2.92
289 290 8.061857 AGTCGCAAATTATATGTAAATGTGACG 58.938 33.333 23.53 13.77 44.85 4.35
290 291 8.059502 GTCGCAAATTATATGTAAATGTGACGA 58.940 33.333 19.46 12.60 39.12 4.20
291 292 8.604890 TCGCAAATTATATGTAAATGTGACGAA 58.395 29.630 9.20 0.00 32.42 3.85
292 293 9.381027 CGCAAATTATATGTAAATGTGACGAAT 57.619 29.630 0.00 0.00 29.95 3.34
297 298 8.981370 TTATATGTAAATGTGACGAATTTCGC 57.019 30.769 18.24 11.57 45.12 4.70
298 299 4.073169 TGTAAATGTGACGAATTTCGCC 57.927 40.909 18.24 8.46 45.12 5.54
299 300 2.629639 AAATGTGACGAATTTCGCCC 57.370 45.000 18.24 11.04 45.12 6.13
300 301 0.808755 AATGTGACGAATTTCGCCCC 59.191 50.000 18.24 8.73 45.12 5.80
301 302 1.029947 ATGTGACGAATTTCGCCCCC 61.030 55.000 18.24 6.46 45.12 5.40
302 303 1.376812 GTGACGAATTTCGCCCCCT 60.377 57.895 18.24 0.00 45.12 4.79
303 304 0.108041 GTGACGAATTTCGCCCCCTA 60.108 55.000 18.24 0.00 45.12 3.53
304 305 0.834612 TGACGAATTTCGCCCCCTAT 59.165 50.000 18.24 0.00 45.12 2.57
305 306 1.210967 TGACGAATTTCGCCCCCTATT 59.789 47.619 18.24 0.00 45.12 1.73
306 307 2.435069 TGACGAATTTCGCCCCCTATTA 59.565 45.455 18.24 0.00 45.12 0.98
307 308 3.071892 TGACGAATTTCGCCCCCTATTAT 59.928 43.478 18.24 0.00 45.12 1.28
308 309 4.283978 TGACGAATTTCGCCCCCTATTATA 59.716 41.667 18.24 0.00 45.12 0.98
309 310 5.221682 TGACGAATTTCGCCCCCTATTATAA 60.222 40.000 18.24 0.00 45.12 0.98
310 311 5.243207 ACGAATTTCGCCCCCTATTATAAG 58.757 41.667 18.24 0.00 45.12 1.73
311 312 5.012354 ACGAATTTCGCCCCCTATTATAAGA 59.988 40.000 18.24 0.00 45.12 2.10
312 313 6.113411 CGAATTTCGCCCCCTATTATAAGAT 58.887 40.000 5.78 0.00 31.14 2.40
313 314 6.598064 CGAATTTCGCCCCCTATTATAAGATT 59.402 38.462 5.78 0.00 31.14 2.40
314 315 7.201617 CGAATTTCGCCCCCTATTATAAGATTC 60.202 40.741 5.78 0.00 31.14 2.52
315 316 4.730949 TCGCCCCCTATTATAAGATTCG 57.269 45.455 0.00 0.00 0.00 3.34
316 317 4.346730 TCGCCCCCTATTATAAGATTCGA 58.653 43.478 0.00 0.00 0.00 3.71
317 318 4.159135 TCGCCCCCTATTATAAGATTCGAC 59.841 45.833 0.00 0.00 0.00 4.20
318 319 4.159879 CGCCCCCTATTATAAGATTCGACT 59.840 45.833 0.00 0.00 0.00 4.18
319 320 5.662456 GCCCCCTATTATAAGATTCGACTC 58.338 45.833 0.00 0.00 0.00 3.36
320 321 5.422650 GCCCCCTATTATAAGATTCGACTCT 59.577 44.000 0.00 0.00 0.00 3.24
321 322 6.070710 GCCCCCTATTATAAGATTCGACTCTT 60.071 42.308 20.17 20.17 38.90 2.85
322 323 7.527363 GCCCCCTATTATAAGATTCGACTCTTT 60.527 40.741 21.29 12.44 36.82 2.52
323 324 7.819900 CCCCCTATTATAAGATTCGACTCTTTG 59.180 40.741 21.29 7.14 36.82 2.77
324 325 8.585881 CCCCTATTATAAGATTCGACTCTTTGA 58.414 37.037 21.29 6.87 36.82 2.69
325 326 9.982651 CCCTATTATAAGATTCGACTCTTTGAA 57.017 33.333 21.29 15.72 36.82 2.69
335 336 9.273016 AGATTCGACTCTTTGAATTAAGTTTCA 57.727 29.630 0.00 0.00 36.15 2.69
336 337 9.535270 GATTCGACTCTTTGAATTAAGTTTCAG 57.465 33.333 0.00 0.00 36.15 3.02
337 338 8.433421 TTCGACTCTTTGAATTAAGTTTCAGT 57.567 30.769 0.00 0.00 36.97 3.41
338 339 7.851508 TCGACTCTTTGAATTAAGTTTCAGTG 58.148 34.615 0.00 0.00 36.97 3.66
339 340 7.494625 TCGACTCTTTGAATTAAGTTTCAGTGT 59.505 33.333 0.00 0.00 36.97 3.55
340 341 8.122952 CGACTCTTTGAATTAAGTTTCAGTGTT 58.877 33.333 0.00 0.00 36.97 3.32
341 342 9.439537 GACTCTTTGAATTAAGTTTCAGTGTTC 57.560 33.333 0.00 0.00 36.97 3.18
342 343 8.122952 ACTCTTTGAATTAAGTTTCAGTGTTCG 58.877 33.333 0.00 0.00 36.97 3.95
343 344 7.414436 TCTTTGAATTAAGTTTCAGTGTTCGG 58.586 34.615 0.00 0.00 36.97 4.30
344 345 6.687081 TTGAATTAAGTTTCAGTGTTCGGT 57.313 33.333 0.00 0.00 36.97 4.69
345 346 6.687081 TGAATTAAGTTTCAGTGTTCGGTT 57.313 33.333 0.00 0.00 32.07 4.44
346 347 7.090953 TGAATTAAGTTTCAGTGTTCGGTTT 57.909 32.000 0.00 0.00 32.07 3.27
347 348 8.211116 TGAATTAAGTTTCAGTGTTCGGTTTA 57.789 30.769 0.00 0.00 32.07 2.01
348 349 8.124199 TGAATTAAGTTTCAGTGTTCGGTTTAC 58.876 33.333 0.00 0.00 32.07 2.01
349 350 7.797038 ATTAAGTTTCAGTGTTCGGTTTACT 57.203 32.000 0.00 0.00 0.00 2.24
350 351 7.614124 TTAAGTTTCAGTGTTCGGTTTACTT 57.386 32.000 0.00 0.00 0.00 2.24
351 352 6.505044 AAGTTTCAGTGTTCGGTTTACTTT 57.495 33.333 0.00 0.00 0.00 2.66
352 353 6.505044 AGTTTCAGTGTTCGGTTTACTTTT 57.495 33.333 0.00 0.00 0.00 2.27
353 354 7.614124 AGTTTCAGTGTTCGGTTTACTTTTA 57.386 32.000 0.00 0.00 0.00 1.52
354 355 8.217131 AGTTTCAGTGTTCGGTTTACTTTTAT 57.783 30.769 0.00 0.00 0.00 1.40
355 356 8.680001 AGTTTCAGTGTTCGGTTTACTTTTATT 58.320 29.630 0.00 0.00 0.00 1.40
356 357 8.950961 GTTTCAGTGTTCGGTTTACTTTTATTC 58.049 33.333 0.00 0.00 0.00 1.75
357 358 7.789273 TCAGTGTTCGGTTTACTTTTATTCA 57.211 32.000 0.00 0.00 0.00 2.57
358 359 7.632721 TCAGTGTTCGGTTTACTTTTATTCAC 58.367 34.615 0.00 0.00 0.00 3.18
359 360 7.496591 TCAGTGTTCGGTTTACTTTTATTCACT 59.503 33.333 0.00 0.00 0.00 3.41
360 361 7.797123 CAGTGTTCGGTTTACTTTTATTCACTC 59.203 37.037 0.00 0.00 0.00 3.51
361 362 7.713942 AGTGTTCGGTTTACTTTTATTCACTCT 59.286 33.333 0.00 0.00 0.00 3.24
362 363 8.340443 GTGTTCGGTTTACTTTTATTCACTCTT 58.660 33.333 0.00 0.00 0.00 2.85
363 364 8.895737 TGTTCGGTTTACTTTTATTCACTCTTT 58.104 29.630 0.00 0.00 0.00 2.52
364 365 9.166126 GTTCGGTTTACTTTTATTCACTCTTTG 57.834 33.333 0.00 0.00 0.00 2.77
365 366 7.867752 TCGGTTTACTTTTATTCACTCTTTGG 58.132 34.615 0.00 0.00 0.00 3.28
366 367 7.716123 TCGGTTTACTTTTATTCACTCTTTGGA 59.284 33.333 0.00 0.00 0.00 3.53
367 368 8.512138 CGGTTTACTTTTATTCACTCTTTGGAT 58.488 33.333 0.00 0.00 0.00 3.41
368 369 9.626045 GGTTTACTTTTATTCACTCTTTGGATG 57.374 33.333 0.00 0.00 0.00 3.51
369 370 9.626045 GTTTACTTTTATTCACTCTTTGGATGG 57.374 33.333 0.00 0.00 0.00 3.51
370 371 8.934023 TTACTTTTATTCACTCTTTGGATGGT 57.066 30.769 0.00 0.00 0.00 3.55
371 372 7.839680 ACTTTTATTCACTCTTTGGATGGTT 57.160 32.000 0.00 0.00 0.00 3.67
372 373 7.886338 ACTTTTATTCACTCTTTGGATGGTTC 58.114 34.615 0.00 0.00 0.00 3.62
373 374 7.505585 ACTTTTATTCACTCTTTGGATGGTTCA 59.494 33.333 0.00 0.00 0.00 3.18
374 375 7.831691 TTTATTCACTCTTTGGATGGTTCAA 57.168 32.000 0.00 0.00 0.00 2.69
375 376 7.831691 TTATTCACTCTTTGGATGGTTCAAA 57.168 32.000 0.00 0.00 33.67 2.69
376 377 6.923199 ATTCACTCTTTGGATGGTTCAAAT 57.077 33.333 0.00 0.00 34.19 2.32
377 378 6.729690 TTCACTCTTTGGATGGTTCAAATT 57.270 33.333 0.00 0.00 34.19 1.82
378 379 6.088016 TCACTCTTTGGATGGTTCAAATTG 57.912 37.500 0.00 0.00 34.19 2.32
379 380 5.832595 TCACTCTTTGGATGGTTCAAATTGA 59.167 36.000 0.00 0.00 34.19 2.57
380 381 6.323482 TCACTCTTTGGATGGTTCAAATTGAA 59.677 34.615 4.03 4.03 34.19 2.69
381 382 6.985645 CACTCTTTGGATGGTTCAAATTGAAA 59.014 34.615 10.27 0.00 38.22 2.69
382 383 7.658575 CACTCTTTGGATGGTTCAAATTGAAAT 59.341 33.333 10.27 1.22 38.22 2.17
383 384 8.212995 ACTCTTTGGATGGTTCAAATTGAAATT 58.787 29.630 10.27 0.00 38.22 1.82
384 385 9.709495 CTCTTTGGATGGTTCAAATTGAAATTA 57.291 29.630 10.27 0.51 38.22 1.40
385 386 9.709495 TCTTTGGATGGTTCAAATTGAAATTAG 57.291 29.630 10.27 0.98 38.22 1.73
386 387 9.709495 CTTTGGATGGTTCAAATTGAAATTAGA 57.291 29.630 10.27 0.00 38.22 2.10
416 417 6.880822 TTATTTCCGAGAGTACACAAATCG 57.119 37.500 0.00 0.00 0.00 3.34
417 418 2.273370 TCCGAGAGTACACAAATCGC 57.727 50.000 0.00 0.00 32.23 4.58
418 419 0.914551 CCGAGAGTACACAAATCGCG 59.085 55.000 0.00 0.00 36.25 5.87
419 420 1.614385 CGAGAGTACACAAATCGCGT 58.386 50.000 5.77 0.00 32.61 6.01
420 421 2.476686 CCGAGAGTACACAAATCGCGTA 60.477 50.000 5.77 0.00 34.96 4.42
421 422 3.360533 CGAGAGTACACAAATCGCGTAT 58.639 45.455 5.77 0.00 32.61 3.06
422 423 3.417969 CGAGAGTACACAAATCGCGTATC 59.582 47.826 5.77 0.00 32.61 2.24
423 424 4.348656 GAGAGTACACAAATCGCGTATCA 58.651 43.478 5.77 0.00 0.00 2.15
424 425 4.933330 AGAGTACACAAATCGCGTATCAT 58.067 39.130 5.77 0.00 0.00 2.45
425 426 5.348986 AGAGTACACAAATCGCGTATCATT 58.651 37.500 5.77 0.00 0.00 2.57
426 427 5.810587 AGAGTACACAAATCGCGTATCATTT 59.189 36.000 5.77 1.26 0.00 2.32
427 428 6.312918 AGAGTACACAAATCGCGTATCATTTT 59.687 34.615 5.77 0.00 0.00 1.82
428 429 6.837992 AGTACACAAATCGCGTATCATTTTT 58.162 32.000 5.77 0.00 0.00 1.94
474 475 1.673920 GAAAGTTGTCGGAAAGCCACA 59.326 47.619 0.00 0.00 0.00 4.17
475 476 1.981256 AAGTTGTCGGAAAGCCACAT 58.019 45.000 0.00 0.00 0.00 3.21
509 513 3.369052 CCGATTACACCACAGCTCCTAAA 60.369 47.826 0.00 0.00 0.00 1.85
544 548 3.131933 CAGACTCCCCACAAGACTATGAG 59.868 52.174 0.00 0.00 0.00 2.90
547 551 3.515901 ACTCCCCACAAGACTATGAGAAC 59.484 47.826 0.00 0.00 0.00 3.01
549 553 3.260884 TCCCCACAAGACTATGAGAACAC 59.739 47.826 0.00 0.00 0.00 3.32
587 592 4.464244 TCTCCAACTCTGAATCTCGTCATT 59.536 41.667 0.00 0.00 0.00 2.57
800 846 1.004918 CGTGAACCCACTCTCCACC 60.005 63.158 0.00 0.00 41.06 4.61
806 852 0.487772 ACCCACTCTCCACCACTACT 59.512 55.000 0.00 0.00 0.00 2.57
960 1030 2.869354 GGCGGTCGCGCTATATATC 58.131 57.895 5.56 0.00 43.06 1.63
961 1031 0.928908 GGCGGTCGCGCTATATATCG 60.929 60.000 5.56 1.63 43.06 2.92
1022 1093 1.074248 GGGTTTCCCCGCTTTCTCA 59.926 57.895 0.00 0.00 42.41 3.27
1023 1094 0.538746 GGGTTTCCCCGCTTTCTCAA 60.539 55.000 0.00 0.00 42.41 3.02
1033 1104 1.404851 CGCTTTCTCAACTCTCCCCTC 60.405 57.143 0.00 0.00 0.00 4.30
1113 1188 2.586245 CGAGAGAAGCCATGGCCA 59.414 61.111 33.14 8.56 43.17 5.36
1495 1579 0.387622 CGGTCGCTCAGGTTCGTTTA 60.388 55.000 0.00 0.00 0.00 2.01
1519 1604 2.740981 GCGGATCTATCTTCTTGGCATG 59.259 50.000 0.00 0.00 0.00 4.06
1520 1605 3.805108 GCGGATCTATCTTCTTGGCATGT 60.805 47.826 0.00 0.00 0.00 3.21
1521 1606 4.561530 GCGGATCTATCTTCTTGGCATGTA 60.562 45.833 0.00 0.00 0.00 2.29
1522 1607 4.926238 CGGATCTATCTTCTTGGCATGTAC 59.074 45.833 0.00 0.00 0.00 2.90
1523 1608 5.509670 CGGATCTATCTTCTTGGCATGTACA 60.510 44.000 0.00 0.00 0.00 2.90
1547 1634 4.287766 AGCTTCTCCTGTTCGGTTTATT 57.712 40.909 0.00 0.00 0.00 1.40
1553 1640 1.743394 CCTGTTCGGTTTATTGGAGGC 59.257 52.381 0.00 0.00 0.00 4.70
1557 1644 3.013921 GTTCGGTTTATTGGAGGCATCA 58.986 45.455 0.00 0.00 0.00 3.07
1577 1664 0.179045 ACGGACTTCTTGTGCAGCTT 60.179 50.000 0.00 0.00 36.78 3.74
1578 1665 1.070134 ACGGACTTCTTGTGCAGCTTA 59.930 47.619 0.00 0.00 36.78 3.09
1579 1666 1.461127 CGGACTTCTTGTGCAGCTTAC 59.539 52.381 0.00 0.00 36.78 2.34
1580 1667 2.772287 GGACTTCTTGTGCAGCTTACT 58.228 47.619 0.00 0.00 36.96 2.24
1581 1668 2.739379 GGACTTCTTGTGCAGCTTACTC 59.261 50.000 0.00 0.00 36.96 2.59
1582 1669 2.739379 GACTTCTTGTGCAGCTTACTCC 59.261 50.000 0.00 0.00 0.00 3.85
1583 1670 2.370189 ACTTCTTGTGCAGCTTACTCCT 59.630 45.455 0.00 0.00 0.00 3.69
1584 1671 2.751166 TCTTGTGCAGCTTACTCCTC 57.249 50.000 0.00 0.00 0.00 3.71
1585 1672 1.067565 TCTTGTGCAGCTTACTCCTCG 60.068 52.381 0.00 0.00 0.00 4.63
1600 1687 7.043325 GCTTACTCCTCGTATTATTCTTGTGTG 60.043 40.741 0.00 0.00 0.00 3.82
1626 1713 4.563993 CCATTTTCATCCCACTGCAAATGT 60.564 41.667 7.87 0.00 37.77 2.71
1777 1877 4.698201 TCCGGCATTGATTACTTCCATA 57.302 40.909 0.00 0.00 0.00 2.74
1778 1878 5.241403 TCCGGCATTGATTACTTCCATAT 57.759 39.130 0.00 0.00 0.00 1.78
1872 2007 2.691409 TTGGCACCTCGAATCTTAGG 57.309 50.000 0.00 0.00 38.93 2.69
1941 2076 3.554934 TGCCACAAGTTCAGATTCAGTT 58.445 40.909 0.00 0.00 0.00 3.16
2019 2154 6.660094 ACATCAAGTTATTTTAGGGGCGTTTA 59.340 34.615 0.00 0.00 0.00 2.01
2439 2605 4.505390 CGGTAAGTTTTCCCCCAAGAACTA 60.505 45.833 0.00 0.00 32.44 2.24
2632 2809 0.804364 TGCTGTTGGAAGCTATTGCG 59.196 50.000 0.00 0.00 43.90 4.85
2661 2838 8.539770 ACAACTTGTGAGTTTCTAGTGATATG 57.460 34.615 0.00 0.00 43.48 1.78
2663 2840 6.701340 ACTTGTGAGTTTCTAGTGATATGCA 58.299 36.000 0.00 0.00 29.87 3.96
2664 2841 7.334090 ACTTGTGAGTTTCTAGTGATATGCAT 58.666 34.615 3.79 3.79 29.87 3.96
2672 2849 4.677182 TCTAGTGATATGCATGGAGGCTA 58.323 43.478 10.16 4.79 34.04 3.93
2702 2884 7.172190 CAGTCTCAACTTGTGATGTAACAGAAT 59.828 37.037 0.00 0.00 35.07 2.40
2789 2971 5.992217 GTCATCTTTGTCTAACCTTGACACT 59.008 40.000 0.00 0.00 43.13 3.55
2850 3032 5.237344 GGGTCATCATACAAGATGCTGTAAC 59.763 44.000 0.00 0.00 43.94 2.50
2915 3097 5.067805 ACATGAGGTGAGTTCTTTTTCCAAC 59.932 40.000 0.00 0.00 0.00 3.77
2935 3117 6.041511 CCAACAATTGAACATGAACACTTCA 58.958 36.000 13.59 0.00 45.01 3.02
2948 3132 5.200483 TGAACACTTCAGGGAAATGAAACT 58.800 37.500 0.00 0.00 38.66 2.66
2949 3133 5.067674 TGAACACTTCAGGGAAATGAAACTG 59.932 40.000 0.00 0.00 38.66 3.16
2950 3134 4.536765 ACACTTCAGGGAAATGAAACTGT 58.463 39.130 0.00 0.00 38.66 3.55
2952 3136 5.422012 ACACTTCAGGGAAATGAAACTGTTT 59.578 36.000 5.29 5.29 38.66 2.83
2953 3137 5.750067 CACTTCAGGGAAATGAAACTGTTTG 59.250 40.000 11.03 0.00 38.66 2.93
2957 3141 7.452880 TCAGGGAAATGAAACTGTTTGATAG 57.547 36.000 11.03 0.00 0.00 2.08
2959 3143 7.391554 TCAGGGAAATGAAACTGTTTGATAGAG 59.608 37.037 11.03 0.00 0.00 2.43
2960 3144 7.175641 CAGGGAAATGAAACTGTTTGATAGAGT 59.824 37.037 11.03 0.00 30.27 3.24
2967 3158 7.479980 TGAAACTGTTTGATAGAGTTTTGTGG 58.520 34.615 11.03 0.00 46.80 4.17
2968 3159 7.338196 TGAAACTGTTTGATAGAGTTTTGTGGA 59.662 33.333 11.03 0.00 46.80 4.02
2969 3160 7.639113 AACTGTTTGATAGAGTTTTGTGGAA 57.361 32.000 0.00 0.00 37.05 3.53
2971 3162 8.237811 ACTGTTTGATAGAGTTTTGTGGAAAT 57.762 30.769 0.00 0.00 0.00 2.17
2974 3165 6.899393 TTGATAGAGTTTTGTGGAAATGCT 57.101 33.333 0.00 0.00 0.00 3.79
2976 3167 6.913170 TGATAGAGTTTTGTGGAAATGCTTC 58.087 36.000 0.00 0.00 0.00 3.86
2989 3180 5.787380 GGAAATGCTTCCTTGTCTGAAATT 58.213 37.500 0.00 0.00 46.80 1.82
3010 3201 9.129209 GAAATTTTTGTTACCAATCTGTCTAGC 57.871 33.333 0.00 0.00 0.00 3.42
3014 3205 6.985188 TTGTTACCAATCTGTCTAGCAATC 57.015 37.500 0.00 0.00 0.00 2.67
3055 3489 5.905480 AATGTTTTTCGTGGAAATGCTTC 57.095 34.783 0.00 0.00 31.34 3.86
3066 3500 1.888512 GAAATGCTTCCTTGTCTGCCA 59.111 47.619 0.00 0.00 0.00 4.92
3067 3501 2.226962 AATGCTTCCTTGTCTGCCAT 57.773 45.000 0.00 0.00 0.00 4.40
3071 3506 1.742268 GCTTCCTTGTCTGCCATCTTC 59.258 52.381 0.00 0.00 0.00 2.87
3074 3509 1.347707 TCCTTGTCTGCCATCTTCGTT 59.652 47.619 0.00 0.00 0.00 3.85
3090 3525 6.307031 TCTTCGTTGCTAAATGCTTACAAA 57.693 33.333 0.00 0.00 43.37 2.83
3094 3529 4.615912 CGTTGCTAAATGCTTACAAAGGCT 60.616 41.667 0.00 0.00 43.37 4.58
3095 3530 4.439305 TGCTAAATGCTTACAAAGGCTG 57.561 40.909 0.00 0.00 43.37 4.85
3100 3539 1.317613 TGCTTACAAAGGCTGTGTGG 58.682 50.000 20.65 13.35 39.20 4.17
3124 3563 9.802039 TGGTAAATTTAGCACTTATAATAGGGG 57.198 33.333 22.77 0.00 36.35 4.79
3136 3575 9.349713 CACTTATAATAGGGGTGCATCTTTTTA 57.650 33.333 0.00 0.00 0.00 1.52
3147 3586 7.659799 GGGGTGCATCTTTTTATTACAAGTTTT 59.340 33.333 0.00 0.00 0.00 2.43
3212 3660 5.964887 TGACAAAAATTGAAAGCTTTCCG 57.035 34.783 31.14 15.41 36.36 4.30
3219 3667 0.586319 TGAAAGCTTTCCGACTTGCG 59.414 50.000 31.14 0.00 36.36 4.85
3230 3678 1.950472 CGACTTGCGGTTTGTGAATC 58.050 50.000 0.00 0.00 36.03 2.52
3242 3690 6.075415 GCGGTTTGTGAATCGAATATGATTTG 60.075 38.462 0.00 0.00 41.89 2.32
3252 3702 9.374960 GAATCGAATATGATTTGTAGTTCAAGC 57.625 33.333 0.00 0.00 38.65 4.01
3253 3703 7.246674 TCGAATATGATTTGTAGTTCAAGCC 57.753 36.000 0.00 0.00 37.35 4.35
3258 3708 4.081406 TGATTTGTAGTTCAAGCCATGCT 58.919 39.130 0.00 0.00 42.56 3.79
3262 3712 3.808728 TGTAGTTCAAGCCATGCTATCC 58.191 45.455 0.00 0.00 38.25 2.59
3285 3735 6.383147 TCCGAGGTCCTAGTTCTGATTATTTT 59.617 38.462 0.00 0.00 0.00 1.82
3301 3752 5.467035 TTATTTTGGAAAGCTTGTGGGAG 57.533 39.130 0.00 0.00 0.00 4.30
3312 3764 0.469144 TTGTGGGAGGAAAACAGGGC 60.469 55.000 0.00 0.00 0.00 5.19
3313 3765 1.360393 TGTGGGAGGAAAACAGGGCT 61.360 55.000 0.00 0.00 0.00 5.19
3317 3775 1.304464 GAGGAAAACAGGGCTGGGG 60.304 63.158 0.00 0.00 34.19 4.96
3319 3777 1.155155 GGAAAACAGGGCTGGGGAA 59.845 57.895 0.00 0.00 34.19 3.97
3335 3793 5.581126 TGGGGAATTTGATCTTGAATTCG 57.419 39.130 16.39 0.00 41.12 3.34
3368 3835 7.552458 AAATTTTCACTGGTTCCAAATTGAC 57.448 32.000 0.00 0.00 29.56 3.18
3375 3843 2.875933 TGGTTCCAAATTGACGTGAGAC 59.124 45.455 0.00 0.00 0.00 3.36
3377 3845 4.202274 TGGTTCCAAATTGACGTGAGACTA 60.202 41.667 0.00 0.00 0.00 2.59
3378 3846 4.753107 GGTTCCAAATTGACGTGAGACTAA 59.247 41.667 0.00 0.00 0.00 2.24
3379 3847 5.333875 GGTTCCAAATTGACGTGAGACTAAC 60.334 44.000 0.00 0.00 0.00 2.34
3404 3872 6.295011 CCCTCCATTTTGTTACTGCAATGTTA 60.295 38.462 0.00 0.00 0.00 2.41
3555 4038 3.740764 GCATCTGCAGAACTAAGAGAGGG 60.741 52.174 22.50 0.21 41.59 4.30
3692 5168 2.376808 AGAGCCGAAGTCACAATCAG 57.623 50.000 0.00 0.00 0.00 2.90
3701 5177 4.642429 GAAGTCACAATCAGTTACTGGGT 58.358 43.478 12.79 6.03 34.97 4.51
4059 5660 2.983229 GATCACTGCTGATGTGGTCTT 58.017 47.619 0.00 0.00 41.05 3.01
4326 5930 2.289756 GGTTGGTGGTGTGTTTTGGTTT 60.290 45.455 0.00 0.00 0.00 3.27
4430 6047 3.499563 CCCCTCCATTTTGTTGTGACCTA 60.500 47.826 0.00 0.00 0.00 3.08
4456 6073 1.072489 TCTGGTTTATCGTGTTGGCCA 59.928 47.619 0.00 0.00 0.00 5.36
4465 6082 2.695359 TCGTGTTGGCCAAATCTCTAC 58.305 47.619 22.47 7.20 0.00 2.59
4466 6083 2.301870 TCGTGTTGGCCAAATCTCTACT 59.698 45.455 22.47 0.00 0.00 2.57
4467 6084 2.673368 CGTGTTGGCCAAATCTCTACTC 59.327 50.000 22.47 6.61 0.00 2.59
4468 6085 3.010420 GTGTTGGCCAAATCTCTACTCC 58.990 50.000 22.47 3.91 0.00 3.85
4469 6086 2.912956 TGTTGGCCAAATCTCTACTCCT 59.087 45.455 22.47 0.00 0.00 3.69
4470 6087 4.081087 GTGTTGGCCAAATCTCTACTCCTA 60.081 45.833 22.47 0.00 0.00 2.94
4471 6088 4.534500 TGTTGGCCAAATCTCTACTCCTAA 59.466 41.667 22.47 0.00 0.00 2.69
4472 6089 5.191722 TGTTGGCCAAATCTCTACTCCTAAT 59.808 40.000 22.47 0.00 0.00 1.73
4473 6090 5.296151 TGGCCAAATCTCTACTCCTAATG 57.704 43.478 0.61 0.00 0.00 1.90
4474 6091 4.721776 TGGCCAAATCTCTACTCCTAATGT 59.278 41.667 0.61 0.00 0.00 2.71
4475 6092 5.163301 TGGCCAAATCTCTACTCCTAATGTC 60.163 44.000 0.61 0.00 0.00 3.06
4476 6093 5.071115 GGCCAAATCTCTACTCCTAATGTCT 59.929 44.000 0.00 0.00 0.00 3.41
4477 6094 6.220201 GCCAAATCTCTACTCCTAATGTCTC 58.780 44.000 0.00 0.00 0.00 3.36
4478 6095 6.183360 GCCAAATCTCTACTCCTAATGTCTCA 60.183 42.308 0.00 0.00 0.00 3.27
4493 6110 5.590530 ATGTCTCACTCCTAATGTCTCAC 57.409 43.478 0.00 0.00 0.00 3.51
4506 6123 3.238788 TGTCTCACTTGGTAGTCTCCA 57.761 47.619 0.00 0.00 35.49 3.86
4525 6143 5.955355 TCTCCATTCCGGGTTTATTTTCATT 59.045 36.000 0.00 0.00 34.36 2.57
4638 6273 2.303022 TCGATCCTATCCTTCATTGCCC 59.697 50.000 0.00 0.00 0.00 5.36
4647 6282 1.005215 CCTTCATTGCCCACTCCTCTT 59.995 52.381 0.00 0.00 0.00 2.85
4687 6322 3.675563 GATCCGCCGCCGAGATCT 61.676 66.667 0.00 0.00 37.76 2.75
4796 6437 3.336318 CAGCCGAGCATAGCAGCG 61.336 66.667 0.00 0.00 40.15 5.18
5197 6843 0.393820 ACTTCGCCAAACTTCCGGTA 59.606 50.000 0.00 0.00 0.00 4.02
5478 7124 3.621794 GCAATTAGCTTGATTACCTGCG 58.378 45.455 0.00 0.00 41.15 5.18
5479 7125 3.548818 GCAATTAGCTTGATTACCTGCGG 60.549 47.826 0.00 0.00 41.15 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.869454 GCGGTGATCTCGAGCTTCTG 60.869 60.000 7.81 4.56 0.00 3.02
70 71 3.388308 CCATCATCGATCTTCCTGTCAC 58.612 50.000 0.00 0.00 0.00 3.67
76 77 0.671781 CGGCCCATCATCGATCTTCC 60.672 60.000 0.00 0.00 0.00 3.46
94 95 1.019278 CATTCAACACCTCCCCGACG 61.019 60.000 0.00 0.00 0.00 5.12
97 98 1.019278 CGACATTCAACACCTCCCCG 61.019 60.000 0.00 0.00 0.00 5.73
161 162 1.402259 CGACATTGTCTAGTCCTCGCT 59.598 52.381 14.54 0.00 0.00 4.93
177 178 5.008415 GCTAGCTACTACTAACATTCCGACA 59.992 44.000 7.70 0.00 0.00 4.35
178 179 5.008415 TGCTAGCTACTACTAACATTCCGAC 59.992 44.000 17.23 0.00 0.00 4.79
225 226 7.599630 ATCGACATTTTGCATTGCTAAAAAT 57.400 28.000 19.33 15.29 36.93 1.82
226 227 7.418840 AATCGACATTTTGCATTGCTAAAAA 57.581 28.000 19.33 13.90 36.93 1.94
227 228 8.700722 ATAATCGACATTTTGCATTGCTAAAA 57.299 26.923 19.33 17.48 36.93 1.52
228 229 7.165647 CGATAATCGACATTTTGCATTGCTAAA 59.834 33.333 18.10 18.10 43.74 1.85
229 230 6.632434 CGATAATCGACATTTTGCATTGCTAA 59.368 34.615 10.49 5.77 43.74 3.09
230 231 6.018343 TCGATAATCGACATTTTGCATTGCTA 60.018 34.615 10.49 0.00 44.82 3.49
231 232 4.971830 CGATAATCGACATTTTGCATTGCT 59.028 37.500 10.49 0.00 43.74 3.91
232 233 4.969395 TCGATAATCGACATTTTGCATTGC 59.031 37.500 0.46 0.46 44.82 3.56
263 264 8.061857 CGTCACATTTACATATAATTTGCGACT 58.938 33.333 0.00 0.00 0.00 4.18
264 265 8.059502 TCGTCACATTTACATATAATTTGCGAC 58.940 33.333 0.00 0.00 0.00 5.19
265 266 8.132604 TCGTCACATTTACATATAATTTGCGA 57.867 30.769 0.00 0.00 0.00 5.10
266 267 8.760703 TTCGTCACATTTACATATAATTTGCG 57.239 30.769 0.00 0.00 0.00 4.85
271 272 9.594038 GCGAAATTCGTCACATTTACATATAAT 57.406 29.630 17.05 0.00 42.81 1.28
272 273 8.065407 GGCGAAATTCGTCACATTTACATATAA 58.935 33.333 15.55 0.00 45.01 0.98
273 274 7.569297 GGCGAAATTCGTCACATTTACATATA 58.431 34.615 15.55 0.00 45.01 0.86
274 275 6.427150 GGCGAAATTCGTCACATTTACATAT 58.573 36.000 15.55 0.00 45.01 1.78
275 276 5.802064 GGCGAAATTCGTCACATTTACATA 58.198 37.500 15.55 0.00 45.01 2.29
276 277 4.658071 GGCGAAATTCGTCACATTTACAT 58.342 39.130 15.55 0.00 45.01 2.29
277 278 4.073169 GGCGAAATTCGTCACATTTACA 57.927 40.909 15.55 0.00 45.01 2.41
286 287 1.963172 AATAGGGGGCGAAATTCGTC 58.037 50.000 17.05 14.66 44.91 4.20
287 288 3.782656 ATAATAGGGGGCGAAATTCGT 57.217 42.857 17.05 0.00 42.81 3.85
288 289 5.484715 TCTTATAATAGGGGGCGAAATTCG 58.515 41.667 11.47 11.47 43.89 3.34
289 290 7.201617 CGAATCTTATAATAGGGGGCGAAATTC 60.202 40.741 0.00 0.00 0.00 2.17
290 291 6.598064 CGAATCTTATAATAGGGGGCGAAATT 59.402 38.462 0.00 0.00 0.00 1.82
291 292 6.070424 TCGAATCTTATAATAGGGGGCGAAAT 60.070 38.462 0.00 0.00 0.00 2.17
292 293 5.246656 TCGAATCTTATAATAGGGGGCGAAA 59.753 40.000 0.00 0.00 0.00 3.46
293 294 4.773674 TCGAATCTTATAATAGGGGGCGAA 59.226 41.667 0.00 0.00 0.00 4.70
294 295 4.159135 GTCGAATCTTATAATAGGGGGCGA 59.841 45.833 0.00 0.00 0.00 5.54
295 296 4.159879 AGTCGAATCTTATAATAGGGGGCG 59.840 45.833 0.00 0.00 0.00 6.13
296 297 5.422650 AGAGTCGAATCTTATAATAGGGGGC 59.577 44.000 10.08 0.00 0.00 5.80
297 298 7.483580 AAGAGTCGAATCTTATAATAGGGGG 57.516 40.000 25.34 0.00 37.76 5.40
298 299 8.585881 TCAAAGAGTCGAATCTTATAATAGGGG 58.414 37.037 26.56 9.32 38.59 4.79
299 300 9.982651 TTCAAAGAGTCGAATCTTATAATAGGG 57.017 33.333 26.56 10.21 38.59 3.53
309 310 9.273016 TGAAACTTAATTCAAAGAGTCGAATCT 57.727 29.630 10.08 10.08 36.42 2.40
310 311 9.535270 CTGAAACTTAATTCAAAGAGTCGAATC 57.465 33.333 4.34 4.34 38.75 2.52
311 312 9.057089 ACTGAAACTTAATTCAAAGAGTCGAAT 57.943 29.630 0.00 0.00 38.75 3.34
312 313 8.335356 CACTGAAACTTAATTCAAAGAGTCGAA 58.665 33.333 0.00 0.00 38.75 3.71
313 314 7.494625 ACACTGAAACTTAATTCAAAGAGTCGA 59.505 33.333 0.00 0.00 38.75 4.20
314 315 7.630924 ACACTGAAACTTAATTCAAAGAGTCG 58.369 34.615 0.00 0.00 38.75 4.18
315 316 9.439537 GAACACTGAAACTTAATTCAAAGAGTC 57.560 33.333 0.00 0.00 38.75 3.36
316 317 8.122952 CGAACACTGAAACTTAATTCAAAGAGT 58.877 33.333 0.00 0.00 38.75 3.24
317 318 7.587757 CCGAACACTGAAACTTAATTCAAAGAG 59.412 37.037 0.00 0.00 38.75 2.85
318 319 7.066525 ACCGAACACTGAAACTTAATTCAAAGA 59.933 33.333 0.00 0.00 38.75 2.52
319 320 7.193595 ACCGAACACTGAAACTTAATTCAAAG 58.806 34.615 0.00 0.00 38.75 2.77
320 321 7.090953 ACCGAACACTGAAACTTAATTCAAA 57.909 32.000 0.00 0.00 38.75 2.69
321 322 6.687081 ACCGAACACTGAAACTTAATTCAA 57.313 33.333 0.00 0.00 38.75 2.69
322 323 6.687081 AACCGAACACTGAAACTTAATTCA 57.313 33.333 0.00 0.00 37.70 2.57
323 324 8.340443 AGTAAACCGAACACTGAAACTTAATTC 58.660 33.333 0.00 0.00 0.00 2.17
324 325 8.217131 AGTAAACCGAACACTGAAACTTAATT 57.783 30.769 0.00 0.00 0.00 1.40
325 326 7.797038 AGTAAACCGAACACTGAAACTTAAT 57.203 32.000 0.00 0.00 0.00 1.40
326 327 7.614124 AAGTAAACCGAACACTGAAACTTAA 57.386 32.000 0.00 0.00 0.00 1.85
327 328 7.614124 AAAGTAAACCGAACACTGAAACTTA 57.386 32.000 0.00 0.00 0.00 2.24
328 329 6.505044 AAAGTAAACCGAACACTGAAACTT 57.495 33.333 0.00 0.00 0.00 2.66
329 330 6.505044 AAAAGTAAACCGAACACTGAAACT 57.495 33.333 0.00 0.00 0.00 2.66
330 331 8.845942 AATAAAAGTAAACCGAACACTGAAAC 57.154 30.769 0.00 0.00 0.00 2.78
331 332 8.675504 TGAATAAAAGTAAACCGAACACTGAAA 58.324 29.630 0.00 0.00 0.00 2.69
332 333 8.124199 GTGAATAAAAGTAAACCGAACACTGAA 58.876 33.333 0.00 0.00 0.00 3.02
333 334 7.496591 AGTGAATAAAAGTAAACCGAACACTGA 59.503 33.333 0.00 0.00 33.51 3.41
334 335 7.636326 AGTGAATAAAAGTAAACCGAACACTG 58.364 34.615 0.00 0.00 33.51 3.66
335 336 7.713942 AGAGTGAATAAAAGTAAACCGAACACT 59.286 33.333 0.00 0.00 36.62 3.55
336 337 7.858583 AGAGTGAATAAAAGTAAACCGAACAC 58.141 34.615 0.00 0.00 0.00 3.32
337 338 8.441312 AAGAGTGAATAAAAGTAAACCGAACA 57.559 30.769 0.00 0.00 0.00 3.18
338 339 9.166126 CAAAGAGTGAATAAAAGTAAACCGAAC 57.834 33.333 0.00 0.00 0.00 3.95
339 340 8.347035 CCAAAGAGTGAATAAAAGTAAACCGAA 58.653 33.333 0.00 0.00 0.00 4.30
340 341 7.716123 TCCAAAGAGTGAATAAAAGTAAACCGA 59.284 33.333 0.00 0.00 0.00 4.69
341 342 7.867752 TCCAAAGAGTGAATAAAAGTAAACCG 58.132 34.615 0.00 0.00 0.00 4.44
342 343 9.626045 CATCCAAAGAGTGAATAAAAGTAAACC 57.374 33.333 0.00 0.00 0.00 3.27
343 344 9.626045 CCATCCAAAGAGTGAATAAAAGTAAAC 57.374 33.333 0.00 0.00 0.00 2.01
344 345 9.362151 ACCATCCAAAGAGTGAATAAAAGTAAA 57.638 29.630 0.00 0.00 0.00 2.01
345 346 8.934023 ACCATCCAAAGAGTGAATAAAAGTAA 57.066 30.769 0.00 0.00 0.00 2.24
346 347 8.934023 AACCATCCAAAGAGTGAATAAAAGTA 57.066 30.769 0.00 0.00 0.00 2.24
347 348 7.505585 TGAACCATCCAAAGAGTGAATAAAAGT 59.494 33.333 0.00 0.00 0.00 2.66
348 349 7.885297 TGAACCATCCAAAGAGTGAATAAAAG 58.115 34.615 0.00 0.00 0.00 2.27
349 350 7.831691 TGAACCATCCAAAGAGTGAATAAAA 57.168 32.000 0.00 0.00 0.00 1.52
350 351 7.831691 TTGAACCATCCAAAGAGTGAATAAA 57.168 32.000 0.00 0.00 0.00 1.40
351 352 7.831691 TTTGAACCATCCAAAGAGTGAATAA 57.168 32.000 0.00 0.00 0.00 1.40
352 353 8.306038 CAATTTGAACCATCCAAAGAGTGAATA 58.694 33.333 0.00 0.00 37.00 1.75
353 354 6.923199 ATTTGAACCATCCAAAGAGTGAAT 57.077 33.333 0.00 0.00 37.00 2.57
354 355 6.323482 TCAATTTGAACCATCCAAAGAGTGAA 59.677 34.615 0.00 0.00 37.00 3.18
355 356 5.832595 TCAATTTGAACCATCCAAAGAGTGA 59.167 36.000 0.00 0.00 37.00 3.41
356 357 6.088016 TCAATTTGAACCATCCAAAGAGTG 57.912 37.500 0.00 0.00 37.00 3.51
357 358 6.729690 TTCAATTTGAACCATCCAAAGAGT 57.270 33.333 7.74 0.00 37.00 3.24
358 359 8.611654 AATTTCAATTTGAACCATCCAAAGAG 57.388 30.769 11.30 0.00 35.89 2.85
359 360 9.709495 CTAATTTCAATTTGAACCATCCAAAGA 57.291 29.630 11.30 0.00 35.89 2.52
360 361 9.709495 TCTAATTTCAATTTGAACCATCCAAAG 57.291 29.630 11.30 2.42 35.89 2.77
390 391 8.225107 CGATTTGTGTACTCTCGGAAATAAAAA 58.775 33.333 0.00 0.00 0.00 1.94
391 392 7.622672 GCGATTTGTGTACTCTCGGAAATAAAA 60.623 37.037 7.04 0.00 0.00 1.52
392 393 6.183360 GCGATTTGTGTACTCTCGGAAATAAA 60.183 38.462 7.04 0.00 0.00 1.40
393 394 5.290158 GCGATTTGTGTACTCTCGGAAATAA 59.710 40.000 7.04 0.00 0.00 1.40
394 395 4.802039 GCGATTTGTGTACTCTCGGAAATA 59.198 41.667 7.04 0.00 0.00 1.40
395 396 3.617263 GCGATTTGTGTACTCTCGGAAAT 59.383 43.478 7.04 0.67 0.00 2.17
396 397 2.991190 GCGATTTGTGTACTCTCGGAAA 59.009 45.455 7.04 0.00 0.00 3.13
397 398 2.602878 GCGATTTGTGTACTCTCGGAA 58.397 47.619 7.04 0.00 0.00 4.30
398 399 1.466866 CGCGATTTGTGTACTCTCGGA 60.467 52.381 0.00 0.00 0.00 4.55
399 400 0.914551 CGCGATTTGTGTACTCTCGG 59.085 55.000 0.00 0.00 0.00 4.63
400 401 1.614385 ACGCGATTTGTGTACTCTCG 58.386 50.000 15.93 0.00 40.21 4.04
401 402 4.348656 TGATACGCGATTTGTGTACTCTC 58.651 43.478 15.93 0.00 45.74 3.20
402 403 4.365899 TGATACGCGATTTGTGTACTCT 57.634 40.909 15.93 0.00 45.74 3.24
403 404 5.637104 AATGATACGCGATTTGTGTACTC 57.363 39.130 15.93 0.00 45.74 2.59
404 405 6.417191 AAAATGATACGCGATTTGTGTACT 57.583 33.333 15.93 0.00 45.74 2.73
439 440 8.814235 CCGACAACTTTCGTAATATATTTCTGT 58.186 33.333 2.68 0.00 37.29 3.41
440 441 9.027129 TCCGACAACTTTCGTAATATATTTCTG 57.973 33.333 2.68 0.00 37.29 3.02
441 442 9.590451 TTCCGACAACTTTCGTAATATATTTCT 57.410 29.630 2.68 0.00 37.29 2.52
444 445 8.333186 GCTTTCCGACAACTTTCGTAATATATT 58.667 33.333 2.97 2.97 37.29 1.28
445 446 7.042254 GGCTTTCCGACAACTTTCGTAATATAT 60.042 37.037 0.00 0.00 37.29 0.86
446 447 6.256321 GGCTTTCCGACAACTTTCGTAATATA 59.744 38.462 0.00 0.00 37.29 0.86
447 448 5.064325 GGCTTTCCGACAACTTTCGTAATAT 59.936 40.000 0.00 0.00 37.29 1.28
448 449 4.389687 GGCTTTCCGACAACTTTCGTAATA 59.610 41.667 0.00 0.00 37.29 0.98
449 450 3.187842 GGCTTTCCGACAACTTTCGTAAT 59.812 43.478 0.00 0.00 37.29 1.89
450 451 2.545106 GGCTTTCCGACAACTTTCGTAA 59.455 45.455 0.00 0.00 37.29 3.18
451 452 2.137523 GGCTTTCCGACAACTTTCGTA 58.862 47.619 0.00 0.00 37.29 3.43
452 453 0.942252 GGCTTTCCGACAACTTTCGT 59.058 50.000 0.00 0.00 37.29 3.85
453 454 0.941542 TGGCTTTCCGACAACTTTCG 59.058 50.000 0.00 0.00 38.80 3.46
454 455 1.673920 TGTGGCTTTCCGACAACTTTC 59.326 47.619 0.00 0.00 34.14 2.62
455 456 1.757682 TGTGGCTTTCCGACAACTTT 58.242 45.000 0.00 0.00 34.14 2.66
456 457 1.981256 ATGTGGCTTTCCGACAACTT 58.019 45.000 0.00 0.00 34.14 2.66
457 458 2.851263 TATGTGGCTTTCCGACAACT 57.149 45.000 0.00 0.00 34.14 3.16
458 459 3.365969 CCTTTATGTGGCTTTCCGACAAC 60.366 47.826 0.00 0.00 34.14 3.32
459 460 2.817258 CCTTTATGTGGCTTTCCGACAA 59.183 45.455 0.00 0.00 34.14 3.18
460 461 2.039216 TCCTTTATGTGGCTTTCCGACA 59.961 45.455 0.00 0.00 34.14 4.35
461 462 2.706890 TCCTTTATGTGGCTTTCCGAC 58.293 47.619 0.00 0.00 34.14 4.79
462 463 3.343617 CTTCCTTTATGTGGCTTTCCGA 58.656 45.455 0.00 0.00 34.14 4.55
463 464 2.159379 GCTTCCTTTATGTGGCTTTCCG 60.159 50.000 0.00 0.00 34.14 4.30
464 465 3.092301 AGCTTCCTTTATGTGGCTTTCC 58.908 45.455 0.00 0.00 0.00 3.13
474 475 5.129815 TGGTGTAATCGGTAGCTTCCTTTAT 59.870 40.000 7.87 0.00 0.00 1.40
475 476 4.467082 TGGTGTAATCGGTAGCTTCCTTTA 59.533 41.667 7.87 3.13 0.00 1.85
509 513 3.891977 GGGGAGTCTGCTTTCTTCTTTTT 59.108 43.478 0.00 0.00 0.00 1.94
524 528 3.366396 TCTCATAGTCTTGTGGGGAGTC 58.634 50.000 0.00 0.00 0.00 3.36
544 548 0.683504 TCCTCCGGAGCTAGGTGTTC 60.684 60.000 26.87 0.00 34.30 3.18
547 551 2.346597 GATCCTCCGGAGCTAGGTG 58.653 63.158 26.87 11.39 34.95 4.00
587 592 2.872732 AGTTTCAGAGTCGTGGACCTA 58.127 47.619 0.00 0.00 32.18 3.08
684 710 3.345808 GCGTGCCGAGTGAAGCAA 61.346 61.111 0.00 0.00 41.48 3.91
685 711 4.600576 TGCGTGCCGAGTGAAGCA 62.601 61.111 0.00 0.00 36.44 3.91
800 846 1.226603 GGCGCTCGTGGTAGTAGTG 60.227 63.158 7.64 0.00 0.00 2.74
1013 1084 0.610687 AGGGGAGAGTTGAGAAAGCG 59.389 55.000 0.00 0.00 0.00 4.68
1099 1174 2.048603 GTGGTGGCCATGGCTTCTC 61.049 63.158 34.70 19.38 41.60 2.87
1338 1422 2.281484 GGCGGACTGGTTGAAGCA 60.281 61.111 0.00 0.00 0.00 3.91
1481 1565 0.438830 CGCTGTAAACGAACCTGAGC 59.561 55.000 0.00 0.00 0.00 4.26
1495 1579 2.224161 GCCAAGAAGATAGATCCGCTGT 60.224 50.000 0.00 0.00 0.00 4.40
1523 1608 1.926108 ACCGAACAGGAGAAGCTACT 58.074 50.000 0.00 0.00 45.00 2.57
1547 1634 0.036388 GAAGTCCGTTGATGCCTCCA 60.036 55.000 0.00 0.00 0.00 3.86
1553 1640 1.872952 TGCACAAGAAGTCCGTTGATG 59.127 47.619 0.00 0.00 0.00 3.07
1557 1644 0.179045 AGCTGCACAAGAAGTCCGTT 60.179 50.000 1.02 0.00 0.00 4.44
1577 1664 6.127563 TGCACACAAGAATAATACGAGGAGTA 60.128 38.462 0.00 0.00 40.03 2.59
1578 1665 5.109903 GCACACAAGAATAATACGAGGAGT 58.890 41.667 0.00 0.00 0.00 3.85
1579 1666 5.005779 GTGCACACAAGAATAATACGAGGAG 59.994 44.000 13.17 0.00 0.00 3.69
1580 1667 4.868171 GTGCACACAAGAATAATACGAGGA 59.132 41.667 13.17 0.00 0.00 3.71
1581 1668 4.034048 GGTGCACACAAGAATAATACGAGG 59.966 45.833 20.43 0.00 0.00 4.63
1582 1669 4.629634 TGGTGCACACAAGAATAATACGAG 59.370 41.667 20.43 0.00 0.00 4.18
1583 1670 4.570930 TGGTGCACACAAGAATAATACGA 58.429 39.130 20.43 0.00 0.00 3.43
1584 1671 4.937696 TGGTGCACACAAGAATAATACG 57.062 40.909 20.43 0.00 0.00 3.06
1585 1672 7.812191 TGAAAATGGTGCACACAAGAATAATAC 59.188 33.333 20.43 0.00 0.00 1.89
1600 1687 1.404583 GCAGTGGGATGAAAATGGTGC 60.405 52.381 0.00 0.00 0.00 5.01
1686 1773 1.318576 ACTGCAAAAGGGGAACGAAG 58.681 50.000 0.00 0.00 0.00 3.79
1777 1877 1.296002 GGCCGGGAAGGGGAATATAT 58.704 55.000 2.18 0.00 41.48 0.86
1778 1878 1.196104 CGGCCGGGAAGGGGAATATA 61.196 60.000 20.10 0.00 41.48 0.86
1872 2007 5.646360 TGAGAAATCAACCTATTTCGGGAAC 59.354 40.000 0.00 0.00 46.10 3.62
1941 2076 3.916359 TGTACACAAGAAAGGGACACA 57.084 42.857 0.00 0.00 0.00 3.72
2019 2154 5.535333 TCTAGACCGTTGAATCGAAAAAGT 58.465 37.500 0.00 0.00 0.00 2.66
2439 2605 4.590222 AGAAAAGTTGCAACAATCCCAGAT 59.410 37.500 30.11 4.32 0.00 2.90
2611 2777 2.613595 CGCAATAGCTTCCAACAGCATA 59.386 45.455 0.00 0.00 42.84 3.14
2659 2836 1.133575 ACTGCAATAGCCTCCATGCAT 60.134 47.619 0.00 0.00 46.59 3.96
2661 2838 0.950116 GACTGCAATAGCCTCCATGC 59.050 55.000 0.00 0.00 41.13 4.06
2663 2840 2.121948 TGAGACTGCAATAGCCTCCAT 58.878 47.619 0.00 0.00 41.13 3.41
2664 2841 1.571955 TGAGACTGCAATAGCCTCCA 58.428 50.000 0.00 0.00 41.13 3.86
2672 2849 4.139786 ACATCACAAGTTGAGACTGCAAT 58.860 39.130 10.54 0.00 37.77 3.56
2702 2884 7.001674 TGCACCCTCAAGAAAACTTCTAAATA 58.998 34.615 0.00 0.00 39.61 1.40
2760 2942 6.262273 TCAAGGTTAGACAAAGATGACAAACC 59.738 38.462 0.00 0.00 36.26 3.27
2776 2958 8.012957 AGGATCATACTTAGTGTCAAGGTTAG 57.987 38.462 0.00 0.00 0.00 2.34
2789 2971 7.310671 GGCTGTATCATGGAAGGATCATACTTA 60.311 40.741 0.00 0.00 36.42 2.24
2850 3032 1.318158 GCCCTTGGACAATCTGGCAG 61.318 60.000 8.58 8.58 38.73 4.85
2915 3097 5.009911 TCCCTGAAGTGTTCATGTTCAATTG 59.990 40.000 0.00 0.00 39.30 2.32
2935 3117 7.234355 ACTCTATCAAACAGTTTCATTTCCCT 58.766 34.615 0.00 0.00 0.00 4.20
2948 3132 6.922957 GCATTTCCACAAAACTCTATCAAACA 59.077 34.615 0.00 0.00 0.00 2.83
2949 3133 7.147976 AGCATTTCCACAAAACTCTATCAAAC 58.852 34.615 0.00 0.00 0.00 2.93
2950 3134 7.288810 AGCATTTCCACAAAACTCTATCAAA 57.711 32.000 0.00 0.00 0.00 2.69
2952 3136 6.899393 AAGCATTTCCACAAAACTCTATCA 57.101 33.333 0.00 0.00 0.00 2.15
2967 3158 7.719778 AAAATTTCAGACAAGGAAGCATTTC 57.280 32.000 0.00 0.00 0.00 2.17
2968 3159 7.553760 ACAAAAATTTCAGACAAGGAAGCATTT 59.446 29.630 0.00 0.00 0.00 2.32
2969 3160 7.049754 ACAAAAATTTCAGACAAGGAAGCATT 58.950 30.769 0.00 0.00 0.00 3.56
2971 3162 5.976458 ACAAAAATTTCAGACAAGGAAGCA 58.024 33.333 0.00 0.00 0.00 3.91
3055 3489 1.466167 CAACGAAGATGGCAGACAAGG 59.534 52.381 0.00 0.00 0.00 3.61
3062 3496 2.159393 GCATTTAGCAACGAAGATGGCA 60.159 45.455 0.00 0.00 44.79 4.92
3066 3500 7.023575 CTTTGTAAGCATTTAGCAACGAAGAT 58.976 34.615 13.14 0.00 45.98 2.40
3067 3501 6.370593 CTTTGTAAGCATTTAGCAACGAAGA 58.629 36.000 13.14 0.00 45.98 2.87
3071 3506 8.915600 ACAGCCTTTGTAAGCATTTAGCAACG 62.916 42.308 0.00 0.00 41.90 4.10
3074 3509 3.826157 ACAGCCTTTGTAAGCATTTAGCA 59.174 39.130 0.00 0.00 41.90 3.49
3090 3525 3.506067 GTGCTAAATTTACCACACAGCCT 59.494 43.478 15.68 0.00 0.00 4.58
3117 3556 8.602472 TTGTAATAAAAAGATGCACCCCTATT 57.398 30.769 0.00 0.00 0.00 1.73
3121 3560 6.280855 ACTTGTAATAAAAAGATGCACCCC 57.719 37.500 0.00 0.00 0.00 4.95
3198 3646 2.350772 CGCAAGTCGGAAAGCTTTCAAT 60.351 45.455 33.88 15.99 38.92 2.57
3199 3647 1.002900 CGCAAGTCGGAAAGCTTTCAA 60.003 47.619 33.88 21.63 38.92 2.69
3212 3660 1.529438 TCGATTCACAAACCGCAAGTC 59.471 47.619 0.00 0.00 0.00 3.01
3219 3667 9.438291 CTACAAATCATATTCGATTCACAAACC 57.562 33.333 0.00 0.00 34.49 3.27
3226 3674 9.374960 GCTTGAACTACAAATCATATTCGATTC 57.625 33.333 0.00 0.00 38.08 2.52
3230 3678 7.015226 TGGCTTGAACTACAAATCATATTCG 57.985 36.000 0.00 0.00 38.08 3.34
3242 3690 2.802816 CGGATAGCATGGCTTGAACTAC 59.197 50.000 4.32 0.00 40.44 2.73
3252 3702 1.821753 CTAGGACCTCGGATAGCATGG 59.178 57.143 0.00 0.00 0.00 3.66
3253 3703 2.520069 ACTAGGACCTCGGATAGCATG 58.480 52.381 0.00 0.00 0.00 4.06
3258 3708 4.726035 ATCAGAACTAGGACCTCGGATA 57.274 45.455 0.00 0.00 0.00 2.59
3262 3712 6.480320 CCAAAATAATCAGAACTAGGACCTCG 59.520 42.308 0.00 0.00 0.00 4.63
3285 3735 0.850100 TTCCTCCCACAAGCTTTCCA 59.150 50.000 0.00 0.00 0.00 3.53
3301 3752 0.252239 ATTCCCCAGCCCTGTTTTCC 60.252 55.000 0.00 0.00 0.00 3.13
3312 3764 5.126061 ACGAATTCAAGATCAAATTCCCCAG 59.874 40.000 16.31 9.19 38.21 4.45
3313 3765 5.016173 ACGAATTCAAGATCAAATTCCCCA 58.984 37.500 16.31 0.00 38.21 4.96
3317 3775 5.289434 GGGCAACGAATTCAAGATCAAATTC 59.711 40.000 6.22 13.87 38.13 2.17
3319 3777 4.381932 GGGGCAACGAATTCAAGATCAAAT 60.382 41.667 6.22 0.00 37.60 2.32
3335 3793 3.323691 ACCAGTGAAAATTTAGGGGCAAC 59.676 43.478 0.00 0.00 0.00 4.17
3368 3835 3.611766 AAATGGAGGGTTAGTCTCACG 57.388 47.619 0.00 0.00 33.18 4.35
3375 3843 4.764823 TGCAGTAACAAAATGGAGGGTTAG 59.235 41.667 0.00 0.00 0.00 2.34
3377 3845 3.571590 TGCAGTAACAAAATGGAGGGTT 58.428 40.909 0.00 0.00 0.00 4.11
3378 3846 3.237268 TGCAGTAACAAAATGGAGGGT 57.763 42.857 0.00 0.00 0.00 4.34
3379 3847 4.021192 ACATTGCAGTAACAAAATGGAGGG 60.021 41.667 0.00 0.00 34.92 4.30
3404 3872 4.757149 GCCATCGGCTAATCTTTCTGTTAT 59.243 41.667 0.00 0.00 46.69 1.89
3428 3898 9.407380 TGCATTAGTTATAAAATGTCAGTCCAT 57.593 29.630 10.24 0.00 35.86 3.41
4059 5660 0.182061 GCTCCTGCCATCATCCTTGA 59.818 55.000 0.00 0.00 36.00 3.02
4326 5930 3.878086 ACTAAACGACGACGACTAACA 57.122 42.857 15.32 0.00 42.66 2.41
4430 6047 1.544691 ACACGATAAACCAGAGCGTCT 59.455 47.619 0.00 0.00 32.27 4.18
4456 6073 7.286775 GGAGTGAGACATTAGGAGTAGAGATTT 59.713 40.741 0.00 0.00 0.00 2.17
4465 6082 6.549364 AGACATTAGGAGTGAGACATTAGGAG 59.451 42.308 0.00 0.00 0.00 3.69
4466 6083 6.436027 AGACATTAGGAGTGAGACATTAGGA 58.564 40.000 0.00 0.00 0.00 2.94
4467 6084 6.322456 TGAGACATTAGGAGTGAGACATTAGG 59.678 42.308 0.00 0.00 0.00 2.69
4468 6085 7.068103 AGTGAGACATTAGGAGTGAGACATTAG 59.932 40.741 0.00 0.00 0.00 1.73
4469 6086 6.892456 AGTGAGACATTAGGAGTGAGACATTA 59.108 38.462 0.00 0.00 0.00 1.90
4470 6087 5.719085 AGTGAGACATTAGGAGTGAGACATT 59.281 40.000 0.00 0.00 0.00 2.71
4471 6088 5.268387 AGTGAGACATTAGGAGTGAGACAT 58.732 41.667 0.00 0.00 0.00 3.06
4472 6089 4.667573 AGTGAGACATTAGGAGTGAGACA 58.332 43.478 0.00 0.00 0.00 3.41
4473 6090 5.406649 CAAGTGAGACATTAGGAGTGAGAC 58.593 45.833 0.00 0.00 0.00 3.36
4474 6091 4.464244 CCAAGTGAGACATTAGGAGTGAGA 59.536 45.833 0.00 0.00 0.00 3.27
4475 6092 4.221703 ACCAAGTGAGACATTAGGAGTGAG 59.778 45.833 0.00 0.00 0.00 3.51
4476 6093 4.160329 ACCAAGTGAGACATTAGGAGTGA 58.840 43.478 0.00 0.00 0.00 3.41
4477 6094 4.543590 ACCAAGTGAGACATTAGGAGTG 57.456 45.455 0.00 0.00 0.00 3.51
4478 6095 5.334421 ACTACCAAGTGAGACATTAGGAGT 58.666 41.667 0.00 0.00 33.57 3.85
4493 6110 1.139058 CCCGGAATGGAGACTACCAAG 59.861 57.143 0.73 0.00 43.47 3.61
4506 6123 5.719563 AGTGGAATGAAAATAAACCCGGAAT 59.280 36.000 0.73 0.00 0.00 3.01
4525 6143 3.405823 AAACCGGACGAAAATAGTGGA 57.594 42.857 9.46 0.00 0.00 4.02
4638 6273 3.307506 AGAGATGGGATCAAGAGGAGTG 58.692 50.000 0.00 0.00 0.00 3.51
4647 6282 4.767409 CGTATTGGAGTAGAGATGGGATCA 59.233 45.833 0.00 0.00 0.00 2.92
4687 6322 4.193334 CAGCGGCGGATCGTCTCA 62.193 66.667 9.78 0.00 0.00 3.27
4888 6529 2.364317 CCCTCCTCCGCCAGAGAA 60.364 66.667 0.00 0.00 46.50 2.87
5217 6863 0.599558 TCTGCCTTTGAACTGCATGC 59.400 50.000 11.82 11.82 33.97 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.