Multiple sequence alignment - TraesCS3D01G123700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G123700 chr3D 100.000 5133 0 0 1 5133 81375921 81370789 0.000000e+00 9479
1 TraesCS3D01G123700 chr3D 93.387 741 36 9 1441 2179 81382236 81381507 0.000000e+00 1085
2 TraesCS3D01G123700 chr3D 94.920 689 24 6 2407 3091 81381513 81380832 0.000000e+00 1068
3 TraesCS3D01G123700 chr3D 85.127 632 57 21 703 1318 81382940 81382330 3.400000e-171 612
4 TraesCS3D01G123700 chr3B 90.370 2160 145 37 2987 5128 127298954 127296840 0.000000e+00 2778
5 TraesCS3D01G123700 chr3B 90.734 572 35 8 2428 2986 127299380 127298814 0.000000e+00 747
6 TraesCS3D01G123700 chr3B 93.418 471 26 4 970 1440 127300576 127300111 0.000000e+00 693
7 TraesCS3D01G123700 chr3B 83.112 752 57 30 1441 2179 127300083 127299389 5.640000e-174 621
8 TraesCS3D01G123700 chr3B 92.677 396 17 4 564 957 127301730 127301345 1.250000e-155 560
9 TraesCS3D01G123700 chr3B 91.453 351 22 4 184 531 127302145 127301800 4.650000e-130 475
10 TraesCS3D01G123700 chr3B 95.775 71 3 0 459 529 127301802 127301732 1.170000e-21 115
11 TraesCS3D01G123700 chr3A 85.856 1909 135 61 3293 5133 95536236 95534395 0.000000e+00 1905
12 TraesCS3D01G123700 chr3A 84.873 866 90 22 488 1335 95538418 95537576 0.000000e+00 835
13 TraesCS3D01G123700 chr3A 91.463 492 29 7 2504 2986 95536815 95536328 0.000000e+00 664
14 TraesCS3D01G123700 chr3A 84.806 645 56 14 1536 2162 95537429 95536809 1.220000e-170 610
15 TraesCS3D01G123700 chr3A 82.891 339 44 8 156 489 95538985 95538656 5.030000e-75 292
16 TraesCS3D01G123700 chr1D 87.405 262 26 4 2176 2432 226827329 226827588 1.400000e-75 294
17 TraesCS3D01G123700 chr2B 91.192 193 17 0 2220 2412 305325551 305325359 3.940000e-66 263
18 TraesCS3D01G123700 chr4B 86.364 242 29 2 2176 2413 48904894 48905135 1.420000e-65 261
19 TraesCS3D01G123700 chr5B 85.484 248 25 7 2175 2412 618254976 618255222 1.100000e-61 248
20 TraesCS3D01G123700 chr4A 85.246 244 31 3 2174 2413 568617755 568617513 3.970000e-61 246
21 TraesCS3D01G123700 chr2D 84.615 247 33 3 2176 2419 34332008 34332252 1.850000e-59 241
22 TraesCS3D01G123700 chr5A 84.937 239 32 2 2177 2412 689612342 689612579 6.640000e-59 239
23 TraesCS3D01G123700 chr5A 83.465 254 30 11 2167 2413 651989230 651988982 5.170000e-55 226
24 TraesCS3D01G123700 chr7A 83.871 248 33 3 2172 2415 152549242 152549486 4.000000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G123700 chr3D 81370789 81375921 5132 True 9479.000000 9479 100.000000 1 5133 1 chr3D.!!$R1 5132
1 TraesCS3D01G123700 chr3D 81380832 81382940 2108 True 921.666667 1085 91.144667 703 3091 3 chr3D.!!$R2 2388
2 TraesCS3D01G123700 chr3B 127296840 127302145 5305 True 855.571429 2778 91.077000 184 5128 7 chr3B.!!$R1 4944
3 TraesCS3D01G123700 chr3A 95534395 95538985 4590 True 861.200000 1905 85.977800 156 5133 5 chr3A.!!$R1 4977

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.033366 TGTGTCACGACATGGTCTGG 59.967 55.0 2.72 0.0 43.97 3.86 F
64 65 0.035056 AAGAAACATCGCCCAGGAGG 60.035 55.0 0.00 0.0 39.47 4.30 F
786 1040 0.250467 TTGTCACTGCTCTCTTGGCC 60.250 55.0 0.00 0.0 0.00 5.36 F
1530 2602 0.251916 CCGTTGGTTGCCTGATCCTA 59.748 55.0 0.00 0.0 0.00 2.94 F
2402 3491 0.177373 GGGGCTAGTAAACCAGGACG 59.823 60.0 0.00 0.0 0.00 4.79 F
3160 4263 0.038166 TCCACATTCTTGGCAGGGTC 59.962 55.0 0.00 0.0 36.48 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 2431 0.251916 TGAGTCGCGGGATGGAATTT 59.748 50.0 6.13 0.00 0.00 1.82 R
1819 2892 0.319405 AGGGTACGGTAACTGTGCAC 59.681 55.0 10.75 10.75 31.56 4.57 R
2383 3472 0.177373 CGTCCTGGTTTACTAGCCCC 59.823 60.0 0.00 0.00 0.00 5.80 R
2673 3771 0.620410 TGGACAGTTCCCCCGATGAT 60.620 55.0 0.00 0.00 42.01 2.45 R
3928 5037 0.394352 ATTTCCGGACCAGTGGATGC 60.394 55.0 18.40 4.64 33.42 3.91 R
4670 5829 0.661020 GGAACCACCTTGACGTTGTG 59.339 55.0 0.00 0.00 35.41 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.222227 AAGGGAGCCTCAAACCATTC 57.778 50.000 0.00 0.00 30.89 2.67
20 21 0.332972 AGGGAGCCTCAAACCATTCC 59.667 55.000 0.00 0.00 0.00 3.01
21 22 0.684479 GGGAGCCTCAAACCATTCCC 60.684 60.000 0.00 0.00 37.68 3.97
22 23 1.032114 GGAGCCTCAAACCATTCCCG 61.032 60.000 0.00 0.00 0.00 5.14
23 24 0.322546 GAGCCTCAAACCATTCCCGT 60.323 55.000 0.00 0.00 0.00 5.28
24 25 0.609131 AGCCTCAAACCATTCCCGTG 60.609 55.000 0.00 0.00 0.00 4.94
25 26 0.893727 GCCTCAAACCATTCCCGTGT 60.894 55.000 0.00 0.00 0.00 4.49
26 27 0.881118 CCTCAAACCATTCCCGTGTG 59.119 55.000 0.00 0.00 0.00 3.82
27 28 1.604604 CTCAAACCATTCCCGTGTGT 58.395 50.000 0.00 0.00 0.00 3.72
28 29 1.535462 CTCAAACCATTCCCGTGTGTC 59.465 52.381 0.00 0.00 0.00 3.67
29 30 1.134068 TCAAACCATTCCCGTGTGTCA 60.134 47.619 0.00 0.00 0.00 3.58
30 31 1.001815 CAAACCATTCCCGTGTGTCAC 60.002 52.381 0.00 0.00 0.00 3.67
40 41 3.588277 GTGTGTCACGACATGGTCT 57.412 52.632 2.72 0.00 43.97 3.85
41 42 1.139989 GTGTGTCACGACATGGTCTG 58.860 55.000 2.72 0.00 43.97 3.51
42 43 0.033366 TGTGTCACGACATGGTCTGG 59.967 55.000 2.72 0.00 43.97 3.86
43 44 0.317160 GTGTCACGACATGGTCTGGA 59.683 55.000 2.72 0.00 43.97 3.86
44 45 1.066858 GTGTCACGACATGGTCTGGAT 60.067 52.381 2.72 0.00 43.97 3.41
45 46 2.165641 GTGTCACGACATGGTCTGGATA 59.834 50.000 2.72 0.00 43.97 2.59
46 47 2.829120 TGTCACGACATGGTCTGGATAA 59.171 45.455 0.00 0.00 36.21 1.75
47 48 3.119137 TGTCACGACATGGTCTGGATAAG 60.119 47.826 0.00 0.00 36.21 1.73
48 49 3.130516 GTCACGACATGGTCTGGATAAGA 59.869 47.826 0.00 0.00 0.00 2.10
49 50 3.767131 TCACGACATGGTCTGGATAAGAA 59.233 43.478 0.00 0.00 36.40 2.52
50 51 4.221924 TCACGACATGGTCTGGATAAGAAA 59.778 41.667 0.00 0.00 36.40 2.52
51 52 4.330074 CACGACATGGTCTGGATAAGAAAC 59.670 45.833 0.00 0.00 36.40 2.78
52 53 4.020573 ACGACATGGTCTGGATAAGAAACA 60.021 41.667 0.00 0.00 36.40 2.83
53 54 5.118990 CGACATGGTCTGGATAAGAAACAT 58.881 41.667 0.00 0.00 36.40 2.71
54 55 5.235186 CGACATGGTCTGGATAAGAAACATC 59.765 44.000 0.00 0.00 36.40 3.06
55 56 5.118990 ACATGGTCTGGATAAGAAACATCG 58.881 41.667 0.00 0.00 36.40 3.84
56 57 3.531538 TGGTCTGGATAAGAAACATCGC 58.468 45.455 0.00 0.00 36.40 4.58
57 58 2.872858 GGTCTGGATAAGAAACATCGCC 59.127 50.000 0.00 0.00 36.40 5.54
58 59 2.872858 GTCTGGATAAGAAACATCGCCC 59.127 50.000 0.00 0.00 36.40 6.13
59 60 2.503765 TCTGGATAAGAAACATCGCCCA 59.496 45.455 0.00 0.00 29.54 5.36
60 61 2.874701 CTGGATAAGAAACATCGCCCAG 59.125 50.000 0.00 0.00 34.72 4.45
61 62 2.222027 GGATAAGAAACATCGCCCAGG 58.778 52.381 0.00 0.00 0.00 4.45
62 63 2.158813 GGATAAGAAACATCGCCCAGGA 60.159 50.000 0.00 0.00 0.00 3.86
63 64 2.691409 TAAGAAACATCGCCCAGGAG 57.309 50.000 0.00 0.00 0.00 3.69
64 65 0.035056 AAGAAACATCGCCCAGGAGG 60.035 55.000 0.00 0.00 39.47 4.30
77 78 4.097218 GGAGGCCTTCCAAACCAC 57.903 61.111 6.77 0.00 46.01 4.16
78 79 1.606601 GGAGGCCTTCCAAACCACC 60.607 63.158 6.77 0.00 46.01 4.61
79 80 1.460699 GAGGCCTTCCAAACCACCT 59.539 57.895 6.77 0.00 33.74 4.00
80 81 0.609406 GAGGCCTTCCAAACCACCTC 60.609 60.000 6.77 0.00 37.17 3.85
81 82 1.606601 GGCCTTCCAAACCACCTCC 60.607 63.158 0.00 0.00 0.00 4.30
82 83 1.152830 GCCTTCCAAACCACCTCCA 59.847 57.895 0.00 0.00 0.00 3.86
83 84 0.251787 GCCTTCCAAACCACCTCCAT 60.252 55.000 0.00 0.00 0.00 3.41
84 85 1.827245 GCCTTCCAAACCACCTCCATT 60.827 52.381 0.00 0.00 0.00 3.16
85 86 2.608623 CCTTCCAAACCACCTCCATTT 58.391 47.619 0.00 0.00 0.00 2.32
86 87 2.299867 CCTTCCAAACCACCTCCATTTG 59.700 50.000 0.00 0.00 33.90 2.32
87 88 1.337118 TCCAAACCACCTCCATTTGC 58.663 50.000 0.00 0.00 32.98 3.68
88 89 1.133199 TCCAAACCACCTCCATTTGCT 60.133 47.619 0.00 0.00 32.98 3.91
89 90 1.693606 CCAAACCACCTCCATTTGCTT 59.306 47.619 0.00 0.00 32.98 3.91
90 91 2.548493 CCAAACCACCTCCATTTGCTTG 60.548 50.000 0.00 0.00 32.98 4.01
91 92 1.341080 AACCACCTCCATTTGCTTGG 58.659 50.000 0.00 0.00 38.18 3.61
92 93 0.482446 ACCACCTCCATTTGCTTGGA 59.518 50.000 4.01 4.01 43.56 3.53
93 94 1.133199 ACCACCTCCATTTGCTTGGAA 60.133 47.619 5.35 0.00 45.03 3.53
94 95 1.547372 CCACCTCCATTTGCTTGGAAG 59.453 52.381 5.35 2.56 45.03 3.46
95 96 2.242043 CACCTCCATTTGCTTGGAAGT 58.758 47.619 5.35 3.09 45.03 3.01
96 97 2.029649 CACCTCCATTTGCTTGGAAGTG 60.030 50.000 14.21 14.21 46.40 3.16
97 98 1.547372 CCTCCATTTGCTTGGAAGTGG 59.453 52.381 9.47 9.47 45.03 4.00
98 99 2.242043 CTCCATTTGCTTGGAAGTGGT 58.758 47.619 13.95 0.00 45.03 4.16
99 100 2.629617 CTCCATTTGCTTGGAAGTGGTT 59.370 45.455 13.95 0.00 45.03 3.67
100 101 3.037549 TCCATTTGCTTGGAAGTGGTTT 58.962 40.909 13.95 0.00 42.82 3.27
101 102 3.132925 CCATTTGCTTGGAAGTGGTTTG 58.867 45.455 7.94 0.00 39.25 2.93
102 103 2.977772 TTTGCTTGGAAGTGGTTTGG 57.022 45.000 0.00 0.00 0.00 3.28
103 104 2.151502 TTGCTTGGAAGTGGTTTGGA 57.848 45.000 0.00 0.00 0.00 3.53
104 105 2.151502 TGCTTGGAAGTGGTTTGGAA 57.848 45.000 0.00 0.00 0.00 3.53
105 106 2.461695 TGCTTGGAAGTGGTTTGGAAA 58.538 42.857 0.00 0.00 0.00 3.13
106 107 3.037549 TGCTTGGAAGTGGTTTGGAAAT 58.962 40.909 0.00 0.00 0.00 2.17
107 108 3.181467 TGCTTGGAAGTGGTTTGGAAATG 60.181 43.478 0.00 0.00 0.00 2.32
108 109 3.069443 GCTTGGAAGTGGTTTGGAAATGA 59.931 43.478 0.00 0.00 0.00 2.57
109 110 4.797275 GCTTGGAAGTGGTTTGGAAATGAG 60.797 45.833 0.00 0.00 0.00 2.90
110 111 3.230134 TGGAAGTGGTTTGGAAATGAGG 58.770 45.455 0.00 0.00 0.00 3.86
111 112 3.230976 GGAAGTGGTTTGGAAATGAGGT 58.769 45.455 0.00 0.00 0.00 3.85
112 113 3.641436 GGAAGTGGTTTGGAAATGAGGTT 59.359 43.478 0.00 0.00 0.00 3.50
113 114 4.501400 GGAAGTGGTTTGGAAATGAGGTTG 60.501 45.833 0.00 0.00 0.00 3.77
114 115 3.642141 AGTGGTTTGGAAATGAGGTTGT 58.358 40.909 0.00 0.00 0.00 3.32
115 116 3.636764 AGTGGTTTGGAAATGAGGTTGTC 59.363 43.478 0.00 0.00 0.00 3.18
116 117 2.962421 TGGTTTGGAAATGAGGTTGTCC 59.038 45.455 0.00 0.00 0.00 4.02
117 118 2.299013 GGTTTGGAAATGAGGTTGTCCC 59.701 50.000 0.00 0.00 0.00 4.46
118 119 2.962421 GTTTGGAAATGAGGTTGTCCCA 59.038 45.455 0.00 0.00 34.66 4.37
119 120 3.320610 TTGGAAATGAGGTTGTCCCAA 57.679 42.857 0.00 0.00 34.66 4.12
120 121 3.320610 TGGAAATGAGGTTGTCCCAAA 57.679 42.857 0.00 0.00 34.66 3.28
121 122 2.962421 TGGAAATGAGGTTGTCCCAAAC 59.038 45.455 0.00 0.00 34.66 2.93
122 123 2.962421 GGAAATGAGGTTGTCCCAAACA 59.038 45.455 0.00 0.00 35.59 2.83
123 124 3.578282 GGAAATGAGGTTGTCCCAAACAT 59.422 43.478 0.00 0.00 37.82 2.71
124 125 4.559153 GAAATGAGGTTGTCCCAAACATG 58.441 43.478 0.00 0.00 37.82 3.21
125 126 2.746279 TGAGGTTGTCCCAAACATGT 57.254 45.000 0.00 0.00 37.82 3.21
126 127 2.582052 TGAGGTTGTCCCAAACATGTC 58.418 47.619 0.00 0.00 37.82 3.06
127 128 2.174639 TGAGGTTGTCCCAAACATGTCT 59.825 45.455 0.00 0.00 37.82 3.41
128 129 3.392947 TGAGGTTGTCCCAAACATGTCTA 59.607 43.478 0.00 0.00 37.82 2.59
129 130 4.042809 TGAGGTTGTCCCAAACATGTCTAT 59.957 41.667 0.00 0.00 37.82 1.98
130 131 4.589908 AGGTTGTCCCAAACATGTCTATC 58.410 43.478 0.00 0.00 37.82 2.08
131 132 4.042809 AGGTTGTCCCAAACATGTCTATCA 59.957 41.667 0.00 0.00 37.82 2.15
132 133 4.156008 GGTTGTCCCAAACATGTCTATCAC 59.844 45.833 0.00 0.00 37.82 3.06
133 134 3.595173 TGTCCCAAACATGTCTATCACG 58.405 45.455 0.00 0.00 31.20 4.35
134 135 3.007506 TGTCCCAAACATGTCTATCACGT 59.992 43.478 0.00 0.00 31.20 4.49
135 136 3.617263 GTCCCAAACATGTCTATCACGTC 59.383 47.826 0.00 0.00 0.00 4.34
136 137 2.603110 CCCAAACATGTCTATCACGTCG 59.397 50.000 0.00 0.00 0.00 5.12
137 138 2.603110 CCAAACATGTCTATCACGTCGG 59.397 50.000 0.00 0.00 0.00 4.79
138 139 3.507786 CAAACATGTCTATCACGTCGGA 58.492 45.455 0.00 0.00 0.00 4.55
139 140 2.846039 ACATGTCTATCACGTCGGAC 57.154 50.000 0.00 0.00 0.00 4.79
140 141 1.404391 ACATGTCTATCACGTCGGACC 59.596 52.381 1.91 0.00 0.00 4.46
141 142 1.030457 ATGTCTATCACGTCGGACCC 58.970 55.000 1.91 0.00 0.00 4.46
142 143 1.354506 GTCTATCACGTCGGACCCG 59.645 63.158 1.91 1.31 41.35 5.28
143 144 1.091771 GTCTATCACGTCGGACCCGA 61.092 60.000 7.11 7.11 46.87 5.14
153 154 4.196965 GGACCCGACAAATCCGAC 57.803 61.111 0.00 0.00 0.00 4.79
154 155 1.449070 GGACCCGACAAATCCGACC 60.449 63.158 0.00 0.00 0.00 4.79
158 159 1.223487 CCGACAAATCCGACCCCAT 59.777 57.895 0.00 0.00 0.00 4.00
161 162 0.546598 GACAAATCCGACCCCATCCT 59.453 55.000 0.00 0.00 0.00 3.24
175 176 3.299503 CCCATCCTAAACCATCCCAAAG 58.700 50.000 0.00 0.00 0.00 2.77
177 178 4.210331 CCATCCTAAACCATCCCAAAGAG 58.790 47.826 0.00 0.00 0.00 2.85
181 182 3.689649 CCTAAACCATCCCAAAGAGAACG 59.310 47.826 0.00 0.00 0.00 3.95
201 202 1.320344 TACCCTCTTCTGATGCGCGT 61.320 55.000 8.43 0.00 0.00 6.01
202 203 2.169789 CCCTCTTCTGATGCGCGTG 61.170 63.158 6.97 0.00 0.00 5.34
214 215 2.804167 CGCGTGCTCTCCTCTCAT 59.196 61.111 0.00 0.00 0.00 2.90
228 229 0.738975 TCTCATGTCTTAGCCGTCCG 59.261 55.000 0.00 0.00 0.00 4.79
230 231 1.153647 CATGTCTTAGCCGTCCGCA 60.154 57.895 0.00 0.00 41.38 5.69
305 307 2.544721 AGCATCAAGAGAGGGAAGACA 58.455 47.619 0.00 0.00 0.00 3.41
314 316 2.834549 GAGAGGGAAGACAAGGATCACA 59.165 50.000 0.00 0.00 0.00 3.58
322 324 1.747355 GACAAGGATCACATTGGCCAG 59.253 52.381 5.11 0.00 39.55 4.85
340 343 0.622136 AGCACAAGCCTCATGGATGA 59.378 50.000 0.00 0.00 43.56 2.92
405 414 4.682860 CGCTCAATTCATTCATTATTGGCC 59.317 41.667 0.00 0.00 31.74 5.36
539 789 4.343814 ACCTACATGGGTTTGAAAAAGGTG 59.656 41.667 0.00 0.00 41.11 4.00
549 799 3.874383 TGAAAAAGGTGAGATGGGTGA 57.126 42.857 0.00 0.00 0.00 4.02
555 805 1.609783 GTGAGATGGGTGAAGGGGG 59.390 63.158 0.00 0.00 0.00 5.40
786 1040 0.250467 TTGTCACTGCTCTCTTGGCC 60.250 55.000 0.00 0.00 0.00 5.36
788 1042 0.673022 GTCACTGCTCTCTTGGCCAG 60.673 60.000 5.11 0.00 0.00 4.85
790 1044 0.673022 CACTGCTCTCTTGGCCAGAC 60.673 60.000 5.11 0.00 0.00 3.51
794 1048 0.250467 GCTCTCTTGGCCAGACAACA 60.250 55.000 5.11 0.00 0.00 3.33
796 1050 1.345741 CTCTCTTGGCCAGACAACAGA 59.654 52.381 5.11 3.64 0.00 3.41
797 1051 1.768275 TCTCTTGGCCAGACAACAGAA 59.232 47.619 5.11 0.00 0.00 3.02
798 1052 2.172505 TCTCTTGGCCAGACAACAGAAA 59.827 45.455 5.11 0.00 0.00 2.52
799 1053 2.951642 CTCTTGGCCAGACAACAGAAAA 59.048 45.455 5.11 0.00 0.00 2.29
800 1054 3.360867 TCTTGGCCAGACAACAGAAAAA 58.639 40.909 5.11 0.00 0.00 1.94
868 1131 2.282180 TGCCACCCGCTTTCCTTC 60.282 61.111 0.00 0.00 38.78 3.46
957 1220 4.936802 TCTAGAGCTTCCAAGTTCCTACT 58.063 43.478 0.00 0.00 37.00 2.57
960 1223 4.417437 AGAGCTTCCAAGTTCCTACTGTA 58.583 43.478 0.00 0.00 37.00 2.74
963 1226 4.593634 AGCTTCCAAGTTCCTACTGTACTT 59.406 41.667 0.00 0.00 34.01 2.24
964 1227 4.930405 GCTTCCAAGTTCCTACTGTACTTC 59.070 45.833 0.00 0.00 34.01 3.01
965 1228 4.778534 TCCAAGTTCCTACTGTACTTCG 57.221 45.455 0.00 0.00 34.01 3.79
966 1229 4.147321 TCCAAGTTCCTACTGTACTTCGT 58.853 43.478 0.00 0.00 34.01 3.85
967 1230 5.316167 TCCAAGTTCCTACTGTACTTCGTA 58.684 41.667 0.00 0.00 34.01 3.43
968 1231 5.413833 TCCAAGTTCCTACTGTACTTCGTAG 59.586 44.000 0.00 2.88 34.01 3.51
981 2000 2.026262 ACTTCGTAGTTCCTACCCCGTA 60.026 50.000 0.00 0.00 33.79 4.02
1296 2340 5.733620 ACAGCTGAAATCAAATCACCAAT 57.266 34.783 23.35 0.00 0.00 3.16
1305 2349 1.205417 CAAATCACCAATCCCAGCACC 59.795 52.381 0.00 0.00 0.00 5.01
1335 2379 8.437575 TCTTAGTTTCAAAGTCTGGGAAATACT 58.562 33.333 3.35 0.00 33.58 2.12
1336 2380 8.617290 TTAGTTTCAAAGTCTGGGAAATACTC 57.383 34.615 3.35 0.00 33.58 2.59
1338 2382 5.843019 TTCAAAGTCTGGGAAATACTCCT 57.157 39.130 0.00 0.00 44.68 3.69
1339 2383 6.945636 TTCAAAGTCTGGGAAATACTCCTA 57.054 37.500 0.00 0.00 44.68 2.94
1340 2384 6.295719 TCAAAGTCTGGGAAATACTCCTAC 57.704 41.667 0.00 0.00 44.68 3.18
1341 2385 5.189145 TCAAAGTCTGGGAAATACTCCTACC 59.811 44.000 0.00 0.00 44.68 3.18
1342 2386 4.628661 AGTCTGGGAAATACTCCTACCT 57.371 45.455 0.00 0.00 44.68 3.08
1343 2387 4.548669 AGTCTGGGAAATACTCCTACCTC 58.451 47.826 0.00 0.00 44.68 3.85
1344 2388 4.016479 AGTCTGGGAAATACTCCTACCTCA 60.016 45.833 0.00 0.00 44.68 3.86
1365 2409 7.513190 CTCATTTAGGAGTCGTTCTTAGTTG 57.487 40.000 0.00 0.00 0.00 3.16
1372 2416 6.002704 AGGAGTCGTTCTTAGTTGTCTTCTA 58.997 40.000 0.00 0.00 0.00 2.10
1432 2476 3.002791 CTCGCAAAGGAAATAGCTGTGA 58.997 45.455 0.00 0.00 0.00 3.58
1439 2507 6.732154 CAAAGGAAATAGCTGTGATACCATG 58.268 40.000 0.00 0.00 0.00 3.66
1521 2592 1.210155 GCAGATGTCCGTTGGTTGC 59.790 57.895 0.00 0.00 0.00 4.17
1530 2602 0.251916 CCGTTGGTTGCCTGATCCTA 59.748 55.000 0.00 0.00 0.00 2.94
1531 2603 1.339631 CCGTTGGTTGCCTGATCCTAA 60.340 52.381 0.00 0.00 0.00 2.69
1559 2632 9.268268 TGTATATTAACCTGTTCCATCGATTTC 57.732 33.333 0.00 0.00 0.00 2.17
1627 2700 2.579410 TCCTTTAAGAACCCACAGCC 57.421 50.000 0.00 0.00 0.00 4.85
1745 2818 3.744426 CAGGTACAAAGGTTAGTTCACCG 59.256 47.826 0.00 0.00 42.33 4.94
1819 2892 6.823689 ACTGTTTTATACTACCAGAGGCAATG 59.176 38.462 0.00 0.00 0.00 2.82
1858 2934 9.399403 GTACCCTAGTTTAATAAGCGTGTATAC 57.601 37.037 0.00 0.00 0.00 1.47
1868 2944 2.953669 CGTGTATACGTGCTGTCCC 58.046 57.895 3.56 0.00 44.99 4.46
1870 2946 1.202371 CGTGTATACGTGCTGTCCCAT 60.202 52.381 3.56 0.00 44.99 4.00
2185 3274 9.962783 ATTAGCATTTTTAGTAGTACTACCTCG 57.037 33.333 25.97 11.24 36.75 4.63
2186 3275 6.803642 AGCATTTTTAGTAGTACTACCTCGG 58.196 40.000 25.97 12.49 36.75 4.63
2187 3276 6.379417 AGCATTTTTAGTAGTACTACCTCGGT 59.621 38.462 25.97 12.20 36.75 4.69
2188 3277 6.694844 GCATTTTTAGTAGTACTACCTCGGTC 59.305 42.308 25.97 8.27 36.75 4.79
2189 3278 6.759497 TTTTTAGTAGTACTACCTCGGTCC 57.241 41.667 25.97 2.42 36.75 4.46
2190 3279 5.700402 TTTAGTAGTACTACCTCGGTCCT 57.300 43.478 25.97 10.23 36.75 3.85
2191 3280 3.557228 AGTAGTACTACCTCGGTCCTG 57.443 52.381 25.97 0.00 36.75 3.86
2192 3281 2.172293 AGTAGTACTACCTCGGTCCTGG 59.828 54.545 25.97 0.00 36.75 4.45
2193 3282 0.998145 AGTACTACCTCGGTCCTGGT 59.002 55.000 0.00 8.26 40.12 4.00
2194 3283 1.357079 AGTACTACCTCGGTCCTGGTT 59.643 52.381 8.46 0.00 37.74 3.67
2195 3284 2.174360 GTACTACCTCGGTCCTGGTTT 58.826 52.381 8.46 0.99 37.74 3.27
2196 3285 2.610438 ACTACCTCGGTCCTGGTTTA 57.390 50.000 8.46 0.00 37.74 2.01
2197 3286 2.174360 ACTACCTCGGTCCTGGTTTAC 58.826 52.381 8.46 0.00 37.74 2.01
2198 3287 1.479730 CTACCTCGGTCCTGGTTTACC 59.520 57.143 8.46 0.00 37.74 2.85
2199 3288 1.196766 ACCTCGGTCCTGGTTTACCC 61.197 60.000 0.00 0.00 31.62 3.69
2200 3289 1.600638 CTCGGTCCTGGTTTACCCC 59.399 63.158 0.00 0.00 34.29 4.95
2201 3290 1.907222 CTCGGTCCTGGTTTACCCCC 61.907 65.000 0.00 0.00 34.29 5.40
2216 3305 3.816054 CCCCCTCGTAGTTTGGGT 58.184 61.111 0.00 0.00 39.31 4.51
2217 3306 1.600638 CCCCCTCGTAGTTTGGGTC 59.399 63.158 0.00 0.00 39.31 4.46
2218 3307 1.196104 CCCCCTCGTAGTTTGGGTCA 61.196 60.000 0.00 0.00 39.31 4.02
2219 3308 0.688487 CCCCTCGTAGTTTGGGTCAA 59.312 55.000 0.00 0.00 39.31 3.18
2220 3309 1.072648 CCCCTCGTAGTTTGGGTCAAA 59.927 52.381 0.00 0.00 39.31 2.69
2221 3310 2.423577 CCCTCGTAGTTTGGGTCAAAG 58.576 52.381 0.00 0.00 33.82 2.77
2222 3311 2.224450 CCCTCGTAGTTTGGGTCAAAGT 60.224 50.000 6.08 6.08 39.80 2.66
2223 3312 3.473625 CCTCGTAGTTTGGGTCAAAGTT 58.526 45.455 6.11 0.00 37.96 2.66
2224 3313 3.881089 CCTCGTAGTTTGGGTCAAAGTTT 59.119 43.478 6.11 0.00 37.96 2.66
2225 3314 4.261031 CCTCGTAGTTTGGGTCAAAGTTTG 60.261 45.833 9.44 9.44 37.96 2.93
2226 3315 4.515361 TCGTAGTTTGGGTCAAAGTTTGA 58.485 39.130 14.35 14.35 37.96 2.69
2240 3329 7.581213 TCAAAGTTTGACCACATATTTGACT 57.419 32.000 14.35 0.00 34.08 3.41
2241 3330 8.684386 TCAAAGTTTGACCACATATTTGACTA 57.316 30.769 14.35 0.00 34.08 2.59
2242 3331 8.783093 TCAAAGTTTGACCACATATTTGACTAG 58.217 33.333 14.35 0.00 34.08 2.57
2243 3332 6.743575 AGTTTGACCACATATTTGACTAGC 57.256 37.500 0.00 0.00 0.00 3.42
2244 3333 6.237901 AGTTTGACCACATATTTGACTAGCA 58.762 36.000 0.00 0.00 0.00 3.49
2245 3334 6.714810 AGTTTGACCACATATTTGACTAGCAA 59.285 34.615 0.00 0.00 33.88 3.91
2259 3348 7.815398 TTGACTAGCAAAATGTTAATGCATG 57.185 32.000 0.00 0.00 42.45 4.06
2260 3349 6.923012 TGACTAGCAAAATGTTAATGCATGT 58.077 32.000 0.00 0.00 42.45 3.21
2261 3350 7.028962 TGACTAGCAAAATGTTAATGCATGTC 58.971 34.615 0.00 12.40 42.45 3.06
2262 3351 6.923012 ACTAGCAAAATGTTAATGCATGTCA 58.077 32.000 0.00 0.14 42.45 3.58
2263 3352 7.031372 ACTAGCAAAATGTTAATGCATGTCAG 58.969 34.615 0.00 0.00 42.45 3.51
2264 3353 4.628333 AGCAAAATGTTAATGCATGTCAGC 59.372 37.500 0.00 0.50 42.45 4.26
2279 3368 8.774890 TGCATGTCAGCAAAAATTATATTGTT 57.225 26.923 0.00 0.00 42.46 2.83
2280 3369 8.657729 TGCATGTCAGCAAAAATTATATTGTTG 58.342 29.630 0.00 8.25 42.46 3.33
2281 3370 8.117988 GCATGTCAGCAAAAATTATATTGTTGG 58.882 33.333 12.27 2.63 38.03 3.77
2282 3371 9.368674 CATGTCAGCAAAAATTATATTGTTGGA 57.631 29.630 12.27 4.39 38.03 3.53
2284 3373 9.941325 TGTCAGCAAAAATTATATTGTTGGATT 57.059 25.926 12.27 0.00 38.03 3.01
2286 3375 9.299963 TCAGCAAAAATTATATTGTTGGATTCG 57.700 29.630 12.27 0.00 38.03 3.34
2287 3376 9.086336 CAGCAAAAATTATATTGTTGGATTCGT 57.914 29.630 4.89 0.00 35.09 3.85
2300 3389 7.915293 TGTTGGATTCGTATTTGAATGTAGT 57.085 32.000 0.00 0.00 38.65 2.73
2301 3390 8.330466 TGTTGGATTCGTATTTGAATGTAGTT 57.670 30.769 0.00 0.00 38.65 2.24
2302 3391 8.788806 TGTTGGATTCGTATTTGAATGTAGTTT 58.211 29.630 0.00 0.00 38.65 2.66
2303 3392 9.274065 GTTGGATTCGTATTTGAATGTAGTTTC 57.726 33.333 0.00 0.00 38.65 2.78
2304 3393 7.981142 TGGATTCGTATTTGAATGTAGTTTCC 58.019 34.615 0.00 0.00 38.65 3.13
2305 3394 7.608376 TGGATTCGTATTTGAATGTAGTTTCCA 59.392 33.333 0.00 0.00 38.65 3.53
2306 3395 8.455682 GGATTCGTATTTGAATGTAGTTTCCAA 58.544 33.333 0.00 0.00 38.65 3.53
2383 3472 8.671384 TCAAAATATGACCTAAAATACGAGGG 57.329 34.615 0.00 0.00 37.14 4.30
2384 3473 7.717875 TCAAAATATGACCTAAAATACGAGGGG 59.282 37.037 0.00 0.00 37.14 4.79
2385 3474 5.757099 ATATGACCTAAAATACGAGGGGG 57.243 43.478 0.00 0.00 37.14 5.40
2400 3489 3.016745 GGGGGCTAGTAAACCAGGA 57.983 57.895 0.00 0.00 0.00 3.86
2401 3490 0.545171 GGGGGCTAGTAAACCAGGAC 59.455 60.000 0.00 0.00 0.00 3.85
2402 3491 0.177373 GGGGCTAGTAAACCAGGACG 59.823 60.000 0.00 0.00 0.00 4.79
2403 3492 0.177373 GGGCTAGTAAACCAGGACGG 59.823 60.000 0.00 0.00 42.50 4.79
2404 3493 1.188863 GGCTAGTAAACCAGGACGGA 58.811 55.000 0.00 0.00 38.63 4.69
2405 3494 1.136500 GGCTAGTAAACCAGGACGGAG 59.864 57.143 0.00 0.00 38.63 4.63
2406 3495 1.136500 GCTAGTAAACCAGGACGGAGG 59.864 57.143 0.00 0.00 38.63 4.30
2407 3496 2.454538 CTAGTAAACCAGGACGGAGGT 58.545 52.381 0.00 0.00 40.61 3.85
2408 3497 2.610438 AGTAAACCAGGACGGAGGTA 57.390 50.000 0.00 0.00 37.07 3.08
2409 3498 2.454538 AGTAAACCAGGACGGAGGTAG 58.545 52.381 0.00 0.00 37.07 3.18
2410 3499 2.174360 GTAAACCAGGACGGAGGTAGT 58.826 52.381 0.00 0.00 37.07 2.73
2411 3500 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
2412 3501 1.844687 AACCAGGACGGAGGTAGTAC 58.155 55.000 0.00 0.00 37.07 2.73
2427 3516 7.980099 CGGAGGTAGTACATCTTAAGTTTTGAT 59.020 37.037 14.16 0.00 0.00 2.57
2496 3590 3.960002 CGTGCCGCTAATTTATTTTCTCG 59.040 43.478 0.00 0.00 0.00 4.04
2501 3595 5.851703 GCCGCTAATTTATTTTCTCGAATCC 59.148 40.000 0.00 0.00 0.00 3.01
2597 3691 5.115480 TGCATTTTCTGTTTTTCTTCCCAC 58.885 37.500 0.00 0.00 0.00 4.61
2598 3692 5.104982 TGCATTTTCTGTTTTTCTTCCCACT 60.105 36.000 0.00 0.00 0.00 4.00
3039 4142 9.865321 TGTTTCTATACCTGTATGTTCACTAAC 57.135 33.333 0.05 0.00 36.07 2.34
3065 4168 9.893305 CAATCTATCATTATGTGTAGACGTGTA 57.107 33.333 0.00 0.00 0.00 2.90
3084 4187 5.539048 GTGTAGCTGTCTACTTTCAGGAAA 58.461 41.667 0.00 0.00 44.26 3.13
3112 4215 5.353938 AGCATCTTAAGTAAATCGGCGTAA 58.646 37.500 6.85 0.00 0.00 3.18
3113 4216 5.813672 AGCATCTTAAGTAAATCGGCGTAAA 59.186 36.000 6.85 0.00 0.00 2.01
3123 4226 8.609478 AGTAAATCGGCGTAAAATTTTGTATG 57.391 30.769 13.76 1.37 0.00 2.39
3129 4232 5.620429 CGGCGTAAAATTTTGTATGGGACTT 60.620 40.000 13.76 0.00 0.00 3.01
3130 4233 5.575218 GGCGTAAAATTTTGTATGGGACTTG 59.425 40.000 13.76 0.00 0.00 3.16
3132 4235 6.307077 GCGTAAAATTTTGTATGGGACTTGAC 59.693 38.462 13.76 0.00 0.00 3.18
3134 4237 8.723311 CGTAAAATTTTGTATGGGACTTGACTA 58.277 33.333 13.76 0.00 0.00 2.59
3157 4260 2.827322 TGAAATCCACATTCTTGGCAGG 59.173 45.455 0.00 0.00 36.48 4.85
3158 4261 1.856629 AATCCACATTCTTGGCAGGG 58.143 50.000 0.00 0.00 36.48 4.45
3160 4263 0.038166 TCCACATTCTTGGCAGGGTC 59.962 55.000 0.00 0.00 36.48 4.46
3174 4278 3.609853 GCAGGGTCATGATGTTCTAACA 58.390 45.455 0.00 0.00 44.06 2.41
3185 4289 7.669304 TCATGATGTTCTAACAATTTCCTCCAA 59.331 33.333 0.00 0.00 43.03 3.53
3239 4343 4.450976 TCTTTGCACATCTACACAGTTGT 58.549 39.130 0.00 0.00 40.02 3.32
3246 4350 6.183360 TGCACATCTACACAGTTGTCATTTTT 60.183 34.615 0.00 0.00 37.15 1.94
3247 4351 6.360681 GCACATCTACACAGTTGTCATTTTTC 59.639 38.462 0.00 0.00 37.15 2.29
3248 4352 7.642669 CACATCTACACAGTTGTCATTTTTCT 58.357 34.615 0.00 0.00 37.15 2.52
3249 4353 8.773645 CACATCTACACAGTTGTCATTTTTCTA 58.226 33.333 0.00 0.00 37.15 2.10
3261 4365 7.945033 TGTCATTTTTCTAAATTTGCTGGTC 57.055 32.000 0.00 0.00 31.63 4.02
3277 4381 5.387788 TGCTGGTCCTGCATATAAAATGAT 58.612 37.500 18.72 0.00 33.63 2.45
3294 4398 1.447317 GATCCGGGCGACAATTGCAT 61.447 55.000 5.05 0.00 0.00 3.96
3334 4438 4.994852 GGTGATGTAGCTGTAACTTGTGAA 59.005 41.667 0.00 0.00 0.00 3.18
3379 4485 1.115467 TAGCAGACCAGAAGGCTAGC 58.885 55.000 6.04 6.04 39.06 3.42
3385 4491 2.373502 AGACCAGAAGGCTAGCAACTTT 59.626 45.455 18.24 4.89 39.06 2.66
3400 4506 2.376808 ACTTTGGAGTCGCTCATGAG 57.623 50.000 18.84 18.84 31.08 2.90
3410 4516 4.868195 CTCATGAGCACGTGTCGA 57.132 55.556 18.38 5.94 34.90 4.20
3420 4526 3.331150 AGCACGTGTCGATTAATTCCAA 58.669 40.909 18.38 0.00 0.00 3.53
3451 4557 5.189145 ACCTACGAATGAGGGTTCAAGTAAT 59.811 40.000 0.00 0.00 38.52 1.89
3545 4651 0.178915 GCCCCCAAACCCCTAGTTTT 60.179 55.000 0.00 0.00 46.79 2.43
3550 4656 4.468510 CCCCCAAACCCCTAGTTTTATTTC 59.531 45.833 0.00 0.00 46.79 2.17
3572 4678 4.051922 CGTCTAAATCTACTGGGCATGAC 58.948 47.826 0.00 0.00 0.00 3.06
3576 4682 6.017605 GTCTAAATCTACTGGGCATGACATTG 60.018 42.308 0.00 0.00 0.00 2.82
3612 4721 9.899226 AGAACTTAAAACTTACTCATTTGCATC 57.101 29.630 0.00 0.00 0.00 3.91
3613 4722 9.899226 GAACTTAAAACTTACTCATTTGCATCT 57.101 29.630 0.00 0.00 0.00 2.90
3783 4892 0.326264 GGAGAGGAGAAAAGCAGGCA 59.674 55.000 0.00 0.00 0.00 4.75
3881 4990 8.560124 AACAACTAGATCTAGAAGATTCCCAT 57.440 34.615 31.91 6.57 34.53 4.00
3901 5010 3.604875 TGTTAGTTTCGACTCCCATCC 57.395 47.619 0.00 0.00 0.00 3.51
3902 5011 3.170717 TGTTAGTTTCGACTCCCATCCT 58.829 45.455 0.00 0.00 0.00 3.24
3913 5022 4.322049 CGACTCCCATCCTATATCGCTTTT 60.322 45.833 0.00 0.00 0.00 2.27
3915 5024 4.020128 ACTCCCATCCTATATCGCTTTTCC 60.020 45.833 0.00 0.00 0.00 3.13
3916 5025 4.168101 TCCCATCCTATATCGCTTTTCCT 58.832 43.478 0.00 0.00 0.00 3.36
3917 5026 4.020218 TCCCATCCTATATCGCTTTTCCTG 60.020 45.833 0.00 0.00 0.00 3.86
3919 5028 5.308825 CCATCCTATATCGCTTTTCCTGTT 58.691 41.667 0.00 0.00 0.00 3.16
3920 5029 6.464222 CCATCCTATATCGCTTTTCCTGTTA 58.536 40.000 0.00 0.00 0.00 2.41
3959 5073 7.487829 CACTGGTCCGGAAATATTGTTTTATTG 59.512 37.037 5.23 0.00 0.00 1.90
3962 5076 8.030106 TGGTCCGGAAATATTGTTTTATTGAAC 58.970 33.333 5.23 0.00 0.00 3.18
3976 5090 1.732941 TTGAACGGCTATGCGATGTT 58.267 45.000 0.00 0.00 0.00 2.71
4011 5125 1.533033 TGACCTCAGAGGCCGAACA 60.533 57.895 17.31 6.59 39.63 3.18
4060 5174 0.251787 GCCCTGAAGAAATGGGTGGT 60.252 55.000 0.00 0.00 42.77 4.16
4075 5189 2.041755 GGGTGGTGGGAGAAGAGATTTT 59.958 50.000 0.00 0.00 0.00 1.82
4134 5248 3.625853 GAAGCAGGGGAAGATTTTAGCT 58.374 45.455 0.00 0.00 0.00 3.32
4169 5283 7.885009 ACTGTATTTTCTCTAGGGTACTCTC 57.115 40.000 0.00 0.00 0.00 3.20
4231 5348 6.479006 TGATGATCATCACCTTTTGAAGAGT 58.521 36.000 30.27 0.00 42.42 3.24
4273 5390 6.773638 TGGTCATCTTAAAAGCTTCTCTCTT 58.226 36.000 0.00 0.00 0.00 2.85
4285 5402 9.598517 AAAAGCTTCTCTCTTTAGTATCTGATG 57.401 33.333 0.00 0.00 33.77 3.07
4286 5403 8.532186 AAGCTTCTCTCTTTAGTATCTGATGA 57.468 34.615 0.00 0.00 0.00 2.92
4287 5404 8.710749 AGCTTCTCTCTTTAGTATCTGATGAT 57.289 34.615 0.00 0.00 36.74 2.45
4288 5405 8.579006 AGCTTCTCTCTTTAGTATCTGATGATG 58.421 37.037 0.00 0.00 34.32 3.07
4289 5406 8.575589 GCTTCTCTCTTTAGTATCTGATGATGA 58.424 37.037 0.00 0.00 34.32 2.92
4292 5409 9.804977 TCTCTCTTTAGTATCTGATGATGATGA 57.195 33.333 0.00 0.00 34.32 2.92
4294 5411 9.022884 TCTCTTTAGTATCTGATGATGATGAGG 57.977 37.037 0.00 0.00 34.32 3.86
4295 5412 8.946797 TCTTTAGTATCTGATGATGATGAGGA 57.053 34.615 0.00 0.00 34.32 3.71
4296 5413 9.544579 TCTTTAGTATCTGATGATGATGAGGAT 57.455 33.333 0.00 0.00 34.32 3.24
4297 5414 9.589111 CTTTAGTATCTGATGATGATGAGGATG 57.411 37.037 0.00 0.00 34.32 3.51
4302 5419 6.875972 TCTGATGATGATGAGGATGATGAT 57.124 37.500 0.00 0.00 0.00 2.45
4304 5421 5.186198 TGATGATGATGAGGATGATGATGC 58.814 41.667 0.00 0.00 0.00 3.91
4312 5429 6.156256 TGATGAGGATGATGATGCTGATGATA 59.844 38.462 0.00 0.00 28.67 2.15
4438 5559 7.060383 ACAACATGTGTATTTTCCATGGAAA 57.940 32.000 31.75 31.75 39.29 3.13
4542 5663 8.612619 TGATGACTTGTTACTTCTTCTGTTTTC 58.387 33.333 0.00 0.00 0.00 2.29
4578 5719 8.994429 AAACTTGTTTTGTATTTCATGTGACA 57.006 26.923 0.00 0.00 0.00 3.58
4637 5795 1.215423 ACAATATCAAGGTGGGCCCTC 59.785 52.381 25.70 20.64 45.47 4.30
4639 5797 0.399949 ATATCAAGGTGGGCCCTCGA 60.400 55.000 25.70 12.83 45.47 4.04
4649 5807 2.618709 GTGGGCCCTCGATGAAAAATAG 59.381 50.000 25.70 0.00 0.00 1.73
4653 5811 2.230660 CCCTCGATGAAAAATAGGGGC 58.769 52.381 0.00 0.00 42.79 5.80
4655 5814 2.618709 CCTCGATGAAAAATAGGGGCAC 59.381 50.000 0.00 0.00 0.00 5.01
4658 5817 2.650322 GATGAAAAATAGGGGCACGGA 58.350 47.619 0.00 0.00 0.00 4.69
4660 5819 3.935818 TGAAAAATAGGGGCACGGATA 57.064 42.857 0.00 0.00 0.00 2.59
4670 5829 1.702491 GGCACGGATAACAACTCGGC 61.702 60.000 0.00 0.00 0.00 5.54
4724 5883 5.440685 CAAAACATAACGATATTCTCCGGC 58.559 41.667 0.00 0.00 0.00 6.13
4756 5915 5.805728 TCTTAAACCTGAAGGAATCTCACC 58.194 41.667 2.62 0.00 38.94 4.02
4760 5931 1.649664 CTGAAGGAATCTCACCAGCG 58.350 55.000 0.00 0.00 0.00 5.18
4884 6062 3.083600 GAATCGGCGGCGAGTTGTG 62.084 63.158 36.74 5.78 0.00 3.33
5128 6310 0.601558 TTCCTTCTCCGTTGGACTCG 59.398 55.000 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.332972 GGAATGGTTTGAGGCTCCCT 59.667 55.000 12.86 0.00 36.03 4.20
2 3 0.684479 GGGAATGGTTTGAGGCTCCC 60.684 60.000 12.86 6.70 36.01 4.30
3 4 1.032114 CGGGAATGGTTTGAGGCTCC 61.032 60.000 12.86 0.00 0.00 4.70
4 5 0.322546 ACGGGAATGGTTTGAGGCTC 60.323 55.000 7.79 7.79 0.00 4.70
5 6 0.609131 CACGGGAATGGTTTGAGGCT 60.609 55.000 0.00 0.00 0.00 4.58
6 7 0.893727 ACACGGGAATGGTTTGAGGC 60.894 55.000 0.00 0.00 0.00 4.70
7 8 0.881118 CACACGGGAATGGTTTGAGG 59.119 55.000 0.00 0.00 0.00 3.86
8 9 1.535462 GACACACGGGAATGGTTTGAG 59.465 52.381 0.00 0.00 0.00 3.02
9 10 1.134068 TGACACACGGGAATGGTTTGA 60.134 47.619 0.00 0.00 0.00 2.69
10 11 1.001815 GTGACACACGGGAATGGTTTG 60.002 52.381 0.00 0.00 0.00 2.93
11 12 1.314730 GTGACACACGGGAATGGTTT 58.685 50.000 0.00 0.00 0.00 3.27
12 13 3.015516 GTGACACACGGGAATGGTT 57.984 52.632 0.00 0.00 0.00 3.67
13 14 4.792087 GTGACACACGGGAATGGT 57.208 55.556 0.00 0.00 0.00 3.55
22 23 1.139989 CAGACCATGTCGTGACACAC 58.860 55.000 4.57 4.03 45.05 3.82
23 24 0.033366 CCAGACCATGTCGTGACACA 59.967 55.000 4.57 0.00 45.05 3.72
24 25 0.317160 TCCAGACCATGTCGTGACAC 59.683 55.000 4.57 0.00 45.05 3.67
25 26 1.266178 ATCCAGACCATGTCGTGACA 58.734 50.000 4.99 4.99 46.44 3.58
26 27 3.130516 TCTTATCCAGACCATGTCGTGAC 59.869 47.826 0.00 0.00 37.67 3.67
27 28 3.361786 TCTTATCCAGACCATGTCGTGA 58.638 45.455 0.00 0.00 37.67 4.35
28 29 3.801114 TCTTATCCAGACCATGTCGTG 57.199 47.619 0.00 0.00 37.67 4.35
29 30 4.020573 TGTTTCTTATCCAGACCATGTCGT 60.021 41.667 0.00 0.00 37.67 4.34
30 31 4.503910 TGTTTCTTATCCAGACCATGTCG 58.496 43.478 0.00 0.00 37.67 4.35
31 32 5.235186 CGATGTTTCTTATCCAGACCATGTC 59.765 44.000 0.00 0.00 0.00 3.06
32 33 5.118990 CGATGTTTCTTATCCAGACCATGT 58.881 41.667 0.00 0.00 0.00 3.21
33 34 4.024556 GCGATGTTTCTTATCCAGACCATG 60.025 45.833 0.00 0.00 0.00 3.66
34 35 4.130118 GCGATGTTTCTTATCCAGACCAT 58.870 43.478 0.00 0.00 0.00 3.55
35 36 3.531538 GCGATGTTTCTTATCCAGACCA 58.468 45.455 0.00 0.00 0.00 4.02
36 37 2.872858 GGCGATGTTTCTTATCCAGACC 59.127 50.000 0.00 0.00 0.00 3.85
37 38 2.872858 GGGCGATGTTTCTTATCCAGAC 59.127 50.000 0.00 0.00 0.00 3.51
38 39 2.503765 TGGGCGATGTTTCTTATCCAGA 59.496 45.455 0.00 0.00 0.00 3.86
39 40 2.874701 CTGGGCGATGTTTCTTATCCAG 59.125 50.000 0.00 0.00 35.27 3.86
40 41 2.421388 CCTGGGCGATGTTTCTTATCCA 60.421 50.000 0.00 0.00 0.00 3.41
41 42 2.158813 TCCTGGGCGATGTTTCTTATCC 60.159 50.000 0.00 0.00 0.00 2.59
42 43 3.134458 CTCCTGGGCGATGTTTCTTATC 58.866 50.000 0.00 0.00 0.00 1.75
43 44 2.158755 CCTCCTGGGCGATGTTTCTTAT 60.159 50.000 0.00 0.00 0.00 1.73
44 45 1.209504 CCTCCTGGGCGATGTTTCTTA 59.790 52.381 0.00 0.00 0.00 2.10
45 46 0.035056 CCTCCTGGGCGATGTTTCTT 60.035 55.000 0.00 0.00 0.00 2.52
46 47 1.604378 CCTCCTGGGCGATGTTTCT 59.396 57.895 0.00 0.00 0.00 2.52
47 48 4.225497 CCTCCTGGGCGATGTTTC 57.775 61.111 0.00 0.00 0.00 2.78
56 57 1.304464 GTTTGGAAGGCCTCCTGGG 60.304 63.158 5.23 0.00 45.64 4.45
57 58 1.304464 GGTTTGGAAGGCCTCCTGG 60.304 63.158 5.23 0.00 45.64 4.45
58 59 0.895559 GTGGTTTGGAAGGCCTCCTG 60.896 60.000 5.23 0.00 45.64 3.86
59 60 1.460699 GTGGTTTGGAAGGCCTCCT 59.539 57.895 5.23 0.00 45.64 3.69
60 61 1.606601 GGTGGTTTGGAAGGCCTCC 60.607 63.158 5.23 10.23 45.64 4.30
61 62 0.609406 GAGGTGGTTTGGAAGGCCTC 60.609 60.000 5.23 0.00 36.21 4.70
62 63 1.460699 GAGGTGGTTTGGAAGGCCT 59.539 57.895 0.00 0.00 34.31 5.19
63 64 1.606601 GGAGGTGGTTTGGAAGGCC 60.607 63.158 0.00 0.00 0.00 5.19
64 65 0.251787 ATGGAGGTGGTTTGGAAGGC 60.252 55.000 0.00 0.00 0.00 4.35
65 66 2.299867 CAAATGGAGGTGGTTTGGAAGG 59.700 50.000 0.00 0.00 31.08 3.46
66 67 2.289010 GCAAATGGAGGTGGTTTGGAAG 60.289 50.000 0.00 0.00 34.34 3.46
67 68 1.691434 GCAAATGGAGGTGGTTTGGAA 59.309 47.619 0.00 0.00 34.34 3.53
68 69 1.133199 AGCAAATGGAGGTGGTTTGGA 60.133 47.619 0.00 0.00 34.34 3.53
69 70 1.341080 AGCAAATGGAGGTGGTTTGG 58.659 50.000 0.00 0.00 34.34 3.28
70 71 2.548493 CCAAGCAAATGGAGGTGGTTTG 60.548 50.000 0.00 0.00 43.54 2.93
71 72 1.693606 CCAAGCAAATGGAGGTGGTTT 59.306 47.619 0.00 0.00 43.54 3.27
72 73 1.133199 TCCAAGCAAATGGAGGTGGTT 60.133 47.619 2.11 0.00 44.52 3.67
73 74 0.482446 TCCAAGCAAATGGAGGTGGT 59.518 50.000 2.11 0.00 44.52 4.16
74 75 3.362040 TCCAAGCAAATGGAGGTGG 57.638 52.632 2.11 0.00 44.52 4.61
80 81 3.132925 CAAACCACTTCCAAGCAAATGG 58.867 45.455 0.00 0.00 42.12 3.16
81 82 3.132925 CCAAACCACTTCCAAGCAAATG 58.867 45.455 0.00 0.00 0.00 2.32
82 83 3.037549 TCCAAACCACTTCCAAGCAAAT 58.962 40.909 0.00 0.00 0.00 2.32
83 84 2.461695 TCCAAACCACTTCCAAGCAAA 58.538 42.857 0.00 0.00 0.00 3.68
84 85 2.151502 TCCAAACCACTTCCAAGCAA 57.848 45.000 0.00 0.00 0.00 3.91
85 86 2.151502 TTCCAAACCACTTCCAAGCA 57.848 45.000 0.00 0.00 0.00 3.91
86 87 3.069443 TCATTTCCAAACCACTTCCAAGC 59.931 43.478 0.00 0.00 0.00 4.01
87 88 4.262164 CCTCATTTCCAAACCACTTCCAAG 60.262 45.833 0.00 0.00 0.00 3.61
88 89 3.640967 CCTCATTTCCAAACCACTTCCAA 59.359 43.478 0.00 0.00 0.00 3.53
89 90 3.230134 CCTCATTTCCAAACCACTTCCA 58.770 45.455 0.00 0.00 0.00 3.53
90 91 3.230976 ACCTCATTTCCAAACCACTTCC 58.769 45.455 0.00 0.00 0.00 3.46
91 92 4.099419 ACAACCTCATTTCCAAACCACTTC 59.901 41.667 0.00 0.00 0.00 3.01
92 93 4.030216 ACAACCTCATTTCCAAACCACTT 58.970 39.130 0.00 0.00 0.00 3.16
93 94 3.636764 GACAACCTCATTTCCAAACCACT 59.363 43.478 0.00 0.00 0.00 4.00
94 95 3.243737 GGACAACCTCATTTCCAAACCAC 60.244 47.826 0.00 0.00 0.00 4.16
95 96 2.962421 GGACAACCTCATTTCCAAACCA 59.038 45.455 0.00 0.00 0.00 3.67
96 97 2.299013 GGGACAACCTCATTTCCAAACC 59.701 50.000 0.00 0.00 35.85 3.27
97 98 2.962421 TGGGACAACCTCATTTCCAAAC 59.038 45.455 0.00 0.00 41.11 2.93
98 99 3.320610 TGGGACAACCTCATTTCCAAA 57.679 42.857 0.00 0.00 41.11 3.28
110 111 6.538183 ACGTGATAGACATGTTTGGGACAAC 61.538 44.000 0.00 0.00 45.16 3.32
111 112 4.504165 ACGTGATAGACATGTTTGGGACAA 60.504 41.667 0.00 0.00 45.16 3.18
112 113 3.007506 ACGTGATAGACATGTTTGGGACA 59.992 43.478 0.00 0.00 45.16 4.02
113 114 3.596214 ACGTGATAGACATGTTTGGGAC 58.404 45.455 0.00 0.00 45.16 4.46
114 115 3.973206 ACGTGATAGACATGTTTGGGA 57.027 42.857 0.00 0.00 45.16 4.37
121 122 1.269102 GGGTCCGACGTGATAGACATG 60.269 57.143 0.00 0.00 40.93 3.21
122 123 1.030457 GGGTCCGACGTGATAGACAT 58.970 55.000 0.00 0.00 0.00 3.06
123 124 1.371337 CGGGTCCGACGTGATAGACA 61.371 60.000 2.83 0.00 42.83 3.41
124 125 1.091771 TCGGGTCCGACGTGATAGAC 61.092 60.000 8.14 0.00 44.01 2.59
125 126 1.221566 TCGGGTCCGACGTGATAGA 59.778 57.895 8.14 0.00 44.01 1.98
126 127 3.817787 TCGGGTCCGACGTGATAG 58.182 61.111 8.14 0.00 44.01 2.08
136 137 1.449070 GGTCGGATTTGTCGGGTCC 60.449 63.158 0.00 0.00 0.00 4.46
137 138 1.449070 GGGTCGGATTTGTCGGGTC 60.449 63.158 0.00 0.00 0.00 4.46
138 139 2.666812 GGGTCGGATTTGTCGGGT 59.333 61.111 0.00 0.00 0.00 5.28
139 140 2.124860 GGGGTCGGATTTGTCGGG 60.125 66.667 0.00 0.00 0.00 5.14
140 141 0.814010 GATGGGGTCGGATTTGTCGG 60.814 60.000 0.00 0.00 0.00 4.79
141 142 0.814010 GGATGGGGTCGGATTTGTCG 60.814 60.000 0.00 0.00 0.00 4.35
142 143 0.546598 AGGATGGGGTCGGATTTGTC 59.453 55.000 0.00 0.00 0.00 3.18
143 144 1.887797 TAGGATGGGGTCGGATTTGT 58.112 50.000 0.00 0.00 0.00 2.83
144 145 2.949644 GTTTAGGATGGGGTCGGATTTG 59.050 50.000 0.00 0.00 0.00 2.32
145 146 2.092049 GGTTTAGGATGGGGTCGGATTT 60.092 50.000 0.00 0.00 0.00 2.17
146 147 1.493446 GGTTTAGGATGGGGTCGGATT 59.507 52.381 0.00 0.00 0.00 3.01
147 148 1.137697 GGTTTAGGATGGGGTCGGAT 58.862 55.000 0.00 0.00 0.00 4.18
148 149 0.252789 TGGTTTAGGATGGGGTCGGA 60.253 55.000 0.00 0.00 0.00 4.55
149 150 0.843984 ATGGTTTAGGATGGGGTCGG 59.156 55.000 0.00 0.00 0.00 4.79
150 151 1.202770 GGATGGTTTAGGATGGGGTCG 60.203 57.143 0.00 0.00 0.00 4.79
151 152 1.145119 GGGATGGTTTAGGATGGGGTC 59.855 57.143 0.00 0.00 0.00 4.46
152 153 1.231963 GGGATGGTTTAGGATGGGGT 58.768 55.000 0.00 0.00 0.00 4.95
153 154 1.231018 TGGGATGGTTTAGGATGGGG 58.769 55.000 0.00 0.00 0.00 4.96
154 155 3.052944 TCTTTGGGATGGTTTAGGATGGG 60.053 47.826 0.00 0.00 0.00 4.00
158 159 4.564821 CGTTCTCTTTGGGATGGTTTAGGA 60.565 45.833 0.00 0.00 0.00 2.94
161 162 4.360951 ACGTTCTCTTTGGGATGGTTTA 57.639 40.909 0.00 0.00 0.00 2.01
175 176 3.735514 GCATCAGAAGAGGGTACGTTCTC 60.736 52.174 0.00 0.00 0.00 2.87
177 178 2.541556 GCATCAGAAGAGGGTACGTTC 58.458 52.381 0.00 0.00 0.00 3.95
181 182 0.872021 CGCGCATCAGAAGAGGGTAC 60.872 60.000 8.75 0.00 0.00 3.34
190 191 2.202663 GAGAGCACGCGCATCAGA 60.203 61.111 5.73 0.00 42.27 3.27
201 202 2.692557 GCTAAGACATGAGAGGAGAGCA 59.307 50.000 0.00 0.00 0.00 4.26
202 203 2.035832 GGCTAAGACATGAGAGGAGAGC 59.964 54.545 0.00 0.00 0.00 4.09
214 215 2.260434 GTGCGGACGGCTAAGACA 59.740 61.111 6.55 0.00 44.05 3.41
228 229 2.270297 GACCCAACATCCATGCGTGC 62.270 60.000 0.00 0.00 0.00 5.34
230 231 0.034186 ATGACCCAACATCCATGCGT 60.034 50.000 0.00 0.00 0.00 5.24
305 307 0.040058 TGCTGGCCAATGTGATCCTT 59.960 50.000 7.01 0.00 0.00 3.36
322 324 0.737219 GTCATCCATGAGGCTTGTGC 59.263 55.000 0.00 0.00 37.51 4.57
340 343 4.040829 TGATGATCCATTCCTTAGCATCGT 59.959 41.667 0.00 0.00 34.85 3.73
378 385 6.275335 CAATAATGAATGAATTGAGCGGGTT 58.725 36.000 0.00 0.00 33.38 4.11
379 386 5.221303 CCAATAATGAATGAATTGAGCGGGT 60.221 40.000 0.00 0.00 33.38 5.28
380 387 5.224888 CCAATAATGAATGAATTGAGCGGG 58.775 41.667 0.00 0.00 33.38 6.13
381 388 4.682860 GCCAATAATGAATGAATTGAGCGG 59.317 41.667 0.00 0.00 33.38 5.52
539 789 2.597903 GCCCCCTTCACCCATCTC 59.402 66.667 0.00 0.00 0.00 2.75
549 799 1.987368 TCCTAGTAAAAACGCCCCCTT 59.013 47.619 0.00 0.00 0.00 3.95
555 805 8.193250 TCATTTATCTGTCCTAGTAAAAACGC 57.807 34.615 0.00 0.00 0.00 4.84
663 915 0.537188 GATCGTCTCCAAGGGCAAGA 59.463 55.000 0.00 0.00 0.00 3.02
828 1082 6.147821 GCACTGAGAGAGCTAAACAACAATTA 59.852 38.462 0.00 0.00 0.00 1.40
868 1131 2.004583 TCTGAAATCCGTAACCGCAG 57.995 50.000 0.00 0.00 0.00 5.18
966 1229 1.360852 TGGGTTACGGGGTAGGAACTA 59.639 52.381 0.00 0.00 41.75 2.24
967 1230 0.116940 TGGGTTACGGGGTAGGAACT 59.883 55.000 0.00 0.00 46.37 3.01
968 1231 0.983467 TTGGGTTACGGGGTAGGAAC 59.017 55.000 0.00 0.00 0.00 3.62
1241 2283 3.326385 ATGGGGCCGTGGAGGTAGA 62.326 63.158 0.00 0.00 43.70 2.59
1296 2340 0.834687 ACTAAGAACGGGTGCTGGGA 60.835 55.000 0.00 0.00 0.00 4.37
1305 2349 4.213482 CCCAGACTTTGAAACTAAGAACGG 59.787 45.833 0.00 0.00 0.00 4.44
1335 2379 4.246712 ACGACTCCTAAATGAGGTAGGA 57.753 45.455 0.00 0.51 46.76 2.94
1336 2380 4.645588 AGAACGACTCCTAAATGAGGTAGG 59.354 45.833 0.00 0.00 46.76 3.18
1338 2382 6.888632 ACTAAGAACGACTCCTAAATGAGGTA 59.111 38.462 0.00 0.00 46.76 3.08
1339 2383 5.715753 ACTAAGAACGACTCCTAAATGAGGT 59.284 40.000 0.00 0.00 46.76 3.85
1341 2385 7.091443 ACAACTAAGAACGACTCCTAAATGAG 58.909 38.462 0.00 0.00 38.37 2.90
1342 2386 6.989659 ACAACTAAGAACGACTCCTAAATGA 58.010 36.000 0.00 0.00 0.00 2.57
1343 2387 7.091443 AGACAACTAAGAACGACTCCTAAATG 58.909 38.462 0.00 0.00 0.00 2.32
1344 2388 7.229581 AGACAACTAAGAACGACTCCTAAAT 57.770 36.000 0.00 0.00 0.00 1.40
1350 2394 8.745464 ATTTAGAAGACAACTAAGAACGACTC 57.255 34.615 0.00 0.00 32.59 3.36
1372 2416 9.783081 GGGATGGAATTTCAAGCAATATAATTT 57.217 29.630 0.00 0.00 0.00 1.82
1379 2423 2.159057 GCGGGATGGAATTTCAAGCAAT 60.159 45.455 0.00 0.00 0.00 3.56
1387 2431 0.251916 TGAGTCGCGGGATGGAATTT 59.748 50.000 6.13 0.00 0.00 1.82
1432 2476 3.368248 ACTCAGCCAAAATGCATGGTAT 58.632 40.909 0.00 0.00 40.23 2.73
1439 2507 0.599558 TGCAGACTCAGCCAAAATGC 59.400 50.000 0.00 0.00 0.00 3.56
1559 2632 3.941483 CCCTTACAGAAACTACCTGCATG 59.059 47.826 0.00 0.00 35.14 4.06
1745 2818 8.713271 CAACTAGAACCTTGAGACAGAAAATAC 58.287 37.037 0.00 0.00 0.00 1.89
1788 2861 6.535540 TCTGGTAGTATAAAACAGTGCCAAA 58.464 36.000 0.00 0.00 0.00 3.28
1795 2868 6.823689 ACATTGCCTCTGGTAGTATAAAACAG 59.176 38.462 0.00 0.00 0.00 3.16
1819 2892 0.319405 AGGGTACGGTAACTGTGCAC 59.681 55.000 10.75 10.75 31.56 4.57
1828 2901 5.592688 ACGCTTATTAAACTAGGGTACGGTA 59.407 40.000 0.00 0.00 33.90 4.02
1868 2944 9.443283 GATAAGCAAAATTGAACTAGCAGTATG 57.557 33.333 0.00 0.00 40.87 2.39
1870 2946 8.560355 TGATAAGCAAAATTGAACTAGCAGTA 57.440 30.769 0.00 0.00 0.00 2.74
2053 3130 7.178983 ACCATACATCATTTCCAAGTGATTTGT 59.821 33.333 0.00 0.00 32.98 2.83
2179 3268 1.560505 GGTAAACCAGGACCGAGGTA 58.439 55.000 11.48 0.00 37.07 3.08
2180 3269 1.196766 GGGTAAACCAGGACCGAGGT 61.197 60.000 5.89 5.89 40.61 3.85
2181 3270 1.600638 GGGTAAACCAGGACCGAGG 59.399 63.158 0.81 4.63 39.85 4.63
2182 3271 1.600638 GGGGTAAACCAGGACCGAG 59.399 63.158 0.81 0.00 42.91 4.63
2183 3272 1.919816 GGGGGTAAACCAGGACCGA 60.920 63.158 0.81 0.00 42.91 4.69
2184 3273 2.672908 GGGGGTAAACCAGGACCG 59.327 66.667 0.81 0.00 42.91 4.79
2202 3291 3.121738 ACTTTGACCCAAACTACGAGG 57.878 47.619 0.00 0.00 0.00 4.63
2203 3292 4.573201 TCAAACTTTGACCCAAACTACGAG 59.427 41.667 0.00 0.00 34.08 4.18
2204 3293 4.515361 TCAAACTTTGACCCAAACTACGA 58.485 39.130 0.00 0.00 34.08 3.43
2205 3294 4.886247 TCAAACTTTGACCCAAACTACG 57.114 40.909 0.00 0.00 34.08 3.51
2216 3305 7.581213 AGTCAAATATGTGGTCAAACTTTGA 57.419 32.000 0.00 0.00 37.33 2.69
2217 3306 7.538678 GCTAGTCAAATATGTGGTCAAACTTTG 59.461 37.037 0.00 0.00 0.00 2.77
2218 3307 7.230510 TGCTAGTCAAATATGTGGTCAAACTTT 59.769 33.333 0.00 0.00 0.00 2.66
2219 3308 6.714810 TGCTAGTCAAATATGTGGTCAAACTT 59.285 34.615 0.00 0.00 0.00 2.66
2220 3309 6.237901 TGCTAGTCAAATATGTGGTCAAACT 58.762 36.000 0.00 0.00 0.00 2.66
2221 3310 6.494893 TGCTAGTCAAATATGTGGTCAAAC 57.505 37.500 0.00 0.00 0.00 2.93
2222 3311 7.517614 TTTGCTAGTCAAATATGTGGTCAAA 57.482 32.000 7.86 0.00 39.58 2.69
2223 3312 7.517614 TTTTGCTAGTCAAATATGTGGTCAA 57.482 32.000 11.44 0.00 43.53 3.18
2224 3313 7.176515 ACATTTTGCTAGTCAAATATGTGGTCA 59.823 33.333 21.57 7.66 43.53 4.02
2225 3314 7.538575 ACATTTTGCTAGTCAAATATGTGGTC 58.461 34.615 21.57 0.00 43.53 4.02
2226 3315 7.466746 ACATTTTGCTAGTCAAATATGTGGT 57.533 32.000 21.57 9.15 43.53 4.16
2227 3316 9.853555 TTAACATTTTGCTAGTCAAATATGTGG 57.146 29.630 22.15 9.19 43.53 4.17
2233 3322 8.875803 CATGCATTAACATTTTGCTAGTCAAAT 58.124 29.630 0.00 4.82 43.53 2.32
2234 3323 7.871973 ACATGCATTAACATTTTGCTAGTCAAA 59.128 29.630 0.00 7.86 42.50 2.69
2235 3324 7.377398 ACATGCATTAACATTTTGCTAGTCAA 58.623 30.769 0.00 0.00 37.28 3.18
2236 3325 6.923012 ACATGCATTAACATTTTGCTAGTCA 58.077 32.000 0.00 0.00 37.28 3.41
2237 3326 7.028962 TGACATGCATTAACATTTTGCTAGTC 58.971 34.615 0.00 12.40 39.27 2.59
2238 3327 6.923012 TGACATGCATTAACATTTTGCTAGT 58.077 32.000 0.00 0.00 37.28 2.57
2239 3328 6.020121 GCTGACATGCATTAACATTTTGCTAG 60.020 38.462 0.00 0.00 37.28 3.42
2240 3329 5.806502 GCTGACATGCATTAACATTTTGCTA 59.193 36.000 0.00 0.00 37.28 3.49
2241 3330 4.628333 GCTGACATGCATTAACATTTTGCT 59.372 37.500 0.00 0.00 37.28 3.91
2242 3331 4.389382 TGCTGACATGCATTAACATTTTGC 59.611 37.500 0.00 0.00 38.12 3.68
2243 3332 6.469139 TTGCTGACATGCATTAACATTTTG 57.531 33.333 0.00 0.00 42.96 2.44
2244 3333 7.493743 TTTTGCTGACATGCATTAACATTTT 57.506 28.000 0.00 0.00 42.96 1.82
2245 3334 7.493743 TTTTTGCTGACATGCATTAACATTT 57.506 28.000 0.00 0.00 42.96 2.32
2246 3335 7.675962 ATTTTTGCTGACATGCATTAACATT 57.324 28.000 0.00 0.00 42.96 2.71
2247 3336 7.675962 AATTTTTGCTGACATGCATTAACAT 57.324 28.000 0.00 0.00 42.96 2.71
2248 3337 8.774890 ATAATTTTTGCTGACATGCATTAACA 57.225 26.923 0.00 0.00 42.96 2.41
2252 3341 9.386010 ACAATATAATTTTTGCTGACATGCATT 57.614 25.926 0.00 0.00 42.96 3.56
2253 3342 8.951787 ACAATATAATTTTTGCTGACATGCAT 57.048 26.923 0.00 0.00 42.96 3.96
2254 3343 8.657729 CAACAATATAATTTTTGCTGACATGCA 58.342 29.630 0.00 0.00 41.65 3.96
2255 3344 8.117988 CCAACAATATAATTTTTGCTGACATGC 58.882 33.333 0.00 0.00 0.00 4.06
2256 3345 9.368674 TCCAACAATATAATTTTTGCTGACATG 57.631 29.630 0.00 0.00 0.00 3.21
2258 3347 9.941325 AATCCAACAATATAATTTTTGCTGACA 57.059 25.926 0.00 0.00 0.00 3.58
2260 3349 9.299963 CGAATCCAACAATATAATTTTTGCTGA 57.700 29.630 0.00 0.00 0.00 4.26
2261 3350 9.086336 ACGAATCCAACAATATAATTTTTGCTG 57.914 29.630 0.00 0.00 0.00 4.41
2274 3363 8.956426 ACTACATTCAAATACGAATCCAACAAT 58.044 29.630 0.00 0.00 33.27 2.71
2275 3364 8.330466 ACTACATTCAAATACGAATCCAACAA 57.670 30.769 0.00 0.00 33.27 2.83
2276 3365 7.915293 ACTACATTCAAATACGAATCCAACA 57.085 32.000 0.00 0.00 33.27 3.33
2277 3366 9.274065 GAAACTACATTCAAATACGAATCCAAC 57.726 33.333 0.00 0.00 33.27 3.77
2278 3367 8.455682 GGAAACTACATTCAAATACGAATCCAA 58.544 33.333 0.00 0.00 33.27 3.53
2279 3368 7.608376 TGGAAACTACATTCAAATACGAATCCA 59.392 33.333 0.00 0.00 33.27 3.41
2280 3369 7.981142 TGGAAACTACATTCAAATACGAATCC 58.019 34.615 0.00 0.00 33.27 3.01
2358 3447 7.717875 CCCCTCGTATTTTAGGTCATATTTTGA 59.282 37.037 0.00 0.00 0.00 2.69
2359 3448 7.040686 CCCCCTCGTATTTTAGGTCATATTTTG 60.041 40.741 0.00 0.00 0.00 2.44
2360 3449 7.002276 CCCCCTCGTATTTTAGGTCATATTTT 58.998 38.462 0.00 0.00 0.00 1.82
2361 3450 6.540083 CCCCCTCGTATTTTAGGTCATATTT 58.460 40.000 0.00 0.00 0.00 1.40
2362 3451 6.123045 CCCCCTCGTATTTTAGGTCATATT 57.877 41.667 0.00 0.00 0.00 1.28
2363 3452 5.757099 CCCCCTCGTATTTTAGGTCATAT 57.243 43.478 0.00 0.00 0.00 1.78
2382 3471 0.545171 GTCCTGGTTTACTAGCCCCC 59.455 60.000 0.00 0.00 0.00 5.40
2383 3472 0.177373 CGTCCTGGTTTACTAGCCCC 59.823 60.000 0.00 0.00 0.00 5.80
2384 3473 0.177373 CCGTCCTGGTTTACTAGCCC 59.823 60.000 0.00 0.00 0.00 5.19
2385 3474 1.136500 CTCCGTCCTGGTTTACTAGCC 59.864 57.143 0.00 0.00 39.52 3.93
2386 3475 1.136500 CCTCCGTCCTGGTTTACTAGC 59.864 57.143 0.00 0.00 39.52 3.42
2387 3476 2.454538 ACCTCCGTCCTGGTTTACTAG 58.545 52.381 0.00 0.00 39.52 2.57
2388 3477 2.610438 ACCTCCGTCCTGGTTTACTA 57.390 50.000 0.00 0.00 39.52 1.82
2389 3478 2.225217 ACTACCTCCGTCCTGGTTTACT 60.225 50.000 0.00 0.00 39.52 2.24
2390 3479 2.174360 ACTACCTCCGTCCTGGTTTAC 58.826 52.381 0.00 0.00 39.52 2.01
2391 3480 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
2392 3481 2.174360 GTACTACCTCCGTCCTGGTTT 58.826 52.381 0.00 0.00 39.52 3.27
2393 3482 1.076024 TGTACTACCTCCGTCCTGGTT 59.924 52.381 0.00 0.00 39.52 3.67
2394 3483 0.700564 TGTACTACCTCCGTCCTGGT 59.299 55.000 0.00 0.00 39.52 4.00
2395 3484 1.955080 GATGTACTACCTCCGTCCTGG 59.045 57.143 0.00 0.00 40.09 4.45
2396 3485 2.933573 AGATGTACTACCTCCGTCCTG 58.066 52.381 0.00 0.00 0.00 3.86
2397 3486 3.666345 AAGATGTACTACCTCCGTCCT 57.334 47.619 0.00 0.00 0.00 3.85
2398 3487 4.886489 ACTTAAGATGTACTACCTCCGTCC 59.114 45.833 10.09 0.00 0.00 4.79
2399 3488 6.448207 AACTTAAGATGTACTACCTCCGTC 57.552 41.667 10.09 0.00 0.00 4.79
2400 3489 6.847421 AAACTTAAGATGTACTACCTCCGT 57.153 37.500 10.09 0.00 0.00 4.69
2401 3490 7.318141 TCAAAACTTAAGATGTACTACCTCCG 58.682 38.462 10.09 0.00 0.00 4.63
2402 3491 9.668497 AATCAAAACTTAAGATGTACTACCTCC 57.332 33.333 10.09 0.00 0.00 4.30
2593 3687 3.283751 AGACGAATCTACAGAGAGTGGG 58.716 50.000 0.00 0.00 34.35 4.61
2597 3691 6.128145 TGTTCTCAAGACGAATCTACAGAGAG 60.128 42.308 0.00 0.00 38.08 3.20
2598 3692 5.705905 TGTTCTCAAGACGAATCTACAGAGA 59.294 40.000 0.00 0.00 36.49 3.10
2673 3771 0.620410 TGGACAGTTCCCCCGATGAT 60.620 55.000 0.00 0.00 42.01 2.45
3038 4141 8.414003 ACACGTCTACACATAATGATAGATTGT 58.586 33.333 0.00 0.00 0.00 2.71
3039 4142 8.803201 ACACGTCTACACATAATGATAGATTG 57.197 34.615 0.00 0.00 0.00 2.67
3050 4153 4.259356 AGACAGCTACACGTCTACACATA 58.741 43.478 2.74 0.00 40.67 2.29
3084 4187 6.807230 CGCCGATTTACTTAAGATGCTATACT 59.193 38.462 10.09 0.00 0.00 2.12
3105 4208 4.099824 GTCCCATACAAAATTTTACGCCG 58.900 43.478 2.44 0.00 0.00 6.46
3112 4215 7.942341 TCACTAGTCAAGTCCCATACAAAATTT 59.058 33.333 0.00 0.00 35.76 1.82
3113 4216 7.458397 TCACTAGTCAAGTCCCATACAAAATT 58.542 34.615 0.00 0.00 35.76 1.82
3123 4226 4.254492 GTGGATTTCACTAGTCAAGTCCC 58.746 47.826 16.70 6.26 42.86 4.46
3129 4232 5.939883 CCAAGAATGTGGATTTCACTAGTCA 59.060 40.000 0.00 0.00 46.20 3.41
3130 4233 5.163713 GCCAAGAATGTGGATTTCACTAGTC 60.164 44.000 0.00 0.00 46.20 2.59
3132 4235 4.701651 TGCCAAGAATGTGGATTTCACTAG 59.298 41.667 0.00 0.00 46.20 2.57
3134 4237 3.499338 TGCCAAGAATGTGGATTTCACT 58.501 40.909 0.00 0.00 46.20 3.41
3148 4251 0.994247 ACATCATGACCCTGCCAAGA 59.006 50.000 0.00 0.00 0.00 3.02
3154 4257 6.764308 AATTGTTAGAACATCATGACCCTG 57.236 37.500 0.00 0.00 38.95 4.45
3157 4260 7.396540 AGGAAATTGTTAGAACATCATGACC 57.603 36.000 0.00 0.00 38.95 4.02
3158 4261 7.121168 TGGAGGAAATTGTTAGAACATCATGAC 59.879 37.037 0.00 0.00 38.95 3.06
3160 4263 7.395190 TGGAGGAAATTGTTAGAACATCATG 57.605 36.000 0.00 0.00 38.95 3.07
3223 4327 7.642669 AGAAAAATGACAACTGTGTAGATGTG 58.357 34.615 0.00 0.00 39.68 3.21
3233 4337 8.277713 CCAGCAAATTTAGAAAAATGACAACTG 58.722 33.333 0.00 0.00 35.46 3.16
3239 4343 7.153985 CAGGACCAGCAAATTTAGAAAAATGA 58.846 34.615 0.00 0.00 35.46 2.57
3246 4350 3.153369 TGCAGGACCAGCAAATTTAGA 57.847 42.857 9.45 0.00 39.39 2.10
3247 4351 5.779529 ATATGCAGGACCAGCAAATTTAG 57.220 39.130 16.23 0.00 46.27 1.85
3248 4352 7.652524 TTTATATGCAGGACCAGCAAATTTA 57.347 32.000 16.23 4.06 46.27 1.40
3249 4353 6.543430 TTTATATGCAGGACCAGCAAATTT 57.457 33.333 16.23 1.67 46.27 1.82
3261 4365 3.129287 GCCCGGATCATTTTATATGCAGG 59.871 47.826 0.73 0.00 0.00 4.85
3277 4381 2.045438 ATGCAATTGTCGCCCGGA 60.045 55.556 0.73 0.00 0.00 5.14
3334 4438 6.015350 CGACATAAGATATAAGTCAGGGTGGT 60.015 42.308 0.00 0.00 0.00 4.16
3379 4485 2.414481 CTCATGAGCGACTCCAAAGTTG 59.586 50.000 10.38 0.00 39.58 3.16
3400 4506 3.733024 TTGGAATTAATCGACACGTGC 57.267 42.857 17.22 7.72 0.00 5.34
3420 4526 4.918588 ACCCTCATTCGTAGGTTTTGAAT 58.081 39.130 0.00 0.00 32.77 2.57
3451 4557 6.547510 TGCTAGCTGTATTCTCTCTGTTCATA 59.452 38.462 17.23 0.00 0.00 2.15
3535 4641 8.959705 AGATTTAGACGAAATAAAACTAGGGG 57.040 34.615 0.00 0.00 37.90 4.79
3545 4651 6.474140 TGCCCAGTAGATTTAGACGAAATA 57.526 37.500 0.00 0.00 37.90 1.40
3550 4656 4.051922 GTCATGCCCAGTAGATTTAGACG 58.948 47.826 0.00 0.00 0.00 4.18
3572 4678 7.915397 AGTTTTAAGTTCTAACTGTGCACAATG 59.085 33.333 21.98 12.82 39.66 2.82
3576 4682 8.610035 AGTAAGTTTTAAGTTCTAACTGTGCAC 58.390 33.333 10.75 10.75 39.66 4.57
3612 4721 1.127582 GACAGCTTCGCTTACTGCAAG 59.872 52.381 0.00 0.00 43.06 4.01
3613 4722 1.148310 GACAGCTTCGCTTACTGCAA 58.852 50.000 0.00 0.00 43.06 4.08
3783 4892 2.936919 TCTGCTGTGGACATTGAACT 57.063 45.000 0.00 0.00 0.00 3.01
3881 4990 3.170717 AGGATGGGAGTCGAAACTAACA 58.829 45.455 0.00 0.00 35.28 2.41
3928 5037 0.394352 ATTTCCGGACCAGTGGATGC 60.394 55.000 18.40 4.64 33.42 3.91
3959 5073 2.825086 AAAACATCGCATAGCCGTTC 57.175 45.000 0.00 0.00 0.00 3.95
3962 5076 2.539547 CCTGAAAAACATCGCATAGCCG 60.540 50.000 0.00 0.00 0.00 5.52
3997 5111 1.079543 CAGGTGTTCGGCCTCTGAG 60.080 63.158 0.00 0.00 33.31 3.35
4011 5125 1.271325 TGAACATGTTCATCCGCAGGT 60.271 47.619 32.36 0.00 46.49 4.00
4060 5174 2.501723 CCCTCGAAAATCTCTTCTCCCA 59.498 50.000 0.00 0.00 0.00 4.37
4115 5229 2.578021 TGAGCTAAAATCTTCCCCTGCT 59.422 45.455 0.00 0.00 0.00 4.24
4150 5264 7.136203 AGATTGGAGAGTACCCTAGAGAAAAT 58.864 38.462 0.00 0.00 0.00 1.82
4155 5269 5.450453 TGAAGATTGGAGAGTACCCTAGAG 58.550 45.833 0.00 0.00 0.00 2.43
4157 5271 5.450453 TCTGAAGATTGGAGAGTACCCTAG 58.550 45.833 0.00 0.00 0.00 3.02
4169 5283 2.295885 GCCACCATCTCTGAAGATTGG 58.704 52.381 7.54 7.54 40.38 3.16
4228 5345 2.022195 TCATGACACTACCGCCTACTC 58.978 52.381 0.00 0.00 0.00 2.59
4231 5348 1.686587 CCATCATGACACTACCGCCTA 59.313 52.381 0.00 0.00 0.00 3.93
4273 5390 8.890410 TCATCCTCATCATCATCAGATACTAA 57.110 34.615 0.00 0.00 31.88 2.24
4282 5399 5.295540 CAGCATCATCATCCTCATCATCATC 59.704 44.000 0.00 0.00 0.00 2.92
4283 5400 5.045578 TCAGCATCATCATCCTCATCATCAT 60.046 40.000 0.00 0.00 0.00 2.45
4284 5401 4.286032 TCAGCATCATCATCCTCATCATCA 59.714 41.667 0.00 0.00 0.00 3.07
4285 5402 4.833390 TCAGCATCATCATCCTCATCATC 58.167 43.478 0.00 0.00 0.00 2.92
4286 5403 4.910458 TCAGCATCATCATCCTCATCAT 57.090 40.909 0.00 0.00 0.00 2.45
4287 5404 4.286032 TCATCAGCATCATCATCCTCATCA 59.714 41.667 0.00 0.00 0.00 3.07
4288 5405 4.833390 TCATCAGCATCATCATCCTCATC 58.167 43.478 0.00 0.00 0.00 2.92
4289 5406 4.910458 TCATCAGCATCATCATCCTCAT 57.090 40.909 0.00 0.00 0.00 2.90
4290 5407 4.910458 ATCATCAGCATCATCATCCTCA 57.090 40.909 0.00 0.00 0.00 3.86
4291 5408 5.585445 GGTTATCATCAGCATCATCATCCTC 59.415 44.000 0.00 0.00 0.00 3.71
4292 5409 5.251005 AGGTTATCATCAGCATCATCATCCT 59.749 40.000 0.00 0.00 0.00 3.24
4293 5410 5.498393 AGGTTATCATCAGCATCATCATCC 58.502 41.667 0.00 0.00 0.00 3.51
4294 5411 7.450124 AAAGGTTATCATCAGCATCATCATC 57.550 36.000 0.00 0.00 0.00 2.92
4295 5412 7.834881 AAAAGGTTATCATCAGCATCATCAT 57.165 32.000 0.00 0.00 0.00 2.45
4296 5413 8.623903 GTTAAAAGGTTATCATCAGCATCATCA 58.376 33.333 0.00 0.00 0.00 3.07
4297 5414 8.844244 AGTTAAAAGGTTATCATCAGCATCATC 58.156 33.333 0.00 0.00 0.00 2.92
4302 5419 8.635765 AAAGAGTTAAAAGGTTATCATCAGCA 57.364 30.769 0.00 0.00 0.00 4.41
4334 5451 3.466836 TCAGAGTGAAACGAACATGCTT 58.533 40.909 0.00 0.00 45.86 3.91
4335 5452 3.062763 CTCAGAGTGAAACGAACATGCT 58.937 45.455 0.00 0.00 45.86 3.79
4336 5453 2.802816 ACTCAGAGTGAAACGAACATGC 59.197 45.455 0.91 0.00 45.86 4.06
4388 5508 3.066760 CCTTGTTTCTGAACCCTTGACAC 59.933 47.826 0.00 0.00 34.80 3.67
4596 5737 7.959658 TTGTTCAGAATATCATGTGGGATTT 57.040 32.000 0.00 0.00 0.00 2.17
4609 5755 5.827797 GCCCACCTTGATATTGTTCAGAATA 59.172 40.000 0.00 0.00 0.00 1.75
4637 5795 1.333619 CCGTGCCCCTATTTTTCATCG 59.666 52.381 0.00 0.00 0.00 3.84
4639 5797 2.818751 TCCGTGCCCCTATTTTTCAT 57.181 45.000 0.00 0.00 0.00 2.57
4649 5807 1.087771 CGAGTTGTTATCCGTGCCCC 61.088 60.000 0.00 0.00 0.00 5.80
4653 5811 0.719465 GTGCCGAGTTGTTATCCGTG 59.281 55.000 0.00 0.00 0.00 4.94
4655 5814 1.127951 GTTGTGCCGAGTTGTTATCCG 59.872 52.381 0.00 0.00 0.00 4.18
4658 5817 1.796459 GACGTTGTGCCGAGTTGTTAT 59.204 47.619 0.00 0.00 0.00 1.89
4660 5819 0.741574 TGACGTTGTGCCGAGTTGTT 60.742 50.000 0.00 0.00 0.00 2.83
4670 5829 0.661020 GGAACCACCTTGACGTTGTG 59.339 55.000 0.00 0.00 35.41 3.33
4715 5874 3.199880 AGAATTCATTCGCCGGAGAAT 57.800 42.857 25.64 25.64 41.56 2.40
4724 5883 7.377766 TCCTTCAGGTTTAAGAATTCATTCG 57.622 36.000 8.44 0.00 37.90 3.34
4811 5982 1.228398 TGGGTTCGATTTGGCTGCA 60.228 52.632 0.50 0.00 0.00 4.41
4814 5985 0.953960 GTCGTGGGTTCGATTTGGCT 60.954 55.000 0.00 0.00 41.78 4.75
4815 5986 1.500396 GTCGTGGGTTCGATTTGGC 59.500 57.895 0.00 0.00 41.78 4.52
4898 6076 3.257561 CATTGCGGCGACTCCTCG 61.258 66.667 12.98 0.00 43.28 4.63
4899 6077 2.650813 ATCCATTGCGGCGACTCCTC 62.651 60.000 12.98 0.00 33.14 3.71
4900 6078 2.650813 GATCCATTGCGGCGACTCCT 62.651 60.000 12.98 0.00 33.14 3.69
4901 6079 2.203070 ATCCATTGCGGCGACTCC 60.203 61.111 12.98 0.00 33.14 3.85
4902 6080 2.247437 GGATCCATTGCGGCGACTC 61.247 63.158 12.98 0.00 33.14 3.36
4903 6081 2.203070 GGATCCATTGCGGCGACT 60.203 61.111 12.98 0.00 33.14 4.18
4904 6082 3.640000 CGGATCCATTGCGGCGAC 61.640 66.667 12.98 2.02 35.23 5.19
5014 6192 1.737008 GAAGACGGCGGTGAAGTCC 60.737 63.158 13.24 0.00 35.65 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.