Multiple sequence alignment - TraesCS3D01G122500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G122500 chr3D 100.000 3398 0 0 1 3398 80418976 80415579 0.000000e+00 6276
1 TraesCS3D01G122500 chr3D 97.252 655 13 2 2612 3262 143157450 143158103 0.000000e+00 1105
2 TraesCS3D01G122500 chr3D 98.438 320 5 0 1 320 520572559 520572878 6.370000e-157 564
3 TraesCS3D01G122500 chr3D 97.508 321 4 2 1 321 13833517 13833833 2.310000e-151 545
4 TraesCS3D01G122500 chr3D 76.364 1045 192 35 1044 2047 80577580 80576550 8.410000e-141 510
5 TraesCS3D01G122500 chr3D 77.756 517 86 18 1541 2047 80916901 80916404 1.190000e-74 291
6 TraesCS3D01G122500 chr3D 77.228 505 92 14 1445 1945 80629983 80629498 1.200000e-69 274
7 TraesCS3D01G122500 chr3D 79.420 379 68 5 1633 2004 80600693 80600318 3.360000e-65 259
8 TraesCS3D01G122500 chr3D 97.241 145 2 2 3256 3398 143158319 143158463 9.420000e-61 244
9 TraesCS3D01G122500 chr3B 91.045 2278 137 22 318 2577 126300192 126297964 0.000000e+00 3014
10 TraesCS3D01G122500 chr3B 74.964 1374 267 53 1043 2391 126310720 126309399 8.230000e-156 560
11 TraesCS3D01G122500 chr3B 75.522 1005 194 32 1081 2047 126375268 126374278 2.410000e-121 446
12 TraesCS3D01G122500 chr3B 76.543 567 107 14 1445 2004 126400301 126399754 1.540000e-73 287
13 TraesCS3D01G122500 chr3B 75.482 571 109 19 1445 2004 126458524 126457974 2.020000e-62 250
14 TraesCS3D01G122500 chr1D 97.710 655 11 1 2612 3262 466100320 466100974 0.000000e+00 1123
15 TraesCS3D01G122500 chr1D 99.371 318 2 0 2 319 421588251 421587934 8.180000e-161 577
16 TraesCS3D01G122500 chr1D 97.241 145 2 2 3256 3398 466101188 466101332 9.420000e-61 244
17 TraesCS3D01G122500 chr5D 96.947 655 16 1 2612 3262 35661311 35660657 0.000000e+00 1096
18 TraesCS3D01G122500 chr5D 99.373 319 2 0 1 319 16192132 16192450 2.270000e-161 579
19 TraesCS3D01G122500 chr5D 95.862 145 4 2 3256 3398 35660441 35660297 2.040000e-57 233
20 TraesCS3D01G122500 chr2D 96.794 655 17 1 2612 3262 575333811 575333157 0.000000e+00 1090
21 TraesCS3D01G122500 chr2D 84.018 657 92 10 1772 2422 79079408 79080057 1.340000e-173 619
22 TraesCS3D01G122500 chr2D 98.746 319 4 0 1 319 621143135 621142817 4.920000e-158 568
23 TraesCS3D01G122500 chr2D 97.492 319 7 1 1 319 411614990 411614673 8.290000e-151 544
24 TraesCS3D01G122500 chr2D 97.241 145 2 2 3256 3398 575332941 575332797 9.420000e-61 244
25 TraesCS3D01G122500 chr2D 77.947 263 36 18 1632 1886 605386636 605386388 9.830000e-31 145
26 TraesCS3D01G122500 chr4A 96.641 655 18 1 2612 3262 675794458 675795112 0.000000e+00 1085
27 TraesCS3D01G122500 chr4A 72.406 1388 277 64 1021 2367 665318825 665317503 9.030000e-91 344
28 TraesCS3D01G122500 chr5B 96.451 648 19 1 2619 3262 325799822 325799175 0.000000e+00 1066
29 TraesCS3D01G122500 chr5B 79.808 312 45 14 1562 1868 24104715 24104417 9.550000e-51 211
30 TraesCS3D01G122500 chr6B 90.569 668 41 6 2612 3271 239728697 239728044 0.000000e+00 865
31 TraesCS3D01G122500 chr6B 74.905 789 122 48 1091 1868 683371748 683372471 1.190000e-74 291
32 TraesCS3D01G122500 chr6B 89.899 99 8 2 1091 1188 683317136 683317233 3.560000e-25 126
33 TraesCS3D01G122500 chr7D 96.367 523 15 1 2743 3261 579995522 579996044 0.000000e+00 857
34 TraesCS3D01G122500 chr7D 73.851 1392 256 72 1021 2370 50428887 50427562 4.000000e-124 455
35 TraesCS3D01G122500 chr4B 93.299 582 38 1 2622 3202 652396761 652397342 0.000000e+00 857
36 TraesCS3D01G122500 chr4B 95.139 144 6 1 3256 3398 652397592 652397735 3.410000e-55 226
37 TraesCS3D01G122500 chr4D 88.550 655 70 3 2612 3262 43608708 43609361 0.000000e+00 789
38 TraesCS3D01G122500 chr6D 98.750 320 4 0 1 320 12146430 12146111 1.370000e-158 569
39 TraesCS3D01G122500 chr6D 98.442 321 5 0 1 321 465417028 465417348 1.770000e-157 566
40 TraesCS3D01G122500 chr5A 97.188 320 9 0 1 320 608228098 608227779 2.980000e-150 542
41 TraesCS3D01G122500 chr5A 74.701 1336 261 57 1091 2398 21414857 21413571 1.080000e-144 523
42 TraesCS3D01G122500 chr5A 73.298 1337 284 49 1091 2401 21418875 21420164 1.130000e-114 424
43 TraesCS3D01G122500 chr5A 95.172 145 5 2 3256 3398 287619077 287619221 9.490000e-56 228
44 TraesCS3D01G122500 chr3A 90.274 401 34 3 320 720 94133685 94133290 1.400000e-143 520
45 TraesCS3D01G122500 chr3A 80.519 385 64 6 1648 2025 94254608 94254228 5.550000e-73 285
46 TraesCS3D01G122500 chr3A 89.904 208 21 0 984 1191 94117858 94117651 5.590000e-68 268
47 TraesCS3D01G122500 chr3A 90.991 111 5 5 768 875 94132748 94132640 9.830000e-31 145
48 TraesCS3D01G122500 chr7A 73.304 1371 262 69 1043 2370 53295119 53293810 3.160000e-110 409
49 TraesCS3D01G122500 chr7A 95.862 145 4 2 3256 3398 109340980 109341124 2.040000e-57 233
50 TraesCS3D01G122500 chr6A 96.552 145 3 2 3256 3398 606096173 606096029 4.380000e-59 239
51 TraesCS3D01G122500 chr2A 96.429 140 4 1 3260 3398 594586145 594586006 2.640000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G122500 chr3D 80415579 80418976 3397 True 6276.0 6276 100.0000 1 3398 1 chr3D.!!$R1 3397
1 TraesCS3D01G122500 chr3D 143157450 143158463 1013 False 674.5 1105 97.2465 2612 3398 2 chr3D.!!$F3 786
2 TraesCS3D01G122500 chr3D 80576550 80577580 1030 True 510.0 510 76.3640 1044 2047 1 chr3D.!!$R2 1003
3 TraesCS3D01G122500 chr3B 126297964 126300192 2228 True 3014.0 3014 91.0450 318 2577 1 chr3B.!!$R1 2259
4 TraesCS3D01G122500 chr3B 126309399 126310720 1321 True 560.0 560 74.9640 1043 2391 1 chr3B.!!$R2 1348
5 TraesCS3D01G122500 chr3B 126374278 126375268 990 True 446.0 446 75.5220 1081 2047 1 chr3B.!!$R3 966
6 TraesCS3D01G122500 chr3B 126399754 126400301 547 True 287.0 287 76.5430 1445 2004 1 chr3B.!!$R4 559
7 TraesCS3D01G122500 chr3B 126457974 126458524 550 True 250.0 250 75.4820 1445 2004 1 chr3B.!!$R5 559
8 TraesCS3D01G122500 chr1D 466100320 466101332 1012 False 683.5 1123 97.4755 2612 3398 2 chr1D.!!$F1 786
9 TraesCS3D01G122500 chr5D 35660297 35661311 1014 True 664.5 1096 96.4045 2612 3398 2 chr5D.!!$R1 786
10 TraesCS3D01G122500 chr2D 575332797 575333811 1014 True 667.0 1090 97.0175 2612 3398 2 chr2D.!!$R4 786
11 TraesCS3D01G122500 chr2D 79079408 79080057 649 False 619.0 619 84.0180 1772 2422 1 chr2D.!!$F1 650
12 TraesCS3D01G122500 chr4A 675794458 675795112 654 False 1085.0 1085 96.6410 2612 3262 1 chr4A.!!$F1 650
13 TraesCS3D01G122500 chr4A 665317503 665318825 1322 True 344.0 344 72.4060 1021 2367 1 chr4A.!!$R1 1346
14 TraesCS3D01G122500 chr5B 325799175 325799822 647 True 1066.0 1066 96.4510 2619 3262 1 chr5B.!!$R2 643
15 TraesCS3D01G122500 chr6B 239728044 239728697 653 True 865.0 865 90.5690 2612 3271 1 chr6B.!!$R1 659
16 TraesCS3D01G122500 chr6B 683371748 683372471 723 False 291.0 291 74.9050 1091 1868 1 chr6B.!!$F2 777
17 TraesCS3D01G122500 chr7D 579995522 579996044 522 False 857.0 857 96.3670 2743 3261 1 chr7D.!!$F1 518
18 TraesCS3D01G122500 chr7D 50427562 50428887 1325 True 455.0 455 73.8510 1021 2370 1 chr7D.!!$R1 1349
19 TraesCS3D01G122500 chr4B 652396761 652397735 974 False 541.5 857 94.2190 2622 3398 2 chr4B.!!$F1 776
20 TraesCS3D01G122500 chr4D 43608708 43609361 653 False 789.0 789 88.5500 2612 3262 1 chr4D.!!$F1 650
21 TraesCS3D01G122500 chr5A 21413571 21414857 1286 True 523.0 523 74.7010 1091 2398 1 chr5A.!!$R1 1307
22 TraesCS3D01G122500 chr5A 21418875 21420164 1289 False 424.0 424 73.2980 1091 2401 1 chr5A.!!$F1 1310
23 TraesCS3D01G122500 chr3A 94132640 94133685 1045 True 332.5 520 90.6325 320 875 2 chr3A.!!$R3 555
24 TraesCS3D01G122500 chr7A 53293810 53295119 1309 True 409.0 409 73.3040 1043 2370 1 chr7A.!!$R1 1327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1017 0.038435 CGCCAGAGCATCATCGAGAT 60.038 55.0 0.0 0.0 39.83 2.75 F
1035 1068 0.109226 GCTACGCTCTCCTTGTCGTT 60.109 55.0 0.0 0.0 36.50 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 2742 0.109086 ATCTGCACCTCGACGAACAG 60.109 55.0 0.00 4.89 0.0 3.16 R
2927 3478 0.179076 ATCATTGCGCTGGACATCGA 60.179 50.0 9.73 0.00 0.0 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.338577 GGGTGGATGTGGAAGATGAG 57.661 55.000 0.00 0.00 0.00 2.90
20 21 1.839994 GGGTGGATGTGGAAGATGAGA 59.160 52.381 0.00 0.00 0.00 3.27
21 22 2.239654 GGGTGGATGTGGAAGATGAGAA 59.760 50.000 0.00 0.00 0.00 2.87
22 23 3.539604 GGTGGATGTGGAAGATGAGAAG 58.460 50.000 0.00 0.00 0.00 2.85
23 24 3.198635 GGTGGATGTGGAAGATGAGAAGA 59.801 47.826 0.00 0.00 0.00 2.87
24 25 4.440880 GTGGATGTGGAAGATGAGAAGAG 58.559 47.826 0.00 0.00 0.00 2.85
25 26 3.118482 TGGATGTGGAAGATGAGAAGAGC 60.118 47.826 0.00 0.00 0.00 4.09
26 27 3.118482 GGATGTGGAAGATGAGAAGAGCA 60.118 47.826 0.00 0.00 0.00 4.26
27 28 4.511527 GATGTGGAAGATGAGAAGAGCAA 58.488 43.478 0.00 0.00 0.00 3.91
28 29 4.356405 TGTGGAAGATGAGAAGAGCAAA 57.644 40.909 0.00 0.00 0.00 3.68
29 30 4.321718 TGTGGAAGATGAGAAGAGCAAAG 58.678 43.478 0.00 0.00 0.00 2.77
30 31 4.202398 TGTGGAAGATGAGAAGAGCAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
31 32 4.759183 GTGGAAGATGAGAAGAGCAAAGTT 59.241 41.667 0.00 0.00 0.00 2.66
32 33 4.758674 TGGAAGATGAGAAGAGCAAAGTTG 59.241 41.667 0.00 0.00 0.00 3.16
42 43 4.741781 CAAAGTTGCGGCCGCGAG 62.742 66.667 41.73 25.85 45.51 5.03
43 44 4.980805 AAAGTTGCGGCCGCGAGA 62.981 61.111 41.73 28.49 45.51 4.04
44 45 4.980805 AAGTTGCGGCCGCGAGAA 62.981 61.111 41.73 29.36 45.51 2.87
51 52 4.214327 GGCCGCGAGAAGGAGGAG 62.214 72.222 8.23 0.00 0.00 3.69
52 53 3.141488 GCCGCGAGAAGGAGGAGA 61.141 66.667 8.23 0.00 0.00 3.71
53 54 2.711922 GCCGCGAGAAGGAGGAGAA 61.712 63.158 8.23 0.00 0.00 2.87
54 55 1.435515 CCGCGAGAAGGAGGAGAAG 59.564 63.158 8.23 0.00 0.00 2.85
55 56 1.435515 CGCGAGAAGGAGGAGAAGG 59.564 63.158 0.00 0.00 0.00 3.46
56 57 1.142965 GCGAGAAGGAGGAGAAGGC 59.857 63.158 0.00 0.00 0.00 4.35
57 58 1.326951 GCGAGAAGGAGGAGAAGGCT 61.327 60.000 0.00 0.00 0.00 4.58
58 59 2.024825 GCGAGAAGGAGGAGAAGGCTA 61.025 57.143 0.00 0.00 0.00 3.93
59 60 1.953686 CGAGAAGGAGGAGAAGGCTAG 59.046 57.143 0.00 0.00 0.00 3.42
60 61 2.316108 GAGAAGGAGGAGAAGGCTAGG 58.684 57.143 0.00 0.00 0.00 3.02
61 62 1.933765 AGAAGGAGGAGAAGGCTAGGA 59.066 52.381 0.00 0.00 0.00 2.94
62 63 2.091333 AGAAGGAGGAGAAGGCTAGGAG 60.091 54.545 0.00 0.00 0.00 3.69
63 64 1.614449 AGGAGGAGAAGGCTAGGAGA 58.386 55.000 0.00 0.00 0.00 3.71
64 65 2.152123 AGGAGGAGAAGGCTAGGAGAT 58.848 52.381 0.00 0.00 0.00 2.75
65 66 2.158325 AGGAGGAGAAGGCTAGGAGATG 60.158 54.545 0.00 0.00 0.00 2.90
66 67 2.247358 GAGGAGAAGGCTAGGAGATGG 58.753 57.143 0.00 0.00 0.00 3.51
67 68 0.684535 GGAGAAGGCTAGGAGATGGC 59.315 60.000 0.00 0.00 33.90 4.40
71 72 4.671569 GGCTAGGAGATGGCCGCG 62.672 72.222 0.00 0.00 46.69 6.46
72 73 4.671569 GCTAGGAGATGGCCGCGG 62.672 72.222 24.05 24.05 0.00 6.46
73 74 3.227276 CTAGGAGATGGCCGCGGT 61.227 66.667 28.70 6.76 0.00 5.68
74 75 2.762459 TAGGAGATGGCCGCGGTT 60.762 61.111 28.70 12.38 0.00 4.44
75 76 2.978452 CTAGGAGATGGCCGCGGTTG 62.978 65.000 28.70 0.72 0.00 3.77
79 80 3.825611 GATGGCCGCGGTTGCAAT 61.826 61.111 28.70 11.61 42.97 3.56
80 81 4.132441 ATGGCCGCGGTTGCAATG 62.132 61.111 28.70 0.00 42.97 2.82
84 85 3.361158 CCGCGGTTGCAATGGTGA 61.361 61.111 19.50 0.00 42.97 4.02
85 86 2.699768 CCGCGGTTGCAATGGTGAT 61.700 57.895 19.50 0.00 42.97 3.06
86 87 1.514657 CGCGGTTGCAATGGTGATG 60.515 57.895 0.59 0.00 42.97 3.07
87 88 1.153784 GCGGTTGCAATGGTGATGG 60.154 57.895 0.59 0.00 42.15 3.51
88 89 1.594194 GCGGTTGCAATGGTGATGGA 61.594 55.000 0.59 0.00 42.15 3.41
89 90 0.887247 CGGTTGCAATGGTGATGGAA 59.113 50.000 0.59 0.00 0.00 3.53
90 91 1.135315 CGGTTGCAATGGTGATGGAAG 60.135 52.381 0.59 0.00 0.00 3.46
91 92 2.170166 GGTTGCAATGGTGATGGAAGA 58.830 47.619 0.59 0.00 0.00 2.87
92 93 2.165030 GGTTGCAATGGTGATGGAAGAG 59.835 50.000 0.59 0.00 0.00 2.85
93 94 2.133281 TGCAATGGTGATGGAAGAGG 57.867 50.000 0.00 0.00 0.00 3.69
94 95 1.341285 TGCAATGGTGATGGAAGAGGG 60.341 52.381 0.00 0.00 0.00 4.30
95 96 2.025863 GCAATGGTGATGGAAGAGGGG 61.026 57.143 0.00 0.00 0.00 4.79
96 97 1.565759 CAATGGTGATGGAAGAGGGGA 59.434 52.381 0.00 0.00 0.00 4.81
97 98 1.985622 ATGGTGATGGAAGAGGGGAA 58.014 50.000 0.00 0.00 0.00 3.97
98 99 1.289160 TGGTGATGGAAGAGGGGAAG 58.711 55.000 0.00 0.00 0.00 3.46
99 100 0.548510 GGTGATGGAAGAGGGGAAGG 59.451 60.000 0.00 0.00 0.00 3.46
100 101 1.584724 GTGATGGAAGAGGGGAAGGA 58.415 55.000 0.00 0.00 0.00 3.36
101 102 1.488393 GTGATGGAAGAGGGGAAGGAG 59.512 57.143 0.00 0.00 0.00 3.69
102 103 0.472044 GATGGAAGAGGGGAAGGAGC 59.528 60.000 0.00 0.00 0.00 4.70
103 104 0.253347 ATGGAAGAGGGGAAGGAGCA 60.253 55.000 0.00 0.00 0.00 4.26
104 105 1.201429 TGGAAGAGGGGAAGGAGCAC 61.201 60.000 0.00 0.00 0.00 4.40
105 106 1.219393 GAAGAGGGGAAGGAGCACG 59.781 63.158 0.00 0.00 0.00 5.34
106 107 2.245438 GAAGAGGGGAAGGAGCACGG 62.245 65.000 0.00 0.00 0.00 4.94
107 108 4.475135 GAGGGGAAGGAGCACGGC 62.475 72.222 0.00 0.00 0.00 5.68
124 125 3.746889 CGGCGGCTTTGCATTGGA 61.747 61.111 7.61 0.00 36.28 3.53
125 126 2.125952 GGCGGCTTTGCATTGGAC 60.126 61.111 0.00 0.00 36.28 4.02
126 127 2.504681 GCGGCTTTGCATTGGACG 60.505 61.111 5.19 5.19 34.15 4.79
127 128 2.976840 GCGGCTTTGCATTGGACGA 61.977 57.895 12.39 0.00 32.69 4.20
128 129 1.135315 CGGCTTTGCATTGGACGAG 59.865 57.895 3.70 0.00 32.69 4.18
129 130 1.298157 CGGCTTTGCATTGGACGAGA 61.298 55.000 3.70 0.00 32.69 4.04
130 131 0.449388 GGCTTTGCATTGGACGAGAG 59.551 55.000 0.00 0.00 0.00 3.20
131 132 0.449388 GCTTTGCATTGGACGAGAGG 59.551 55.000 0.00 0.00 0.00 3.69
132 133 1.089920 CTTTGCATTGGACGAGAGGG 58.910 55.000 0.00 0.00 0.00 4.30
133 134 0.322456 TTTGCATTGGACGAGAGGGG 60.322 55.000 0.00 0.00 0.00 4.79
134 135 1.488705 TTGCATTGGACGAGAGGGGT 61.489 55.000 0.00 0.00 0.00 4.95
135 136 1.450312 GCATTGGACGAGAGGGGTG 60.450 63.158 0.00 0.00 0.00 4.61
136 137 1.221840 CATTGGACGAGAGGGGTGG 59.778 63.158 0.00 0.00 0.00 4.61
137 138 2.670148 ATTGGACGAGAGGGGTGGC 61.670 63.158 0.00 0.00 0.00 5.01
142 143 4.016706 CGAGAGGGGTGGCGGTTT 62.017 66.667 0.00 0.00 0.00 3.27
143 144 2.434774 GAGAGGGGTGGCGGTTTT 59.565 61.111 0.00 0.00 0.00 2.43
144 145 1.971695 GAGAGGGGTGGCGGTTTTG 60.972 63.158 0.00 0.00 0.00 2.44
145 146 3.680786 GAGGGGTGGCGGTTTTGC 61.681 66.667 0.00 0.00 0.00 3.68
146 147 4.531426 AGGGGTGGCGGTTTTGCA 62.531 61.111 0.00 0.00 36.28 4.08
147 148 3.310307 GGGGTGGCGGTTTTGCAT 61.310 61.111 0.00 0.00 36.28 3.96
148 149 2.740438 GGGTGGCGGTTTTGCATT 59.260 55.556 0.00 0.00 36.28 3.56
149 150 1.667510 GGGTGGCGGTTTTGCATTG 60.668 57.895 0.00 0.00 36.28 2.82
150 151 1.667510 GGTGGCGGTTTTGCATTGG 60.668 57.895 0.00 0.00 36.28 3.16
151 152 1.365633 GTGGCGGTTTTGCATTGGA 59.634 52.632 0.00 0.00 36.28 3.53
152 153 0.943835 GTGGCGGTTTTGCATTGGAC 60.944 55.000 0.00 0.00 36.28 4.02
153 154 1.732683 GGCGGTTTTGCATTGGACG 60.733 57.895 0.00 0.00 36.28 4.79
154 155 1.284408 GCGGTTTTGCATTGGACGA 59.716 52.632 0.00 0.00 34.15 4.20
155 156 0.729140 GCGGTTTTGCATTGGACGAG 60.729 55.000 0.00 0.00 34.15 4.18
156 157 0.871722 CGGTTTTGCATTGGACGAGA 59.128 50.000 0.00 0.00 0.00 4.04
157 158 1.135972 CGGTTTTGCATTGGACGAGAG 60.136 52.381 0.00 0.00 0.00 3.20
158 159 1.200020 GGTTTTGCATTGGACGAGAGG 59.800 52.381 0.00 0.00 0.00 3.69
159 160 1.200020 GTTTTGCATTGGACGAGAGGG 59.800 52.381 0.00 0.00 0.00 4.30
160 161 0.960364 TTTGCATTGGACGAGAGGGC 60.960 55.000 0.00 0.00 0.00 5.19
161 162 2.514824 GCATTGGACGAGAGGGCC 60.515 66.667 0.00 0.00 0.00 5.80
162 163 2.190578 CATTGGACGAGAGGGCCC 59.809 66.667 16.46 16.46 0.00 5.80
163 164 3.090532 ATTGGACGAGAGGGCCCC 61.091 66.667 21.43 10.60 0.00 5.80
164 165 3.943137 ATTGGACGAGAGGGCCCCA 62.943 63.158 21.43 3.89 0.00 4.96
168 169 4.658786 ACGAGAGGGCCCCACCTT 62.659 66.667 21.43 0.00 42.10 3.50
169 170 4.101448 CGAGAGGGCCCCACCTTG 62.101 72.222 21.43 13.61 42.10 3.61
170 171 2.936032 GAGAGGGCCCCACCTTGT 60.936 66.667 21.43 0.00 42.10 3.16
171 172 2.936032 AGAGGGCCCCACCTTGTC 60.936 66.667 21.43 7.63 42.10 3.18
172 173 3.256960 GAGGGCCCCACCTTGTCA 61.257 66.667 21.43 0.00 42.10 3.58
173 174 2.535317 AGGGCCCCACCTTGTCAT 60.535 61.111 21.43 0.00 37.69 3.06
174 175 1.230149 AGGGCCCCACCTTGTCATA 60.230 57.895 21.43 0.00 37.69 2.15
175 176 0.627469 AGGGCCCCACCTTGTCATAT 60.627 55.000 21.43 0.00 37.69 1.78
176 177 1.145571 GGGCCCCACCTTGTCATATA 58.854 55.000 12.23 0.00 39.10 0.86
177 178 1.710809 GGGCCCCACCTTGTCATATAT 59.289 52.381 12.23 0.00 39.10 0.86
178 179 2.110011 GGGCCCCACCTTGTCATATATT 59.890 50.000 12.23 0.00 39.10 1.28
179 180 3.437931 GGGCCCCACCTTGTCATATATTT 60.438 47.826 12.23 0.00 39.10 1.40
180 181 3.826729 GGCCCCACCTTGTCATATATTTC 59.173 47.826 0.00 0.00 34.51 2.17
181 182 3.826729 GCCCCACCTTGTCATATATTTCC 59.173 47.826 0.00 0.00 0.00 3.13
182 183 4.447762 GCCCCACCTTGTCATATATTTCCT 60.448 45.833 0.00 0.00 0.00 3.36
183 184 5.222048 GCCCCACCTTGTCATATATTTCCTA 60.222 44.000 0.00 0.00 0.00 2.94
184 185 6.476378 CCCCACCTTGTCATATATTTCCTAG 58.524 44.000 0.00 0.00 0.00 3.02
185 186 6.476378 CCCACCTTGTCATATATTTCCTAGG 58.524 44.000 0.82 0.82 0.00 3.02
186 187 6.272324 CCCACCTTGTCATATATTTCCTAGGA 59.728 42.308 7.62 7.62 0.00 2.94
187 188 7.162082 CCACCTTGTCATATATTTCCTAGGAC 58.838 42.308 12.22 0.00 32.12 3.85
188 189 7.016661 CCACCTTGTCATATATTTCCTAGGACT 59.983 40.741 12.22 4.50 32.58 3.85
189 190 9.090103 CACCTTGTCATATATTTCCTAGGACTA 57.910 37.037 12.22 6.85 32.58 2.59
190 191 9.670442 ACCTTGTCATATATTTCCTAGGACTAA 57.330 33.333 12.22 4.41 32.58 2.24
196 197 9.959721 TCATATATTTCCTAGGACTAAAATGCC 57.040 33.333 12.22 0.00 0.00 4.40
197 198 9.178758 CATATATTTCCTAGGACTAAAATGCCC 57.821 37.037 12.22 0.00 0.00 5.36
198 199 3.945640 TTCCTAGGACTAAAATGCCCC 57.054 47.619 12.22 0.00 0.00 5.80
199 200 3.145559 TCCTAGGACTAAAATGCCCCT 57.854 47.619 7.62 0.00 0.00 4.79
200 201 4.289837 TCCTAGGACTAAAATGCCCCTA 57.710 45.455 7.62 0.00 0.00 3.53
201 202 4.232091 TCCTAGGACTAAAATGCCCCTAG 58.768 47.826 7.62 0.00 43.67 3.02
202 203 4.078219 TCCTAGGACTAAAATGCCCCTAGA 60.078 45.833 7.62 0.42 45.73 2.43
203 204 4.040584 CCTAGGACTAAAATGCCCCTAGAC 59.959 50.000 1.05 0.00 45.73 2.59
204 205 3.737263 AGGACTAAAATGCCCCTAGACT 58.263 45.455 0.00 0.00 0.00 3.24
205 206 4.892198 AGGACTAAAATGCCCCTAGACTA 58.108 43.478 0.00 0.00 0.00 2.59
206 207 5.286221 AGGACTAAAATGCCCCTAGACTAA 58.714 41.667 0.00 0.00 0.00 2.24
207 208 5.911766 AGGACTAAAATGCCCCTAGACTAAT 59.088 40.000 0.00 0.00 0.00 1.73
208 209 7.080353 AGGACTAAAATGCCCCTAGACTAATA 58.920 38.462 0.00 0.00 0.00 0.98
209 210 7.235812 AGGACTAAAATGCCCCTAGACTAATAG 59.764 40.741 0.00 0.00 0.00 1.73
210 211 7.016366 GGACTAAAATGCCCCTAGACTAATAGT 59.984 40.741 0.00 0.00 0.00 2.12
211 212 9.086758 GACTAAAATGCCCCTAGACTAATAGTA 57.913 37.037 0.00 0.00 0.00 1.82
212 213 8.868103 ACTAAAATGCCCCTAGACTAATAGTAC 58.132 37.037 0.00 0.00 0.00 2.73
213 214 7.932683 AAAATGCCCCTAGACTAATAGTACT 57.067 36.000 0.00 0.00 0.00 2.73
214 215 7.932683 AAATGCCCCTAGACTAATAGTACTT 57.067 36.000 0.00 0.00 0.00 2.24
215 216 7.932683 AATGCCCCTAGACTAATAGTACTTT 57.067 36.000 0.00 0.00 0.00 2.66
216 217 6.973460 TGCCCCTAGACTAATAGTACTTTC 57.027 41.667 0.00 0.00 0.00 2.62
217 218 5.533903 TGCCCCTAGACTAATAGTACTTTCG 59.466 44.000 0.00 0.00 0.00 3.46
218 219 5.767168 GCCCCTAGACTAATAGTACTTTCGA 59.233 44.000 0.00 0.00 0.00 3.71
219 220 6.072563 GCCCCTAGACTAATAGTACTTTCGAG 60.073 46.154 0.00 0.00 0.00 4.04
220 221 6.997476 CCCCTAGACTAATAGTACTTTCGAGT 59.003 42.308 0.00 0.52 0.00 4.18
221 222 8.153550 CCCCTAGACTAATAGTACTTTCGAGTA 58.846 40.741 0.00 0.00 0.00 2.59
222 223 8.987890 CCCTAGACTAATAGTACTTTCGAGTAC 58.012 40.741 0.00 8.31 43.52 2.73
231 232 5.928601 GTACTTTCGAGTACTTTCATCCG 57.071 43.478 0.00 0.00 40.89 4.18
232 233 3.251571 ACTTTCGAGTACTTTCATCCGC 58.748 45.455 0.00 0.00 0.00 5.54
233 234 1.904144 TTCGAGTACTTTCATCCGCG 58.096 50.000 0.00 0.00 0.00 6.46
234 235 0.806868 TCGAGTACTTTCATCCGCGT 59.193 50.000 4.92 0.00 0.00 6.01
235 236 2.009051 TCGAGTACTTTCATCCGCGTA 58.991 47.619 4.92 0.00 0.00 4.42
236 237 2.107178 CGAGTACTTTCATCCGCGTAC 58.893 52.381 4.92 0.00 34.06 3.67
237 238 2.223203 CGAGTACTTTCATCCGCGTACT 60.223 50.000 4.92 3.12 43.62 2.73
238 239 3.730061 CGAGTACTTTCATCCGCGTACTT 60.730 47.826 4.92 0.00 41.70 2.24
239 240 4.171754 GAGTACTTTCATCCGCGTACTTT 58.828 43.478 4.92 0.00 41.70 2.66
240 241 4.171754 AGTACTTTCATCCGCGTACTTTC 58.828 43.478 4.92 0.00 39.44 2.62
241 242 1.990563 ACTTTCATCCGCGTACTTTCG 59.009 47.619 4.92 0.00 0.00 3.46
242 243 2.256174 CTTTCATCCGCGTACTTTCGA 58.744 47.619 4.92 0.00 0.00 3.71
243 244 1.904144 TTCATCCGCGTACTTTCGAG 58.096 50.000 4.92 0.00 0.00 4.04
244 245 0.806868 TCATCCGCGTACTTTCGAGT 59.193 50.000 4.92 0.00 0.00 4.18
245 246 2.009051 TCATCCGCGTACTTTCGAGTA 58.991 47.619 4.92 0.00 0.00 2.59
246 247 2.107178 CATCCGCGTACTTTCGAGTAC 58.893 52.381 4.92 6.64 40.73 2.73
247 248 1.442769 TCCGCGTACTTTCGAGTACT 58.557 50.000 4.92 0.00 41.65 2.73
248 249 2.616960 TCCGCGTACTTTCGAGTACTA 58.383 47.619 4.92 0.00 41.65 1.82
249 250 2.348666 TCCGCGTACTTTCGAGTACTAC 59.651 50.000 4.92 6.06 41.65 2.73
250 251 2.348833 CGCGTACTTTCGAGTACTACG 58.651 52.381 13.09 7.55 41.65 3.51
251 252 2.222596 CGCGTACTTTCGAGTACTACGT 60.223 50.000 12.26 0.00 41.65 3.57
252 253 3.001070 CGCGTACTTTCGAGTACTACGTA 60.001 47.826 12.26 0.00 41.65 3.57
253 254 4.317418 CGCGTACTTTCGAGTACTACGTAT 60.317 45.833 12.26 0.00 41.65 3.06
254 255 4.895116 GCGTACTTTCGAGTACTACGTATG 59.105 45.833 12.26 5.24 41.65 2.39
255 256 5.500931 GCGTACTTTCGAGTACTACGTATGT 60.501 44.000 12.26 12.66 41.65 2.29
256 257 6.291637 GCGTACTTTCGAGTACTACGTATGTA 60.292 42.308 12.26 11.95 41.65 2.29
257 258 7.567771 GCGTACTTTCGAGTACTACGTATGTAT 60.568 40.741 12.26 0.00 41.65 2.29
258 259 7.733439 CGTACTTTCGAGTACTACGTATGTATG 59.267 40.741 13.09 9.34 41.65 2.39
259 260 6.425504 ACTTTCGAGTACTACGTATGTATGC 58.574 40.000 0.00 0.00 0.00 3.14
260 261 4.635961 TCGAGTACTACGTATGTATGCG 57.364 45.455 0.00 8.83 41.71 4.73
261 262 3.120889 TCGAGTACTACGTATGTATGCGC 60.121 47.826 0.00 0.00 39.55 6.09
262 263 3.486584 GAGTACTACGTATGTATGCGCC 58.513 50.000 4.18 0.00 39.55 6.53
263 264 2.096069 AGTACTACGTATGTATGCGCCG 60.096 50.000 4.18 0.75 39.55 6.46
264 265 0.664761 ACTACGTATGTATGCGCCGT 59.335 50.000 4.18 8.00 39.55 5.68
265 266 1.066002 ACTACGTATGTATGCGCCGTT 59.934 47.619 4.18 0.00 39.55 4.44
266 267 2.290367 ACTACGTATGTATGCGCCGTTA 59.710 45.455 4.18 0.00 39.55 3.18
267 268 1.762419 ACGTATGTATGCGCCGTTAG 58.238 50.000 4.18 0.00 39.55 2.34
268 269 1.334556 ACGTATGTATGCGCCGTTAGA 59.665 47.619 4.18 0.00 39.55 2.10
269 270 2.030540 ACGTATGTATGCGCCGTTAGAT 60.031 45.455 4.18 0.88 39.55 1.98
270 271 2.592897 CGTATGTATGCGCCGTTAGATC 59.407 50.000 4.18 0.00 0.00 2.75
271 272 1.698165 ATGTATGCGCCGTTAGATCG 58.302 50.000 4.18 0.00 0.00 3.69
272 273 0.664224 TGTATGCGCCGTTAGATCGA 59.336 50.000 4.18 0.00 0.00 3.59
273 274 1.328439 GTATGCGCCGTTAGATCGAG 58.672 55.000 4.18 0.00 0.00 4.04
274 275 1.069432 GTATGCGCCGTTAGATCGAGA 60.069 52.381 4.18 0.00 0.00 4.04
275 276 0.317938 ATGCGCCGTTAGATCGAGAC 60.318 55.000 4.18 0.00 0.00 3.36
276 277 1.063649 GCGCCGTTAGATCGAGACA 59.936 57.895 0.00 0.00 0.00 3.41
277 278 0.524816 GCGCCGTTAGATCGAGACAA 60.525 55.000 0.00 0.00 0.00 3.18
278 279 1.904144 CGCCGTTAGATCGAGACAAA 58.096 50.000 0.00 0.00 0.00 2.83
279 280 1.582502 CGCCGTTAGATCGAGACAAAC 59.417 52.381 0.00 0.00 0.00 2.93
280 281 1.582502 GCCGTTAGATCGAGACAAACG 59.417 52.381 14.48 14.48 41.79 3.60
281 282 2.730090 GCCGTTAGATCGAGACAAACGA 60.730 50.000 20.02 0.00 44.11 3.85
282 283 3.495193 CCGTTAGATCGAGACAAACGAA 58.505 45.455 20.02 0.00 44.11 3.85
283 284 3.300066 CCGTTAGATCGAGACAAACGAAC 59.700 47.826 20.02 0.00 44.11 3.95
284 285 3.003312 CGTTAGATCGAGACAAACGAACG 60.003 47.826 15.72 10.76 44.11 3.95
285 286 1.978542 AGATCGAGACAAACGAACGG 58.021 50.000 0.00 0.00 42.80 4.44
286 287 0.365859 GATCGAGACAAACGAACGGC 59.634 55.000 0.00 0.00 42.80 5.68
287 288 0.038526 ATCGAGACAAACGAACGGCT 60.039 50.000 0.00 0.00 42.80 5.52
288 289 0.662374 TCGAGACAAACGAACGGCTC 60.662 55.000 0.00 0.00 36.84 4.70
289 290 1.615107 CGAGACAAACGAACGGCTCC 61.615 60.000 0.00 0.00 0.00 4.70
290 291 0.599204 GAGACAAACGAACGGCTCCA 60.599 55.000 0.00 0.00 0.00 3.86
291 292 0.179067 AGACAAACGAACGGCTCCAA 60.179 50.000 0.00 0.00 0.00 3.53
292 293 0.658897 GACAAACGAACGGCTCCAAA 59.341 50.000 0.00 0.00 0.00 3.28
293 294 1.064357 GACAAACGAACGGCTCCAAAA 59.936 47.619 0.00 0.00 0.00 2.44
294 295 1.473278 ACAAACGAACGGCTCCAAAAA 59.527 42.857 0.00 0.00 0.00 1.94
399 400 1.474017 CGATTGTCGTATCCGTGTCC 58.526 55.000 0.00 0.00 34.72 4.02
406 407 1.651240 CGTATCCGTGTCCGTGGACT 61.651 60.000 19.17 2.08 44.80 3.85
436 437 2.431419 TCCGTTTTACAGGTCAGTGTGA 59.569 45.455 0.00 0.00 31.46 3.58
503 504 1.418637 TGGGTAGGATGGGTATTTCGC 59.581 52.381 0.00 0.00 0.00 4.70
505 506 2.158726 GGGTAGGATGGGTATTTCGCAA 60.159 50.000 0.00 0.00 42.08 4.85
525 526 5.629020 CGCAACAAAATATGGGTATATGCAC 59.371 40.000 0.00 0.00 30.00 4.57
586 587 3.069729 GGGTATGCTGTTGGAGGTACTAG 59.930 52.174 0.00 0.00 41.55 2.57
587 588 3.705072 GGTATGCTGTTGGAGGTACTAGT 59.295 47.826 0.00 0.00 41.55 2.57
588 589 4.891756 GGTATGCTGTTGGAGGTACTAGTA 59.108 45.833 0.00 0.00 41.55 1.82
720 723 4.432712 AGCATCCGCAAAAATAACCAATC 58.567 39.130 0.00 0.00 42.27 2.67
741 744 2.716217 GTCTGCCTCTTATTGCCACTT 58.284 47.619 0.00 0.00 0.00 3.16
808 838 8.382875 GCATGAAATTAATTACTGCCTTCAAAC 58.617 33.333 14.19 2.83 0.00 2.93
810 840 9.860898 ATGAAATTAATTACTGCCTTCAAACTC 57.139 29.630 0.01 0.00 0.00 3.01
845 875 4.808364 ACGCAAAAAGCAGCAGAAAATTAA 59.192 33.333 0.00 0.00 46.13 1.40
848 878 7.148755 ACGCAAAAAGCAGCAGAAAATTAATAG 60.149 33.333 0.00 0.00 46.13 1.73
873 906 1.829849 AGAAACTAGTAACCGCCCTCC 59.170 52.381 0.00 0.00 0.00 4.30
908 941 5.423610 TCTTCCTCTTCCCAATCAACTCTAG 59.576 44.000 0.00 0.00 0.00 2.43
914 947 4.755266 TCCCAATCAACTCTAGGCTTAC 57.245 45.455 0.00 0.00 0.00 2.34
915 948 3.132289 TCCCAATCAACTCTAGGCTTACG 59.868 47.826 0.00 0.00 0.00 3.18
916 949 3.118738 CCCAATCAACTCTAGGCTTACGT 60.119 47.826 0.00 0.00 0.00 3.57
917 950 4.504858 CCAATCAACTCTAGGCTTACGTT 58.495 43.478 0.00 0.00 0.00 3.99
918 951 5.394883 CCCAATCAACTCTAGGCTTACGTTA 60.395 44.000 0.00 0.00 0.00 3.18
919 952 5.519206 CCAATCAACTCTAGGCTTACGTTAC 59.481 44.000 0.00 0.00 0.00 2.50
920 953 5.909621 ATCAACTCTAGGCTTACGTTACA 57.090 39.130 0.00 0.00 0.00 2.41
921 954 5.051891 TCAACTCTAGGCTTACGTTACAC 57.948 43.478 0.00 0.00 0.00 2.90
922 955 4.763793 TCAACTCTAGGCTTACGTTACACT 59.236 41.667 0.00 0.00 0.00 3.55
923 956 5.939883 TCAACTCTAGGCTTACGTTACACTA 59.060 40.000 0.00 0.00 0.00 2.74
924 957 6.430925 TCAACTCTAGGCTTACGTTACACTAA 59.569 38.462 0.00 0.00 0.00 2.24
925 958 6.188400 ACTCTAGGCTTACGTTACACTAAC 57.812 41.667 0.00 0.00 35.37 2.34
926 959 5.124617 ACTCTAGGCTTACGTTACACTAACC 59.875 44.000 0.00 0.00 35.27 2.85
927 960 3.599730 AGGCTTACGTTACACTAACCC 57.400 47.619 0.00 0.00 35.27 4.11
928 961 2.234661 AGGCTTACGTTACACTAACCCC 59.765 50.000 0.00 0.00 35.27 4.95
929 962 2.234661 GGCTTACGTTACACTAACCCCT 59.765 50.000 0.00 0.00 35.27 4.79
930 963 3.515630 GCTTACGTTACACTAACCCCTC 58.484 50.000 0.00 0.00 35.27 4.30
931 964 3.194329 GCTTACGTTACACTAACCCCTCT 59.806 47.826 0.00 0.00 35.27 3.69
932 965 4.399303 GCTTACGTTACACTAACCCCTCTA 59.601 45.833 0.00 0.00 35.27 2.43
933 966 5.068329 GCTTACGTTACACTAACCCCTCTAT 59.932 44.000 0.00 0.00 35.27 1.98
934 967 6.406288 GCTTACGTTACACTAACCCCTCTATT 60.406 42.308 0.00 0.00 35.27 1.73
935 968 7.201821 GCTTACGTTACACTAACCCCTCTATTA 60.202 40.741 0.00 0.00 35.27 0.98
936 969 8.588290 TTACGTTACACTAACCCCTCTATTAA 57.412 34.615 0.00 0.00 35.27 1.40
937 970 7.666063 ACGTTACACTAACCCCTCTATTAAT 57.334 36.000 0.00 0.00 35.27 1.40
938 971 8.766994 ACGTTACACTAACCCCTCTATTAATA 57.233 34.615 0.00 0.00 35.27 0.98
939 972 9.200817 ACGTTACACTAACCCCTCTATTAATAA 57.799 33.333 0.00 0.00 35.27 1.40
940 973 9.688592 CGTTACACTAACCCCTCTATTAATAAG 57.311 37.037 0.00 0.00 35.27 1.73
953 986 7.233757 CCTCTATTAATAAGACTACCCAGCACT 59.766 40.741 0.00 0.00 0.00 4.40
972 1005 4.692129 CGTGCTACTACGCCAGAG 57.308 61.111 0.00 0.00 37.24 3.35
982 1015 0.312102 TACGCCAGAGCATCATCGAG 59.688 55.000 0.00 0.00 39.83 4.04
983 1016 1.361632 CGCCAGAGCATCATCGAGA 59.638 57.895 0.00 0.00 39.83 4.04
984 1017 0.038435 CGCCAGAGCATCATCGAGAT 60.038 55.000 0.00 0.00 39.83 2.75
985 1018 1.712401 GCCAGAGCATCATCGAGATC 58.288 55.000 0.00 0.00 37.82 2.75
987 1020 2.353903 GCCAGAGCATCATCGAGATCAT 60.354 50.000 0.00 0.00 37.82 2.45
988 1021 3.119209 GCCAGAGCATCATCGAGATCATA 60.119 47.826 0.00 0.00 37.82 2.15
990 1023 4.097012 CAGAGCATCATCGAGATCATACG 58.903 47.826 0.00 0.00 37.82 3.06
991 1024 3.755905 AGAGCATCATCGAGATCATACGT 59.244 43.478 0.00 0.00 37.82 3.57
992 1025 3.831112 AGCATCATCGAGATCATACGTG 58.169 45.455 0.00 0.50 33.72 4.49
993 1026 3.503748 AGCATCATCGAGATCATACGTGA 59.496 43.478 0.00 5.39 39.04 4.35
994 1027 5.675827 GAGCATCATCGAGATCATACGTGAT 60.676 44.000 0.00 0.00 40.88 3.06
995 1028 5.355350 AGCATCATCGAGATCATACGTGATA 59.645 40.000 0.00 0.00 44.96 2.15
996 1029 5.453909 GCATCATCGAGATCATACGTGATAC 59.546 44.000 0.00 11.35 44.96 2.24
997 1030 5.204673 TCATCGAGATCATACGTGATACG 57.795 43.478 0.00 3.79 44.96 3.06
998 1031 5.728067 ATCATCGAGATCATACGTGATACGC 60.728 44.000 0.00 0.00 44.96 4.42
999 1032 8.581834 ATCATCGAGATCATACGTGATACGCC 62.582 46.154 0.00 0.00 44.96 5.68
1035 1068 0.109226 GCTACGCTCTCCTTGTCGTT 60.109 55.000 0.00 0.00 36.50 3.85
1037 1070 0.388134 TACGCTCTCCTTGTCGTTGC 60.388 55.000 0.00 0.00 36.50 4.17
1039 1072 1.301716 GCTCTCCTTGTCGTTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
1041 1074 1.813513 CTCTCCTTGTCGTTGCCATT 58.186 50.000 0.00 0.00 0.00 3.16
1393 1456 4.450122 GTACCGCAGCGACGACGA 62.450 66.667 18.75 0.00 42.66 4.20
1604 1706 3.775202 AGAGTTTGATCTTCGACGATGG 58.225 45.455 9.41 1.95 0.00 3.51
1822 2319 2.280823 CTACGTCAACGCCTCCTCCC 62.281 65.000 1.81 0.00 44.43 4.30
2029 2547 0.539986 GGTTCTGCTGGACCCGATAA 59.460 55.000 9.95 0.00 0.00 1.75
2052 2570 1.815421 GGAGATGACACGGCGCATT 60.815 57.895 10.83 0.00 0.00 3.56
2059 2577 2.096406 CACGGCGCATTCACTTCG 59.904 61.111 10.83 2.82 0.00 3.79
2060 2578 2.357034 ACGGCGCATTCACTTCGT 60.357 55.556 10.83 3.59 0.00 3.85
2107 2637 2.125753 AGCTCTGCTACAGCGTGC 60.126 61.111 10.14 10.14 45.83 5.34
2152 2688 2.322658 TCTACAAGTTTGTCCCGGACT 58.677 47.619 18.54 0.00 42.35 3.85
2206 2742 2.815647 CGCTGAAGCCGGAGAACC 60.816 66.667 5.05 0.00 37.91 3.62
2435 2984 9.632807 TCATTAGTTGCTAATAATTTTGCGTTT 57.367 25.926 0.00 0.00 34.83 3.60
2461 3010 1.273048 TGCCATGTGGTGCATCTTTTC 59.727 47.619 0.00 0.00 35.19 2.29
2462 3011 1.547372 GCCATGTGGTGCATCTTTTCT 59.453 47.619 0.00 0.00 35.19 2.52
2463 3012 2.028748 GCCATGTGGTGCATCTTTTCTT 60.029 45.455 0.00 0.00 35.19 2.52
2464 3013 3.555586 GCCATGTGGTGCATCTTTTCTTT 60.556 43.478 0.00 0.00 35.19 2.52
2465 3014 4.634199 CCATGTGGTGCATCTTTTCTTTT 58.366 39.130 0.00 0.00 35.19 2.27
2476 3025 5.220098 GCATCTTTTCTTTTATGCGTTGCTC 60.220 40.000 0.00 0.00 35.81 4.26
2478 3027 6.072112 TCTTTTCTTTTATGCGTTGCTCTT 57.928 33.333 0.00 0.00 0.00 2.85
2480 3029 6.417635 TCTTTTCTTTTATGCGTTGCTCTTTG 59.582 34.615 0.00 0.00 0.00 2.77
2483 3032 4.274705 TCTTTTATGCGTTGCTCTTTGTCA 59.725 37.500 0.00 0.00 0.00 3.58
2487 3036 1.330521 TGCGTTGCTCTTTGTCAGTTC 59.669 47.619 0.00 0.00 0.00 3.01
2509 3058 2.854963 GCTCCTGAATGCCACATATGA 58.145 47.619 10.38 0.00 0.00 2.15
2511 3060 2.812591 CTCCTGAATGCCACATATGAGC 59.187 50.000 10.38 12.23 0.00 4.26
2521 3070 3.683847 GCCACATATGAGCTCTCTTTGGT 60.684 47.826 16.19 3.04 0.00 3.67
2523 3072 4.334759 CCACATATGAGCTCTCTTTGGTTG 59.665 45.833 16.19 4.20 0.00 3.77
2542 3091 4.452795 GGTTGGTCTTTCAGAGTAGCTTTC 59.547 45.833 0.00 0.00 0.00 2.62
2587 3137 8.943909 AGAGTATCGATTAAGTAAAACCTTGG 57.056 34.615 1.71 0.00 42.67 3.61
2588 3138 7.494952 AGAGTATCGATTAAGTAAAACCTTGGC 59.505 37.037 1.71 0.00 42.67 4.52
2589 3139 4.932268 TCGATTAAGTAAAACCTTGGCG 57.068 40.909 0.00 0.00 0.00 5.69
2590 3140 4.317488 TCGATTAAGTAAAACCTTGGCGT 58.683 39.130 0.00 0.00 0.00 5.68
2591 3141 4.152759 TCGATTAAGTAAAACCTTGGCGTG 59.847 41.667 0.00 0.00 0.00 5.34
2592 3142 3.629438 TTAAGTAAAACCTTGGCGTGC 57.371 42.857 0.00 0.00 0.00 5.34
2593 3143 0.671796 AAGTAAAACCTTGGCGTGCC 59.328 50.000 3.30 3.30 0.00 5.01
2594 3144 0.466555 AGTAAAACCTTGGCGTGCCA 60.467 50.000 10.06 10.06 45.63 4.92
2603 3153 3.642938 TGGCGTGCCAAACTTATCT 57.357 47.368 11.96 0.00 44.12 1.98
2604 3154 1.904287 TGGCGTGCCAAACTTATCTT 58.096 45.000 11.96 0.00 44.12 2.40
2605 3155 3.060736 TGGCGTGCCAAACTTATCTTA 57.939 42.857 11.96 0.00 44.12 2.10
2606 3156 3.413327 TGGCGTGCCAAACTTATCTTAA 58.587 40.909 11.96 0.00 44.12 1.85
2607 3157 3.189702 TGGCGTGCCAAACTTATCTTAAC 59.810 43.478 11.96 0.00 44.12 2.01
2608 3158 3.427098 GGCGTGCCAAACTTATCTTAACC 60.427 47.826 5.89 0.00 35.81 2.85
2609 3159 3.726782 GCGTGCCAAACTTATCTTAACCG 60.727 47.826 0.00 0.00 0.00 4.44
2610 3160 3.726782 CGTGCCAAACTTATCTTAACCGC 60.727 47.826 0.00 0.00 0.00 5.68
2686 3237 1.981256 TTGGAGGACTTTGCTTGGAC 58.019 50.000 0.00 0.00 0.00 4.02
2705 3256 1.376609 CCTATTCCTTGCCGTGGTGC 61.377 60.000 0.00 0.00 0.00 5.01
2745 3296 0.974383 CTACAAGTTCCCGGTGTCCT 59.026 55.000 0.00 0.00 0.00 3.85
2954 3505 1.202568 CCAGCGCAATGATCTAGTGGA 60.203 52.381 11.47 0.00 0.00 4.02
3350 4133 5.768317 AGTGGATGTTTTAACAAACGATGG 58.232 37.500 0.00 0.00 44.76 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.839994 TCTCATCTTCCACATCCACCC 59.160 52.381 0.00 0.00 0.00 4.61
1 2 3.198635 TCTTCTCATCTTCCACATCCACC 59.801 47.826 0.00 0.00 0.00 4.61
2 3 4.440880 CTCTTCTCATCTTCCACATCCAC 58.559 47.826 0.00 0.00 0.00 4.02
3 4 3.118482 GCTCTTCTCATCTTCCACATCCA 60.118 47.826 0.00 0.00 0.00 3.41
4 5 3.118482 TGCTCTTCTCATCTTCCACATCC 60.118 47.826 0.00 0.00 0.00 3.51
5 6 4.134379 TGCTCTTCTCATCTTCCACATC 57.866 45.455 0.00 0.00 0.00 3.06
6 7 4.564782 TTGCTCTTCTCATCTTCCACAT 57.435 40.909 0.00 0.00 0.00 3.21
7 8 4.202398 ACTTTGCTCTTCTCATCTTCCACA 60.202 41.667 0.00 0.00 0.00 4.17
8 9 4.322567 ACTTTGCTCTTCTCATCTTCCAC 58.677 43.478 0.00 0.00 0.00 4.02
9 10 4.630644 ACTTTGCTCTTCTCATCTTCCA 57.369 40.909 0.00 0.00 0.00 3.53
10 11 5.294050 CAACTTTGCTCTTCTCATCTTCC 57.706 43.478 0.00 0.00 0.00 3.46
25 26 4.741781 CTCGCGGCCGCAACTTTG 62.742 66.667 45.26 29.68 42.06 2.77
26 27 4.980805 TCTCGCGGCCGCAACTTT 62.981 61.111 45.26 0.00 42.06 2.66
27 28 4.980805 TTCTCGCGGCCGCAACTT 62.981 61.111 45.26 0.00 42.06 2.66
34 35 4.214327 CTCCTCCTTCTCGCGGCC 62.214 72.222 6.13 0.00 0.00 6.13
35 36 2.621371 CTTCTCCTCCTTCTCGCGGC 62.621 65.000 6.13 0.00 0.00 6.53
36 37 1.435515 CTTCTCCTCCTTCTCGCGG 59.564 63.158 6.13 0.00 0.00 6.46
37 38 1.435515 CCTTCTCCTCCTTCTCGCG 59.564 63.158 0.00 0.00 0.00 5.87
38 39 1.142965 GCCTTCTCCTCCTTCTCGC 59.857 63.158 0.00 0.00 0.00 5.03
39 40 1.953686 CTAGCCTTCTCCTCCTTCTCG 59.046 57.143 0.00 0.00 0.00 4.04
40 41 2.091555 TCCTAGCCTTCTCCTCCTTCTC 60.092 54.545 0.00 0.00 0.00 2.87
41 42 1.933765 TCCTAGCCTTCTCCTCCTTCT 59.066 52.381 0.00 0.00 0.00 2.85
42 43 2.091555 TCTCCTAGCCTTCTCCTCCTTC 60.092 54.545 0.00 0.00 0.00 3.46
43 44 1.933765 TCTCCTAGCCTTCTCCTCCTT 59.066 52.381 0.00 0.00 0.00 3.36
44 45 1.614449 TCTCCTAGCCTTCTCCTCCT 58.386 55.000 0.00 0.00 0.00 3.69
45 46 2.247358 CATCTCCTAGCCTTCTCCTCC 58.753 57.143 0.00 0.00 0.00 4.30
46 47 2.247358 CCATCTCCTAGCCTTCTCCTC 58.753 57.143 0.00 0.00 0.00 3.71
47 48 1.761009 GCCATCTCCTAGCCTTCTCCT 60.761 57.143 0.00 0.00 0.00 3.69
48 49 0.684535 GCCATCTCCTAGCCTTCTCC 59.315 60.000 0.00 0.00 0.00 3.71
49 50 0.684535 GGCCATCTCCTAGCCTTCTC 59.315 60.000 0.00 0.00 43.62 2.87
50 51 1.118356 CGGCCATCTCCTAGCCTTCT 61.118 60.000 2.24 0.00 44.84 2.85
51 52 1.369321 CGGCCATCTCCTAGCCTTC 59.631 63.158 2.24 0.00 44.84 3.46
52 53 2.812619 GCGGCCATCTCCTAGCCTT 61.813 63.158 2.24 0.00 44.84 4.35
53 54 3.237741 GCGGCCATCTCCTAGCCT 61.238 66.667 2.24 0.00 44.84 4.58
54 55 4.671569 CGCGGCCATCTCCTAGCC 62.672 72.222 2.24 0.00 43.53 3.93
55 56 4.671569 CCGCGGCCATCTCCTAGC 62.672 72.222 14.67 0.00 0.00 3.42
56 57 2.797278 AACCGCGGCCATCTCCTAG 61.797 63.158 28.58 0.00 0.00 3.02
57 58 2.762459 AACCGCGGCCATCTCCTA 60.762 61.111 28.58 0.00 0.00 2.94
58 59 4.473520 CAACCGCGGCCATCTCCT 62.474 66.667 28.58 0.00 0.00 3.69
62 63 3.825611 ATTGCAACCGCGGCCATC 61.826 61.111 28.58 12.81 42.97 3.51
63 64 4.132441 CATTGCAACCGCGGCCAT 62.132 61.111 28.58 9.34 42.97 4.40
67 68 2.699768 ATCACCATTGCAACCGCGG 61.700 57.895 26.86 26.86 42.97 6.46
68 69 1.514657 CATCACCATTGCAACCGCG 60.515 57.895 0.00 0.00 42.97 6.46
69 70 1.153784 CCATCACCATTGCAACCGC 60.154 57.895 0.00 0.00 39.24 5.68
70 71 0.887247 TTCCATCACCATTGCAACCG 59.113 50.000 0.00 0.00 0.00 4.44
71 72 2.165030 CTCTTCCATCACCATTGCAACC 59.835 50.000 0.00 0.00 0.00 3.77
72 73 2.165030 CCTCTTCCATCACCATTGCAAC 59.835 50.000 0.00 0.00 0.00 4.17
73 74 2.449464 CCTCTTCCATCACCATTGCAA 58.551 47.619 0.00 0.00 0.00 4.08
74 75 1.341285 CCCTCTTCCATCACCATTGCA 60.341 52.381 0.00 0.00 0.00 4.08
75 76 1.396653 CCCTCTTCCATCACCATTGC 58.603 55.000 0.00 0.00 0.00 3.56
76 77 1.565759 TCCCCTCTTCCATCACCATTG 59.434 52.381 0.00 0.00 0.00 2.82
77 78 1.985622 TCCCCTCTTCCATCACCATT 58.014 50.000 0.00 0.00 0.00 3.16
78 79 1.849039 CTTCCCCTCTTCCATCACCAT 59.151 52.381 0.00 0.00 0.00 3.55
79 80 1.289160 CTTCCCCTCTTCCATCACCA 58.711 55.000 0.00 0.00 0.00 4.17
80 81 0.548510 CCTTCCCCTCTTCCATCACC 59.451 60.000 0.00 0.00 0.00 4.02
81 82 1.488393 CTCCTTCCCCTCTTCCATCAC 59.512 57.143 0.00 0.00 0.00 3.06
82 83 1.885049 CTCCTTCCCCTCTTCCATCA 58.115 55.000 0.00 0.00 0.00 3.07
83 84 0.472044 GCTCCTTCCCCTCTTCCATC 59.528 60.000 0.00 0.00 0.00 3.51
84 85 0.253347 TGCTCCTTCCCCTCTTCCAT 60.253 55.000 0.00 0.00 0.00 3.41
85 86 1.160870 TGCTCCTTCCCCTCTTCCA 59.839 57.895 0.00 0.00 0.00 3.53
86 87 1.604915 GTGCTCCTTCCCCTCTTCC 59.395 63.158 0.00 0.00 0.00 3.46
87 88 1.219393 CGTGCTCCTTCCCCTCTTC 59.781 63.158 0.00 0.00 0.00 2.87
88 89 2.294078 CCGTGCTCCTTCCCCTCTT 61.294 63.158 0.00 0.00 0.00 2.85
89 90 2.685380 CCGTGCTCCTTCCCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
90 91 4.475135 GCCGTGCTCCTTCCCCTC 62.475 72.222 0.00 0.00 0.00 4.30
107 108 3.746889 TCCAATGCAAAGCCGCCG 61.747 61.111 0.00 0.00 0.00 6.46
108 109 2.125952 GTCCAATGCAAAGCCGCC 60.126 61.111 0.00 0.00 0.00 6.13
109 110 2.504681 CGTCCAATGCAAAGCCGC 60.505 61.111 0.00 0.00 0.00 6.53
110 111 1.135315 CTCGTCCAATGCAAAGCCG 59.865 57.895 0.00 0.00 0.00 5.52
111 112 0.449388 CTCTCGTCCAATGCAAAGCC 59.551 55.000 0.00 0.00 0.00 4.35
112 113 0.449388 CCTCTCGTCCAATGCAAAGC 59.551 55.000 0.00 0.00 0.00 3.51
113 114 1.089920 CCCTCTCGTCCAATGCAAAG 58.910 55.000 0.00 0.00 0.00 2.77
114 115 0.322456 CCCCTCTCGTCCAATGCAAA 60.322 55.000 0.00 0.00 0.00 3.68
115 116 1.299648 CCCCTCTCGTCCAATGCAA 59.700 57.895 0.00 0.00 0.00 4.08
116 117 1.918293 ACCCCTCTCGTCCAATGCA 60.918 57.895 0.00 0.00 0.00 3.96
117 118 1.450312 CACCCCTCTCGTCCAATGC 60.450 63.158 0.00 0.00 0.00 3.56
118 119 1.221840 CCACCCCTCTCGTCCAATG 59.778 63.158 0.00 0.00 0.00 2.82
119 120 2.670148 GCCACCCCTCTCGTCCAAT 61.670 63.158 0.00 0.00 0.00 3.16
120 121 3.319198 GCCACCCCTCTCGTCCAA 61.319 66.667 0.00 0.00 0.00 3.53
125 126 3.546714 AAAACCGCCACCCCTCTCG 62.547 63.158 0.00 0.00 0.00 4.04
126 127 1.971695 CAAAACCGCCACCCCTCTC 60.972 63.158 0.00 0.00 0.00 3.20
127 128 2.115266 CAAAACCGCCACCCCTCT 59.885 61.111 0.00 0.00 0.00 3.69
128 129 3.680786 GCAAAACCGCCACCCCTC 61.681 66.667 0.00 0.00 0.00 4.30
129 130 3.826265 ATGCAAAACCGCCACCCCT 62.826 57.895 0.00 0.00 0.00 4.79
130 131 2.878089 AATGCAAAACCGCCACCCC 61.878 57.895 0.00 0.00 0.00 4.95
131 132 1.667510 CAATGCAAAACCGCCACCC 60.668 57.895 0.00 0.00 0.00 4.61
132 133 1.667510 CCAATGCAAAACCGCCACC 60.668 57.895 0.00 0.00 0.00 4.61
133 134 0.943835 GTCCAATGCAAAACCGCCAC 60.944 55.000 0.00 0.00 0.00 5.01
134 135 1.365633 GTCCAATGCAAAACCGCCA 59.634 52.632 0.00 0.00 0.00 5.69
135 136 1.732683 CGTCCAATGCAAAACCGCC 60.733 57.895 0.00 0.00 0.00 6.13
136 137 0.729140 CTCGTCCAATGCAAAACCGC 60.729 55.000 0.00 0.00 0.00 5.68
137 138 0.871722 TCTCGTCCAATGCAAAACCG 59.128 50.000 0.00 0.00 0.00 4.44
138 139 1.200020 CCTCTCGTCCAATGCAAAACC 59.800 52.381 0.00 0.00 0.00 3.27
139 140 1.200020 CCCTCTCGTCCAATGCAAAAC 59.800 52.381 0.00 0.00 0.00 2.43
140 141 1.533625 CCCTCTCGTCCAATGCAAAA 58.466 50.000 0.00 0.00 0.00 2.44
141 142 0.960364 GCCCTCTCGTCCAATGCAAA 60.960 55.000 0.00 0.00 0.00 3.68
142 143 1.377202 GCCCTCTCGTCCAATGCAA 60.377 57.895 0.00 0.00 0.00 4.08
143 144 2.268920 GCCCTCTCGTCCAATGCA 59.731 61.111 0.00 0.00 0.00 3.96
144 145 2.514824 GGCCCTCTCGTCCAATGC 60.515 66.667 0.00 0.00 0.00 3.56
145 146 2.190578 GGGCCCTCTCGTCCAATG 59.809 66.667 17.04 0.00 0.00 2.82
146 147 3.090532 GGGGCCCTCTCGTCCAAT 61.091 66.667 24.38 0.00 0.00 3.16
147 148 4.649705 TGGGGCCCTCTCGTCCAA 62.650 66.667 25.93 0.00 0.00 3.53
151 152 4.658786 AAGGTGGGGCCCTCTCGT 62.659 66.667 25.93 12.72 38.26 4.18
152 153 4.101448 CAAGGTGGGGCCCTCTCG 62.101 72.222 25.93 7.10 38.26 4.04
153 154 2.936032 ACAAGGTGGGGCCCTCTC 60.936 66.667 25.93 14.02 38.26 3.20
154 155 2.936032 GACAAGGTGGGGCCCTCT 60.936 66.667 25.93 18.23 38.26 3.69
155 156 1.279025 TATGACAAGGTGGGGCCCTC 61.279 60.000 25.93 21.03 38.26 4.30
156 157 0.627469 ATATGACAAGGTGGGGCCCT 60.627 55.000 25.93 0.46 38.26 5.19
157 158 1.145571 TATATGACAAGGTGGGGCCC 58.854 55.000 18.17 18.17 38.26 5.80
158 159 3.525800 AATATATGACAAGGTGGGGCC 57.474 47.619 0.00 0.00 37.58 5.80
159 160 3.826729 GGAAATATATGACAAGGTGGGGC 59.173 47.826 0.00 0.00 0.00 5.80
160 161 5.324832 AGGAAATATATGACAAGGTGGGG 57.675 43.478 0.00 0.00 0.00 4.96
161 162 6.272324 TCCTAGGAAATATATGACAAGGTGGG 59.728 42.308 9.71 0.00 0.00 4.61
162 163 7.016661 AGTCCTAGGAAATATATGACAAGGTGG 59.983 40.741 14.65 0.00 0.00 4.61
163 164 7.967908 AGTCCTAGGAAATATATGACAAGGTG 58.032 38.462 14.65 0.00 0.00 4.00
164 165 9.670442 TTAGTCCTAGGAAATATATGACAAGGT 57.330 33.333 14.65 0.00 0.00 3.50
170 171 9.959721 GGCATTTTAGTCCTAGGAAATATATGA 57.040 33.333 14.65 0.00 0.00 2.15
171 172 9.178758 GGGCATTTTAGTCCTAGGAAATATATG 57.821 37.037 14.65 15.01 0.00 1.78
172 173 8.336987 GGGGCATTTTAGTCCTAGGAAATATAT 58.663 37.037 14.65 2.08 32.56 0.86
173 174 7.519706 AGGGGCATTTTAGTCCTAGGAAATATA 59.480 37.037 14.65 2.29 32.56 0.86
174 175 6.335580 AGGGGCATTTTAGTCCTAGGAAATAT 59.664 38.462 14.65 3.21 32.56 1.28
175 176 5.674958 AGGGGCATTTTAGTCCTAGGAAATA 59.325 40.000 14.65 6.97 32.56 1.40
176 177 4.482398 AGGGGCATTTTAGTCCTAGGAAAT 59.518 41.667 14.65 6.83 32.56 2.17
177 178 3.856206 AGGGGCATTTTAGTCCTAGGAAA 59.144 43.478 14.65 4.34 32.56 3.13
178 179 3.470868 AGGGGCATTTTAGTCCTAGGAA 58.529 45.455 14.65 0.00 32.56 3.36
179 180 3.145559 AGGGGCATTTTAGTCCTAGGA 57.854 47.619 7.62 7.62 32.56 2.94
180 181 4.040584 GTCTAGGGGCATTTTAGTCCTAGG 59.959 50.000 0.82 0.82 44.26 3.02
181 182 4.902448 AGTCTAGGGGCATTTTAGTCCTAG 59.098 45.833 8.06 8.06 45.03 3.02
182 183 4.892198 AGTCTAGGGGCATTTTAGTCCTA 58.108 43.478 0.00 0.00 32.56 2.94
183 184 3.737263 AGTCTAGGGGCATTTTAGTCCT 58.263 45.455 0.00 0.00 32.56 3.85
184 185 5.625568 TTAGTCTAGGGGCATTTTAGTCC 57.374 43.478 0.00 0.00 0.00 3.85
185 186 7.964624 ACTATTAGTCTAGGGGCATTTTAGTC 58.035 38.462 0.00 0.00 0.00 2.59
186 187 7.932683 ACTATTAGTCTAGGGGCATTTTAGT 57.067 36.000 0.00 0.00 0.00 2.24
187 188 9.091220 AGTACTATTAGTCTAGGGGCATTTTAG 57.909 37.037 0.00 0.00 0.00 1.85
188 189 9.443365 AAGTACTATTAGTCTAGGGGCATTTTA 57.557 33.333 0.00 0.00 0.00 1.52
189 190 7.932683 AGTACTATTAGTCTAGGGGCATTTT 57.067 36.000 0.00 0.00 0.00 1.82
190 191 7.932683 AAGTACTATTAGTCTAGGGGCATTT 57.067 36.000 0.00 0.00 0.00 2.32
191 192 7.255871 CGAAAGTACTATTAGTCTAGGGGCATT 60.256 40.741 0.00 0.00 0.00 3.56
192 193 6.208994 CGAAAGTACTATTAGTCTAGGGGCAT 59.791 42.308 0.00 0.00 0.00 4.40
193 194 5.533903 CGAAAGTACTATTAGTCTAGGGGCA 59.466 44.000 0.00 0.00 0.00 5.36
194 195 5.767168 TCGAAAGTACTATTAGTCTAGGGGC 59.233 44.000 0.00 0.00 0.00 5.80
195 196 6.997476 ACTCGAAAGTACTATTAGTCTAGGGG 59.003 42.308 0.00 0.00 32.59 4.79
210 211 4.418392 GCGGATGAAAGTACTCGAAAGTA 58.582 43.478 0.00 0.00 36.92 2.24
211 212 3.251571 GCGGATGAAAGTACTCGAAAGT 58.748 45.455 0.00 0.00 39.66 2.66
212 213 2.279136 CGCGGATGAAAGTACTCGAAAG 59.721 50.000 0.00 0.00 0.00 2.62
213 214 2.256174 CGCGGATGAAAGTACTCGAAA 58.744 47.619 0.00 0.00 0.00 3.46
214 215 1.200716 ACGCGGATGAAAGTACTCGAA 59.799 47.619 12.47 0.00 0.00 3.71
215 216 0.806868 ACGCGGATGAAAGTACTCGA 59.193 50.000 12.47 0.00 0.00 4.04
216 217 2.107178 GTACGCGGATGAAAGTACTCG 58.893 52.381 12.47 0.00 37.18 4.18
217 218 3.417690 AGTACGCGGATGAAAGTACTC 57.582 47.619 12.47 0.00 44.27 2.59
219 220 3.001365 CGAAAGTACGCGGATGAAAGTAC 60.001 47.826 12.47 0.49 39.58 2.73
220 221 3.119884 TCGAAAGTACGCGGATGAAAGTA 60.120 43.478 12.47 0.00 0.00 2.24
221 222 1.990563 CGAAAGTACGCGGATGAAAGT 59.009 47.619 12.47 0.00 0.00 2.66
222 223 2.256174 TCGAAAGTACGCGGATGAAAG 58.744 47.619 12.47 0.00 0.00 2.62
223 224 2.256174 CTCGAAAGTACGCGGATGAAA 58.744 47.619 12.47 0.00 0.00 2.69
224 225 1.200716 ACTCGAAAGTACGCGGATGAA 59.799 47.619 12.47 0.00 32.59 2.57
225 226 0.806868 ACTCGAAAGTACGCGGATGA 59.193 50.000 12.47 0.00 32.59 2.92
226 227 2.107178 GTACTCGAAAGTACGCGGATG 58.893 52.381 12.47 0.00 46.17 3.51
227 228 2.465210 GTACTCGAAAGTACGCGGAT 57.535 50.000 12.47 0.00 46.17 4.18
228 229 3.975992 GTACTCGAAAGTACGCGGA 57.024 52.632 12.47 0.00 46.17 5.54
246 247 1.762419 AACGGCGCATACATACGTAG 58.238 50.000 10.83 0.00 36.69 3.51
247 248 2.547634 TCTAACGGCGCATACATACGTA 59.452 45.455 10.83 0.00 36.69 3.57
248 249 1.334556 TCTAACGGCGCATACATACGT 59.665 47.619 10.83 4.47 39.74 3.57
249 250 2.040714 TCTAACGGCGCATACATACG 57.959 50.000 10.83 3.69 0.00 3.06
250 251 2.592897 CGATCTAACGGCGCATACATAC 59.407 50.000 10.83 0.00 0.00 2.39
251 252 2.485038 TCGATCTAACGGCGCATACATA 59.515 45.455 10.83 0.00 0.00 2.29
252 253 1.268625 TCGATCTAACGGCGCATACAT 59.731 47.619 10.83 0.00 0.00 2.29
253 254 0.664224 TCGATCTAACGGCGCATACA 59.336 50.000 10.83 0.00 0.00 2.29
254 255 1.069432 TCTCGATCTAACGGCGCATAC 60.069 52.381 10.83 0.00 0.00 2.39
255 256 1.069432 GTCTCGATCTAACGGCGCATA 60.069 52.381 10.83 0.00 0.00 3.14
256 257 0.317938 GTCTCGATCTAACGGCGCAT 60.318 55.000 10.83 0.00 0.00 4.73
257 258 1.063649 GTCTCGATCTAACGGCGCA 59.936 57.895 10.83 0.00 0.00 6.09
258 259 0.524816 TTGTCTCGATCTAACGGCGC 60.525 55.000 6.90 0.00 0.00 6.53
259 260 1.582502 GTTTGTCTCGATCTAACGGCG 59.417 52.381 4.80 4.80 0.00 6.46
260 261 1.582502 CGTTTGTCTCGATCTAACGGC 59.417 52.381 20.15 0.00 39.12 5.68
261 262 3.127081 TCGTTTGTCTCGATCTAACGG 57.873 47.619 23.96 13.57 41.45 4.44
262 263 3.003312 CGTTCGTTTGTCTCGATCTAACG 60.003 47.826 21.09 21.09 42.05 3.18
263 264 3.300066 CCGTTCGTTTGTCTCGATCTAAC 59.700 47.826 0.00 0.00 37.18 2.34
264 265 3.495193 CCGTTCGTTTGTCTCGATCTAA 58.505 45.455 0.00 0.00 37.18 2.10
265 266 2.730090 GCCGTTCGTTTGTCTCGATCTA 60.730 50.000 0.00 0.00 37.18 1.98
266 267 1.978542 CCGTTCGTTTGTCTCGATCT 58.021 50.000 0.00 0.00 37.18 2.75
267 268 0.365859 GCCGTTCGTTTGTCTCGATC 59.634 55.000 0.00 0.00 37.18 3.69
268 269 0.038526 AGCCGTTCGTTTGTCTCGAT 60.039 50.000 0.00 0.00 37.18 3.59
269 270 0.662374 GAGCCGTTCGTTTGTCTCGA 60.662 55.000 0.00 0.00 35.50 4.04
270 271 1.615107 GGAGCCGTTCGTTTGTCTCG 61.615 60.000 0.00 0.00 0.00 4.04
271 272 0.599204 TGGAGCCGTTCGTTTGTCTC 60.599 55.000 0.00 0.00 0.00 3.36
272 273 0.179067 TTGGAGCCGTTCGTTTGTCT 60.179 50.000 0.00 0.00 0.00 3.41
273 274 0.658897 TTTGGAGCCGTTCGTTTGTC 59.341 50.000 0.00 0.00 0.00 3.18
274 275 1.096416 TTTTGGAGCCGTTCGTTTGT 58.904 45.000 0.00 0.00 0.00 2.83
275 276 2.196295 TTTTTGGAGCCGTTCGTTTG 57.804 45.000 0.00 0.00 0.00 2.93
291 292 8.419076 CAACTTTTACAGTAGTTGGCATTTTT 57.581 30.769 6.76 0.00 44.65 1.94
355 356 6.216868 GGCTATCCAACCTTATCCCCTAAATA 59.783 42.308 0.00 0.00 0.00 1.40
369 370 1.217882 CGACAATCGGCTATCCAACC 58.782 55.000 0.00 0.00 36.00 3.77
399 400 4.027755 GACACACACCAGTCCACG 57.972 61.111 0.00 0.00 0.00 4.94
406 407 2.281517 CTGTAAAACGGACACACACCA 58.718 47.619 0.00 0.00 0.00 4.17
436 437 4.706962 GTCCAAGTGAAAATAGGGCATCTT 59.293 41.667 0.00 0.00 0.00 2.40
473 474 3.440127 CCATCCTACCCAAAATTGTGGT 58.560 45.455 13.82 6.48 36.90 4.16
503 504 8.816144 GTTTGTGCATATACCCATATTTTGTTG 58.184 33.333 0.00 0.00 0.00 3.33
505 506 7.199766 CGTTTGTGCATATACCCATATTTTGT 58.800 34.615 0.00 0.00 0.00 2.83
636 637 1.215117 CCAACGGCGCAAATCCATT 59.785 52.632 10.83 0.00 0.00 3.16
637 638 1.656818 CTCCAACGGCGCAAATCCAT 61.657 55.000 10.83 0.00 0.00 3.41
720 723 1.009829 GTGGCAATAAGAGGCAGACG 58.990 55.000 0.00 0.00 42.55 4.18
785 815 9.077885 AGAGTTTGAAGGCAGTAATTAATTTCA 57.922 29.630 5.91 0.00 0.00 2.69
808 838 5.499176 GCTTTTTGCGTTTGAAACTGAAGAG 60.499 40.000 6.49 4.38 0.00 2.85
810 840 4.091220 TGCTTTTTGCGTTTGAAACTGAAG 59.909 37.500 6.49 4.49 46.63 3.02
845 875 6.488344 GGGCGGTTACTAGTTTCTACTACTAT 59.512 42.308 0.00 0.00 35.78 2.12
848 878 4.642437 AGGGCGGTTACTAGTTTCTACTAC 59.358 45.833 0.00 0.00 35.78 2.73
873 906 3.387699 GGAAGAGGAAGATGAAGAGGAGG 59.612 52.174 0.00 0.00 0.00 4.30
908 941 2.234661 AGGGGTTAGTGTAACGTAAGCC 59.765 50.000 6.23 6.23 45.86 4.35
914 947 9.688592 CTTATTAATAGAGGGGTTAGTGTAACG 57.311 37.037 0.00 0.00 45.86 3.18
920 953 9.599056 GGTAGTCTTATTAATAGAGGGGTTAGT 57.401 37.037 0.00 0.00 0.00 2.24
921 954 9.033711 GGGTAGTCTTATTAATAGAGGGGTTAG 57.966 40.741 0.00 0.00 0.00 2.34
922 955 8.522155 TGGGTAGTCTTATTAATAGAGGGGTTA 58.478 37.037 0.00 0.00 0.00 2.85
923 956 7.375890 TGGGTAGTCTTATTAATAGAGGGGTT 58.624 38.462 0.00 0.00 0.00 4.11
924 957 6.941915 TGGGTAGTCTTATTAATAGAGGGGT 58.058 40.000 0.00 0.00 0.00 4.95
925 958 6.070710 GCTGGGTAGTCTTATTAATAGAGGGG 60.071 46.154 0.00 0.00 0.00 4.79
926 959 6.497259 TGCTGGGTAGTCTTATTAATAGAGGG 59.503 42.308 0.00 0.00 0.00 4.30
927 960 7.233757 AGTGCTGGGTAGTCTTATTAATAGAGG 59.766 40.741 0.00 0.00 0.00 3.69
928 961 8.085296 CAGTGCTGGGTAGTCTTATTAATAGAG 58.915 40.741 0.00 0.00 0.00 2.43
929 962 7.471539 GCAGTGCTGGGTAGTCTTATTAATAGA 60.472 40.741 8.18 0.00 0.00 1.98
930 963 6.647067 GCAGTGCTGGGTAGTCTTATTAATAG 59.353 42.308 8.18 0.00 0.00 1.73
931 964 6.522054 GCAGTGCTGGGTAGTCTTATTAATA 58.478 40.000 8.18 0.00 0.00 0.98
932 965 5.368989 GCAGTGCTGGGTAGTCTTATTAAT 58.631 41.667 8.18 0.00 0.00 1.40
933 966 4.679639 CGCAGTGCTGGGTAGTCTTATTAA 60.680 45.833 14.33 0.00 38.53 1.40
934 967 3.181479 CGCAGTGCTGGGTAGTCTTATTA 60.181 47.826 14.33 0.00 38.53 0.98
935 968 2.418746 CGCAGTGCTGGGTAGTCTTATT 60.419 50.000 14.33 0.00 38.53 1.40
936 969 1.137086 CGCAGTGCTGGGTAGTCTTAT 59.863 52.381 14.33 0.00 38.53 1.73
937 970 0.530744 CGCAGTGCTGGGTAGTCTTA 59.469 55.000 14.33 0.00 38.53 2.10
938 971 1.293498 CGCAGTGCTGGGTAGTCTT 59.707 57.895 14.33 0.00 38.53 3.01
939 972 2.973899 CGCAGTGCTGGGTAGTCT 59.026 61.111 14.33 0.00 38.53 3.24
959 992 2.666895 CGATGATGCTCTGGCGTAGTAG 60.667 54.545 0.00 0.00 42.25 2.57
962 995 0.312102 TCGATGATGCTCTGGCGTAG 59.688 55.000 0.00 0.00 42.25 3.51
972 1005 3.826466 TCACGTATGATCTCGATGATGC 58.174 45.455 11.10 0.00 35.14 3.91
982 1015 2.923655 CCATGGCGTATCACGTATGATC 59.076 50.000 0.00 0.00 42.15 2.92
983 1016 5.424875 TGCCATGGCGTATCACGTATGAT 62.425 47.826 30.87 0.00 44.73 2.45
984 1017 1.604438 GCCATGGCGTATCACGTATGA 60.604 52.381 23.48 0.00 44.73 2.15
985 1018 0.790207 GCCATGGCGTATCACGTATG 59.210 55.000 23.48 5.99 44.73 2.39
987 1020 0.249280 CTGCCATGGCGTATCACGTA 60.249 55.000 30.87 9.81 44.73 3.57
988 1021 1.521457 CTGCCATGGCGTATCACGT 60.521 57.895 30.87 0.00 44.73 4.49
990 1023 1.153168 ACCTGCCATGGCGTATCAC 60.153 57.895 30.87 4.18 45.51 3.06
991 1024 1.153188 CACCTGCCATGGCGTATCA 60.153 57.895 30.87 12.89 45.51 2.15
992 1025 2.546494 GCACCTGCCATGGCGTATC 61.546 63.158 30.87 15.10 45.51 2.24
993 1026 2.516930 GCACCTGCCATGGCGTAT 60.517 61.111 30.87 16.03 45.51 3.06
997 1030 4.783621 TCTCGCACCTGCCATGGC 62.784 66.667 30.54 30.54 42.35 4.40
998 1031 2.184830 CATCTCGCACCTGCCATGG 61.185 63.158 7.63 7.63 37.91 3.66
999 1032 2.831366 GCATCTCGCACCTGCCATG 61.831 63.158 0.00 0.00 41.79 3.66
1035 1068 2.359850 GCCGTCAGGACAATGGCA 60.360 61.111 10.67 0.00 45.06 4.92
1084 1120 2.457778 CCACGGTAAACCCATCGCG 61.458 63.158 0.00 0.00 0.00 5.87
1265 1325 1.605738 AGGTACTCGAACTGCCCGT 60.606 57.895 0.00 0.00 0.00 5.28
1386 1449 2.505118 GCTGCTGGAGTCGTCGTC 60.505 66.667 0.00 0.00 0.00 4.20
1392 1455 2.467826 GGCGATTGCTGCTGGAGTC 61.468 63.158 4.59 0.00 42.25 3.36
1393 1456 2.437359 GGCGATTGCTGCTGGAGT 60.437 61.111 4.59 0.00 42.25 3.85
2012 2530 1.140852 CCATTATCGGGTCCAGCAGAA 59.859 52.381 0.00 0.00 0.00 3.02
2013 2531 0.758734 CCATTATCGGGTCCAGCAGA 59.241 55.000 0.00 0.00 0.00 4.26
2029 2547 1.826024 GCCGTGTCATCTCCTCCAT 59.174 57.895 0.00 0.00 0.00 3.41
2152 2688 1.741401 CGGCCAGATTCAGCGTCAA 60.741 57.895 2.24 0.00 0.00 3.18
2206 2742 0.109086 ATCTGCACCTCGACGAACAG 60.109 55.000 0.00 4.89 0.00 3.16
2461 3010 4.536065 TGACAAAGAGCAACGCATAAAAG 58.464 39.130 0.00 0.00 0.00 2.27
2462 3011 4.036262 ACTGACAAAGAGCAACGCATAAAA 59.964 37.500 0.00 0.00 0.00 1.52
2463 3012 3.563808 ACTGACAAAGAGCAACGCATAAA 59.436 39.130 0.00 0.00 0.00 1.40
2464 3013 3.138304 ACTGACAAAGAGCAACGCATAA 58.862 40.909 0.00 0.00 0.00 1.90
2465 3014 2.766313 ACTGACAAAGAGCAACGCATA 58.234 42.857 0.00 0.00 0.00 3.14
2476 3025 1.151668 CAGGAGCCGAACTGACAAAG 58.848 55.000 0.00 0.00 36.86 2.77
2478 3027 0.756294 TTCAGGAGCCGAACTGACAA 59.244 50.000 0.00 0.00 42.91 3.18
2480 3029 1.363744 CATTCAGGAGCCGAACTGAC 58.636 55.000 0.00 0.00 42.91 3.51
2483 3032 1.078143 GGCATTCAGGAGCCGAACT 60.078 57.895 0.00 0.00 41.70 3.01
2505 3054 3.840666 AGACCAACCAAAGAGAGCTCATA 59.159 43.478 17.77 0.00 0.00 2.15
2508 3057 2.849294 AGACCAACCAAAGAGAGCTC 57.151 50.000 5.27 5.27 0.00 4.09
2509 3058 3.117888 TGAAAGACCAACCAAAGAGAGCT 60.118 43.478 0.00 0.00 0.00 4.09
2511 3060 4.708177 TCTGAAAGACCAACCAAAGAGAG 58.292 43.478 0.00 0.00 38.67 3.20
2521 3070 5.552870 AGAAAGCTACTCTGAAAGACCAA 57.447 39.130 0.00 0.00 38.67 3.67
2523 3072 9.654663 TTTATTAGAAAGCTACTCTGAAAGACC 57.345 33.333 8.23 0.00 38.67 3.85
2562 3112 7.494952 GCCAAGGTTTTACTTAATCGATACTCT 59.505 37.037 0.00 0.00 0.00 3.24
2577 3127 4.581105 TGGCACGCCAAGGTTTTA 57.419 50.000 8.67 0.00 44.12 1.52
2585 3135 1.904287 AAGATAAGTTTGGCACGCCA 58.096 45.000 6.67 6.67 45.63 5.69
2586 3136 3.427098 GGTTAAGATAAGTTTGGCACGCC 60.427 47.826 0.00 0.00 0.00 5.68
2587 3137 3.726782 CGGTTAAGATAAGTTTGGCACGC 60.727 47.826 0.00 0.00 0.00 5.34
2588 3138 3.726782 GCGGTTAAGATAAGTTTGGCACG 60.727 47.826 0.00 0.00 0.00 5.34
2589 3139 3.427098 GGCGGTTAAGATAAGTTTGGCAC 60.427 47.826 0.00 0.00 0.00 5.01
2590 3140 2.750712 GGCGGTTAAGATAAGTTTGGCA 59.249 45.455 0.00 0.00 0.00 4.92
2591 3141 2.098607 GGGCGGTTAAGATAAGTTTGGC 59.901 50.000 0.00 0.00 0.00 4.52
2592 3142 3.349022 TGGGCGGTTAAGATAAGTTTGG 58.651 45.455 0.00 0.00 0.00 3.28
2593 3143 4.007659 ACTGGGCGGTTAAGATAAGTTTG 58.992 43.478 0.00 0.00 0.00 2.93
2594 3144 4.019591 AGACTGGGCGGTTAAGATAAGTTT 60.020 41.667 0.00 0.00 0.00 2.66
2595 3145 3.518303 AGACTGGGCGGTTAAGATAAGTT 59.482 43.478 0.00 0.00 0.00 2.66
2596 3146 3.105283 AGACTGGGCGGTTAAGATAAGT 58.895 45.455 0.00 0.00 0.00 2.24
2597 3147 3.458189 CAGACTGGGCGGTTAAGATAAG 58.542 50.000 0.00 0.00 0.00 1.73
2598 3148 2.169769 CCAGACTGGGCGGTTAAGATAA 59.830 50.000 14.26 0.00 32.67 1.75
2599 3149 1.760613 CCAGACTGGGCGGTTAAGATA 59.239 52.381 14.26 0.00 32.67 1.98
2600 3150 0.541863 CCAGACTGGGCGGTTAAGAT 59.458 55.000 14.26 0.00 32.67 2.40
2601 3151 1.980052 CCAGACTGGGCGGTTAAGA 59.020 57.895 14.26 0.00 32.67 2.10
2602 3152 1.745489 GCCAGACTGGGCGGTTAAG 60.745 63.158 23.09 0.00 45.40 1.85
2603 3153 2.349755 GCCAGACTGGGCGGTTAA 59.650 61.111 23.09 0.00 45.40 2.01
2686 3237 1.376609 GCACCACGGCAAGGAATAGG 61.377 60.000 0.00 0.00 0.00 2.57
2705 3256 6.972901 TGTAGTCATATGTCTGTTCGCTAAAG 59.027 38.462 12.07 0.00 0.00 1.85
2745 3296 4.659111 TTCACAGTCCGAACTACAAAGA 57.341 40.909 0.00 0.00 33.25 2.52
2927 3478 0.179076 ATCATTGCGCTGGACATCGA 60.179 50.000 9.73 0.00 0.00 3.59
2954 3505 5.647658 CACCATACATACCAGATTGTTGTGT 59.352 40.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.