Multiple sequence alignment - TraesCS3D01G122100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G122100 chr3D 100.000 2228 0 0 1 2228 79624104 79621877 0.000000e+00 4115.0
1 TraesCS3D01G122100 chr3B 88.395 1551 84 34 719 2228 125996287 125994792 0.000000e+00 1779.0
2 TraesCS3D01G122100 chr3A 90.207 725 37 12 718 1433 93704009 93703310 0.000000e+00 915.0
3 TraesCS3D01G122100 chr3A 89.008 655 42 9 1442 2090 93703271 93702641 0.000000e+00 784.0
4 TraesCS3D01G122100 chr3A 84.103 195 19 8 542 729 93704233 93704044 6.320000e-41 178.0
5 TraesCS3D01G122100 chrUn 83.221 149 22 3 144 291 74660396 74660250 1.390000e-27 134.0
6 TraesCS3D01G122100 chrUn 82.581 155 24 3 138 291 229381867 229382019 1.390000e-27 134.0
7 TraesCS3D01G122100 chr5D 80.128 156 26 5 138 291 30569386 30569234 6.500000e-21 111.0
8 TraesCS3D01G122100 chr2A 79.699 133 25 2 160 291 749449762 749449893 6.550000e-16 95.3
9 TraesCS3D01G122100 chr6A 77.193 171 26 7 134 292 473613752 473613921 1.100000e-13 87.9
10 TraesCS3D01G122100 chr4A 80.342 117 21 2 177 292 665640923 665640808 1.100000e-13 87.9
11 TraesCS3D01G122100 chr4A 83.784 74 8 2 222 291 632988459 632988532 1.430000e-07 67.6
12 TraesCS3D01G122100 chr7B 78.632 117 22 3 177 291 627608973 627609088 8.530000e-10 75.0
13 TraesCS3D01G122100 chr6B 84.932 73 9 1 219 291 137422135 137422205 3.070000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G122100 chr3D 79621877 79624104 2227 True 4115.000000 4115 100.000000 1 2228 1 chr3D.!!$R1 2227
1 TraesCS3D01G122100 chr3B 125994792 125996287 1495 True 1779.000000 1779 88.395000 719 2228 1 chr3B.!!$R1 1509
2 TraesCS3D01G122100 chr3A 93702641 93704233 1592 True 625.666667 915 87.772667 542 2090 3 chr3A.!!$R1 1548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 681 0.032017 AGTACCCCCTTGCGAGAGAT 60.032 55.0 1.22 0.0 0.0 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1687 1808 0.037303 CCATGCTCACACACCTTCCT 59.963 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.742053 TCGAACCAATAAGCTTGAGTGC 59.258 45.455 9.86 0.00 0.00 4.40
23 24 2.159517 CGAACCAATAAGCTTGAGTGCC 60.160 50.000 9.86 0.00 0.00 5.01
24 25 2.887151 ACCAATAAGCTTGAGTGCCT 57.113 45.000 9.86 0.00 0.00 4.75
25 26 2.716217 ACCAATAAGCTTGAGTGCCTC 58.284 47.619 9.86 0.00 0.00 4.70
26 27 1.667724 CCAATAAGCTTGAGTGCCTCG 59.332 52.381 9.86 0.00 32.35 4.63
27 28 1.063174 CAATAAGCTTGAGTGCCTCGC 59.937 52.381 9.86 0.00 32.35 5.03
28 29 0.462759 ATAAGCTTGAGTGCCTCGCC 60.463 55.000 9.86 0.00 32.35 5.54
29 30 1.544825 TAAGCTTGAGTGCCTCGCCT 61.545 55.000 9.86 0.00 32.35 5.52
30 31 2.359230 GCTTGAGTGCCTCGCCTT 60.359 61.111 0.00 0.00 32.35 4.35
31 32 2.394563 GCTTGAGTGCCTCGCCTTC 61.395 63.158 0.00 0.00 32.35 3.46
32 33 1.743252 CTTGAGTGCCTCGCCTTCC 60.743 63.158 0.00 0.00 32.35 3.46
33 34 2.177594 CTTGAGTGCCTCGCCTTCCT 62.178 60.000 0.00 0.00 32.35 3.36
34 35 2.125350 GAGTGCCTCGCCTTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
35 36 3.672295 GAGTGCCTCGCCTTCCTGG 62.672 68.421 0.00 0.00 39.35 4.45
45 46 3.589542 CTTCCTGGCCCCCACCAA 61.590 66.667 0.00 0.00 39.86 3.67
46 47 3.589542 TTCCTGGCCCCCACCAAG 61.590 66.667 0.00 0.00 39.86 3.61
47 48 4.608514 TCCTGGCCCCCACCAAGA 62.609 66.667 0.00 0.00 39.86 3.02
48 49 3.589542 CCTGGCCCCCACCAAGAA 61.590 66.667 0.00 0.00 39.86 2.52
49 50 2.525592 CTGGCCCCCACCAAGAAA 59.474 61.111 0.00 0.00 39.86 2.52
50 51 1.152355 CTGGCCCCCACCAAGAAAA 60.152 57.895 0.00 0.00 39.86 2.29
51 52 1.152355 TGGCCCCCACCAAGAAAAG 60.152 57.895 0.00 0.00 36.55 2.27
52 53 1.913262 GGCCCCCACCAAGAAAAGG 60.913 63.158 0.00 0.00 0.00 3.11
53 54 2.583441 GCCCCCACCAAGAAAAGGC 61.583 63.158 0.00 0.00 0.00 4.35
54 55 1.156095 CCCCCACCAAGAAAAGGCT 59.844 57.895 0.00 0.00 0.00 4.58
55 56 1.187567 CCCCCACCAAGAAAAGGCTG 61.188 60.000 0.00 0.00 0.00 4.85
56 57 0.178964 CCCCACCAAGAAAAGGCTGA 60.179 55.000 0.00 0.00 0.00 4.26
57 58 0.961753 CCCACCAAGAAAAGGCTGAC 59.038 55.000 0.00 0.00 0.00 3.51
58 59 1.691196 CCACCAAGAAAAGGCTGACA 58.309 50.000 0.00 0.00 0.00 3.58
59 60 1.338020 CCACCAAGAAAAGGCTGACAC 59.662 52.381 0.00 0.00 0.00 3.67
60 61 2.023673 CACCAAGAAAAGGCTGACACA 58.976 47.619 0.00 0.00 0.00 3.72
61 62 2.426738 CACCAAGAAAAGGCTGACACAA 59.573 45.455 0.00 0.00 0.00 3.33
62 63 3.096092 ACCAAGAAAAGGCTGACACAAA 58.904 40.909 0.00 0.00 0.00 2.83
63 64 3.119137 ACCAAGAAAAGGCTGACACAAAC 60.119 43.478 0.00 0.00 0.00 2.93
64 65 3.119173 CCAAGAAAAGGCTGACACAAACA 60.119 43.478 0.00 0.00 0.00 2.83
65 66 4.441913 CCAAGAAAAGGCTGACACAAACAT 60.442 41.667 0.00 0.00 0.00 2.71
66 67 5.111293 CAAGAAAAGGCTGACACAAACATT 58.889 37.500 0.00 0.00 0.00 2.71
67 68 6.272318 CAAGAAAAGGCTGACACAAACATTA 58.728 36.000 0.00 0.00 0.00 1.90
68 69 6.076981 AGAAAAGGCTGACACAAACATTAG 57.923 37.500 0.00 0.00 0.00 1.73
69 70 5.594317 AGAAAAGGCTGACACAAACATTAGT 59.406 36.000 0.00 0.00 0.00 2.24
70 71 5.438761 AAAGGCTGACACAAACATTAGTC 57.561 39.130 0.00 0.00 0.00 2.59
71 72 4.085357 AGGCTGACACAAACATTAGTCA 57.915 40.909 0.00 0.00 38.56 3.41
72 73 3.815401 AGGCTGACACAAACATTAGTCAC 59.185 43.478 0.00 0.00 36.20 3.67
73 74 3.058224 GGCTGACACAAACATTAGTCACC 60.058 47.826 0.00 0.00 36.20 4.02
74 75 3.563808 GCTGACACAAACATTAGTCACCA 59.436 43.478 0.00 0.00 36.20 4.17
75 76 4.554723 GCTGACACAAACATTAGTCACCAC 60.555 45.833 0.00 0.00 36.20 4.16
76 77 4.518249 TGACACAAACATTAGTCACCACA 58.482 39.130 0.00 0.00 36.20 4.17
77 78 4.574421 TGACACAAACATTAGTCACCACAG 59.426 41.667 0.00 0.00 36.20 3.66
78 79 4.523083 ACACAAACATTAGTCACCACAGT 58.477 39.130 0.00 0.00 0.00 3.55
79 80 4.335315 ACACAAACATTAGTCACCACAGTG 59.665 41.667 0.00 0.00 46.00 3.66
80 81 3.882888 ACAAACATTAGTCACCACAGTGG 59.117 43.478 18.93 18.93 44.64 4.00
81 82 4.133820 CAAACATTAGTCACCACAGTGGA 58.866 43.478 27.39 0.92 44.64 4.02
82 83 3.685139 ACATTAGTCACCACAGTGGAG 57.315 47.619 27.39 18.87 44.64 3.86
83 84 2.289694 ACATTAGTCACCACAGTGGAGC 60.290 50.000 27.39 13.95 44.64 4.70
84 85 1.419381 TTAGTCACCACAGTGGAGCA 58.581 50.000 27.39 6.19 44.64 4.26
85 86 1.419381 TAGTCACCACAGTGGAGCAA 58.581 50.000 27.39 5.28 44.64 3.91
86 87 0.546122 AGTCACCACAGTGGAGCAAA 59.454 50.000 27.39 0.00 44.64 3.68
87 88 1.143684 AGTCACCACAGTGGAGCAAAT 59.856 47.619 27.39 0.00 44.64 2.32
88 89 1.267806 GTCACCACAGTGGAGCAAATG 59.732 52.381 27.39 12.70 44.64 2.32
89 90 0.599558 CACCACAGTGGAGCAAATGG 59.400 55.000 27.39 0.00 40.96 3.16
90 91 0.478072 ACCACAGTGGAGCAAATGGA 59.522 50.000 27.39 0.00 40.96 3.41
91 92 0.883833 CCACAGTGGAGCAAATGGAC 59.116 55.000 15.35 0.00 40.96 4.02
92 93 1.546323 CCACAGTGGAGCAAATGGACT 60.546 52.381 15.35 0.00 40.96 3.85
93 94 1.808945 CACAGTGGAGCAAATGGACTC 59.191 52.381 0.00 0.00 0.00 3.36
94 95 1.421268 ACAGTGGAGCAAATGGACTCA 59.579 47.619 0.00 0.00 34.48 3.41
95 96 2.082231 CAGTGGAGCAAATGGACTCAG 58.918 52.381 0.00 0.00 34.48 3.35
96 97 1.980765 AGTGGAGCAAATGGACTCAGA 59.019 47.619 0.00 0.00 34.48 3.27
97 98 2.575279 AGTGGAGCAAATGGACTCAGAT 59.425 45.455 0.00 0.00 34.48 2.90
98 99 2.681848 GTGGAGCAAATGGACTCAGATG 59.318 50.000 0.00 0.00 34.48 2.90
99 100 2.573009 TGGAGCAAATGGACTCAGATGA 59.427 45.455 0.00 0.00 34.48 2.92
100 101 3.009363 TGGAGCAAATGGACTCAGATGAA 59.991 43.478 0.00 0.00 34.48 2.57
101 102 3.626670 GGAGCAAATGGACTCAGATGAAG 59.373 47.826 0.00 0.00 34.48 3.02
102 103 3.618351 AGCAAATGGACTCAGATGAAGG 58.382 45.455 0.00 0.00 0.00 3.46
103 104 2.686915 GCAAATGGACTCAGATGAAGGG 59.313 50.000 0.00 0.00 0.00 3.95
104 105 2.686915 CAAATGGACTCAGATGAAGGGC 59.313 50.000 0.00 0.00 0.00 5.19
105 106 1.588239 ATGGACTCAGATGAAGGGCA 58.412 50.000 0.00 0.00 0.00 5.36
106 107 1.361204 TGGACTCAGATGAAGGGCAA 58.639 50.000 0.00 0.00 0.00 4.52
107 108 1.918262 TGGACTCAGATGAAGGGCAAT 59.082 47.619 0.00 0.00 0.00 3.56
108 109 3.114606 TGGACTCAGATGAAGGGCAATA 58.885 45.455 0.00 0.00 0.00 1.90
109 110 3.135348 TGGACTCAGATGAAGGGCAATAG 59.865 47.826 0.00 0.00 0.00 1.73
110 111 3.135530 GGACTCAGATGAAGGGCAATAGT 59.864 47.826 0.00 0.00 0.00 2.12
111 112 4.384647 GGACTCAGATGAAGGGCAATAGTT 60.385 45.833 0.00 0.00 0.00 2.24
112 113 4.775236 ACTCAGATGAAGGGCAATAGTTC 58.225 43.478 0.00 0.00 0.00 3.01
113 114 4.472833 ACTCAGATGAAGGGCAATAGTTCT 59.527 41.667 0.00 0.00 0.00 3.01
114 115 5.045286 ACTCAGATGAAGGGCAATAGTTCTT 60.045 40.000 0.00 0.00 0.00 2.52
115 116 5.819991 TCAGATGAAGGGCAATAGTTCTTT 58.180 37.500 0.00 0.00 0.00 2.52
116 117 6.248433 TCAGATGAAGGGCAATAGTTCTTTT 58.752 36.000 0.00 0.00 0.00 2.27
117 118 7.402054 TCAGATGAAGGGCAATAGTTCTTTTA 58.598 34.615 0.00 0.00 0.00 1.52
118 119 8.055181 TCAGATGAAGGGCAATAGTTCTTTTAT 58.945 33.333 0.00 0.00 0.00 1.40
119 120 8.689972 CAGATGAAGGGCAATAGTTCTTTTATT 58.310 33.333 0.00 0.00 0.00 1.40
120 121 8.907885 AGATGAAGGGCAATAGTTCTTTTATTC 58.092 33.333 0.00 0.00 0.00 1.75
121 122 8.593945 ATGAAGGGCAATAGTTCTTTTATTCA 57.406 30.769 0.00 0.00 0.00 2.57
122 123 8.415950 TGAAGGGCAATAGTTCTTTTATTCAA 57.584 30.769 0.00 0.00 0.00 2.69
123 124 8.865090 TGAAGGGCAATAGTTCTTTTATTCAAA 58.135 29.630 0.00 0.00 0.00 2.69
124 125 9.875691 GAAGGGCAATAGTTCTTTTATTCAAAT 57.124 29.630 0.00 0.00 0.00 2.32
126 127 9.657419 AGGGCAATAGTTCTTTTATTCAAATTG 57.343 29.630 0.00 0.00 0.00 2.32
127 128 8.882736 GGGCAATAGTTCTTTTATTCAAATTGG 58.117 33.333 0.00 0.00 0.00 3.16
128 129 9.435688 GGCAATAGTTCTTTTATTCAAATTGGT 57.564 29.630 0.00 0.00 0.00 3.67
134 135 9.914131 AGTTCTTTTATTCAAATTGGTTAGAGC 57.086 29.630 0.00 0.00 0.00 4.09
135 136 9.691362 GTTCTTTTATTCAAATTGGTTAGAGCA 57.309 29.630 0.00 0.00 0.00 4.26
139 140 9.434420 TTTTATTCAAATTGGTTAGAGCAATGG 57.566 29.630 6.17 3.21 44.57 3.16
140 141 4.454728 TCAAATTGGTTAGAGCAATGGC 57.545 40.909 6.17 0.00 44.57 4.40
141 142 3.119531 TCAAATTGGTTAGAGCAATGGCG 60.120 43.478 6.17 0.00 44.57 5.69
142 143 2.418368 ATTGGTTAGAGCAATGGCGA 57.582 45.000 4.72 0.00 43.78 5.54
143 144 2.722094 ATTGGTTAGAGCAATGGCGAA 58.278 42.857 4.72 0.00 43.78 4.70
144 145 2.684881 ATTGGTTAGAGCAATGGCGAAG 59.315 45.455 4.72 0.00 43.78 3.79
145 146 5.038490 ATTGGTTAGAGCAATGGCGAAGC 62.038 47.826 4.72 0.00 45.93 3.86
162 163 2.608640 GCTTGCACCAAAAAGCTGG 58.391 52.632 0.00 0.00 44.33 4.85
163 164 0.881600 GCTTGCACCAAAAAGCTGGG 60.882 55.000 0.00 0.00 44.33 4.45
164 165 0.881600 CTTGCACCAAAAAGCTGGGC 60.882 55.000 0.00 0.00 41.16 5.36
165 166 2.356194 GCACCAAAAAGCTGGGCG 60.356 61.111 0.00 0.00 41.16 6.13
166 167 2.339712 CACCAAAAAGCTGGGCGG 59.660 61.111 0.00 0.00 41.16 6.13
167 168 2.917227 ACCAAAAAGCTGGGCGGG 60.917 61.111 0.00 0.00 41.16 6.13
168 169 4.377708 CCAAAAAGCTGGGCGGGC 62.378 66.667 0.00 0.00 32.32 6.13
169 170 4.377708 CAAAAAGCTGGGCGGGCC 62.378 66.667 14.65 14.65 0.00 5.80
180 181 3.279875 GCGGGCCGGCAATAAGAG 61.280 66.667 30.85 11.44 0.00 2.85
181 182 2.504032 CGGGCCGGCAATAAGAGA 59.496 61.111 30.85 0.00 0.00 3.10
182 183 1.071471 CGGGCCGGCAATAAGAGAT 59.929 57.895 30.85 0.00 0.00 2.75
183 184 0.535102 CGGGCCGGCAATAAGAGATT 60.535 55.000 30.85 0.00 0.00 2.40
184 185 0.954452 GGGCCGGCAATAAGAGATTG 59.046 55.000 30.85 0.00 0.00 2.67
185 186 1.680338 GGCCGGCAATAAGAGATTGT 58.320 50.000 30.85 0.00 0.00 2.71
186 187 2.024414 GGCCGGCAATAAGAGATTGTT 58.976 47.619 30.85 0.00 0.00 2.83
187 188 3.211045 GGCCGGCAATAAGAGATTGTTA 58.789 45.455 30.85 0.00 0.00 2.41
188 189 3.003378 GGCCGGCAATAAGAGATTGTTAC 59.997 47.826 30.85 0.00 0.00 2.50
189 190 3.877508 GCCGGCAATAAGAGATTGTTACT 59.122 43.478 24.80 0.00 0.00 2.24
190 191 5.054477 GCCGGCAATAAGAGATTGTTACTA 58.946 41.667 24.80 0.00 0.00 1.82
191 192 5.177696 GCCGGCAATAAGAGATTGTTACTAG 59.822 44.000 24.80 0.00 0.00 2.57
192 193 5.177696 CCGGCAATAAGAGATTGTTACTAGC 59.822 44.000 0.00 0.00 0.00 3.42
193 194 5.986135 CGGCAATAAGAGATTGTTACTAGCT 59.014 40.000 0.00 0.00 0.00 3.32
194 195 7.145985 CGGCAATAAGAGATTGTTACTAGCTA 58.854 38.462 0.00 0.00 0.00 3.32
195 196 7.327275 CGGCAATAAGAGATTGTTACTAGCTAG 59.673 40.741 19.44 19.44 0.00 3.42
196 197 8.145122 GGCAATAAGAGATTGTTACTAGCTAGT 58.855 37.037 28.50 28.50 40.24 2.57
213 214 9.148879 ACTAGCTAGTATTTTATGACTCATGGT 57.851 33.333 24.97 0.00 34.13 3.55
214 215 9.632807 CTAGCTAGTATTTTATGACTCATGGTC 57.367 37.037 12.92 7.22 44.70 4.02
215 216 8.256356 AGCTAGTATTTTATGACTCATGGTCT 57.744 34.615 13.32 4.62 44.74 3.85
216 217 8.147058 AGCTAGTATTTTATGACTCATGGTCTG 58.853 37.037 13.32 0.00 44.74 3.51
217 218 7.386299 GCTAGTATTTTATGACTCATGGTCTGG 59.614 40.741 13.32 0.00 44.74 3.86
218 219 6.058183 AGTATTTTATGACTCATGGTCTGGC 58.942 40.000 13.32 0.00 44.74 4.85
219 220 4.574674 TTTTATGACTCATGGTCTGGCT 57.425 40.909 13.32 2.29 44.74 4.75
220 221 5.692115 TTTTATGACTCATGGTCTGGCTA 57.308 39.130 13.32 0.00 44.74 3.93
221 222 5.894298 TTTATGACTCATGGTCTGGCTAT 57.106 39.130 13.32 3.80 44.74 2.97
222 223 6.994421 TTTATGACTCATGGTCTGGCTATA 57.006 37.500 13.32 3.07 44.74 1.31
223 224 6.994421 TTATGACTCATGGTCTGGCTATAA 57.006 37.500 13.32 7.47 44.74 0.98
224 225 5.894298 ATGACTCATGGTCTGGCTATAAA 57.106 39.130 13.32 0.00 44.74 1.40
225 226 5.894298 TGACTCATGGTCTGGCTATAAAT 57.106 39.130 13.32 0.00 44.74 1.40
226 227 5.614308 TGACTCATGGTCTGGCTATAAATG 58.386 41.667 13.32 0.00 44.74 2.32
227 228 4.392940 ACTCATGGTCTGGCTATAAATGC 58.607 43.478 0.00 0.00 0.00 3.56
228 229 3.402110 TCATGGTCTGGCTATAAATGCG 58.598 45.455 0.00 0.00 0.00 4.73
229 230 3.070878 TCATGGTCTGGCTATAAATGCGA 59.929 43.478 0.00 0.00 0.00 5.10
230 231 3.111853 TGGTCTGGCTATAAATGCGAG 57.888 47.619 0.00 0.00 37.56 5.03
231 232 2.224281 TGGTCTGGCTATAAATGCGAGG 60.224 50.000 0.00 0.00 36.99 4.63
232 233 2.037251 GGTCTGGCTATAAATGCGAGGA 59.963 50.000 0.00 0.00 36.99 3.71
233 234 3.321497 GTCTGGCTATAAATGCGAGGAG 58.679 50.000 0.00 0.00 36.99 3.69
234 235 2.300152 TCTGGCTATAAATGCGAGGAGG 59.700 50.000 0.00 0.00 36.99 4.30
235 236 2.300152 CTGGCTATAAATGCGAGGAGGA 59.700 50.000 0.00 0.00 33.59 3.71
236 237 2.300152 TGGCTATAAATGCGAGGAGGAG 59.700 50.000 0.00 0.00 0.00 3.69
237 238 2.342179 GCTATAAATGCGAGGAGGAGC 58.658 52.381 0.00 0.00 0.00 4.70
238 239 2.028567 GCTATAAATGCGAGGAGGAGCT 60.029 50.000 0.00 0.00 0.00 4.09
239 240 2.829741 ATAAATGCGAGGAGGAGCTC 57.170 50.000 4.71 4.71 0.00 4.09
250 251 0.175531 GAGGAGCTCCAGAACTGAGC 59.824 60.000 33.90 7.99 41.85 4.26
251 252 0.543883 AGGAGCTCCAGAACTGAGCA 60.544 55.000 33.90 0.00 43.78 4.26
252 253 0.108233 GGAGCTCCAGAACTGAGCAG 60.108 60.000 28.43 0.00 43.78 4.24
253 254 0.108233 GAGCTCCAGAACTGAGCAGG 60.108 60.000 14.02 0.00 43.78 4.85
254 255 0.543883 AGCTCCAGAACTGAGCAGGA 60.544 55.000 14.02 0.00 43.78 3.86
255 256 0.390998 GCTCCAGAACTGAGCAGGAC 60.391 60.000 7.35 0.00 41.24 3.85
256 257 0.972134 CTCCAGAACTGAGCAGGACA 59.028 55.000 3.19 0.00 0.00 4.02
257 258 1.554160 CTCCAGAACTGAGCAGGACAT 59.446 52.381 3.19 0.00 0.00 3.06
258 259 1.277273 TCCAGAACTGAGCAGGACATG 59.723 52.381 3.19 0.00 0.00 3.21
259 260 1.678123 CCAGAACTGAGCAGGACATGG 60.678 57.143 3.19 1.46 0.00 3.66
260 261 0.035630 AGAACTGAGCAGGACATGGC 60.036 55.000 0.00 0.00 0.00 4.40
261 262 0.035630 GAACTGAGCAGGACATGGCT 60.036 55.000 0.00 0.00 44.48 4.75
266 267 3.491208 AGCAGGACATGGCTCATTC 57.509 52.632 0.00 0.00 34.76 2.67
267 268 0.463295 AGCAGGACATGGCTCATTCG 60.463 55.000 0.00 0.00 34.76 3.34
268 269 1.442526 GCAGGACATGGCTCATTCGG 61.443 60.000 0.00 0.00 0.00 4.30
269 270 1.153086 AGGACATGGCTCATTCGGC 60.153 57.895 0.00 0.00 0.00 5.54
275 276 3.521796 GGCTCATTCGGCCTTGCC 61.522 66.667 0.00 1.30 45.57 4.52
284 285 2.514824 GGCCTTGCCTAAGCTCCG 60.515 66.667 0.00 0.00 46.69 4.63
285 286 3.205536 GCCTTGCCTAAGCTCCGC 61.206 66.667 0.00 0.00 40.80 5.54
286 287 2.514824 CCTTGCCTAAGCTCCGCC 60.515 66.667 0.00 0.00 40.80 6.13
287 288 2.268920 CTTGCCTAAGCTCCGCCA 59.731 61.111 0.00 0.00 40.80 5.69
288 289 1.817099 CTTGCCTAAGCTCCGCCAG 60.817 63.158 0.00 0.00 40.80 4.85
289 290 2.527951 CTTGCCTAAGCTCCGCCAGT 62.528 60.000 0.00 0.00 40.80 4.00
290 291 2.512515 GCCTAAGCTCCGCCAGTG 60.513 66.667 0.00 0.00 35.50 3.66
291 292 2.187946 CCTAAGCTCCGCCAGTGG 59.812 66.667 4.20 4.20 0.00 4.00
292 293 2.187946 CTAAGCTCCGCCAGTGGG 59.812 66.667 12.15 0.59 37.18 4.61
293 294 2.606519 TAAGCTCCGCCAGTGGGT 60.607 61.111 12.15 0.00 36.17 4.51
294 295 2.185310 CTAAGCTCCGCCAGTGGGTT 62.185 60.000 12.15 0.00 36.17 4.11
295 296 2.463589 TAAGCTCCGCCAGTGGGTTG 62.464 60.000 12.15 0.00 36.17 3.77
297 298 3.636231 CTCCGCCAGTGGGTTGGA 61.636 66.667 12.15 3.44 40.87 3.53
298 299 3.612247 CTCCGCCAGTGGGTTGGAG 62.612 68.421 12.15 8.94 45.91 3.86
300 301 3.953775 CGCCAGTGGGTTGGAGGT 61.954 66.667 12.15 0.00 40.87 3.85
301 302 2.282462 GCCAGTGGGTTGGAGGTG 60.282 66.667 12.15 0.00 40.87 4.00
302 303 2.436109 CCAGTGGGTTGGAGGTGG 59.564 66.667 0.00 0.00 40.87 4.61
303 304 2.436109 CAGTGGGTTGGAGGTGGG 59.564 66.667 0.00 0.00 0.00 4.61
304 305 3.580319 AGTGGGTTGGAGGTGGGC 61.580 66.667 0.00 0.00 0.00 5.36
305 306 3.897122 GTGGGTTGGAGGTGGGCA 61.897 66.667 0.00 0.00 0.00 5.36
306 307 3.106609 TGGGTTGGAGGTGGGCAA 61.107 61.111 0.00 0.00 0.00 4.52
307 308 2.200092 GGGTTGGAGGTGGGCAAA 59.800 61.111 0.00 0.00 0.00 3.68
308 309 1.229177 GGGTTGGAGGTGGGCAAAT 60.229 57.895 0.00 0.00 0.00 2.32
309 310 0.040499 GGGTTGGAGGTGGGCAAATA 59.960 55.000 0.00 0.00 0.00 1.40
310 311 1.551329 GGGTTGGAGGTGGGCAAATAA 60.551 52.381 0.00 0.00 0.00 1.40
311 312 1.548719 GGTTGGAGGTGGGCAAATAAC 59.451 52.381 0.00 0.00 0.00 1.89
312 313 1.548719 GTTGGAGGTGGGCAAATAACC 59.451 52.381 0.00 0.00 0.00 2.85
313 314 0.780637 TGGAGGTGGGCAAATAACCA 59.219 50.000 0.00 0.00 36.37 3.67
314 315 1.148027 TGGAGGTGGGCAAATAACCAA 59.852 47.619 0.00 0.00 38.73 3.67
315 316 1.548719 GGAGGTGGGCAAATAACCAAC 59.451 52.381 0.00 0.00 44.89 3.77
316 317 2.243810 GAGGTGGGCAAATAACCAACA 58.756 47.619 1.24 0.00 46.97 3.33
317 318 2.630580 GAGGTGGGCAAATAACCAACAA 59.369 45.455 1.24 0.00 46.97 2.83
318 319 2.367241 AGGTGGGCAAATAACCAACAAC 59.633 45.455 1.24 0.00 46.97 3.32
319 320 2.103263 GGTGGGCAAATAACCAACAACA 59.897 45.455 0.00 0.00 43.97 3.33
320 321 3.244387 GGTGGGCAAATAACCAACAACAT 60.244 43.478 0.00 0.00 43.97 2.71
321 322 3.993736 GTGGGCAAATAACCAACAACATC 59.006 43.478 0.00 0.00 38.73 3.06
322 323 3.643320 TGGGCAAATAACCAACAACATCA 59.357 39.130 0.00 0.00 32.89 3.07
323 324 3.993736 GGGCAAATAACCAACAACATCAC 59.006 43.478 0.00 0.00 0.00 3.06
324 325 3.672867 GGCAAATAACCAACAACATCACG 59.327 43.478 0.00 0.00 0.00 4.35
325 326 4.295051 GCAAATAACCAACAACATCACGT 58.705 39.130 0.00 0.00 0.00 4.49
326 327 5.453648 GCAAATAACCAACAACATCACGTA 58.546 37.500 0.00 0.00 0.00 3.57
327 328 5.567534 GCAAATAACCAACAACATCACGTAG 59.432 40.000 0.00 0.00 0.00 3.51
328 329 4.939509 ATAACCAACAACATCACGTAGC 57.060 40.909 0.00 0.00 0.00 3.58
329 330 2.248280 ACCAACAACATCACGTAGCA 57.752 45.000 0.00 0.00 0.00 3.49
330 331 2.566913 ACCAACAACATCACGTAGCAA 58.433 42.857 0.00 0.00 0.00 3.91
331 332 2.946329 ACCAACAACATCACGTAGCAAA 59.054 40.909 0.00 0.00 0.00 3.68
332 333 3.003275 ACCAACAACATCACGTAGCAAAG 59.997 43.478 0.00 0.00 0.00 2.77
333 334 3.003275 CCAACAACATCACGTAGCAAAGT 59.997 43.478 0.00 0.00 0.00 2.66
334 335 4.211389 CAACAACATCACGTAGCAAAGTC 58.789 43.478 0.00 0.00 0.00 3.01
335 336 2.475111 ACAACATCACGTAGCAAAGTCG 59.525 45.455 0.00 0.00 0.00 4.18
336 337 2.717580 ACATCACGTAGCAAAGTCGA 57.282 45.000 0.00 0.00 0.00 4.20
337 338 3.021269 ACATCACGTAGCAAAGTCGAA 57.979 42.857 0.00 0.00 0.00 3.71
338 339 3.585862 ACATCACGTAGCAAAGTCGAAT 58.414 40.909 0.00 0.00 0.00 3.34
339 340 4.740268 ACATCACGTAGCAAAGTCGAATA 58.260 39.130 0.00 0.00 0.00 1.75
340 341 5.165676 ACATCACGTAGCAAAGTCGAATAA 58.834 37.500 0.00 0.00 0.00 1.40
341 342 5.288712 ACATCACGTAGCAAAGTCGAATAAG 59.711 40.000 0.00 0.00 0.00 1.73
342 343 4.801891 TCACGTAGCAAAGTCGAATAAGT 58.198 39.130 0.00 0.00 0.00 2.24
343 344 5.224888 TCACGTAGCAAAGTCGAATAAGTT 58.775 37.500 0.00 0.00 0.00 2.66
344 345 5.693104 TCACGTAGCAAAGTCGAATAAGTTT 59.307 36.000 0.00 0.00 0.00 2.66
345 346 6.007677 CACGTAGCAAAGTCGAATAAGTTTC 58.992 40.000 0.00 0.00 0.00 2.78
346 347 5.924825 ACGTAGCAAAGTCGAATAAGTTTCT 59.075 36.000 0.00 0.00 0.00 2.52
347 348 6.089150 ACGTAGCAAAGTCGAATAAGTTTCTC 59.911 38.462 0.00 0.00 0.00 2.87
348 349 6.308282 CGTAGCAAAGTCGAATAAGTTTCTCT 59.692 38.462 0.00 0.00 0.00 3.10
349 350 7.484007 CGTAGCAAAGTCGAATAAGTTTCTCTA 59.516 37.037 0.00 0.00 0.00 2.43
350 351 7.820044 AGCAAAGTCGAATAAGTTTCTCTAG 57.180 36.000 0.00 0.00 0.00 2.43
351 352 7.603651 AGCAAAGTCGAATAAGTTTCTCTAGA 58.396 34.615 0.00 0.00 0.00 2.43
352 353 8.254508 AGCAAAGTCGAATAAGTTTCTCTAGAT 58.745 33.333 0.00 0.00 0.00 1.98
353 354 8.536407 GCAAAGTCGAATAAGTTTCTCTAGATC 58.464 37.037 0.00 0.00 0.00 2.75
354 355 9.574458 CAAAGTCGAATAAGTTTCTCTAGATCA 57.426 33.333 0.00 0.00 0.00 2.92
355 356 9.796120 AAAGTCGAATAAGTTTCTCTAGATCAG 57.204 33.333 0.00 0.00 0.00 2.90
356 357 8.740123 AGTCGAATAAGTTTCTCTAGATCAGA 57.260 34.615 0.00 0.00 0.00 3.27
357 358 8.617809 AGTCGAATAAGTTTCTCTAGATCAGAC 58.382 37.037 0.00 0.00 0.00 3.51
358 359 8.399425 GTCGAATAAGTTTCTCTAGATCAGACA 58.601 37.037 0.00 0.00 0.00 3.41
359 360 8.616942 TCGAATAAGTTTCTCTAGATCAGACAG 58.383 37.037 0.00 0.00 0.00 3.51
360 361 7.860373 CGAATAAGTTTCTCTAGATCAGACAGG 59.140 40.741 0.00 0.00 0.00 4.00
361 362 5.930837 AAGTTTCTCTAGATCAGACAGGG 57.069 43.478 0.00 0.00 0.00 4.45
362 363 4.941713 AGTTTCTCTAGATCAGACAGGGT 58.058 43.478 0.00 0.00 0.00 4.34
363 364 5.337788 AGTTTCTCTAGATCAGACAGGGTT 58.662 41.667 0.00 0.00 0.00 4.11
364 365 5.782845 AGTTTCTCTAGATCAGACAGGGTTT 59.217 40.000 0.00 0.00 0.00 3.27
365 366 5.667539 TTCTCTAGATCAGACAGGGTTTG 57.332 43.478 0.00 0.00 0.00 2.93
366 367 4.026744 TCTCTAGATCAGACAGGGTTTGG 58.973 47.826 0.00 0.00 0.00 3.28
367 368 3.107601 TCTAGATCAGACAGGGTTTGGG 58.892 50.000 0.00 0.00 0.00 4.12
368 369 0.995024 AGATCAGACAGGGTTTGGGG 59.005 55.000 0.00 0.00 0.00 4.96
369 370 0.681243 GATCAGACAGGGTTTGGGGC 60.681 60.000 0.00 0.00 0.00 5.80
370 371 2.155197 ATCAGACAGGGTTTGGGGCC 62.155 60.000 0.00 0.00 0.00 5.80
371 372 2.452491 AGACAGGGTTTGGGGCCT 60.452 61.111 0.84 0.00 0.00 5.19
372 373 2.283173 GACAGGGTTTGGGGCCTG 60.283 66.667 0.84 0.00 36.49 4.85
373 374 3.886550 GACAGGGTTTGGGGCCTGG 62.887 68.421 0.84 0.00 34.93 4.45
374 375 3.914713 CAGGGTTTGGGGCCTGGT 61.915 66.667 0.84 0.00 0.00 4.00
375 376 3.116950 AGGGTTTGGGGCCTGGTT 61.117 61.111 0.84 0.00 0.00 3.67
376 377 1.780911 AGGGTTTGGGGCCTGGTTA 60.781 57.895 0.84 0.00 0.00 2.85
377 378 1.153041 AGGGTTTGGGGCCTGGTTAT 61.153 55.000 0.84 0.00 0.00 1.89
378 379 0.686441 GGGTTTGGGGCCTGGTTATC 60.686 60.000 0.84 0.00 0.00 1.75
379 380 0.040499 GGTTTGGGGCCTGGTTATCA 59.960 55.000 0.84 0.00 0.00 2.15
380 381 1.474330 GTTTGGGGCCTGGTTATCAG 58.526 55.000 0.84 0.00 43.00 2.90
381 382 1.005450 GTTTGGGGCCTGGTTATCAGA 59.995 52.381 0.84 0.00 46.18 3.27
382 383 1.607225 TTGGGGCCTGGTTATCAGAT 58.393 50.000 0.84 0.00 46.18 2.90
383 384 2.505672 TGGGGCCTGGTTATCAGATA 57.494 50.000 0.84 0.00 46.18 1.98
384 385 2.338809 TGGGGCCTGGTTATCAGATAG 58.661 52.381 0.84 0.00 46.18 2.08
385 386 2.339769 GGGGCCTGGTTATCAGATAGT 58.660 52.381 0.84 0.00 46.18 2.12
386 387 2.039084 GGGGCCTGGTTATCAGATAGTG 59.961 54.545 0.84 0.00 46.18 2.74
387 388 2.706190 GGGCCTGGTTATCAGATAGTGT 59.294 50.000 0.84 0.00 46.18 3.55
388 389 3.136626 GGGCCTGGTTATCAGATAGTGTT 59.863 47.826 0.84 0.00 46.18 3.32
389 390 4.385310 GGGCCTGGTTATCAGATAGTGTTT 60.385 45.833 0.84 0.00 46.18 2.83
390 391 5.163237 GGGCCTGGTTATCAGATAGTGTTTA 60.163 44.000 0.84 0.00 46.18 2.01
391 392 6.465894 GGGCCTGGTTATCAGATAGTGTTTAT 60.466 42.308 0.84 0.00 46.18 1.40
392 393 7.256547 GGGCCTGGTTATCAGATAGTGTTTATA 60.257 40.741 0.84 0.00 46.18 0.98
393 394 7.819900 GGCCTGGTTATCAGATAGTGTTTATAG 59.180 40.741 0.00 0.00 46.18 1.31
394 395 8.368668 GCCTGGTTATCAGATAGTGTTTATAGT 58.631 37.037 0.00 0.00 46.18 2.12
402 403 8.762481 TCAGATAGTGTTTATAGTTAGGCTCA 57.238 34.615 0.00 0.00 0.00 4.26
403 404 8.630917 TCAGATAGTGTTTATAGTTAGGCTCAC 58.369 37.037 0.00 0.00 0.00 3.51
404 405 7.591795 CAGATAGTGTTTATAGTTAGGCTCACG 59.408 40.741 0.00 0.00 0.00 4.35
405 406 5.656213 AGTGTTTATAGTTAGGCTCACGT 57.344 39.130 0.00 0.00 0.00 4.49
406 407 5.408356 AGTGTTTATAGTTAGGCTCACGTG 58.592 41.667 9.94 9.94 0.00 4.49
407 408 5.047519 AGTGTTTATAGTTAGGCTCACGTGT 60.048 40.000 16.51 0.00 0.00 4.49
408 409 5.636543 GTGTTTATAGTTAGGCTCACGTGTT 59.363 40.000 16.51 2.81 0.00 3.32
409 410 6.808212 GTGTTTATAGTTAGGCTCACGTGTTA 59.192 38.462 16.51 0.00 0.00 2.41
410 411 7.008992 GTGTTTATAGTTAGGCTCACGTGTTAG 59.991 40.741 16.51 7.72 0.00 2.34
411 412 4.650754 ATAGTTAGGCTCACGTGTTAGG 57.349 45.455 16.51 5.89 0.00 2.69
412 413 2.245582 AGTTAGGCTCACGTGTTAGGT 58.754 47.619 16.51 0.55 0.00 3.08
413 414 2.631545 AGTTAGGCTCACGTGTTAGGTT 59.368 45.455 16.51 0.66 0.00 3.50
414 415 2.735134 GTTAGGCTCACGTGTTAGGTTG 59.265 50.000 16.51 0.03 0.00 3.77
415 416 0.602905 AGGCTCACGTGTTAGGTTGC 60.603 55.000 16.51 9.23 0.00 4.17
416 417 0.602905 GGCTCACGTGTTAGGTTGCT 60.603 55.000 16.51 0.00 0.00 3.91
417 418 0.790814 GCTCACGTGTTAGGTTGCTC 59.209 55.000 16.51 0.00 0.00 4.26
418 419 1.872237 GCTCACGTGTTAGGTTGCTCA 60.872 52.381 16.51 0.00 0.00 4.26
419 420 2.688507 CTCACGTGTTAGGTTGCTCAT 58.311 47.619 16.51 0.00 0.00 2.90
420 421 3.845178 CTCACGTGTTAGGTTGCTCATA 58.155 45.455 16.51 0.00 0.00 2.15
421 422 3.845178 TCACGTGTTAGGTTGCTCATAG 58.155 45.455 16.51 0.00 0.00 2.23
422 423 3.257375 TCACGTGTTAGGTTGCTCATAGT 59.743 43.478 16.51 0.00 0.00 2.12
423 424 4.460034 TCACGTGTTAGGTTGCTCATAGTA 59.540 41.667 16.51 0.00 0.00 1.82
424 425 4.798907 CACGTGTTAGGTTGCTCATAGTAG 59.201 45.833 7.58 0.00 0.00 2.57
425 426 4.142227 ACGTGTTAGGTTGCTCATAGTAGG 60.142 45.833 0.00 0.00 0.00 3.18
426 427 4.694339 GTGTTAGGTTGCTCATAGTAGGG 58.306 47.826 0.00 0.00 0.00 3.53
427 428 3.134081 TGTTAGGTTGCTCATAGTAGGGC 59.866 47.826 0.00 0.00 0.00 5.19
428 429 0.753262 AGGTTGCTCATAGTAGGGCG 59.247 55.000 0.00 0.00 0.00 6.13
429 430 0.464452 GGTTGCTCATAGTAGGGCGT 59.536 55.000 0.00 0.00 0.00 5.68
430 431 1.684983 GGTTGCTCATAGTAGGGCGTA 59.315 52.381 0.00 0.00 0.00 4.42
431 432 2.299297 GGTTGCTCATAGTAGGGCGTAT 59.701 50.000 0.00 0.00 0.00 3.06
432 433 3.576648 GTTGCTCATAGTAGGGCGTATC 58.423 50.000 0.00 0.00 0.00 2.24
433 434 2.871453 TGCTCATAGTAGGGCGTATCA 58.129 47.619 0.00 0.00 0.00 2.15
434 435 3.431415 TGCTCATAGTAGGGCGTATCAT 58.569 45.455 0.00 0.00 0.00 2.45
435 436 4.595986 TGCTCATAGTAGGGCGTATCATA 58.404 43.478 0.00 0.00 0.00 2.15
436 437 5.201243 TGCTCATAGTAGGGCGTATCATAT 58.799 41.667 0.00 0.00 0.00 1.78
437 438 6.362248 TGCTCATAGTAGGGCGTATCATATA 58.638 40.000 0.00 0.00 0.00 0.86
438 439 6.262496 TGCTCATAGTAGGGCGTATCATATAC 59.738 42.308 0.00 0.00 0.00 1.47
439 440 6.487331 GCTCATAGTAGGGCGTATCATATACT 59.513 42.308 0.00 0.00 0.00 2.12
440 441 7.660617 GCTCATAGTAGGGCGTATCATATACTA 59.339 40.741 0.00 0.00 32.13 1.82
441 442 9.210329 CTCATAGTAGGGCGTATCATATACTAG 57.790 40.741 0.00 0.00 31.36 2.57
442 443 8.712103 TCATAGTAGGGCGTATCATATACTAGT 58.288 37.037 0.00 0.00 31.36 2.57
443 444 9.993454 CATAGTAGGGCGTATCATATACTAGTA 57.007 37.037 4.77 4.77 31.36 1.82
446 447 8.712103 AGTAGGGCGTATCATATACTAGTATCA 58.288 37.037 18.68 5.25 0.00 2.15
447 448 9.504708 GTAGGGCGTATCATATACTAGTATCAT 57.495 37.037 18.68 11.67 0.00 2.45
448 449 8.397575 AGGGCGTATCATATACTAGTATCATG 57.602 38.462 18.68 17.93 0.00 3.07
449 450 7.040340 AGGGCGTATCATATACTAGTATCATGC 60.040 40.741 18.68 14.76 0.00 4.06
450 451 7.255486 GGGCGTATCATATACTAGTATCATGCA 60.255 40.741 18.68 1.71 0.00 3.96
451 452 7.591795 GGCGTATCATATACTAGTATCATGCAC 59.408 40.741 18.68 16.55 0.00 4.57
452 453 8.129211 GCGTATCATATACTAGTATCATGCACA 58.871 37.037 18.68 0.22 0.00 4.57
463 464 9.920133 ACTAGTATCATGCACATAAGAGTAATG 57.080 33.333 0.00 0.00 0.00 1.90
464 465 9.920133 CTAGTATCATGCACATAAGAGTAATGT 57.080 33.333 0.00 0.00 38.08 2.71
482 483 9.367444 GAGTAATGTATGTATACAATACCTGGC 57.633 37.037 19.26 8.93 44.71 4.85
483 484 9.101325 AGTAATGTATGTATACAATACCTGGCT 57.899 33.333 19.26 0.39 44.71 4.75
484 485 9.367444 GTAATGTATGTATACAATACCTGGCTC 57.633 37.037 10.14 0.55 45.40 4.70
485 486 7.798710 ATGTATGTATACAATACCTGGCTCT 57.201 36.000 10.14 0.00 45.40 4.09
486 487 8.895141 ATGTATGTATACAATACCTGGCTCTA 57.105 34.615 10.14 0.00 45.40 2.43
487 488 8.895141 TGTATGTATACAATACCTGGCTCTAT 57.105 34.615 10.14 0.00 40.08 1.98
488 489 9.984590 TGTATGTATACAATACCTGGCTCTATA 57.015 33.333 10.14 0.00 40.08 1.31
497 498 9.105844 ACAATACCTGGCTCTATAATTCATAGT 57.894 33.333 0.00 0.00 38.26 2.12
527 528 9.918630 ATTTCAGTATCTTTCCATGAAAAACTG 57.081 29.630 2.29 2.29 41.62 3.16
528 529 8.463930 TTCAGTATCTTTCCATGAAAAACTGT 57.536 30.769 7.38 0.00 37.68 3.55
529 530 8.463930 TCAGTATCTTTCCATGAAAAACTGTT 57.536 30.769 7.38 0.00 37.68 3.16
530 531 9.567776 TCAGTATCTTTCCATGAAAAACTGTTA 57.432 29.630 7.38 0.00 37.68 2.41
531 532 9.831737 CAGTATCTTTCCATGAAAAACTGTTAG 57.168 33.333 0.00 0.00 35.08 2.34
532 533 9.574516 AGTATCTTTCCATGAAAAACTGTTAGT 57.425 29.630 0.00 0.00 30.84 2.24
584 585 7.671302 TGAATAATCTGTAGTAGCCCATCTTC 58.329 38.462 0.00 0.00 0.00 2.87
588 589 4.465886 TCTGTAGTAGCCCATCTTCTCTC 58.534 47.826 0.00 0.00 0.00 3.20
591 592 5.211973 TGTAGTAGCCCATCTTCTCTCAAT 58.788 41.667 0.00 0.00 0.00 2.57
603 604 8.343366 CCATCTTCTCTCAATTAATGTCATGTG 58.657 37.037 0.00 0.00 0.00 3.21
605 606 9.848710 ATCTTCTCTCAATTAATGTCATGTGAT 57.151 29.630 0.00 0.00 0.00 3.06
607 608 7.797038 TCTCTCAATTAATGTCATGTGATGG 57.203 36.000 0.00 0.00 0.00 3.51
655 657 6.155827 GCATAAGGTTGCATGACACTAAAAA 58.844 36.000 0.00 0.00 42.31 1.94
666 668 9.116067 TGCATGACACTAAAAATAATAGTACCC 57.884 33.333 0.00 0.00 32.47 3.69
667 669 8.565416 GCATGACACTAAAAATAATAGTACCCC 58.435 37.037 0.00 0.00 32.47 4.95
668 670 9.063615 CATGACACTAAAAATAATAGTACCCCC 57.936 37.037 0.00 0.00 32.47 5.40
670 672 8.838741 TGACACTAAAAATAATAGTACCCCCTT 58.161 33.333 0.00 0.00 32.47 3.95
672 674 7.558807 ACACTAAAAATAATAGTACCCCCTTGC 59.441 37.037 0.00 0.00 32.47 4.01
679 681 0.032017 AGTACCCCCTTGCGAGAGAT 60.032 55.000 1.22 0.00 0.00 2.75
683 691 1.340114 ACCCCCTTGCGAGAGATTTTC 60.340 52.381 1.22 0.00 0.00 2.29
711 719 6.697641 TTAGGGGGCGAGAGATTTTTATAT 57.302 37.500 0.00 0.00 0.00 0.86
714 722 4.938226 GGGGGCGAGAGATTTTTATATGAG 59.062 45.833 0.00 0.00 0.00 2.90
716 724 5.872070 GGGGCGAGAGATTTTTATATGAGAG 59.128 44.000 0.00 0.00 0.00 3.20
757 807 2.422597 CAAAATCGTCAGTGCCCAGTA 58.577 47.619 0.00 0.00 0.00 2.74
813 863 1.377725 CTGACATGCACCCCACCTC 60.378 63.158 0.00 0.00 0.00 3.85
814 864 2.128290 CTGACATGCACCCCACCTCA 62.128 60.000 0.00 0.00 0.00 3.86
815 865 1.675641 GACATGCACCCCACCTCAC 60.676 63.158 0.00 0.00 0.00 3.51
816 866 2.129555 GACATGCACCCCACCTCACT 62.130 60.000 0.00 0.00 0.00 3.41
817 867 0.840288 ACATGCACCCCACCTCACTA 60.840 55.000 0.00 0.00 0.00 2.74
818 868 0.107508 CATGCACCCCACCTCACTAG 60.108 60.000 0.00 0.00 0.00 2.57
908 968 1.039785 CATCGCTCTCCTCCAGACCA 61.040 60.000 0.00 0.00 0.00 4.02
917 977 1.268283 CCTCCAGACCAAGACTCCCC 61.268 65.000 0.00 0.00 0.00 4.81
919 979 1.913762 CCAGACCAAGACTCCCCGT 60.914 63.158 0.00 0.00 0.00 5.28
920 980 1.293498 CAGACCAAGACTCCCCGTG 59.707 63.158 0.00 0.00 0.00 4.94
926 986 2.883828 AAGACTCCCCGTGCCAGTG 61.884 63.158 0.00 0.00 0.00 3.66
954 1016 3.976793 AAACTCTCTACACGTGTCGAA 57.023 42.857 27.16 13.48 0.00 3.71
961 1023 0.108992 TACACGTGTCGAAGCATCCC 60.109 55.000 27.16 0.00 0.00 3.85
1286 1370 9.874205 TTTTCTTCTTGATTTTGTCATTGTTCT 57.126 25.926 0.00 0.00 36.54 3.01
1287 1371 9.874205 TTTCTTCTTGATTTTGTCATTGTTCTT 57.126 25.926 0.00 0.00 36.54 2.52
1290 1374 9.910511 CTTCTTGATTTTGTCATTGTTCTTTTG 57.089 29.630 0.00 0.00 36.54 2.44
1301 1385 6.033831 GTCATTGTTCTTTTGTGTGTGAACAG 59.966 38.462 0.00 0.00 45.88 3.16
1304 1388 5.698832 TGTTCTTTTGTGTGTGAACAGAAG 58.301 37.500 0.00 2.18 42.25 2.85
1312 1396 3.057019 TGTGTGAACAGAAGCGTCATAC 58.943 45.455 1.61 0.00 0.00 2.39
1314 1398 3.057019 TGTGAACAGAAGCGTCATACAC 58.943 45.455 1.61 7.25 0.00 2.90
1361 1449 1.474077 GGCTGGTTAGTTTGGCAGATG 59.526 52.381 0.00 0.00 0.00 2.90
1440 1559 3.655615 ATTGCCATTTCCCCGTTACTA 57.344 42.857 0.00 0.00 0.00 1.82
1453 1572 4.689345 CCCCGTTACTAAGAGAAAACTGTG 59.311 45.833 0.00 0.00 0.00 3.66
1535 1654 5.246307 ACTTGTTCTTGTAGTAATCAGGGC 58.754 41.667 0.00 0.00 0.00 5.19
1537 1656 3.844211 TGTTCTTGTAGTAATCAGGGCCT 59.156 43.478 0.00 0.00 0.00 5.19
1543 1662 7.054124 TCTTGTAGTAATCAGGGCCTAATTTG 58.946 38.462 7.36 0.00 0.00 2.32
1569 1690 5.752650 ACTTGTATAGGGCCTTTAGTTTCC 58.247 41.667 13.45 0.00 0.00 3.13
1768 1889 1.133982 CCGCGATATCCTGATCCTGAG 59.866 57.143 8.23 0.00 0.00 3.35
1769 1890 1.815613 CGCGATATCCTGATCCTGAGT 59.184 52.381 0.00 0.00 0.00 3.41
1770 1891 2.230025 CGCGATATCCTGATCCTGAGTT 59.770 50.000 0.00 0.00 0.00 3.01
1771 1892 3.671971 CGCGATATCCTGATCCTGAGTTC 60.672 52.174 0.00 0.00 0.00 3.01
1772 1893 3.367910 GCGATATCCTGATCCTGAGTTCC 60.368 52.174 0.00 0.00 0.00 3.62
1773 1894 4.085733 CGATATCCTGATCCTGAGTTCCT 58.914 47.826 0.00 0.00 0.00 3.36
1774 1895 4.082300 CGATATCCTGATCCTGAGTTCCTG 60.082 50.000 0.00 0.00 0.00 3.86
1775 1896 2.928036 TCCTGATCCTGAGTTCCTGA 57.072 50.000 0.00 0.00 0.00 3.86
1895 2026 2.920912 ACGAAGACGGCCAGGGAA 60.921 61.111 2.24 0.00 44.46 3.97
1897 2028 1.302192 CGAAGACGGCCAGGGAAAA 60.302 57.895 2.24 0.00 35.72 2.29
1898 2029 1.574702 CGAAGACGGCCAGGGAAAAC 61.575 60.000 2.24 0.00 35.72 2.43
1905 2036 1.377333 GCCAGGGAAAACTCGAGGG 60.377 63.158 18.41 6.55 0.00 4.30
1941 2075 4.933064 CGCCGTGATCCTCCTCGC 62.933 72.222 0.00 0.00 0.00 5.03
2160 2294 4.778415 CGTCCTCGTCGTGCTGGG 62.778 72.222 0.00 0.00 0.00 4.45
2194 2328 4.746309 GGGCTGGCTGGTGCATGA 62.746 66.667 0.00 0.00 41.91 3.07
2195 2329 2.677524 GGCTGGCTGGTGCATGAA 60.678 61.111 0.00 0.00 41.91 2.57
2198 2332 1.246056 GCTGGCTGGTGCATGAAGAA 61.246 55.000 0.00 0.00 41.91 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.375299 GCACTCAAGCTTATTGGTTCGAT 59.625 43.478 0.00 0.00 33.63 3.59
1 2 2.742053 GCACTCAAGCTTATTGGTTCGA 59.258 45.455 0.00 0.00 33.63 3.71
2 3 2.159517 GGCACTCAAGCTTATTGGTTCG 60.160 50.000 0.00 0.00 33.63 3.95
3 4 3.084786 AGGCACTCAAGCTTATTGGTTC 58.915 45.455 0.00 0.00 33.63 3.62
4 5 3.160679 AGGCACTCAAGCTTATTGGTT 57.839 42.857 0.00 0.00 36.75 3.67
5 6 2.887151 AGGCACTCAAGCTTATTGGT 57.113 45.000 0.00 0.00 34.17 3.67
28 29 3.589542 TTGGTGGGGGCCAGGAAG 61.590 66.667 4.39 0.00 40.01 3.46
29 30 3.589542 CTTGGTGGGGGCCAGGAA 61.590 66.667 4.39 0.00 40.01 3.36
30 31 4.608514 TCTTGGTGGGGGCCAGGA 62.609 66.667 4.39 0.00 41.48 3.86
31 32 2.671384 TTTTCTTGGTGGGGGCCAGG 62.671 60.000 4.39 0.00 40.01 4.45
32 33 1.152355 TTTTCTTGGTGGGGGCCAG 60.152 57.895 4.39 0.00 40.01 4.85
33 34 1.152355 CTTTTCTTGGTGGGGGCCA 60.152 57.895 4.39 0.00 36.62 5.36
34 35 1.913262 CCTTTTCTTGGTGGGGGCC 60.913 63.158 0.00 0.00 0.00 5.80
35 36 2.583441 GCCTTTTCTTGGTGGGGGC 61.583 63.158 0.00 0.00 0.00 5.80
36 37 1.156095 AGCCTTTTCTTGGTGGGGG 59.844 57.895 0.00 0.00 0.00 5.40
37 38 0.178964 TCAGCCTTTTCTTGGTGGGG 60.179 55.000 0.00 0.00 0.00 4.96
38 39 0.961753 GTCAGCCTTTTCTTGGTGGG 59.038 55.000 0.00 0.00 0.00 4.61
39 40 1.338020 GTGTCAGCCTTTTCTTGGTGG 59.662 52.381 0.00 0.00 0.00 4.61
40 41 2.023673 TGTGTCAGCCTTTTCTTGGTG 58.976 47.619 0.00 0.00 0.00 4.17
41 42 2.435372 TGTGTCAGCCTTTTCTTGGT 57.565 45.000 0.00 0.00 0.00 3.67
42 43 3.119173 TGTTTGTGTCAGCCTTTTCTTGG 60.119 43.478 0.00 0.00 0.00 3.61
43 44 4.108699 TGTTTGTGTCAGCCTTTTCTTG 57.891 40.909 0.00 0.00 0.00 3.02
44 45 5.343307 AATGTTTGTGTCAGCCTTTTCTT 57.657 34.783 0.00 0.00 0.00 2.52
45 46 5.594317 ACTAATGTTTGTGTCAGCCTTTTCT 59.406 36.000 0.00 0.00 0.00 2.52
46 47 5.831997 ACTAATGTTTGTGTCAGCCTTTTC 58.168 37.500 0.00 0.00 0.00 2.29
47 48 5.359576 TGACTAATGTTTGTGTCAGCCTTTT 59.640 36.000 0.00 0.00 34.94 2.27
48 49 4.887071 TGACTAATGTTTGTGTCAGCCTTT 59.113 37.500 0.00 0.00 34.94 3.11
49 50 4.275936 GTGACTAATGTTTGTGTCAGCCTT 59.724 41.667 0.00 0.00 39.65 4.35
50 51 3.815401 GTGACTAATGTTTGTGTCAGCCT 59.185 43.478 0.00 0.00 39.65 4.58
51 52 3.058224 GGTGACTAATGTTTGTGTCAGCC 60.058 47.826 11.54 5.70 46.06 4.85
52 53 4.147219 GGTGACTAATGTTTGTGTCAGC 57.853 45.455 8.09 8.09 45.86 4.26
53 54 4.574421 TGTGGTGACTAATGTTTGTGTCAG 59.426 41.667 0.00 0.00 39.65 3.51
54 55 4.518249 TGTGGTGACTAATGTTTGTGTCA 58.482 39.130 0.00 0.00 37.14 3.58
55 56 4.574828 ACTGTGGTGACTAATGTTTGTGTC 59.425 41.667 0.00 0.00 0.00 3.67
56 57 4.335315 CACTGTGGTGACTAATGTTTGTGT 59.665 41.667 0.00 0.00 45.61 3.72
57 58 4.261155 CCACTGTGGTGACTAATGTTTGTG 60.261 45.833 18.76 0.00 45.61 3.33
58 59 3.882888 CCACTGTGGTGACTAATGTTTGT 59.117 43.478 18.76 0.00 45.61 2.83
59 60 4.133820 TCCACTGTGGTGACTAATGTTTG 58.866 43.478 25.15 0.00 45.61 2.93
60 61 4.389374 CTCCACTGTGGTGACTAATGTTT 58.611 43.478 25.15 0.00 45.61 2.83
61 62 3.807209 GCTCCACTGTGGTGACTAATGTT 60.807 47.826 27.89 0.00 45.61 2.71
62 63 2.289694 GCTCCACTGTGGTGACTAATGT 60.290 50.000 27.89 0.00 45.61 2.71
63 64 2.289631 TGCTCCACTGTGGTGACTAATG 60.290 50.000 27.89 10.71 45.61 1.90
64 65 1.977854 TGCTCCACTGTGGTGACTAAT 59.022 47.619 27.89 0.00 45.61 1.73
65 66 1.419381 TGCTCCACTGTGGTGACTAA 58.581 50.000 27.89 8.11 45.61 2.24
66 67 1.419381 TTGCTCCACTGTGGTGACTA 58.581 50.000 27.89 15.05 45.61 2.59
67 68 0.546122 TTTGCTCCACTGTGGTGACT 59.454 50.000 27.89 0.00 45.61 3.41
68 69 1.267806 CATTTGCTCCACTGTGGTGAC 59.732 52.381 27.89 19.67 45.61 3.67
69 70 1.608055 CATTTGCTCCACTGTGGTGA 58.392 50.000 27.89 10.20 45.61 4.02
70 71 0.599558 CCATTTGCTCCACTGTGGTG 59.400 55.000 25.15 23.17 39.03 4.17
71 72 0.478072 TCCATTTGCTCCACTGTGGT 59.522 50.000 25.15 3.05 39.03 4.16
72 73 0.883833 GTCCATTTGCTCCACTGTGG 59.116 55.000 20.86 20.86 39.43 4.17
73 74 1.808945 GAGTCCATTTGCTCCACTGTG 59.191 52.381 0.00 0.00 0.00 3.66
74 75 1.421268 TGAGTCCATTTGCTCCACTGT 59.579 47.619 0.00 0.00 0.00 3.55
75 76 2.082231 CTGAGTCCATTTGCTCCACTG 58.918 52.381 0.00 0.00 0.00 3.66
76 77 1.980765 TCTGAGTCCATTTGCTCCACT 59.019 47.619 0.00 0.00 0.00 4.00
77 78 2.479566 TCTGAGTCCATTTGCTCCAC 57.520 50.000 0.00 0.00 0.00 4.02
78 79 2.573009 TCATCTGAGTCCATTTGCTCCA 59.427 45.455 0.00 0.00 0.00 3.86
79 80 3.272574 TCATCTGAGTCCATTTGCTCC 57.727 47.619 0.00 0.00 0.00 4.70
80 81 3.626670 CCTTCATCTGAGTCCATTTGCTC 59.373 47.826 0.00 0.00 0.00 4.26
81 82 3.618351 CCTTCATCTGAGTCCATTTGCT 58.382 45.455 0.00 0.00 0.00 3.91
82 83 2.686915 CCCTTCATCTGAGTCCATTTGC 59.313 50.000 0.00 0.00 0.00 3.68
83 84 2.686915 GCCCTTCATCTGAGTCCATTTG 59.313 50.000 0.00 0.00 0.00 2.32
84 85 2.309755 TGCCCTTCATCTGAGTCCATTT 59.690 45.455 0.00 0.00 0.00 2.32
85 86 1.918262 TGCCCTTCATCTGAGTCCATT 59.082 47.619 0.00 0.00 0.00 3.16
86 87 1.588239 TGCCCTTCATCTGAGTCCAT 58.412 50.000 0.00 0.00 0.00 3.41
87 88 1.361204 TTGCCCTTCATCTGAGTCCA 58.639 50.000 0.00 0.00 0.00 4.02
88 89 2.725221 ATTGCCCTTCATCTGAGTCC 57.275 50.000 0.00 0.00 0.00 3.85
89 90 4.414337 ACTATTGCCCTTCATCTGAGTC 57.586 45.455 0.00 0.00 0.00 3.36
90 91 4.472833 AGAACTATTGCCCTTCATCTGAGT 59.527 41.667 0.00 0.00 0.00 3.41
91 92 5.033589 AGAACTATTGCCCTTCATCTGAG 57.966 43.478 0.00 0.00 0.00 3.35
92 93 5.441718 AAGAACTATTGCCCTTCATCTGA 57.558 39.130 0.00 0.00 0.00 3.27
93 94 6.521151 AAAAGAACTATTGCCCTTCATCTG 57.479 37.500 0.00 0.00 0.00 2.90
94 95 8.829373 AATAAAAGAACTATTGCCCTTCATCT 57.171 30.769 0.00 0.00 0.00 2.90
95 96 8.686334 TGAATAAAAGAACTATTGCCCTTCATC 58.314 33.333 0.00 0.00 0.00 2.92
96 97 8.593945 TGAATAAAAGAACTATTGCCCTTCAT 57.406 30.769 0.00 0.00 0.00 2.57
97 98 8.415950 TTGAATAAAAGAACTATTGCCCTTCA 57.584 30.769 0.00 0.00 0.00 3.02
98 99 9.875691 ATTTGAATAAAAGAACTATTGCCCTTC 57.124 29.630 0.00 0.00 0.00 3.46
100 101 9.657419 CAATTTGAATAAAAGAACTATTGCCCT 57.343 29.630 0.00 0.00 0.00 5.19
101 102 8.882736 CCAATTTGAATAAAAGAACTATTGCCC 58.117 33.333 0.00 0.00 0.00 5.36
102 103 9.435688 ACCAATTTGAATAAAAGAACTATTGCC 57.564 29.630 0.00 0.00 0.00 4.52
108 109 9.914131 GCTCTAACCAATTTGAATAAAAGAACT 57.086 29.630 0.00 0.00 0.00 3.01
109 110 9.691362 TGCTCTAACCAATTTGAATAAAAGAAC 57.309 29.630 0.00 0.00 0.00 3.01
113 114 9.434420 CCATTGCTCTAACCAATTTGAATAAAA 57.566 29.630 0.00 0.00 30.90 1.52
114 115 7.548780 GCCATTGCTCTAACCAATTTGAATAAA 59.451 33.333 0.00 0.00 30.90 1.40
115 116 7.041107 GCCATTGCTCTAACCAATTTGAATAA 58.959 34.615 0.00 0.00 30.90 1.40
116 117 6.572519 GCCATTGCTCTAACCAATTTGAATA 58.427 36.000 0.00 0.00 30.90 1.75
117 118 5.422145 GCCATTGCTCTAACCAATTTGAAT 58.578 37.500 0.00 0.00 30.90 2.57
118 119 4.617995 CGCCATTGCTCTAACCAATTTGAA 60.618 41.667 0.00 0.00 30.90 2.69
119 120 3.119531 CGCCATTGCTCTAACCAATTTGA 60.120 43.478 0.00 0.00 30.90 2.69
120 121 3.119531 TCGCCATTGCTCTAACCAATTTG 60.120 43.478 0.00 0.00 30.90 2.32
121 122 3.088532 TCGCCATTGCTCTAACCAATTT 58.911 40.909 0.00 0.00 30.90 1.82
122 123 2.722094 TCGCCATTGCTCTAACCAATT 58.278 42.857 0.00 0.00 30.90 2.32
123 124 2.418368 TCGCCATTGCTCTAACCAAT 57.582 45.000 0.00 0.00 33.41 3.16
124 125 2.083774 CTTCGCCATTGCTCTAACCAA 58.916 47.619 0.00 0.00 34.43 3.67
125 126 1.737838 CTTCGCCATTGCTCTAACCA 58.262 50.000 0.00 0.00 34.43 3.67
126 127 0.378610 GCTTCGCCATTGCTCTAACC 59.621 55.000 0.00 0.00 34.43 2.85
127 128 1.373570 AGCTTCGCCATTGCTCTAAC 58.626 50.000 0.00 0.00 34.43 2.34
128 129 1.739466 CAAGCTTCGCCATTGCTCTAA 59.261 47.619 0.00 0.00 35.85 2.10
129 130 1.372582 CAAGCTTCGCCATTGCTCTA 58.627 50.000 0.00 0.00 35.85 2.43
130 131 1.930908 GCAAGCTTCGCCATTGCTCT 61.931 55.000 0.00 0.00 44.57 4.09
131 132 1.515736 GCAAGCTTCGCCATTGCTC 60.516 57.895 0.00 0.00 44.57 4.26
132 133 2.570181 GCAAGCTTCGCCATTGCT 59.430 55.556 0.00 0.00 44.57 3.91
134 135 1.444895 GGTGCAAGCTTCGCCATTG 60.445 57.895 18.05 0.13 34.38 2.82
135 136 1.462731 TTGGTGCAAGCTTCGCCATT 61.463 50.000 23.09 0.00 42.90 3.16
136 137 1.462731 TTTGGTGCAAGCTTCGCCAT 61.463 50.000 23.09 0.00 42.90 4.40
137 138 1.670949 TTTTGGTGCAAGCTTCGCCA 61.671 50.000 20.38 20.38 41.85 5.69
138 139 0.529555 TTTTTGGTGCAAGCTTCGCC 60.530 50.000 16.81 16.81 33.76 5.54
139 140 0.854705 CTTTTTGGTGCAAGCTTCGC 59.145 50.000 12.25 12.25 33.76 4.70
140 141 0.854705 GCTTTTTGGTGCAAGCTTCG 59.145 50.000 0.00 0.00 41.93 3.79
144 145 0.881600 CCCAGCTTTTTGGTGCAAGC 60.882 55.000 0.00 0.00 44.96 4.01
145 146 0.881600 GCCCAGCTTTTTGGTGCAAG 60.882 55.000 0.00 0.00 42.38 4.01
146 147 1.145819 GCCCAGCTTTTTGGTGCAA 59.854 52.632 0.00 0.00 42.38 4.08
147 148 2.820973 GCCCAGCTTTTTGGTGCA 59.179 55.556 0.00 0.00 42.38 4.57
148 149 2.356194 CGCCCAGCTTTTTGGTGC 60.356 61.111 0.00 0.00 42.38 5.01
149 150 2.339712 CCGCCCAGCTTTTTGGTG 59.660 61.111 0.00 0.00 43.27 4.17
150 151 2.917227 CCCGCCCAGCTTTTTGGT 60.917 61.111 0.00 0.00 36.45 3.67
151 152 4.377708 GCCCGCCCAGCTTTTTGG 62.378 66.667 0.00 0.00 38.00 3.28
152 153 4.377708 GGCCCGCCCAGCTTTTTG 62.378 66.667 0.00 0.00 0.00 2.44
162 163 4.868116 TCTTATTGCCGGCCCGCC 62.868 66.667 26.77 0.00 0.00 6.13
163 164 3.279875 CTCTTATTGCCGGCCCGC 61.280 66.667 26.77 9.36 0.00 6.13
164 165 0.535102 AATCTCTTATTGCCGGCCCG 60.535 55.000 26.77 7.61 0.00 6.13
165 166 0.954452 CAATCTCTTATTGCCGGCCC 59.046 55.000 26.77 0.00 0.00 5.80
166 167 1.680338 ACAATCTCTTATTGCCGGCC 58.320 50.000 26.77 6.44 32.55 6.13
167 168 3.877508 AGTAACAATCTCTTATTGCCGGC 59.122 43.478 22.73 22.73 32.55 6.13
168 169 5.177696 GCTAGTAACAATCTCTTATTGCCGG 59.822 44.000 0.00 0.00 32.55 6.13
169 170 5.986135 AGCTAGTAACAATCTCTTATTGCCG 59.014 40.000 0.00 0.00 32.55 5.69
170 171 8.145122 ACTAGCTAGTAACAATCTCTTATTGCC 58.855 37.037 24.97 0.00 34.13 4.52
187 188 9.148879 ACCATGAGTCATAAAATACTAGCTAGT 57.851 33.333 28.50 28.50 40.24 2.57
188 189 9.632807 GACCATGAGTCATAAAATACTAGCTAG 57.367 37.037 19.44 19.44 45.55 3.42
204 205 4.453819 GCATTTATAGCCAGACCATGAGTC 59.546 45.833 0.00 0.00 46.71 3.36
205 206 4.392940 GCATTTATAGCCAGACCATGAGT 58.607 43.478 0.00 0.00 0.00 3.41
206 207 3.434641 CGCATTTATAGCCAGACCATGAG 59.565 47.826 0.00 0.00 0.00 2.90
207 208 3.070878 TCGCATTTATAGCCAGACCATGA 59.929 43.478 0.00 0.00 0.00 3.07
208 209 3.402110 TCGCATTTATAGCCAGACCATG 58.598 45.455 0.00 0.00 0.00 3.66
209 210 3.557898 CCTCGCATTTATAGCCAGACCAT 60.558 47.826 0.00 0.00 0.00 3.55
210 211 2.224281 CCTCGCATTTATAGCCAGACCA 60.224 50.000 0.00 0.00 0.00 4.02
211 212 2.037251 TCCTCGCATTTATAGCCAGACC 59.963 50.000 0.00 0.00 0.00 3.85
212 213 3.321497 CTCCTCGCATTTATAGCCAGAC 58.679 50.000 0.00 0.00 0.00 3.51
213 214 2.300152 CCTCCTCGCATTTATAGCCAGA 59.700 50.000 0.00 0.00 0.00 3.86
214 215 2.300152 TCCTCCTCGCATTTATAGCCAG 59.700 50.000 0.00 0.00 0.00 4.85
215 216 2.300152 CTCCTCCTCGCATTTATAGCCA 59.700 50.000 0.00 0.00 0.00 4.75
216 217 2.933056 GCTCCTCCTCGCATTTATAGCC 60.933 54.545 0.00 0.00 0.00 3.93
217 218 2.028567 AGCTCCTCCTCGCATTTATAGC 60.029 50.000 0.00 0.00 0.00 2.97
218 219 3.367910 GGAGCTCCTCCTCGCATTTATAG 60.368 52.174 26.25 0.00 46.41 1.31
219 220 2.563179 GGAGCTCCTCCTCGCATTTATA 59.437 50.000 26.25 0.00 46.41 0.98
220 221 1.346068 GGAGCTCCTCCTCGCATTTAT 59.654 52.381 26.25 0.00 46.41 1.40
221 222 0.753262 GGAGCTCCTCCTCGCATTTA 59.247 55.000 26.25 0.00 46.41 1.40
222 223 1.524482 GGAGCTCCTCCTCGCATTT 59.476 57.895 26.25 0.00 46.41 2.32
223 224 3.225235 GGAGCTCCTCCTCGCATT 58.775 61.111 26.25 0.00 46.41 3.56
237 238 0.972134 TGTCCTGCTCAGTTCTGGAG 59.028 55.000 0.00 0.00 33.17 3.86
238 239 1.277273 CATGTCCTGCTCAGTTCTGGA 59.723 52.381 0.00 0.00 0.00 3.86
239 240 1.678123 CCATGTCCTGCTCAGTTCTGG 60.678 57.143 0.00 0.00 0.00 3.86
240 241 1.735386 CCATGTCCTGCTCAGTTCTG 58.265 55.000 0.00 0.00 0.00 3.02
241 242 0.035630 GCCATGTCCTGCTCAGTTCT 60.036 55.000 0.00 0.00 0.00 3.01
242 243 0.035630 AGCCATGTCCTGCTCAGTTC 60.036 55.000 0.00 0.00 30.33 3.01
243 244 2.073232 AGCCATGTCCTGCTCAGTT 58.927 52.632 0.00 0.00 30.33 3.16
244 245 3.817508 AGCCATGTCCTGCTCAGT 58.182 55.556 0.00 0.00 30.33 3.41
248 249 0.463295 CGAATGAGCCATGTCCTGCT 60.463 55.000 0.00 0.00 41.42 4.24
249 250 1.442526 CCGAATGAGCCATGTCCTGC 61.443 60.000 0.00 0.00 0.00 4.85
250 251 1.442526 GCCGAATGAGCCATGTCCTG 61.443 60.000 0.00 0.00 0.00 3.86
251 252 1.153086 GCCGAATGAGCCATGTCCT 60.153 57.895 0.00 0.00 0.00 3.85
252 253 3.425422 GCCGAATGAGCCATGTCC 58.575 61.111 0.00 0.00 0.00 4.02
280 281 3.612247 CTCCAACCCACTGGCGGAG 62.612 68.421 0.00 10.48 44.14 4.63
281 282 3.636231 CTCCAACCCACTGGCGGA 61.636 66.667 0.00 0.00 36.32 5.54
282 283 4.722700 CCTCCAACCCACTGGCGG 62.723 72.222 0.00 0.00 35.06 6.13
283 284 3.953775 ACCTCCAACCCACTGGCG 61.954 66.667 0.00 0.00 36.32 5.69
284 285 2.282462 CACCTCCAACCCACTGGC 60.282 66.667 0.00 0.00 36.32 4.85
285 286 2.436109 CCACCTCCAACCCACTGG 59.564 66.667 0.00 0.00 37.87 4.00
286 287 2.436109 CCCACCTCCAACCCACTG 59.564 66.667 0.00 0.00 0.00 3.66
287 288 3.580319 GCCCACCTCCAACCCACT 61.580 66.667 0.00 0.00 0.00 4.00
288 289 2.937959 TTTGCCCACCTCCAACCCAC 62.938 60.000 0.00 0.00 0.00 4.61
289 290 2.029892 ATTTGCCCACCTCCAACCCA 62.030 55.000 0.00 0.00 0.00 4.51
290 291 0.040499 TATTTGCCCACCTCCAACCC 59.960 55.000 0.00 0.00 0.00 4.11
291 292 1.548719 GTTATTTGCCCACCTCCAACC 59.451 52.381 0.00 0.00 0.00 3.77
292 293 1.548719 GGTTATTTGCCCACCTCCAAC 59.451 52.381 0.00 0.00 0.00 3.77
293 294 1.148027 TGGTTATTTGCCCACCTCCAA 59.852 47.619 0.00 0.00 0.00 3.53
294 295 0.780637 TGGTTATTTGCCCACCTCCA 59.219 50.000 0.00 0.00 0.00 3.86
295 296 1.548719 GTTGGTTATTTGCCCACCTCC 59.451 52.381 0.00 0.00 0.00 4.30
296 297 2.243810 TGTTGGTTATTTGCCCACCTC 58.756 47.619 0.00 0.00 0.00 3.85
297 298 2.367241 GTTGTTGGTTATTTGCCCACCT 59.633 45.455 0.00 0.00 0.00 4.00
298 299 2.103263 TGTTGTTGGTTATTTGCCCACC 59.897 45.455 0.00 0.00 0.00 4.61
299 300 3.460857 TGTTGTTGGTTATTTGCCCAC 57.539 42.857 0.00 0.00 0.00 4.61
300 301 3.643320 TGATGTTGTTGGTTATTTGCCCA 59.357 39.130 0.00 0.00 0.00 5.36
301 302 3.993736 GTGATGTTGTTGGTTATTTGCCC 59.006 43.478 0.00 0.00 0.00 5.36
302 303 3.672867 CGTGATGTTGTTGGTTATTTGCC 59.327 43.478 0.00 0.00 0.00 4.52
303 304 4.295051 ACGTGATGTTGTTGGTTATTTGC 58.705 39.130 0.00 0.00 0.00 3.68
304 305 5.567534 GCTACGTGATGTTGTTGGTTATTTG 59.432 40.000 0.00 0.00 0.00 2.32
305 306 5.239744 TGCTACGTGATGTTGTTGGTTATTT 59.760 36.000 0.00 0.00 0.00 1.40
306 307 4.757657 TGCTACGTGATGTTGTTGGTTATT 59.242 37.500 0.00 0.00 0.00 1.40
307 308 4.320023 TGCTACGTGATGTTGTTGGTTAT 58.680 39.130 0.00 0.00 0.00 1.89
308 309 3.729966 TGCTACGTGATGTTGTTGGTTA 58.270 40.909 0.00 0.00 0.00 2.85
309 310 2.566913 TGCTACGTGATGTTGTTGGTT 58.433 42.857 0.00 0.00 0.00 3.67
310 311 2.248280 TGCTACGTGATGTTGTTGGT 57.752 45.000 0.00 0.00 0.00 3.67
311 312 3.003275 ACTTTGCTACGTGATGTTGTTGG 59.997 43.478 0.00 0.00 0.00 3.77
312 313 4.209452 ACTTTGCTACGTGATGTTGTTG 57.791 40.909 0.00 0.00 0.00 3.33
313 314 3.059868 CGACTTTGCTACGTGATGTTGTT 60.060 43.478 0.00 0.00 0.00 2.83
314 315 2.475111 CGACTTTGCTACGTGATGTTGT 59.525 45.455 0.00 0.00 0.00 3.32
315 316 2.729360 TCGACTTTGCTACGTGATGTTG 59.271 45.455 0.00 0.00 0.00 3.33
316 317 3.021269 TCGACTTTGCTACGTGATGTT 57.979 42.857 0.00 0.00 0.00 2.71
317 318 2.717580 TCGACTTTGCTACGTGATGT 57.282 45.000 0.00 0.00 0.00 3.06
318 319 5.288712 ACTTATTCGACTTTGCTACGTGATG 59.711 40.000 0.00 0.00 0.00 3.07
319 320 5.408356 ACTTATTCGACTTTGCTACGTGAT 58.592 37.500 0.00 0.00 0.00 3.06
320 321 4.801891 ACTTATTCGACTTTGCTACGTGA 58.198 39.130 0.00 0.00 0.00 4.35
321 322 5.511088 AACTTATTCGACTTTGCTACGTG 57.489 39.130 0.00 0.00 0.00 4.49
322 323 5.924825 AGAAACTTATTCGACTTTGCTACGT 59.075 36.000 0.00 0.00 0.00 3.57
323 324 6.308282 AGAGAAACTTATTCGACTTTGCTACG 59.692 38.462 0.00 0.00 0.00 3.51
324 325 7.583860 AGAGAAACTTATTCGACTTTGCTAC 57.416 36.000 0.00 0.00 0.00 3.58
325 326 8.737175 TCTAGAGAAACTTATTCGACTTTGCTA 58.263 33.333 0.00 0.00 0.00 3.49
326 327 7.603651 TCTAGAGAAACTTATTCGACTTTGCT 58.396 34.615 0.00 0.00 0.00 3.91
327 328 7.813852 TCTAGAGAAACTTATTCGACTTTGC 57.186 36.000 0.00 0.00 0.00 3.68
328 329 9.574458 TGATCTAGAGAAACTTATTCGACTTTG 57.426 33.333 0.00 0.00 0.00 2.77
329 330 9.796120 CTGATCTAGAGAAACTTATTCGACTTT 57.204 33.333 0.00 0.00 0.00 2.66
330 331 9.179909 TCTGATCTAGAGAAACTTATTCGACTT 57.820 33.333 0.00 0.00 0.00 3.01
331 332 8.617809 GTCTGATCTAGAGAAACTTATTCGACT 58.382 37.037 0.00 0.00 35.70 4.18
332 333 8.399425 TGTCTGATCTAGAGAAACTTATTCGAC 58.601 37.037 0.00 1.57 35.70 4.20
333 334 8.507524 TGTCTGATCTAGAGAAACTTATTCGA 57.492 34.615 0.00 0.00 35.70 3.71
334 335 7.860373 CCTGTCTGATCTAGAGAAACTTATTCG 59.140 40.741 0.00 0.00 35.70 3.34
335 336 8.141268 CCCTGTCTGATCTAGAGAAACTTATTC 58.859 40.741 0.00 0.00 35.70 1.75
336 337 7.621683 ACCCTGTCTGATCTAGAGAAACTTATT 59.378 37.037 0.00 0.00 35.70 1.40
337 338 7.129425 ACCCTGTCTGATCTAGAGAAACTTAT 58.871 38.462 0.00 0.00 35.70 1.73
338 339 6.494952 ACCCTGTCTGATCTAGAGAAACTTA 58.505 40.000 0.00 0.00 35.70 2.24
339 340 5.337788 ACCCTGTCTGATCTAGAGAAACTT 58.662 41.667 0.00 0.00 35.70 2.66
340 341 4.941713 ACCCTGTCTGATCTAGAGAAACT 58.058 43.478 0.00 0.00 35.70 2.66
341 342 5.669164 AACCCTGTCTGATCTAGAGAAAC 57.331 43.478 0.00 0.00 35.70 2.78
342 343 5.046304 CCAAACCCTGTCTGATCTAGAGAAA 60.046 44.000 0.00 0.00 35.70 2.52
343 344 4.467795 CCAAACCCTGTCTGATCTAGAGAA 59.532 45.833 0.00 0.00 35.70 2.87
344 345 4.026744 CCAAACCCTGTCTGATCTAGAGA 58.973 47.826 0.00 0.00 35.70 3.10
345 346 3.133721 CCCAAACCCTGTCTGATCTAGAG 59.866 52.174 0.00 0.00 35.70 2.43
346 347 3.107601 CCCAAACCCTGTCTGATCTAGA 58.892 50.000 0.00 0.00 0.00 2.43
347 348 2.171448 CCCCAAACCCTGTCTGATCTAG 59.829 54.545 0.00 0.00 0.00 2.43
348 349 2.196595 CCCCAAACCCTGTCTGATCTA 58.803 52.381 0.00 0.00 0.00 1.98
349 350 0.995024 CCCCAAACCCTGTCTGATCT 59.005 55.000 0.00 0.00 0.00 2.75
350 351 0.681243 GCCCCAAACCCTGTCTGATC 60.681 60.000 0.00 0.00 0.00 2.92
351 352 1.384191 GCCCCAAACCCTGTCTGAT 59.616 57.895 0.00 0.00 0.00 2.90
352 353 2.840753 GGCCCCAAACCCTGTCTGA 61.841 63.158 0.00 0.00 0.00 3.27
353 354 2.283173 GGCCCCAAACCCTGTCTG 60.283 66.667 0.00 0.00 0.00 3.51
354 355 2.452491 AGGCCCCAAACCCTGTCT 60.452 61.111 0.00 0.00 0.00 3.41
355 356 2.283173 CAGGCCCCAAACCCTGTC 60.283 66.667 0.00 0.00 42.87 3.51
356 357 3.914713 CCAGGCCCCAAACCCTGT 61.915 66.667 0.00 0.00 45.68 4.00
357 358 2.087857 TAACCAGGCCCCAAACCCTG 62.088 60.000 0.00 0.00 46.49 4.45
358 359 1.153041 ATAACCAGGCCCCAAACCCT 61.153 55.000 0.00 0.00 0.00 4.34
359 360 0.686441 GATAACCAGGCCCCAAACCC 60.686 60.000 0.00 0.00 0.00 4.11
360 361 0.040499 TGATAACCAGGCCCCAAACC 59.960 55.000 0.00 0.00 0.00 3.27
361 362 1.005450 TCTGATAACCAGGCCCCAAAC 59.995 52.381 0.00 0.00 43.12 2.93
362 363 1.377690 TCTGATAACCAGGCCCCAAA 58.622 50.000 0.00 0.00 43.12 3.28
363 364 1.607225 ATCTGATAACCAGGCCCCAA 58.393 50.000 0.00 0.00 43.12 4.12
364 365 2.338809 CTATCTGATAACCAGGCCCCA 58.661 52.381 0.00 0.00 43.12 4.96
365 366 2.039084 CACTATCTGATAACCAGGCCCC 59.961 54.545 0.00 0.00 43.12 5.80
366 367 2.706190 ACACTATCTGATAACCAGGCCC 59.294 50.000 0.00 0.00 43.12 5.80
367 368 4.423625 AACACTATCTGATAACCAGGCC 57.576 45.455 0.00 0.00 43.12 5.19
368 369 8.368668 ACTATAAACACTATCTGATAACCAGGC 58.631 37.037 0.00 0.00 43.12 4.85
376 377 9.368416 TGAGCCTAACTATAAACACTATCTGAT 57.632 33.333 0.00 0.00 0.00 2.90
377 378 8.630917 GTGAGCCTAACTATAAACACTATCTGA 58.369 37.037 0.00 0.00 0.00 3.27
378 379 7.591795 CGTGAGCCTAACTATAAACACTATCTG 59.408 40.741 0.00 0.00 0.00 2.90
379 380 7.284944 ACGTGAGCCTAACTATAAACACTATCT 59.715 37.037 0.00 0.00 0.00 1.98
380 381 7.378995 CACGTGAGCCTAACTATAAACACTATC 59.621 40.741 10.90 0.00 0.00 2.08
381 382 7.147949 ACACGTGAGCCTAACTATAAACACTAT 60.148 37.037 25.01 0.00 0.00 2.12
382 383 6.151648 ACACGTGAGCCTAACTATAAACACTA 59.848 38.462 25.01 0.00 0.00 2.74
383 384 5.047519 ACACGTGAGCCTAACTATAAACACT 60.048 40.000 25.01 0.00 0.00 3.55
384 385 5.166398 ACACGTGAGCCTAACTATAAACAC 58.834 41.667 25.01 0.00 0.00 3.32
385 386 5.395682 ACACGTGAGCCTAACTATAAACA 57.604 39.130 25.01 0.00 0.00 2.83
386 387 6.474751 CCTAACACGTGAGCCTAACTATAAAC 59.525 42.308 25.01 0.00 0.00 2.01
387 388 6.153340 ACCTAACACGTGAGCCTAACTATAAA 59.847 38.462 25.01 0.00 0.00 1.40
388 389 5.653769 ACCTAACACGTGAGCCTAACTATAA 59.346 40.000 25.01 0.00 0.00 0.98
389 390 5.195940 ACCTAACACGTGAGCCTAACTATA 58.804 41.667 25.01 0.00 0.00 1.31
390 391 4.021916 ACCTAACACGTGAGCCTAACTAT 58.978 43.478 25.01 0.00 0.00 2.12
391 392 3.424703 ACCTAACACGTGAGCCTAACTA 58.575 45.455 25.01 0.00 0.00 2.24
392 393 2.245582 ACCTAACACGTGAGCCTAACT 58.754 47.619 25.01 0.00 0.00 2.24
393 394 2.735134 CAACCTAACACGTGAGCCTAAC 59.265 50.000 25.01 0.00 0.00 2.34
394 395 2.868839 GCAACCTAACACGTGAGCCTAA 60.869 50.000 25.01 0.00 0.00 2.69
395 396 1.337447 GCAACCTAACACGTGAGCCTA 60.337 52.381 25.01 6.88 0.00 3.93
396 397 0.602905 GCAACCTAACACGTGAGCCT 60.603 55.000 25.01 6.01 0.00 4.58
397 398 0.602905 AGCAACCTAACACGTGAGCC 60.603 55.000 25.01 1.35 0.00 4.70
398 399 0.790814 GAGCAACCTAACACGTGAGC 59.209 55.000 25.01 13.20 0.00 4.26
399 400 2.148916 TGAGCAACCTAACACGTGAG 57.851 50.000 25.01 10.14 0.00 3.51
400 401 2.831685 ATGAGCAACCTAACACGTGA 57.168 45.000 25.01 0.00 0.00 4.35
401 402 3.585862 ACTATGAGCAACCTAACACGTG 58.414 45.455 15.48 15.48 0.00 4.49
402 403 3.955650 ACTATGAGCAACCTAACACGT 57.044 42.857 0.00 0.00 0.00 4.49
403 404 4.360563 CCTACTATGAGCAACCTAACACG 58.639 47.826 0.00 0.00 0.00 4.49
404 405 4.694339 CCCTACTATGAGCAACCTAACAC 58.306 47.826 0.00 0.00 0.00 3.32
405 406 3.134081 GCCCTACTATGAGCAACCTAACA 59.866 47.826 0.00 0.00 0.00 2.41
406 407 3.729966 GCCCTACTATGAGCAACCTAAC 58.270 50.000 0.00 0.00 0.00 2.34
407 408 2.364324 CGCCCTACTATGAGCAACCTAA 59.636 50.000 0.00 0.00 0.00 2.69
408 409 1.961394 CGCCCTACTATGAGCAACCTA 59.039 52.381 0.00 0.00 0.00 3.08
409 410 0.753262 CGCCCTACTATGAGCAACCT 59.247 55.000 0.00 0.00 0.00 3.50
410 411 0.464452 ACGCCCTACTATGAGCAACC 59.536 55.000 0.00 0.00 0.00 3.77
411 412 3.005472 TGATACGCCCTACTATGAGCAAC 59.995 47.826 0.00 0.00 0.00 4.17
412 413 3.227614 TGATACGCCCTACTATGAGCAA 58.772 45.455 0.00 0.00 0.00 3.91
413 414 2.871453 TGATACGCCCTACTATGAGCA 58.129 47.619 0.00 0.00 0.00 4.26
414 415 5.776173 ATATGATACGCCCTACTATGAGC 57.224 43.478 0.00 0.00 0.00 4.26
415 416 9.210329 CTAGTATATGATACGCCCTACTATGAG 57.790 40.741 0.00 0.00 0.00 2.90
416 417 8.712103 ACTAGTATATGATACGCCCTACTATGA 58.288 37.037 0.00 0.00 0.00 2.15
417 418 8.905660 ACTAGTATATGATACGCCCTACTATG 57.094 38.462 0.00 0.00 0.00 2.23
420 421 8.712103 TGATACTAGTATATGATACGCCCTACT 58.288 37.037 15.42 0.00 0.00 2.57
421 422 8.899427 TGATACTAGTATATGATACGCCCTAC 57.101 38.462 15.42 0.00 0.00 3.18
422 423 9.503399 CATGATACTAGTATATGATACGCCCTA 57.497 37.037 15.42 0.00 0.00 3.53
423 424 7.040340 GCATGATACTAGTATATGATACGCCCT 60.040 40.741 22.89 1.61 0.00 5.19
424 425 7.085116 GCATGATACTAGTATATGATACGCCC 58.915 42.308 22.89 9.00 0.00 6.13
425 426 7.591795 GTGCATGATACTAGTATATGATACGCC 59.408 40.741 22.89 9.51 0.00 5.68
426 427 8.129211 TGTGCATGATACTAGTATATGATACGC 58.871 37.037 22.89 16.27 0.00 4.42
437 438 9.920133 CATTACTCTTATGTGCATGATACTAGT 57.080 33.333 0.00 0.00 0.00 2.57
438 439 9.920133 ACATTACTCTTATGTGCATGATACTAG 57.080 33.333 0.00 0.00 35.03 2.57
456 457 9.367444 GCCAGGTATTGTATACATACATTACTC 57.633 37.037 21.81 16.06 43.13 2.59
457 458 9.101325 AGCCAGGTATTGTATACATACATTACT 57.899 33.333 21.81 6.24 43.13 2.24
458 459 9.367444 GAGCCAGGTATTGTATACATACATTAC 57.633 37.037 17.94 17.94 42.99 1.89
459 460 9.321532 AGAGCCAGGTATTGTATACATACATTA 57.678 33.333 6.36 2.24 42.32 1.90
460 461 8.207350 AGAGCCAGGTATTGTATACATACATT 57.793 34.615 6.36 3.10 42.32 2.71
461 462 7.798710 AGAGCCAGGTATTGTATACATACAT 57.201 36.000 6.36 6.60 42.32 2.29
462 463 8.895141 ATAGAGCCAGGTATTGTATACATACA 57.105 34.615 6.36 0.00 41.19 2.29
471 472 9.105844 ACTATGAATTATAGAGCCAGGTATTGT 57.894 33.333 0.00 0.00 41.10 2.71
501 502 9.918630 CAGTTTTTCATGGAAAGATACTGAAAT 57.081 29.630 19.01 0.00 38.27 2.17
502 503 8.912988 ACAGTTTTTCATGGAAAGATACTGAAA 58.087 29.630 26.17 2.03 38.27 2.69
503 504 8.463930 ACAGTTTTTCATGGAAAGATACTGAA 57.536 30.769 26.17 0.00 38.27 3.02
504 505 8.463930 AACAGTTTTTCATGGAAAGATACTGA 57.536 30.769 26.17 0.00 38.27 3.41
505 506 9.831737 CTAACAGTTTTTCATGGAAAGATACTG 57.168 33.333 20.94 20.94 39.78 2.74
506 507 9.574516 ACTAACAGTTTTTCATGGAAAGATACT 57.425 29.630 0.00 0.00 32.93 2.12
569 570 5.799827 ATTGAGAGAAGATGGGCTACTAC 57.200 43.478 0.00 0.00 0.00 2.73
572 573 6.995091 ACATTAATTGAGAGAAGATGGGCTAC 59.005 38.462 0.00 0.00 0.00 3.58
584 585 7.563888 ACCATCACATGACATTAATTGAGAG 57.436 36.000 0.00 0.00 0.00 3.20
588 589 9.806203 AATGTTACCATCACATGACATTAATTG 57.194 29.630 0.00 0.00 35.06 2.32
591 592 8.608317 CGTAATGTTACCATCACATGACATTAA 58.392 33.333 11.66 0.00 38.28 1.40
603 604 6.128227 TGGCAACTAAACGTAATGTTACCATC 60.128 38.462 12.48 0.21 37.35 3.51
605 606 5.061853 TGGCAACTAAACGTAATGTTACCA 58.938 37.500 12.48 12.48 37.35 3.25
607 608 6.033091 GCAATGGCAACTAAACGTAATGTTAC 59.967 38.462 0.00 0.00 39.03 2.50
650 652 6.897986 TCGCAAGGGGGTACTATTATTTTTA 58.102 36.000 0.00 0.00 38.47 1.52
651 653 5.757988 TCGCAAGGGGGTACTATTATTTTT 58.242 37.500 0.00 0.00 38.47 1.94
655 657 3.833070 CTCTCGCAAGGGGGTACTATTAT 59.167 47.826 0.00 0.00 39.46 1.28
666 668 4.773323 AAAAGAAAATCTCTCGCAAGGG 57.227 40.909 0.00 0.00 41.48 3.95
689 697 5.783360 TCATATAAAAATCTCTCGCCCCCTA 59.217 40.000 0.00 0.00 0.00 3.53
711 719 4.126437 TCTCGCATGTTGTTTTTCTCTCA 58.874 39.130 0.00 0.00 0.00 3.27
714 722 3.365364 CCCTCTCGCATGTTGTTTTTCTC 60.365 47.826 0.00 0.00 0.00 2.87
716 724 2.922335 GCCCTCTCGCATGTTGTTTTTC 60.922 50.000 0.00 0.00 0.00 2.29
757 807 0.991920 ATTCGGTGGACTGGATGGTT 59.008 50.000 0.00 0.00 0.00 3.67
824 874 3.412624 GATCAGCTGGTCCAGGGCC 62.413 68.421 20.72 1.68 31.21 5.80
825 875 2.191641 GATCAGCTGGTCCAGGGC 59.808 66.667 20.72 8.03 31.21 5.19
826 876 1.351080 ATGGATCAGCTGGTCCAGGG 61.351 60.000 42.72 5.95 46.87 4.45
827 877 0.108207 GATGGATCAGCTGGTCCAGG 59.892 60.000 42.72 6.74 46.87 4.45
908 968 2.526873 ACTGGCACGGGGAGTCTT 60.527 61.111 0.00 0.00 40.47 3.01
917 977 1.165907 TTTTGAGAGGCACTGGCACG 61.166 55.000 5.25 0.00 41.55 5.34
919 979 0.183492 AGTTTTGAGAGGCACTGGCA 59.817 50.000 5.25 0.00 41.55 4.92
920 980 0.877743 GAGTTTTGAGAGGCACTGGC 59.122 55.000 0.00 0.00 41.55 4.85
926 986 3.246619 CGTGTAGAGAGTTTTGAGAGGC 58.753 50.000 0.00 0.00 0.00 4.70
928 988 4.861210 ACACGTGTAGAGAGTTTTGAGAG 58.139 43.478 21.98 0.00 0.00 3.20
954 1016 2.901051 CTAACGAACGCGGGGATGCT 62.901 60.000 12.47 0.00 43.17 3.79
994 1057 1.657751 GCCGGGAGCTCCATGTTTTC 61.658 60.000 33.29 13.59 38.99 2.29
1264 1330 9.910511 CAAAAGAACAATGACAAAATCAAGAAG 57.089 29.630 0.00 0.00 41.93 2.85
1271 1355 7.601886 TCACACACAAAAGAACAATGACAAAAT 59.398 29.630 0.00 0.00 0.00 1.82
1273 1357 6.450545 TCACACACAAAAGAACAATGACAAA 58.549 32.000 0.00 0.00 0.00 2.83
1274 1358 6.018589 TCACACACAAAAGAACAATGACAA 57.981 33.333 0.00 0.00 0.00 3.18
1275 1359 5.635417 TCACACACAAAAGAACAATGACA 57.365 34.783 0.00 0.00 0.00 3.58
1276 1360 5.861251 TGTTCACACACAAAAGAACAATGAC 59.139 36.000 4.55 0.00 45.01 3.06
1277 1361 6.018589 TGTTCACACACAAAAGAACAATGA 57.981 33.333 4.55 0.00 45.01 2.57
1278 1362 6.092092 TCTGTTCACACACAAAAGAACAATG 58.908 36.000 8.03 0.00 46.56 2.82
1279 1363 6.266168 TCTGTTCACACACAAAAGAACAAT 57.734 33.333 8.03 0.00 46.56 2.71
1280 1364 5.697473 TCTGTTCACACACAAAAGAACAA 57.303 34.783 8.03 0.00 46.56 2.83
1281 1365 5.697473 TTCTGTTCACACACAAAAGAACA 57.303 34.783 0.00 0.00 45.57 3.18
1282 1366 4.558860 GCTTCTGTTCACACACAAAAGAAC 59.441 41.667 0.00 0.00 40.45 3.01
1283 1367 4.671508 CGCTTCTGTTCACACACAAAAGAA 60.672 41.667 0.00 0.00 0.00 2.52
1284 1368 3.181511 CGCTTCTGTTCACACACAAAAGA 60.182 43.478 0.00 0.00 0.00 2.52
1285 1369 3.100817 CGCTTCTGTTCACACACAAAAG 58.899 45.455 0.00 0.00 0.00 2.27
1286 1370 2.486203 ACGCTTCTGTTCACACACAAAA 59.514 40.909 0.00 0.00 0.00 2.44
1287 1371 2.080693 ACGCTTCTGTTCACACACAAA 58.919 42.857 0.00 0.00 0.00 2.83
1290 1374 1.286501 TGACGCTTCTGTTCACACAC 58.713 50.000 0.00 0.00 0.00 3.82
1301 1385 2.257974 TCGAGTGTGTATGACGCTTC 57.742 50.000 0.00 0.00 45.82 3.86
1304 1388 2.159558 TCTCTTCGAGTGTGTATGACGC 60.160 50.000 0.00 0.00 35.06 5.19
1312 1396 2.528125 CAGCATCTCTCTTCGAGTGTG 58.472 52.381 0.00 0.00 40.75 3.82
1314 1398 1.747924 TCCAGCATCTCTCTTCGAGTG 59.252 52.381 0.00 0.00 40.75 3.51
1330 1418 6.332630 CAAACTAACCAGCCAATATTTCCAG 58.667 40.000 0.00 0.00 0.00 3.86
1333 1421 5.109210 GCCAAACTAACCAGCCAATATTTC 58.891 41.667 0.00 0.00 0.00 2.17
1336 1424 3.701040 CTGCCAAACTAACCAGCCAATAT 59.299 43.478 0.00 0.00 0.00 1.28
1338 1426 1.895131 CTGCCAAACTAACCAGCCAAT 59.105 47.619 0.00 0.00 0.00 3.16
1361 1449 5.240121 ACATTTGCTTGGTTTCATTCCATC 58.760 37.500 0.00 0.00 34.75 3.51
1419 1508 3.655615 AGTAACGGGGAAATGGCAATA 57.344 42.857 0.00 0.00 0.00 1.90
1474 1593 8.834465 GTTCATTCAGCATATAGACATTTCAGT 58.166 33.333 0.00 0.00 0.00 3.41
1522 1641 8.376270 AGTATCAAATTAGGCCCTGATTACTAC 58.624 37.037 0.54 4.46 31.20 2.73
1526 1645 7.582719 ACAAGTATCAAATTAGGCCCTGATTA 58.417 34.615 0.54 0.00 31.20 1.75
1535 1654 7.690256 AGGCCCTATACAAGTATCAAATTAGG 58.310 38.462 0.00 0.00 0.00 2.69
1543 1662 7.660617 GGAAACTAAAGGCCCTATACAAGTATC 59.339 40.741 0.00 0.00 0.00 2.24
1687 1808 0.037303 CCATGCTCACACACCTTCCT 59.963 55.000 0.00 0.00 0.00 3.36
1768 1889 1.332997 GCTGCTGCATATGTCAGGAAC 59.667 52.381 21.11 14.01 39.41 3.62
1769 1890 1.065272 TGCTGCTGCATATGTCAGGAA 60.065 47.619 14.93 8.32 45.31 3.36
1770 1891 0.542805 TGCTGCTGCATATGTCAGGA 59.457 50.000 14.93 18.72 45.31 3.86
1771 1892 3.089788 TGCTGCTGCATATGTCAGG 57.910 52.632 14.93 11.45 45.31 3.86
1888 2019 0.321653 CACCCTCGAGTTTTCCCTGG 60.322 60.000 12.31 5.11 0.00 4.45
1895 2026 1.668151 GCGCTTCACCCTCGAGTTT 60.668 57.895 12.31 0.00 0.00 2.66
1897 2028 4.421479 CGCGCTTCACCCTCGAGT 62.421 66.667 12.31 0.00 0.00 4.18
2106 2240 2.805353 CACGTTCCTGCTCGACGG 60.805 66.667 0.00 0.00 40.82 4.79
2150 2284 4.767255 CTCCAGGCCCAGCACGAC 62.767 72.222 0.00 0.00 0.00 4.34
2181 2315 0.895100 GGTTCTTCATGCACCAGCCA 60.895 55.000 0.00 0.00 41.13 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.