Multiple sequence alignment - TraesCS3D01G122000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G122000 chr3D 100.000 4812 0 0 1 4812 79599230 79604041 0.000000e+00 8887.0
1 TraesCS3D01G122000 chr3D 90.000 120 8 4 2403 2519 96743395 96743513 8.340000e-33 152.0
2 TraesCS3D01G122000 chr3D 92.000 100 4 4 2268 2365 349636632 349636729 2.340000e-28 137.0
3 TraesCS3D01G122000 chr3D 82.051 117 10 4 2401 2517 200042945 200043050 6.630000e-14 89.8
4 TraesCS3D01G122000 chr3D 80.165 121 13 1 2401 2521 88591893 88591784 3.990000e-11 80.5
5 TraesCS3D01G122000 chr3B 91.165 2026 135 22 2518 4528 125928277 125930273 0.000000e+00 2710.0
6 TraesCS3D01G122000 chr3B 95.430 1466 54 6 820 2274 125926748 125928211 0.000000e+00 2324.0
7 TraesCS3D01G122000 chr3B 94.531 128 7 0 4512 4639 125937648 125937775 1.060000e-46 198.0
8 TraesCS3D01G122000 chr3B 89.720 107 9 2 2260 2365 389045496 389045601 8.400000e-28 135.0
9 TraesCS3D01G122000 chr3B 78.992 119 13 8 2402 2519 806147194 806147087 2.400000e-08 71.3
10 TraesCS3D01G122000 chr3A 92.948 1418 75 8 784 2199 93589753 93591147 0.000000e+00 2041.0
11 TraesCS3D01G122000 chr3A 88.274 1680 156 17 627 2276 93686522 93688190 0.000000e+00 1973.0
12 TraesCS3D01G122000 chr3A 89.983 1198 52 15 2949 4115 93688843 93690003 0.000000e+00 1485.0
13 TraesCS3D01G122000 chr3A 89.176 619 40 5 1 613 597119283 597118686 0.000000e+00 747.0
14 TraesCS3D01G122000 chr3A 94.896 431 19 1 2518 2948 93688255 93688682 0.000000e+00 671.0
15 TraesCS3D01G122000 chr3A 93.651 252 14 2 4395 4645 93697593 93697843 4.550000e-100 375.0
16 TraesCS3D01G122000 chr3A 90.164 122 12 0 4151 4272 93690004 93690125 4.980000e-35 159.0
17 TraesCS3D01G122000 chr3A 97.183 71 2 0 2354 2424 93688186 93688256 2.350000e-23 121.0
18 TraesCS3D01G122000 chr3A 92.982 57 4 0 4733 4789 93698708 93698764 3.090000e-12 84.2
19 TraesCS3D01G122000 chr2A 90.678 590 31 5 26 614 103136753 103137319 0.000000e+00 763.0
20 TraesCS3D01G122000 chr2A 79.231 130 27 0 2751 2880 419185398 419185527 1.840000e-14 91.6
21 TraesCS3D01G122000 chr7D 89.761 586 38 3 29 614 364550955 364550392 0.000000e+00 730.0
22 TraesCS3D01G122000 chr7D 89.683 126 10 2 2423 2547 47450556 47450433 1.790000e-34 158.0
23 TraesCS3D01G122000 chr7D 92.308 65 5 0 2815 2879 605479356 605479420 5.130000e-15 93.5
24 TraesCS3D01G122000 chr7D 100.000 35 0 0 1835 1869 605478796 605478830 1.120000e-06 65.8
25 TraesCS3D01G122000 chr1D 89.880 583 27 4 32 614 132858477 132857927 0.000000e+00 721.0
26 TraesCS3D01G122000 chr1D 93.915 378 21 2 240 617 891500 891875 1.940000e-158 569.0
27 TraesCS3D01G122000 chr1D 92.857 112 8 0 2415 2526 174151278 174151167 3.850000e-36 163.0
28 TraesCS3D01G122000 chr6A 88.149 616 36 9 6 614 381029817 381029232 0.000000e+00 699.0
29 TraesCS3D01G122000 chr6A 86.620 142 14 5 2420 2559 380009650 380009788 8.340000e-33 152.0
30 TraesCS3D01G122000 chr2B 93.235 473 22 4 143 614 253271323 253271786 0.000000e+00 688.0
31 TraesCS3D01G122000 chr2B 93.878 98 5 1 2263 2359 30331700 30331603 3.880000e-31 147.0
32 TraesCS3D01G122000 chr2B 91.919 99 5 3 2265 2361 650285643 650285740 8.400000e-28 135.0
33 TraesCS3D01G122000 chr2B 91.000 100 7 2 2266 2364 197683333 197683235 3.020000e-27 134.0
34 TraesCS3D01G122000 chr2B 76.884 199 38 5 2751 2948 383646197 383646006 6.590000e-19 106.0
35 TraesCS3D01G122000 chr4B 89.074 540 34 5 2 536 88379929 88379410 0.000000e+00 647.0
36 TraesCS3D01G122000 chr4B 81.897 116 8 7 2405 2519 6009915 6010018 8.580000e-13 86.1
37 TraesCS3D01G122000 chr1A 94.051 353 14 5 1 347 281365781 281365430 3.300000e-146 529.0
38 TraesCS3D01G122000 chr1A 92.760 221 16 0 394 614 281365425 281365205 2.160000e-83 320.0
39 TraesCS3D01G122000 chr1A 97.980 99 2 0 2422 2520 399494549 399494647 6.400000e-39 172.0
40 TraesCS3D01G122000 chr5A 86.458 480 41 5 137 614 528833823 528834280 5.560000e-139 505.0
41 TraesCS3D01G122000 chr2D 93.750 304 11 1 1 304 306769600 306769305 2.640000e-122 449.0
42 TraesCS3D01G122000 chr2D 92.975 242 16 1 374 615 306767554 306767314 7.660000e-93 351.0
43 TraesCS3D01G122000 chr2D 93.750 112 3 3 2421 2530 562902797 562902688 1.070000e-36 165.0
44 TraesCS3D01G122000 chr2D 80.769 130 25 0 2751 2880 315984045 315983916 8.520000e-18 102.0
45 TraesCS3D01G122000 chr6D 98.058 103 1 1 2420 2521 83173498 83173600 1.380000e-40 178.0
46 TraesCS3D01G122000 chr6D 93.860 114 3 4 2423 2535 249994865 249994755 8.280000e-38 169.0
47 TraesCS3D01G122000 chr6D 76.923 117 23 4 1830 1944 36690072 36689958 4.020000e-06 63.9
48 TraesCS3D01G122000 chr6B 98.000 100 2 0 2423 2522 38619597 38619696 1.780000e-39 174.0
49 TraesCS3D01G122000 chr6B 94.681 94 4 1 2269 2361 281611965 281611872 1.400000e-30 145.0
50 TraesCS3D01G122000 chr6B 94.737 38 2 0 1827 1864 85108886 85108923 5.200000e-05 60.2
51 TraesCS3D01G122000 chr5B 95.327 107 5 0 2420 2526 704989269 704989375 2.300000e-38 171.0
52 TraesCS3D01G122000 chr5B 83.761 117 7 2 2407 2522 469291099 469290994 3.060000e-17 100.0
53 TraesCS3D01G122000 chr7B 92.784 97 4 3 2273 2366 107127483 107127387 2.340000e-28 137.0
54 TraesCS3D01G122000 chr7B 78.571 112 24 0 1833 1944 640512350 640512461 1.860000e-09 75.0
55 TraesCS3D01G122000 chr7B 78.095 105 21 2 1836 1939 689517705 689517602 1.120000e-06 65.8
56 TraesCS3D01G122000 chr4A 88.991 109 8 4 2258 2363 736987773 736987880 1.090000e-26 132.0
57 TraesCS3D01G122000 chr4A 88.991 109 8 4 2258 2363 737015342 737015449 1.090000e-26 132.0
58 TraesCS3D01G122000 chr4A 85.088 114 4 2 2406 2519 743997995 743997895 2.370000e-18 104.0
59 TraesCS3D01G122000 chr7A 92.188 64 5 0 2816 2879 696947188 696947125 1.840000e-14 91.6
60 TraesCS3D01G122000 chr7A 90.625 64 6 0 2816 2879 696877722 696877659 8.580000e-13 86.1
61 TraesCS3D01G122000 chrUn 90.625 64 6 0 2816 2879 401645507 401645570 8.580000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G122000 chr3D 79599230 79604041 4811 False 8887.0 8887 100.0000 1 4812 1 chr3D.!!$F1 4811
1 TraesCS3D01G122000 chr3B 125926748 125930273 3525 False 2517.0 2710 93.2975 820 4528 2 chr3B.!!$F3 3708
2 TraesCS3D01G122000 chr3A 93589753 93591147 1394 False 2041.0 2041 92.9480 784 2199 1 chr3A.!!$F1 1415
3 TraesCS3D01G122000 chr3A 93686522 93690125 3603 False 881.8 1973 92.1000 627 4272 5 chr3A.!!$F2 3645
4 TraesCS3D01G122000 chr3A 597118686 597119283 597 True 747.0 747 89.1760 1 613 1 chr3A.!!$R1 612
5 TraesCS3D01G122000 chr3A 93697593 93698764 1171 False 229.6 375 93.3165 4395 4789 2 chr3A.!!$F3 394
6 TraesCS3D01G122000 chr2A 103136753 103137319 566 False 763.0 763 90.6780 26 614 1 chr2A.!!$F1 588
7 TraesCS3D01G122000 chr7D 364550392 364550955 563 True 730.0 730 89.7610 29 614 1 chr7D.!!$R2 585
8 TraesCS3D01G122000 chr1D 132857927 132858477 550 True 721.0 721 89.8800 32 614 1 chr1D.!!$R1 582
9 TraesCS3D01G122000 chr6A 381029232 381029817 585 True 699.0 699 88.1490 6 614 1 chr6A.!!$R1 608
10 TraesCS3D01G122000 chr4B 88379410 88379929 519 True 647.0 647 89.0740 2 536 1 chr4B.!!$R1 534
11 TraesCS3D01G122000 chr1A 281365205 281365781 576 True 424.5 529 93.4055 1 614 2 chr1A.!!$R1 613
12 TraesCS3D01G122000 chr2D 306767314 306769600 2286 True 400.0 449 93.3625 1 615 2 chr2D.!!$R3 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 2578 0.171455 CTATCGACTATCGCTGGCCC 59.829 60.0 0.00 0.0 40.21 5.80 F
2058 3810 0.604578 ACCTTGCGCTTTACTACCGA 59.395 50.0 9.73 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2668 4423 0.534203 TGGCGGTTGGAGAAAGACAC 60.534 55.0 0.0 0.0 0.00 3.67 R
3850 5791 0.464036 AGAGTGCTGTTGACACCGAA 59.536 50.0 0.0 0.0 38.87 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.445878 CATGCCAATATATAGAGAACTTGTGAT 57.554 33.333 0.00 0.00 0.00 3.06
200 209 6.594159 GCTGGCAACACTCTAGAAATACTTAA 59.406 38.462 0.00 0.00 46.17 1.85
353 2062 1.890894 CCTCGACCGTCCATCACTT 59.109 57.895 0.00 0.00 0.00 3.16
378 2087 4.247380 CGCCCTCCTCCATGCCTC 62.247 72.222 0.00 0.00 0.00 4.70
379 2088 4.247380 GCCCTCCTCCATGCCTCG 62.247 72.222 0.00 0.00 0.00 4.63
380 2089 4.247380 CCCTCCTCCATGCCTCGC 62.247 72.222 0.00 0.00 0.00 5.03
425 2134 5.117135 GCCGCAACTAGATTTTTCTGTTTTC 59.883 40.000 0.00 0.00 0.00 2.29
448 2161 2.033602 ACGTGGTAAAGCAGGGGC 59.966 61.111 6.78 0.00 41.61 5.80
469 2182 6.351286 GGGGCAAATAAGACATTTCAAGTCAT 60.351 38.462 0.00 0.00 38.46 3.06
615 2328 3.891977 GGCCAAATAAGGAATTCTCTCCC 59.108 47.826 5.23 0.00 35.95 4.30
616 2329 4.536765 GCCAAATAAGGAATTCTCTCCCA 58.463 43.478 5.23 0.00 35.95 4.37
617 2330 4.956075 GCCAAATAAGGAATTCTCTCCCAA 59.044 41.667 5.23 0.00 35.95 4.12
618 2331 5.068329 GCCAAATAAGGAATTCTCTCCCAAG 59.932 44.000 5.23 0.00 35.95 3.61
619 2332 5.068329 CCAAATAAGGAATTCTCTCCCAAGC 59.932 44.000 5.23 0.00 35.95 4.01
620 2333 5.456921 AATAAGGAATTCTCTCCCAAGCA 57.543 39.130 5.23 0.00 35.95 3.91
621 2334 5.659849 ATAAGGAATTCTCTCCCAAGCAT 57.340 39.130 5.23 0.00 35.95 3.79
622 2335 6.770286 ATAAGGAATTCTCTCCCAAGCATA 57.230 37.500 5.23 0.00 35.95 3.14
623 2336 5.456921 AAGGAATTCTCTCCCAAGCATAA 57.543 39.130 5.23 0.00 35.95 1.90
624 2337 5.046288 AGGAATTCTCTCCCAAGCATAAG 57.954 43.478 5.23 0.00 35.95 1.73
625 2338 4.476479 AGGAATTCTCTCCCAAGCATAAGT 59.524 41.667 5.23 0.00 35.95 2.24
640 2353 3.876156 GCATAAGTCCAGCCCAAGGTTTA 60.876 47.826 0.00 0.00 0.00 2.01
651 2364 2.035321 CCCAAGGTTTAACGCATGTGTT 59.965 45.455 26.43 26.43 35.86 3.32
653 2366 4.116238 CCAAGGTTTAACGCATGTGTTTT 58.884 39.130 28.11 14.09 33.32 2.43
657 2370 5.516090 AGGTTTAACGCATGTGTTTTGTAG 58.484 37.500 28.11 0.00 33.32 2.74
658 2371 4.147479 GGTTTAACGCATGTGTTTTGTAGC 59.853 41.667 28.11 16.25 33.32 3.58
659 2372 4.553756 TTAACGCATGTGTTTTGTAGCA 57.446 36.364 28.11 7.16 33.32 3.49
660 2373 3.428746 AACGCATGTGTTTTGTAGCAA 57.571 38.095 18.77 0.00 0.00 3.91
661 2374 3.428746 ACGCATGTGTTTTGTAGCAAA 57.571 38.095 5.96 0.00 0.00 3.68
663 2376 4.367450 ACGCATGTGTTTTGTAGCAAAAT 58.633 34.783 5.96 0.00 0.00 1.82
665 2378 6.155827 ACGCATGTGTTTTGTAGCAAAATAT 58.844 32.000 5.96 4.04 0.00 1.28
666 2379 7.309177 ACGCATGTGTTTTGTAGCAAAATATA 58.691 30.769 5.96 6.64 0.00 0.86
667 2380 7.973388 ACGCATGTGTTTTGTAGCAAAATATAT 59.027 29.630 5.96 8.35 0.00 0.86
690 2406 6.385649 TTTTTAATGAGAGGTGACGCTTTT 57.614 33.333 0.00 0.00 42.18 2.27
706 2422 5.018695 CGCTTTTATGGTTTATAGAGGCG 57.981 43.478 0.00 0.00 42.47 5.52
709 2425 5.758784 GCTTTTATGGTTTATAGAGGCGAGT 59.241 40.000 0.00 0.00 0.00 4.18
710 2426 6.292919 GCTTTTATGGTTTATAGAGGCGAGTG 60.293 42.308 0.00 0.00 0.00 3.51
714 2430 4.901868 TGGTTTATAGAGGCGAGTGTTTT 58.098 39.130 0.00 0.00 0.00 2.43
742 2458 7.120923 AGGGTGATATTAGTGTTATCGTGTT 57.879 36.000 0.00 0.00 0.00 3.32
767 2483 9.790389 TTTACTAAAACAAATCACGTCACATTT 57.210 25.926 0.00 0.00 0.00 2.32
816 2532 3.504520 TCCGTATGGCAGAAAAGGAAAAC 59.495 43.478 0.00 0.00 34.14 2.43
828 2544 4.415881 AAAGGAAAACACCATTTCACCC 57.584 40.909 2.63 0.00 40.34 4.61
829 2545 3.039252 AGGAAAACACCATTTCACCCA 57.961 42.857 2.63 0.00 40.34 4.51
840 2556 2.930826 TTTCACCCACAAGAGTCTCC 57.069 50.000 0.00 0.00 0.00 3.71
862 2578 0.171455 CTATCGACTATCGCTGGCCC 59.829 60.000 0.00 0.00 40.21 5.80
895 2612 1.757423 CTGCAAACCCCCAAACCCTG 61.757 60.000 0.00 0.00 0.00 4.45
917 2634 3.439540 CCCCAAATCACCGTGCCG 61.440 66.667 0.00 0.00 0.00 5.69
921 2647 2.740826 AAATCACCGTGCCGACCG 60.741 61.111 0.00 0.00 0.00 4.79
1117 2848 3.417275 ATCCTCGTCAAGCTCCGCG 62.417 63.158 0.00 0.00 0.00 6.46
1176 2907 1.371183 CTGGCGTGACCTCTGGAAA 59.629 57.895 0.00 0.00 40.22 3.13
1395 3144 2.046285 GGATGGGGAAACAGGCACG 61.046 63.158 0.00 0.00 0.00 5.34
1528 3277 1.743995 GCCGTTAGGATGCGTGGTT 60.744 57.895 0.00 0.00 41.02 3.67
1674 3426 7.256691 GGGATGGATAATGTGTTACTAGACCAT 60.257 40.741 0.00 0.00 37.16 3.55
2055 3807 3.123116 GTCTTGACCTTGCGCTTTACTAC 59.877 47.826 9.73 0.00 0.00 2.73
2058 3810 0.604578 ACCTTGCGCTTTACTACCGA 59.395 50.000 9.73 0.00 0.00 4.69
2078 3830 4.270008 CGAAAGGTGGGTTCCATTCTTAT 58.730 43.478 6.14 0.00 35.28 1.73
2142 3896 3.387699 ACAAGGCAAATATGGGGTTATGC 59.612 43.478 0.00 0.00 0.00 3.14
2278 4033 6.316513 AGTTATCCTCTTAGATGGTACTCCC 58.683 44.000 0.00 0.00 0.00 4.30
2279 4034 6.104990 AGTTATCCTCTTAGATGGTACTCCCT 59.895 42.308 0.00 0.00 0.00 4.20
2280 4035 4.456662 TCCTCTTAGATGGTACTCCCTC 57.543 50.000 0.00 0.00 0.00 4.30
2281 4036 3.140519 TCCTCTTAGATGGTACTCCCTCC 59.859 52.174 0.00 0.00 0.00 4.30
2282 4037 3.150767 CTCTTAGATGGTACTCCCTCCG 58.849 54.545 0.00 0.00 0.00 4.63
2283 4038 2.512896 TCTTAGATGGTACTCCCTCCGT 59.487 50.000 0.00 0.00 0.00 4.69
2284 4039 3.718434 TCTTAGATGGTACTCCCTCCGTA 59.282 47.826 0.00 0.00 0.00 4.02
2285 4040 4.166725 TCTTAGATGGTACTCCCTCCGTAA 59.833 45.833 0.00 0.00 0.00 3.18
2286 4041 3.393426 AGATGGTACTCCCTCCGTAAA 57.607 47.619 0.00 0.00 0.00 2.01
2287 4042 3.297736 AGATGGTACTCCCTCCGTAAAG 58.702 50.000 0.00 0.00 0.00 1.85
2288 4043 2.905415 TGGTACTCCCTCCGTAAAGA 57.095 50.000 0.00 0.00 0.00 2.52
2289 4044 3.173953 TGGTACTCCCTCCGTAAAGAA 57.826 47.619 0.00 0.00 0.00 2.52
2290 4045 3.716431 TGGTACTCCCTCCGTAAAGAAT 58.284 45.455 0.00 0.00 0.00 2.40
2291 4046 4.870636 TGGTACTCCCTCCGTAAAGAATA 58.129 43.478 0.00 0.00 0.00 1.75
2292 4047 5.461327 TGGTACTCCCTCCGTAAAGAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2293 4048 6.613699 TGGTACTCCCTCCGTAAAGAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2294 4049 7.068702 TGGTACTCCCTCCGTAAAGAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2295 4050 7.232127 TGGTACTCCCTCCGTAAAGAATATAAG 59.768 40.741 0.00 0.00 0.00 1.73
2296 4051 7.449704 GGTACTCCCTCCGTAAAGAATATAAGA 59.550 40.741 0.00 0.00 0.00 2.10
2297 4052 7.527568 ACTCCCTCCGTAAAGAATATAAGAG 57.472 40.000 0.00 0.00 0.00 2.85
2298 4053 6.015265 ACTCCCTCCGTAAAGAATATAAGAGC 60.015 42.308 0.00 0.00 0.00 4.09
2299 4054 5.836898 TCCCTCCGTAAAGAATATAAGAGCA 59.163 40.000 0.00 0.00 0.00 4.26
2300 4055 6.497259 TCCCTCCGTAAAGAATATAAGAGCAT 59.503 38.462 0.00 0.00 0.00 3.79
2301 4056 7.016268 TCCCTCCGTAAAGAATATAAGAGCATT 59.984 37.037 0.00 0.00 0.00 3.56
2302 4057 7.661847 CCCTCCGTAAAGAATATAAGAGCATTT 59.338 37.037 0.00 0.00 0.00 2.32
2303 4058 9.706691 CCTCCGTAAAGAATATAAGAGCATTTA 57.293 33.333 0.00 0.00 0.00 1.40
2319 4074 9.593134 AAGAGCATTTAGATGACTACTTTAGTG 57.407 33.333 0.00 0.00 39.59 2.74
2320 4075 8.972127 AGAGCATTTAGATGACTACTTTAGTGA 58.028 33.333 0.00 0.00 39.59 3.41
2321 4076 9.757227 GAGCATTTAGATGACTACTTTAGTGAT 57.243 33.333 0.00 0.00 39.59 3.06
2322 4077 9.757227 AGCATTTAGATGACTACTTTAGTGATC 57.243 33.333 5.04 5.04 45.85 2.92
2329 4084 7.988904 ATGACTACTTTAGTGATCTAAACGC 57.011 36.000 0.00 0.00 40.05 4.84
2330 4085 7.154435 TGACTACTTTAGTGATCTAAACGCT 57.846 36.000 0.00 0.00 40.05 5.07
2331 4086 7.249147 TGACTACTTTAGTGATCTAAACGCTC 58.751 38.462 0.00 0.00 40.05 5.03
2332 4087 7.120873 TGACTACTTTAGTGATCTAAACGCTCT 59.879 37.037 0.00 0.00 40.05 4.09
2333 4088 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
2334 4089 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
2335 4090 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
2351 4106 9.490379 AACGCTCTTATATTTATTTACAGAGGG 57.510 33.333 8.36 8.36 42.53 4.30
2352 4107 8.867097 ACGCTCTTATATTTATTTACAGAGGGA 58.133 33.333 14.96 0.00 40.49 4.20
2377 4132 4.020543 ACTTGCTTTGTACCACCTTTGAA 58.979 39.130 0.00 0.00 0.00 2.69
2423 4178 9.784531 ACGCTAGTATTACTACACTAGGATTTA 57.215 33.333 9.99 0.00 42.93 1.40
2428 4183 9.585369 AGTATTACTACACTAGGATTTACTCCC 57.415 37.037 0.00 0.00 46.27 4.30
2429 4184 9.585369 GTATTACTACACTAGGATTTACTCCCT 57.415 37.037 0.00 0.00 46.27 4.20
2430 4185 8.709272 ATTACTACACTAGGATTTACTCCCTC 57.291 38.462 0.00 0.00 46.27 4.30
2431 4186 5.456779 ACTACACTAGGATTTACTCCCTCC 58.543 45.833 0.00 0.00 46.27 4.30
2432 4187 3.297736 ACACTAGGATTTACTCCCTCCG 58.702 50.000 0.00 0.00 46.27 4.63
2433 4188 3.297736 CACTAGGATTTACTCCCTCCGT 58.702 50.000 0.00 0.00 46.27 4.69
2434 4189 3.705072 CACTAGGATTTACTCCCTCCGTT 59.295 47.826 0.00 0.00 46.27 4.44
2435 4190 4.161754 CACTAGGATTTACTCCCTCCGTTT 59.838 45.833 0.00 0.00 46.27 3.60
2436 4191 3.908643 AGGATTTACTCCCTCCGTTTC 57.091 47.619 0.00 0.00 46.27 2.78
2437 4192 3.178865 AGGATTTACTCCCTCCGTTTCA 58.821 45.455 0.00 0.00 46.27 2.69
2438 4193 3.585732 AGGATTTACTCCCTCCGTTTCAA 59.414 43.478 0.00 0.00 46.27 2.69
2439 4194 4.042435 AGGATTTACTCCCTCCGTTTCAAA 59.958 41.667 0.00 0.00 46.27 2.69
2440 4195 4.763279 GGATTTACTCCCTCCGTTTCAAAA 59.237 41.667 0.00 0.00 38.19 2.44
2441 4196 5.417894 GGATTTACTCCCTCCGTTTCAAAAT 59.582 40.000 0.00 0.00 38.19 1.82
2442 4197 6.600427 GGATTTACTCCCTCCGTTTCAAAATA 59.400 38.462 0.00 0.00 38.19 1.40
2443 4198 7.201705 GGATTTACTCCCTCCGTTTCAAAATAG 60.202 40.741 0.00 0.00 38.19 1.73
2444 4199 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
2445 4200 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
2446 4201 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2447 4202 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
2448 4203 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
2449 4204 4.335594 CCCTCCGTTTCAAAATAGATGACC 59.664 45.833 0.00 0.00 0.00 4.02
2450 4205 4.335594 CCTCCGTTTCAAAATAGATGACCC 59.664 45.833 0.00 0.00 0.00 4.46
2451 4206 4.912586 TCCGTTTCAAAATAGATGACCCA 58.087 39.130 0.00 0.00 0.00 4.51
2452 4207 5.317808 TCCGTTTCAAAATAGATGACCCAA 58.682 37.500 0.00 0.00 0.00 4.12
2453 4208 5.182380 TCCGTTTCAAAATAGATGACCCAAC 59.818 40.000 0.00 0.00 0.00 3.77
2454 4209 5.183140 CCGTTTCAAAATAGATGACCCAACT 59.817 40.000 0.00 0.00 0.00 3.16
2455 4210 6.294508 CCGTTTCAAAATAGATGACCCAACTT 60.295 38.462 0.00 0.00 0.00 2.66
2456 4211 7.145323 CGTTTCAAAATAGATGACCCAACTTT 58.855 34.615 0.00 0.00 0.00 2.66
2457 4212 7.114811 CGTTTCAAAATAGATGACCCAACTTTG 59.885 37.037 0.00 0.00 0.00 2.77
2458 4213 7.595819 TTCAAAATAGATGACCCAACTTTGT 57.404 32.000 0.00 0.00 0.00 2.83
2459 4214 8.698973 TTCAAAATAGATGACCCAACTTTGTA 57.301 30.769 0.00 0.00 0.00 2.41
2460 4215 8.106247 TCAAAATAGATGACCCAACTTTGTAC 57.894 34.615 0.00 0.00 0.00 2.90
2461 4216 7.942341 TCAAAATAGATGACCCAACTTTGTACT 59.058 33.333 0.00 0.00 0.00 2.73
2462 4217 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
2463 4218 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2464 4219 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2465 4220 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2466 4221 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2467 4222 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2468 4223 6.687081 TGACCCAACTTTGTACTAACTTTG 57.313 37.500 0.00 0.00 0.00 2.77
2469 4224 6.181908 TGACCCAACTTTGTACTAACTTTGT 58.818 36.000 0.00 0.00 0.00 2.83
2470 4225 7.337167 TGACCCAACTTTGTACTAACTTTGTA 58.663 34.615 0.00 0.00 0.00 2.41
2471 4226 7.280652 TGACCCAACTTTGTACTAACTTTGTAC 59.719 37.037 6.58 6.58 40.27 2.90
2472 4227 7.341030 ACCCAACTTTGTACTAACTTTGTACT 58.659 34.615 12.73 0.00 40.44 2.73
2473 4228 8.485392 ACCCAACTTTGTACTAACTTTGTACTA 58.515 33.333 12.73 4.86 40.44 1.82
2474 4229 9.328845 CCCAACTTTGTACTAACTTTGTACTAA 57.671 33.333 12.73 10.75 40.44 2.24
2495 4250 7.567458 ACTAAAGTTAGTACAAAGTTGGGTCA 58.433 34.615 1.81 0.00 41.92 4.02
2496 4251 8.215736 ACTAAAGTTAGTACAAAGTTGGGTCAT 58.784 33.333 1.81 0.00 41.92 3.06
2497 4252 7.506328 AAAGTTAGTACAAAGTTGGGTCATC 57.494 36.000 0.00 0.00 0.00 2.92
2498 4253 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2499 4254 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2500 4255 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2501 4256 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2502 4257 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2503 4258 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2505 4260 9.449719 AGTACAAAGTTGGGTCATCTATTTTAG 57.550 33.333 0.00 0.00 0.00 1.85
2506 4261 9.444600 GTACAAAGTTGGGTCATCTATTTTAGA 57.555 33.333 0.00 0.00 39.50 2.10
2507 4262 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
2508 4263 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
2509 4264 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
2510 4265 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
2511 4266 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
2512 4267 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
2513 4268 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
2514 4269 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
2515 4270 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
2516 4271 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
2517 4272 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
2575 4330 1.409790 CATGAGCTCTCAGGAGTGGAG 59.590 57.143 16.19 0.00 43.36 3.86
2682 4439 5.542779 AGTATGTCTGTGTCTTTCTCCAAC 58.457 41.667 0.00 0.00 0.00 3.77
2683 4440 3.194005 TGTCTGTGTCTTTCTCCAACC 57.806 47.619 0.00 0.00 0.00 3.77
2684 4441 2.135933 GTCTGTGTCTTTCTCCAACCG 58.864 52.381 0.00 0.00 0.00 4.44
2687 4444 0.534203 GTGTCTTTCTCCAACCGCCA 60.534 55.000 0.00 0.00 0.00 5.69
2707 4464 9.220906 ACCGCCATTATATATAATCCTCCTTTA 57.779 33.333 13.96 0.00 30.91 1.85
2724 4481 6.768381 CCTCCTTTATGACTTTCTATCAACCC 59.232 42.308 0.00 0.00 0.00 4.11
2776 4533 1.751927 GGAGGACATGCCAAGGCTG 60.752 63.158 12.96 10.28 42.51 4.85
2798 4555 7.039784 GGCTGCCATATATTTTATTCTTGTCCA 60.040 37.037 15.17 0.00 0.00 4.02
3092 5009 3.447229 AGTGGCATACTAATTGGGTTTGC 59.553 43.478 15.06 15.06 38.04 3.68
3126 5046 9.669353 GTAATATGTTGCATTTCGAAAGATCAT 57.331 29.630 16.80 15.94 41.60 2.45
3194 5115 2.169832 TTGACGCTTCCTTCCTCTTG 57.830 50.000 0.00 0.00 0.00 3.02
3273 5194 7.993183 TGGAGGATCTTTTATAATGGTTCTGTC 59.007 37.037 0.00 0.00 33.73 3.51
3352 5273 7.236225 GGCCCCAACTAATTTCTAGGTAGTATA 59.764 40.741 0.00 0.00 0.00 1.47
3378 5300 9.296400 ACTTTTGTTAATGTTGTTGTGTCATAC 57.704 29.630 0.00 0.00 0.00 2.39
3742 5664 4.962995 ACATTACTAAGCTTCTCTAGGCCA 59.037 41.667 5.01 0.00 0.00 5.36
3793 5715 1.290955 CTTGTACGCGAAGGTCCCA 59.709 57.895 15.93 0.00 0.00 4.37
3830 5771 1.656441 GGCACCTGCTTGTGTCTTG 59.344 57.895 7.79 0.00 37.85 3.02
3831 5772 1.008079 GCACCTGCTTGTGTCTTGC 60.008 57.895 7.79 0.00 38.52 4.01
3832 5773 1.727511 GCACCTGCTTGTGTCTTGCA 61.728 55.000 7.79 0.00 38.52 4.08
3833 5774 3.849844 GCACCTGCTTGTGTCTTGCAC 62.850 57.143 7.79 0.00 42.23 4.57
3940 5881 8.243426 GTCATCAACCTATTTTGCAAGATGTTA 58.757 33.333 12.50 0.00 34.71 2.41
3992 5940 2.094494 GCTCACGAATGGAGTTCTCAGA 60.094 50.000 0.00 0.00 34.56 3.27
3997 5945 2.278854 GAATGGAGTTCTCAGAGCTGC 58.721 52.381 2.83 2.83 32.57 5.25
4020 5968 2.294074 TCACAAGCCTTTGGTGTGTAC 58.706 47.619 3.22 0.00 38.66 2.90
4021 5969 2.020720 CACAAGCCTTTGGTGTGTACA 58.979 47.619 0.00 0.00 38.66 2.90
4024 5972 3.704061 ACAAGCCTTTGGTGTGTACAATT 59.296 39.130 0.00 0.00 38.66 2.32
4048 6018 4.563061 GAATCTTGGCATGCTCAAAAGTT 58.437 39.130 18.92 13.15 0.00 2.66
4057 6027 5.464168 GCATGCTCAAAAGTTGTAGTGAAT 58.536 37.500 11.37 0.00 0.00 2.57
4116 6086 1.021390 GTGGCACTGACTGAATCCCG 61.021 60.000 11.13 0.00 0.00 5.14
4130 6100 6.935167 ACTGAATCCCGAGCATTTAAAAATT 58.065 32.000 0.00 0.00 0.00 1.82
4169 6140 5.745294 CAGTGTGGTTTTGTCTGAAGAAATG 59.255 40.000 0.00 0.00 0.00 2.32
4206 6177 8.440059 TGATGTATTTACAAGCAAACTAGTTCG 58.560 33.333 8.95 0.00 39.99 3.95
4249 6220 6.435591 AGAGCATATCTCATAAGGAATGACGA 59.564 38.462 0.00 0.00 44.35 4.20
4272 6244 7.971168 ACGAAGATACTTTCTTGAGTACATGAG 59.029 37.037 0.00 0.00 44.88 2.90
4276 6248 5.234466 ACTTTCTTGAGTACATGAGCCTT 57.766 39.130 0.00 0.00 33.06 4.35
4299 6271 8.992073 CCTTGATTTGAAGGAAAACTAATTTGG 58.008 33.333 0.00 0.00 44.87 3.28
4462 6437 2.866460 GCAAGTTGGTCTAGTCGAAGCA 60.866 50.000 4.75 0.00 0.00 3.91
4552 6527 9.875691 AGGAATAGCAGAAATAAATGGAAAAAC 57.124 29.630 0.00 0.00 0.00 2.43
4581 6556 2.876091 TCTAGACGTACAATGCAGCAC 58.124 47.619 0.00 0.00 0.00 4.40
4597 6572 1.330306 GCACGCAGCAATAACAACAG 58.670 50.000 0.00 0.00 44.79 3.16
4606 6581 3.991773 AGCAATAACAACAGCATTTGCAG 59.008 39.130 5.20 0.00 45.16 4.41
4619 6594 2.472695 TTTGCAGACCGAAGTAGCAT 57.527 45.000 0.00 0.00 37.08 3.79
4640 6615 1.136891 ACAAGCAAGGAACAAAGCCAC 59.863 47.619 0.00 0.00 0.00 5.01
4645 6620 1.164041 AAGGAACAAAGCCACGGTCG 61.164 55.000 0.00 0.00 0.00 4.79
4647 6622 3.249973 GAACAAAGCCACGGTCGCC 62.250 63.158 0.00 0.00 0.00 5.54
4648 6623 3.767630 AACAAAGCCACGGTCGCCT 62.768 57.895 0.00 0.00 0.00 5.52
4649 6624 2.978010 CAAAGCCACGGTCGCCTT 60.978 61.111 0.00 0.00 0.00 4.35
4650 6625 2.203294 AAAGCCACGGTCGCCTTT 60.203 55.556 0.00 0.00 0.00 3.11
4654 6629 2.593436 CCACGGTCGCCTTTGGTT 60.593 61.111 0.00 0.00 0.00 3.67
4656 6631 0.885596 CCACGGTCGCCTTTGGTTAA 60.886 55.000 0.00 0.00 0.00 2.01
4658 6633 1.069500 CACGGTCGCCTTTGGTTAAAG 60.069 52.381 0.00 0.00 42.34 1.85
4660 6635 2.081462 CGGTCGCCTTTGGTTAAAGAT 58.919 47.619 1.58 0.00 44.87 2.40
4661 6636 3.264104 CGGTCGCCTTTGGTTAAAGATA 58.736 45.455 1.58 0.00 44.87 1.98
4662 6637 3.063045 CGGTCGCCTTTGGTTAAAGATAC 59.937 47.826 1.58 0.00 44.87 2.24
4663 6638 4.004982 GGTCGCCTTTGGTTAAAGATACA 58.995 43.478 1.58 0.00 44.87 2.29
4664 6639 4.456566 GGTCGCCTTTGGTTAAAGATACAA 59.543 41.667 1.58 0.00 44.87 2.41
4667 7008 7.088272 GTCGCCTTTGGTTAAAGATACAAATT 58.912 34.615 1.58 0.00 44.87 1.82
4670 7011 9.413048 CGCCTTTGGTTAAAGATACAAATTAAA 57.587 29.630 1.58 0.00 44.87 1.52
4684 7025 9.237846 GATACAAATTAAAGCAGACAAATAGCC 57.762 33.333 0.00 0.00 0.00 3.93
4685 7026 6.092748 ACAAATTAAAGCAGACAAATAGCCG 58.907 36.000 0.00 0.00 0.00 5.52
4687 7028 6.509418 AATTAAAGCAGACAAATAGCCGAA 57.491 33.333 0.00 0.00 0.00 4.30
4693 7034 3.375299 GCAGACAAATAGCCGAAAGACAT 59.625 43.478 0.00 0.00 0.00 3.06
4695 7036 4.034510 CAGACAAATAGCCGAAAGACATCC 59.965 45.833 0.00 0.00 0.00 3.51
4701 7042 1.003580 AGCCGAAAGACATCCATGTGT 59.996 47.619 0.00 0.00 41.95 3.72
4702 7043 1.812571 GCCGAAAGACATCCATGTGTT 59.187 47.619 0.00 0.00 44.86 3.32
4707 7048 3.928727 AAGACATCCATGTGTTTGCAG 57.071 42.857 0.00 0.00 40.84 4.41
4708 7049 1.542915 AGACATCCATGTGTTTGCAGC 59.457 47.619 0.00 0.00 41.95 5.25
4716 7057 2.495409 TGTGTTTGCAGCACAGATTG 57.505 45.000 18.28 0.00 41.32 2.67
4730 7071 5.618056 CACAGATTGCATGTCAAGTACTT 57.382 39.130 1.12 1.12 38.22 2.24
4734 7075 5.583854 CAGATTGCATGTCAAGTACTTAGCT 59.416 40.000 8.04 0.00 38.22 3.32
4735 7076 5.583854 AGATTGCATGTCAAGTACTTAGCTG 59.416 40.000 8.04 5.21 38.22 4.24
4775 7527 4.387598 CAGGGCTTTCTATCCTCATCTTG 58.612 47.826 0.00 0.00 0.00 3.02
4776 7528 3.145286 GGGCTTTCTATCCTCATCTTGC 58.855 50.000 0.00 0.00 0.00 4.01
4793 7545 3.611433 GCAGAACGCAATCATCCAC 57.389 52.632 0.00 0.00 41.79 4.02
4794 7546 1.089920 GCAGAACGCAATCATCCACT 58.910 50.000 0.00 0.00 41.79 4.00
4795 7547 1.063174 GCAGAACGCAATCATCCACTC 59.937 52.381 0.00 0.00 41.79 3.51
4796 7548 2.349590 CAGAACGCAATCATCCACTCA 58.650 47.619 0.00 0.00 0.00 3.41
4797 7549 2.941064 CAGAACGCAATCATCCACTCAT 59.059 45.455 0.00 0.00 0.00 2.90
4798 7550 3.002042 CAGAACGCAATCATCCACTCATC 59.998 47.826 0.00 0.00 0.00 2.92
4799 7551 2.996249 ACGCAATCATCCACTCATCT 57.004 45.000 0.00 0.00 0.00 2.90
4800 7552 2.831333 ACGCAATCATCCACTCATCTC 58.169 47.619 0.00 0.00 0.00 2.75
4801 7553 2.141517 CGCAATCATCCACTCATCTCC 58.858 52.381 0.00 0.00 0.00 3.71
4802 7554 2.484241 CGCAATCATCCACTCATCTCCA 60.484 50.000 0.00 0.00 0.00 3.86
4803 7555 3.139850 GCAATCATCCACTCATCTCCAG 58.860 50.000 0.00 0.00 0.00 3.86
4804 7556 3.181457 GCAATCATCCACTCATCTCCAGA 60.181 47.826 0.00 0.00 0.00 3.86
4805 7557 4.633175 CAATCATCCACTCATCTCCAGAG 58.367 47.826 0.00 0.00 39.04 3.35
4806 7558 2.037901 TCATCCACTCATCTCCAGAGC 58.962 52.381 0.00 0.00 36.58 4.09
4807 7559 2.040939 CATCCACTCATCTCCAGAGCT 58.959 52.381 0.00 0.00 36.58 4.09
4808 7560 2.244486 TCCACTCATCTCCAGAGCTT 57.756 50.000 0.00 0.00 36.58 3.74
4809 7561 2.106566 TCCACTCATCTCCAGAGCTTC 58.893 52.381 0.00 0.00 36.58 3.86
4810 7562 1.138661 CCACTCATCTCCAGAGCTTCC 59.861 57.143 0.00 0.00 36.58 3.46
4811 7563 1.829849 CACTCATCTCCAGAGCTTCCA 59.170 52.381 0.00 0.00 36.58 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.902681 TCTCTATATATTGGCATGCGTACC 58.097 41.667 12.44 0.00 0.00 3.34
128 129 2.029470 CAGGCCACATAGCTAGCTACTC 60.029 54.545 26.41 12.91 0.00 2.59
200 209 4.839121 TCCACGTAGCCATTTAAATGTCT 58.161 39.130 23.24 19.46 34.60 3.41
207 216 4.500887 GCATAGTCTCCACGTAGCCATTTA 60.501 45.833 0.00 0.00 0.00 1.40
425 2134 2.069273 CCTGCTTTACCACGTCAGAAG 58.931 52.381 0.13 0.00 0.00 2.85
469 2182 5.752892 TTTGCTGTTAACACCGTCAAATA 57.247 34.783 3.59 0.00 0.00 1.40
565 2278 8.803235 GTTCTTAAAATCTGGTTCCCTATTTGT 58.197 33.333 0.00 0.00 0.00 2.83
591 2304 3.555966 AGAGAATTCCTTATTTGGCCCG 58.444 45.455 0.00 0.00 0.00 6.13
615 2328 1.747355 CTTGGGCTGGACTTATGCTTG 59.253 52.381 0.00 0.00 0.00 4.01
616 2329 1.341383 CCTTGGGCTGGACTTATGCTT 60.341 52.381 0.00 0.00 0.00 3.91
617 2330 0.257039 CCTTGGGCTGGACTTATGCT 59.743 55.000 0.00 0.00 0.00 3.79
618 2331 0.034089 ACCTTGGGCTGGACTTATGC 60.034 55.000 0.00 0.00 0.00 3.14
619 2332 2.514458 AACCTTGGGCTGGACTTATG 57.486 50.000 0.00 0.00 0.00 1.90
620 2333 4.341487 GTTAAACCTTGGGCTGGACTTAT 58.659 43.478 0.00 0.00 0.00 1.73
621 2334 3.758425 GTTAAACCTTGGGCTGGACTTA 58.242 45.455 0.00 0.00 0.00 2.24
622 2335 2.594131 GTTAAACCTTGGGCTGGACTT 58.406 47.619 0.00 0.00 0.00 3.01
623 2336 1.544759 CGTTAAACCTTGGGCTGGACT 60.545 52.381 0.00 0.00 0.00 3.85
624 2337 0.879090 CGTTAAACCTTGGGCTGGAC 59.121 55.000 0.00 0.00 0.00 4.02
625 2338 0.891904 GCGTTAAACCTTGGGCTGGA 60.892 55.000 0.00 0.00 0.00 3.86
640 2353 3.428746 TTGCTACAAAACACATGCGTT 57.571 38.095 0.00 0.00 0.00 4.84
661 2374 9.561069 AGCGTCACCTCTCATTAAAAATATATT 57.439 29.630 0.00 0.00 0.00 1.28
663 2376 8.958119 AAGCGTCACCTCTCATTAAAAATATA 57.042 30.769 0.00 0.00 0.00 0.86
665 2378 7.681939 AAAGCGTCACCTCTCATTAAAAATA 57.318 32.000 0.00 0.00 0.00 1.40
666 2379 6.575162 AAAGCGTCACCTCTCATTAAAAAT 57.425 33.333 0.00 0.00 0.00 1.82
667 2380 6.385649 AAAAGCGTCACCTCTCATTAAAAA 57.614 33.333 0.00 0.00 0.00 1.94
670 2383 5.584649 CCATAAAAGCGTCACCTCTCATTAA 59.415 40.000 0.00 0.00 0.00 1.40
675 2391 2.973945 ACCATAAAAGCGTCACCTCTC 58.026 47.619 0.00 0.00 0.00 3.20
690 2406 5.864418 AACACTCGCCTCTATAAACCATA 57.136 39.130 0.00 0.00 0.00 2.74
714 2430 9.537192 CACGATAACACTAATATCACCCTAAAA 57.463 33.333 0.00 0.00 31.47 1.52
716 2432 8.241497 ACACGATAACACTAATATCACCCTAA 57.759 34.615 0.00 0.00 31.47 2.69
717 2433 7.828508 ACACGATAACACTAATATCACCCTA 57.171 36.000 0.00 0.00 31.47 3.53
718 2434 6.726490 ACACGATAACACTAATATCACCCT 57.274 37.500 0.00 0.00 31.47 4.34
719 2435 7.781548 AAACACGATAACACTAATATCACCC 57.218 36.000 0.00 0.00 31.47 4.61
720 2436 9.525409 AGTAAACACGATAACACTAATATCACC 57.475 33.333 0.00 0.00 31.47 4.02
742 2458 9.790389 AAAATGTGACGTGATTTGTTTTAGTAA 57.210 25.926 0.00 0.00 0.00 2.24
800 2516 2.461695 TGGTGTTTTCCTTTTCTGCCA 58.538 42.857 0.00 0.00 0.00 4.92
816 2532 2.554032 GACTCTTGTGGGTGAAATGGTG 59.446 50.000 0.00 0.00 0.00 4.17
862 2578 3.367703 GGTTTGCAGATTTGGTGGAGATG 60.368 47.826 0.00 0.00 0.00 2.90
895 2612 2.440247 CGGTGATTTGGGGGAGCC 60.440 66.667 0.00 0.00 0.00 4.70
917 2634 3.418744 GAGCTCGGGAGAAGCGGTC 62.419 68.421 0.00 0.00 39.18 4.79
921 2647 0.107459 AATTGGAGCTCGGGAGAAGC 60.107 55.000 7.83 0.00 39.18 3.86
1166 2897 0.905337 CGGGAGGAGTTTCCAGAGGT 60.905 60.000 0.00 0.00 39.61 3.85
1395 3144 1.583477 GAAGCAAGGCAGCTCAACC 59.417 57.895 4.92 0.00 45.89 3.77
1486 3235 0.323816 AGACAGAGATCGGTGAGCCA 60.324 55.000 4.54 0.00 34.09 4.75
1528 3277 0.900182 ATGTCACCGAGTCTGCAGGA 60.900 55.000 15.13 0.00 0.00 3.86
1610 3359 5.728471 ACTCTGAGTGGATTACAATGTCAG 58.272 41.667 10.00 0.00 36.06 3.51
1674 3426 3.708544 CCCGGACCCAAGGCGTTA 61.709 66.667 0.73 0.00 0.00 3.18
2055 3807 1.173913 GAATGGAACCCACCTTTCGG 58.826 55.000 0.00 0.00 35.80 4.30
2058 3810 4.772100 CACATAAGAATGGAACCCACCTTT 59.228 41.667 7.46 0.00 35.80 3.11
2065 3817 8.641498 ATGGAATATCACATAAGAATGGAACC 57.359 34.615 0.00 0.00 37.43 3.62
2171 3925 7.765360 TGAGCAAAGACAAACAAATGAGAATTT 59.235 29.630 0.00 0.00 0.00 1.82
2180 3934 5.105797 ACAGACATGAGCAAAGACAAACAAA 60.106 36.000 0.00 0.00 0.00 2.83
2274 4029 6.015350 TGCTCTTATATTCTTTACGGAGGGAG 60.015 42.308 0.00 0.00 0.00 4.30
2275 4030 5.836898 TGCTCTTATATTCTTTACGGAGGGA 59.163 40.000 0.00 0.00 0.00 4.20
2276 4031 6.097915 TGCTCTTATATTCTTTACGGAGGG 57.902 41.667 0.00 0.00 0.00 4.30
2277 4032 8.608844 AAATGCTCTTATATTCTTTACGGAGG 57.391 34.615 0.00 0.00 0.00 4.30
2293 4048 9.593134 CACTAAAGTAGTCATCTAAATGCTCTT 57.407 33.333 0.00 0.00 36.76 2.85
2294 4049 8.972127 TCACTAAAGTAGTCATCTAAATGCTCT 58.028 33.333 0.00 0.00 36.76 4.09
2295 4050 9.757227 ATCACTAAAGTAGTCATCTAAATGCTC 57.243 33.333 0.00 0.00 36.76 4.26
2296 4051 9.757227 GATCACTAAAGTAGTCATCTAAATGCT 57.243 33.333 0.00 0.00 34.00 3.79
2297 4052 9.757227 AGATCACTAAAGTAGTCATCTAAATGC 57.243 33.333 0.48 0.00 43.56 3.56
2303 4058 7.916450 GCGTTTAGATCACTAAAGTAGTCATCT 59.084 37.037 6.96 6.96 46.42 2.90
2304 4059 7.916450 AGCGTTTAGATCACTAAAGTAGTCATC 59.084 37.037 0.00 0.00 45.42 2.92
2305 4060 7.773149 AGCGTTTAGATCACTAAAGTAGTCAT 58.227 34.615 0.00 0.00 45.42 3.06
2306 4061 7.120873 AGAGCGTTTAGATCACTAAAGTAGTCA 59.879 37.037 0.00 0.00 45.42 3.41
2307 4062 7.474190 AGAGCGTTTAGATCACTAAAGTAGTC 58.526 38.462 0.00 0.00 45.42 2.59
2308 4063 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2309 4064 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2325 4080 9.490379 CCCTCTGTAAATAAATATAAGAGCGTT 57.510 33.333 0.00 0.00 0.00 4.84
2326 4081 8.867097 TCCCTCTGTAAATAAATATAAGAGCGT 58.133 33.333 0.00 0.00 0.00 5.07
2327 4082 9.360093 CTCCCTCTGTAAATAAATATAAGAGCG 57.640 37.037 0.00 0.00 0.00 5.03
2334 4089 9.780186 GCAAGTACTCCCTCTGTAAATAAATAT 57.220 33.333 0.00 0.00 0.00 1.28
2335 4090 8.989131 AGCAAGTACTCCCTCTGTAAATAAATA 58.011 33.333 0.00 0.00 0.00 1.40
2336 4091 7.862675 AGCAAGTACTCCCTCTGTAAATAAAT 58.137 34.615 0.00 0.00 0.00 1.40
2337 4092 7.253905 AGCAAGTACTCCCTCTGTAAATAAA 57.746 36.000 0.00 0.00 0.00 1.40
2338 4093 6.869206 AGCAAGTACTCCCTCTGTAAATAA 57.131 37.500 0.00 0.00 0.00 1.40
2339 4094 6.869206 AAGCAAGTACTCCCTCTGTAAATA 57.131 37.500 0.00 0.00 0.00 1.40
2340 4095 5.763876 AAGCAAGTACTCCCTCTGTAAAT 57.236 39.130 0.00 0.00 0.00 1.40
2341 4096 5.163237 ACAAAGCAAGTACTCCCTCTGTAAA 60.163 40.000 0.00 0.00 0.00 2.01
2342 4097 4.347000 ACAAAGCAAGTACTCCCTCTGTAA 59.653 41.667 0.00 0.00 0.00 2.41
2343 4098 3.901844 ACAAAGCAAGTACTCCCTCTGTA 59.098 43.478 0.00 0.00 0.00 2.74
2344 4099 2.706190 ACAAAGCAAGTACTCCCTCTGT 59.294 45.455 0.00 0.00 0.00 3.41
2345 4100 3.409026 ACAAAGCAAGTACTCCCTCTG 57.591 47.619 0.00 0.00 0.00 3.35
2346 4101 3.261137 GGTACAAAGCAAGTACTCCCTCT 59.739 47.826 0.00 0.00 41.16 3.69
2347 4102 3.007614 TGGTACAAAGCAAGTACTCCCTC 59.992 47.826 0.00 0.00 41.16 4.30
2348 4103 2.976882 TGGTACAAAGCAAGTACTCCCT 59.023 45.455 0.00 0.00 41.16 4.20
2349 4104 3.072211 GTGGTACAAAGCAAGTACTCCC 58.928 50.000 0.00 0.00 44.16 4.30
2350 4105 3.072211 GGTGGTACAAAGCAAGTACTCC 58.928 50.000 0.00 10.55 44.16 3.85
2351 4106 4.004196 AGGTGGTACAAAGCAAGTACTC 57.996 45.455 0.00 6.82 44.16 2.59
2352 4107 4.432980 AAGGTGGTACAAAGCAAGTACT 57.567 40.909 11.46 0.00 44.16 2.73
2377 4132 3.310774 CGTGCAGCTTCAATGCTAACTAT 59.689 43.478 0.00 0.00 44.17 2.12
2423 4178 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
2424 4179 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
2425 4180 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
2426 4181 4.335594 GGTCATCTATTTTGAAACGGAGGG 59.664 45.833 0.00 0.00 0.00 4.30
2427 4182 4.335594 GGGTCATCTATTTTGAAACGGAGG 59.664 45.833 0.00 0.00 0.00 4.30
2428 4183 4.941263 TGGGTCATCTATTTTGAAACGGAG 59.059 41.667 0.00 0.00 0.00 4.63
2429 4184 4.912586 TGGGTCATCTATTTTGAAACGGA 58.087 39.130 0.00 0.00 0.00 4.69
2430 4185 5.183140 AGTTGGGTCATCTATTTTGAAACGG 59.817 40.000 0.00 0.00 0.00 4.44
2431 4186 6.254281 AGTTGGGTCATCTATTTTGAAACG 57.746 37.500 0.00 0.00 0.00 3.60
2432 4187 7.926018 ACAAAGTTGGGTCATCTATTTTGAAAC 59.074 33.333 0.00 0.00 0.00 2.78
2433 4188 8.017418 ACAAAGTTGGGTCATCTATTTTGAAA 57.983 30.769 0.00 0.00 0.00 2.69
2434 4189 7.595819 ACAAAGTTGGGTCATCTATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
2435 4190 7.942341 AGTACAAAGTTGGGTCATCTATTTTGA 59.058 33.333 0.00 0.00 0.00 2.69
2436 4191 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
2437 4192 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
2438 4193 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
2439 4194 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
2440 4195 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
2441 4196 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
2442 4197 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
2443 4198 7.012989 ACAAAGTTAGTACAAAGTTGGGTCATC 59.987 37.037 0.00 0.00 0.00 2.92
2444 4199 6.831868 ACAAAGTTAGTACAAAGTTGGGTCAT 59.168 34.615 0.00 0.00 0.00 3.06
2445 4200 6.181908 ACAAAGTTAGTACAAAGTTGGGTCA 58.818 36.000 0.00 0.00 0.00 4.02
2446 4201 6.688637 ACAAAGTTAGTACAAAGTTGGGTC 57.311 37.500 0.00 0.00 0.00 4.46
2447 4202 7.341030 AGTACAAAGTTAGTACAAAGTTGGGT 58.659 34.615 6.30 0.00 43.24 4.51
2448 4203 7.797038 AGTACAAAGTTAGTACAAAGTTGGG 57.203 36.000 6.30 0.00 43.24 4.12
2469 4224 8.703743 TGACCCAACTTTGTACTAACTTTAGTA 58.296 33.333 4.98 4.98 43.36 1.82
2470 4225 7.567458 TGACCCAACTTTGTACTAACTTTAGT 58.433 34.615 6.85 6.85 45.39 2.24
2471 4226 8.617290 ATGACCCAACTTTGTACTAACTTTAG 57.383 34.615 0.00 0.00 36.82 1.85
2472 4227 8.434392 AGATGACCCAACTTTGTACTAACTTTA 58.566 33.333 0.00 0.00 0.00 1.85
2473 4228 7.287810 AGATGACCCAACTTTGTACTAACTTT 58.712 34.615 0.00 0.00 0.00 2.66
2474 4229 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
2475 4230 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
2476 4231 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
2477 4232 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
2479 4234 9.449719 CTAAAATAGATGACCCAACTTTGTACT 57.550 33.333 0.00 0.00 0.00 2.73
2480 4235 9.444600 TCTAAAATAGATGACCCAACTTTGTAC 57.555 33.333 0.00 0.00 0.00 2.90
2482 4237 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
2483 4238 7.962918 CGTTCTAAAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 34.22 2.77
2484 4239 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
2485 4240 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
2486 4241 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
2487 4242 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
2488 4243 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
2489 4244 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
2490 4245 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
2491 4246 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
2492 4247 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
2493 4248 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
2494 4249 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
2495 4250 7.068061 ACTACTCCCTCCGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
2496 4251 6.430007 ACTACTCCCTCCGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
2497 4252 6.712179 ACTACTCCCTCCGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
2498 4253 8.773033 ATAACTACTCCCTCCGTTCTAAAATA 57.227 34.615 0.00 0.00 0.00 1.40
2499 4254 7.672122 ATAACTACTCCCTCCGTTCTAAAAT 57.328 36.000 0.00 0.00 0.00 1.82
2500 4255 7.486407 AATAACTACTCCCTCCGTTCTAAAA 57.514 36.000 0.00 0.00 0.00 1.52
2501 4256 7.836183 AGTAATAACTACTCCCTCCGTTCTAAA 59.164 37.037 0.00 0.00 35.90 1.85
2502 4257 7.284034 CAGTAATAACTACTCCCTCCGTTCTAA 59.716 40.741 0.00 0.00 38.92 2.10
2503 4258 6.769822 CAGTAATAACTACTCCCTCCGTTCTA 59.230 42.308 0.00 0.00 38.92 2.10
2504 4259 5.593502 CAGTAATAACTACTCCCTCCGTTCT 59.406 44.000 0.00 0.00 38.92 3.01
2505 4260 5.591877 TCAGTAATAACTACTCCCTCCGTTC 59.408 44.000 0.00 0.00 38.92 3.95
2506 4261 5.513233 TCAGTAATAACTACTCCCTCCGTT 58.487 41.667 0.00 0.00 38.92 4.44
2507 4262 5.121380 TCAGTAATAACTACTCCCTCCGT 57.879 43.478 0.00 0.00 38.92 4.69
2508 4263 5.593502 AGTTCAGTAATAACTACTCCCTCCG 59.406 44.000 0.00 0.00 38.92 4.63
2509 4264 7.231115 CCTAGTTCAGTAATAACTACTCCCTCC 59.769 44.444 0.00 0.00 38.92 4.30
2510 4265 7.997803 TCCTAGTTCAGTAATAACTACTCCCTC 59.002 40.741 0.00 0.00 38.92 4.30
2511 4266 7.880623 TCCTAGTTCAGTAATAACTACTCCCT 58.119 38.462 0.00 0.00 38.92 4.20
2512 4267 8.709272 ATCCTAGTTCAGTAATAACTACTCCC 57.291 38.462 0.00 0.00 38.92 4.30
2575 4330 2.030805 GGACTGCTGGTGTTCATGTTTC 60.031 50.000 0.00 0.00 0.00 2.78
2668 4423 0.534203 TGGCGGTTGGAGAAAGACAC 60.534 55.000 0.00 0.00 0.00 3.67
2707 4464 4.960469 TCCTACGGGTTGATAGAAAGTCAT 59.040 41.667 0.00 0.00 0.00 3.06
2724 4481 1.135083 GGTGGTCAGACATGTCCTACG 60.135 57.143 22.21 8.82 35.83 3.51
2798 4555 1.674359 TCATTCGCCGCCACATTTAT 58.326 45.000 0.00 0.00 0.00 1.40
3092 5009 7.598869 TCGAAATGCAACATATTACCTAGCTAG 59.401 37.037 14.20 14.20 0.00 3.42
3176 5096 1.000955 GACAAGAGGAAGGAAGCGTCA 59.999 52.381 1.14 0.00 0.00 4.35
3177 5097 1.273886 AGACAAGAGGAAGGAAGCGTC 59.726 52.381 0.00 0.00 0.00 5.19
3180 5100 1.003003 AGCAGACAAGAGGAAGGAAGC 59.997 52.381 0.00 0.00 0.00 3.86
3194 5115 7.665561 AATTTTCTGAGAAAGTAGAGCAGAC 57.334 36.000 7.76 0.00 35.54 3.51
3273 5194 3.988976 TCAGGAAGAGGGAGTCAAATG 57.011 47.619 0.00 0.00 0.00 2.32
3352 5273 9.296400 GTATGACACAACAACATTAACAAAAGT 57.704 29.630 0.00 0.00 0.00 2.66
3378 5300 5.373812 ACTATGACCTGAATACTTTGGGG 57.626 43.478 0.00 0.00 0.00 4.96
3666 5588 7.907389 AGTAACTGACTGATGGAAAGTTATCA 58.093 34.615 0.00 0.00 36.87 2.15
3742 5664 6.978080 ACACGTAAAATTTCATGCAAGTTTCT 59.022 30.769 6.78 0.00 0.00 2.52
3793 5715 3.459598 TGCCTTAGCCTTCAGGAACATAT 59.540 43.478 0.00 0.00 38.69 1.78
3831 5772 6.253727 CACCGAAAGAGTATTAGCAACTAGTG 59.746 42.308 0.00 0.00 0.00 2.74
3832 5773 6.071503 ACACCGAAAGAGTATTAGCAACTAGT 60.072 38.462 0.00 0.00 0.00 2.57
3833 5774 6.331061 ACACCGAAAGAGTATTAGCAACTAG 58.669 40.000 0.00 0.00 0.00 2.57
3834 5775 6.071784 TGACACCGAAAGAGTATTAGCAACTA 60.072 38.462 0.00 0.00 0.00 2.24
3835 5776 5.148651 ACACCGAAAGAGTATTAGCAACT 57.851 39.130 0.00 0.00 0.00 3.16
3836 5777 4.927425 TGACACCGAAAGAGTATTAGCAAC 59.073 41.667 0.00 0.00 0.00 4.17
3837 5778 5.142061 TGACACCGAAAGAGTATTAGCAA 57.858 39.130 0.00 0.00 0.00 3.91
3838 5779 4.794278 TGACACCGAAAGAGTATTAGCA 57.206 40.909 0.00 0.00 0.00 3.49
3839 5780 4.927425 TGTTGACACCGAAAGAGTATTAGC 59.073 41.667 0.00 0.00 0.00 3.09
3840 5781 5.062308 GCTGTTGACACCGAAAGAGTATTAG 59.938 44.000 0.00 0.00 0.00 1.73
3841 5782 4.927425 GCTGTTGACACCGAAAGAGTATTA 59.073 41.667 0.00 0.00 0.00 0.98
3842 5783 3.746492 GCTGTTGACACCGAAAGAGTATT 59.254 43.478 0.00 0.00 0.00 1.89
3843 5784 3.244078 TGCTGTTGACACCGAAAGAGTAT 60.244 43.478 0.00 0.00 0.00 2.12
3844 5785 2.101750 TGCTGTTGACACCGAAAGAGTA 59.898 45.455 0.00 0.00 0.00 2.59
3845 5786 1.134521 TGCTGTTGACACCGAAAGAGT 60.135 47.619 0.00 0.00 0.00 3.24
3846 5787 1.261619 GTGCTGTTGACACCGAAAGAG 59.738 52.381 0.00 0.00 31.67 2.85
3847 5788 1.134521 AGTGCTGTTGACACCGAAAGA 60.135 47.619 0.00 0.00 38.87 2.52
3848 5789 1.261619 GAGTGCTGTTGACACCGAAAG 59.738 52.381 0.00 0.00 38.87 2.62
3849 5790 1.134521 AGAGTGCTGTTGACACCGAAA 60.135 47.619 0.00 0.00 38.87 3.46
3850 5791 0.464036 AGAGTGCTGTTGACACCGAA 59.536 50.000 0.00 0.00 38.87 4.30
3851 5792 1.324383 TAGAGTGCTGTTGACACCGA 58.676 50.000 0.00 0.00 38.87 4.69
3852 5793 1.995484 CATAGAGTGCTGTTGACACCG 59.005 52.381 0.00 0.00 38.87 4.94
3940 5881 5.533903 ACAGATGAAACATGAAGCAAGTTCT 59.466 36.000 0.00 0.00 35.99 3.01
3997 5945 2.166254 ACACACCAAAGGCTTGTGAAAG 59.834 45.455 20.64 13.11 34.86 2.62
4020 5968 3.181494 TGAGCATGCCAAGATTCGAATTG 60.181 43.478 15.66 8.28 0.00 2.32
4021 5969 3.018856 TGAGCATGCCAAGATTCGAATT 58.981 40.909 15.66 0.00 0.00 2.17
4024 5972 2.112380 TTGAGCATGCCAAGATTCGA 57.888 45.000 15.66 0.63 0.00 3.71
4048 6018 9.671279 ATGACATAACTTGATGAATTCACTACA 57.329 29.630 11.07 8.82 32.84 2.74
4116 6086 9.161684 CAGTTTCTTGCAAATTTTTAAATGCTC 57.838 29.630 11.62 0.00 0.00 4.26
4130 6100 3.119531 CCACACTGAACAGTTTCTTGCAA 60.120 43.478 4.63 0.00 40.20 4.08
4169 6140 6.435430 TGTAAATACATCATGCAACTGGTC 57.565 37.500 0.00 0.00 0.00 4.02
4206 6177 1.000060 TCTGCCAAACAGCATGAAAGC 60.000 47.619 0.00 0.00 46.76 3.51
4255 6226 5.240891 TCAAGGCTCATGTACTCAAGAAAG 58.759 41.667 0.00 0.00 0.00 2.62
4272 6244 8.498358 CAAATTAGTTTTCCTTCAAATCAAGGC 58.502 33.333 0.00 0.00 42.63 4.35
4299 6271 5.703876 CACAAGGGAAAATAGCTCTGTTTC 58.296 41.667 0.00 0.00 0.00 2.78
4339 6312 8.786826 TCAGAAACAAATCTACCGAAATACAT 57.213 30.769 0.00 0.00 0.00 2.29
4351 6324 8.860780 AAGAGATAAAGCTCAGAAACAAATCT 57.139 30.769 0.00 0.00 37.37 2.40
4414 6389 9.685276 TGCATTATCTTTTCCTTTTCAGAGATA 57.315 29.630 0.00 0.00 0.00 1.98
4551 6526 6.459848 GCATTGTACGTCTAGATACCTTCTGT 60.460 42.308 0.00 0.00 35.79 3.41
4552 6527 5.915758 GCATTGTACGTCTAGATACCTTCTG 59.084 44.000 0.00 0.00 35.79 3.02
4581 6556 2.267188 ATGCTGTTGTTATTGCTGCG 57.733 45.000 0.00 0.00 0.00 5.18
4591 6566 0.311790 CGGTCTGCAAATGCTGTTGT 59.688 50.000 6.97 0.00 42.66 3.32
4597 6572 1.202076 GCTACTTCGGTCTGCAAATGC 60.202 52.381 0.00 0.00 42.50 3.56
4606 6581 2.888594 TGCTTGTATGCTACTTCGGTC 58.111 47.619 0.00 0.00 0.00 4.79
4619 6594 2.360801 GTGGCTTTGTTCCTTGCTTGTA 59.639 45.455 0.00 0.00 0.00 2.41
4640 6615 1.515081 TCTTTAACCAAAGGCGACCG 58.485 50.000 0.00 0.00 41.35 4.79
4658 6633 9.237846 GGCTATTTGTCTGCTTTAATTTGTATC 57.762 33.333 0.00 0.00 0.00 2.24
4660 6635 7.119992 TCGGCTATTTGTCTGCTTTAATTTGTA 59.880 33.333 0.00 0.00 0.00 2.41
4661 6636 6.072175 TCGGCTATTTGTCTGCTTTAATTTGT 60.072 34.615 0.00 0.00 0.00 2.83
4662 6637 6.321717 TCGGCTATTTGTCTGCTTTAATTTG 58.678 36.000 0.00 0.00 0.00 2.32
4663 6638 6.509418 TCGGCTATTTGTCTGCTTTAATTT 57.491 33.333 0.00 0.00 0.00 1.82
4664 6639 6.509418 TTCGGCTATTTGTCTGCTTTAATT 57.491 33.333 0.00 0.00 0.00 1.40
4667 7008 5.121768 GTCTTTCGGCTATTTGTCTGCTTTA 59.878 40.000 0.00 0.00 0.00 1.85
4670 7011 3.003480 GTCTTTCGGCTATTTGTCTGCT 58.997 45.455 0.00 0.00 0.00 4.24
4672 7013 4.034510 GGATGTCTTTCGGCTATTTGTCTG 59.965 45.833 0.00 0.00 0.00 3.51
4673 7014 4.192317 GGATGTCTTTCGGCTATTTGTCT 58.808 43.478 0.00 0.00 0.00 3.41
4674 7015 3.938963 TGGATGTCTTTCGGCTATTTGTC 59.061 43.478 0.00 0.00 0.00 3.18
4678 7019 3.879295 CACATGGATGTCTTTCGGCTATT 59.121 43.478 0.00 0.00 39.39 1.73
4679 7020 3.118261 ACACATGGATGTCTTTCGGCTAT 60.118 43.478 0.00 0.00 39.39 2.97
4680 7021 2.236146 ACACATGGATGTCTTTCGGCTA 59.764 45.455 0.00 0.00 39.39 3.93
4683 7024 3.825308 CAAACACATGGATGTCTTTCGG 58.175 45.455 0.00 0.00 39.39 4.30
4684 7025 3.236816 GCAAACACATGGATGTCTTTCG 58.763 45.455 0.00 0.00 39.39 3.46
4685 7026 4.232221 CTGCAAACACATGGATGTCTTTC 58.768 43.478 0.00 0.00 39.39 2.62
4687 7028 2.029649 GCTGCAAACACATGGATGTCTT 60.030 45.455 0.00 0.00 39.39 3.01
4693 7034 0.669619 CTGTGCTGCAAACACATGGA 59.330 50.000 19.33 1.06 46.32 3.41
4695 7036 2.717580 ATCTGTGCTGCAAACACATG 57.282 45.000 19.33 14.19 46.32 3.21
4708 7049 5.618056 AAGTACTTGACATGCAATCTGTG 57.382 39.130 7.48 0.00 35.59 3.66
4711 7052 5.583854 CAGCTAAGTACTTGACATGCAATCT 59.416 40.000 18.56 0.00 35.59 2.40
4712 7053 5.352569 ACAGCTAAGTACTTGACATGCAATC 59.647 40.000 18.56 0.00 35.59 2.67
4713 7054 5.248640 ACAGCTAAGTACTTGACATGCAAT 58.751 37.500 18.56 4.58 35.59 3.56
4714 7055 4.641396 ACAGCTAAGTACTTGACATGCAA 58.359 39.130 18.56 0.00 34.73 4.08
4715 7056 4.271696 ACAGCTAAGTACTTGACATGCA 57.728 40.909 18.56 0.00 0.00 3.96
4716 7057 5.220491 GCTAACAGCTAAGTACTTGACATGC 60.220 44.000 18.56 13.14 38.45 4.06
4717 7058 6.337853 GCTAACAGCTAAGTACTTGACATG 57.662 41.667 18.56 12.96 38.45 3.21
4744 7496 1.748500 GAAAGCCCTGGAGCTGAGC 60.749 63.158 9.92 0.00 44.11 4.26
4775 7527 1.063174 GAGTGGATGATTGCGTTCTGC 59.937 52.381 0.00 0.00 46.70 4.26
4776 7528 2.349590 TGAGTGGATGATTGCGTTCTG 58.650 47.619 0.00 0.00 0.00 3.02
4789 7541 2.106566 GAAGCTCTGGAGATGAGTGGA 58.893 52.381 1.35 0.00 34.30 4.02
4790 7542 1.138661 GGAAGCTCTGGAGATGAGTGG 59.861 57.143 1.35 0.00 34.30 4.00
4791 7543 1.829849 TGGAAGCTCTGGAGATGAGTG 59.170 52.381 1.35 0.00 34.30 3.51
4792 7544 2.244486 TGGAAGCTCTGGAGATGAGT 57.756 50.000 1.35 0.00 34.30 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.