Multiple sequence alignment - TraesCS3D01G121700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G121700 chr3D 100.000 3691 0 0 1 3691 79426916 79430606 0.000000e+00 6817.0
1 TraesCS3D01G121700 chr3D 90.442 1517 107 20 1150 2662 79504249 79505731 0.000000e+00 1964.0
2 TraesCS3D01G121700 chr3D 89.986 1388 118 10 1147 2525 79421376 79420001 0.000000e+00 1773.0
3 TraesCS3D01G121700 chr3D 95.000 60 3 0 816 875 79503945 79504004 1.090000e-15 95.3
4 TraesCS3D01G121700 chr3B 89.861 3018 220 40 10 3010 125550687 125553635 0.000000e+00 3799.0
5 TraesCS3D01G121700 chr3B 87.227 1785 147 47 904 2662 125778727 125780456 0.000000e+00 1958.0
6 TraesCS3D01G121700 chr3B 90.455 1341 116 5 1147 2487 125524360 125523032 0.000000e+00 1757.0
7 TraesCS3D01G121700 chr3B 83.094 834 89 10 2433 3262 125592890 125593675 0.000000e+00 712.0
8 TraesCS3D01G121700 chr3B 81.499 427 56 13 3264 3690 125571637 125572040 2.750000e-86 329.0
9 TraesCS3D01G121700 chr3B 85.841 226 28 2 3005 3227 125555917 125556141 1.710000e-58 237.0
10 TraesCS3D01G121700 chr3B 91.667 60 5 0 816 875 125778663 125778722 2.360000e-12 84.2
11 TraesCS3D01G121700 chr3A 87.855 2569 194 60 10 2530 93262618 93265116 0.000000e+00 2907.0
12 TraesCS3D01G121700 chr3A 88.560 2063 144 40 464 2502 93336703 93338697 0.000000e+00 2418.0
13 TraesCS3D01G121700 chr3A 90.604 1341 114 5 1147 2487 93042878 93041550 0.000000e+00 1768.0
14 TraesCS3D01G121700 chr3A 84.724 707 96 11 2562 3263 93338769 93339468 0.000000e+00 697.0
15 TraesCS3D01G121700 chr3A 92.857 350 22 2 2215 2564 93265663 93266009 4.250000e-139 505.0
16 TraesCS3D01G121700 chr3A 91.228 171 10 4 2558 2726 93309892 93310059 1.030000e-55 228.0
17 TraesCS3D01G121700 chr3A 92.784 97 7 0 2722 2818 93319510 93319606 1.380000e-29 141.0
18 TraesCS3D01G121700 chr1A 81.081 851 136 17 1608 2453 129004474 129003644 0.000000e+00 656.0
19 TraesCS3D01G121700 chr1A 73.363 443 84 24 1179 1612 129004984 129004567 2.310000e-27 134.0
20 TraesCS3D01G121700 chr6A 92.683 41 3 0 2748 2788 520879760 520879720 3.980000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G121700 chr3D 79426916 79430606 3690 False 6817.00 6817 100.000 1 3691 1 chr3D.!!$F1 3690
1 TraesCS3D01G121700 chr3D 79420001 79421376 1375 True 1773.00 1773 89.986 1147 2525 1 chr3D.!!$R1 1378
2 TraesCS3D01G121700 chr3D 79503945 79505731 1786 False 1029.65 1964 92.721 816 2662 2 chr3D.!!$F2 1846
3 TraesCS3D01G121700 chr3B 125550687 125556141 5454 False 2018.00 3799 87.851 10 3227 2 chr3B.!!$F3 3217
4 TraesCS3D01G121700 chr3B 125523032 125524360 1328 True 1757.00 1757 90.455 1147 2487 1 chr3B.!!$R1 1340
5 TraesCS3D01G121700 chr3B 125778663 125780456 1793 False 1021.10 1958 89.447 816 2662 2 chr3B.!!$F4 1846
6 TraesCS3D01G121700 chr3B 125592890 125593675 785 False 712.00 712 83.094 2433 3262 1 chr3B.!!$F2 829
7 TraesCS3D01G121700 chr3A 93041550 93042878 1328 True 1768.00 1768 90.604 1147 2487 1 chr3A.!!$R1 1340
8 TraesCS3D01G121700 chr3A 93262618 93266009 3391 False 1706.00 2907 90.356 10 2564 2 chr3A.!!$F3 2554
9 TraesCS3D01G121700 chr3A 93336703 93339468 2765 False 1557.50 2418 86.642 464 3263 2 chr3A.!!$F4 2799
10 TraesCS3D01G121700 chr1A 129003644 129004984 1340 True 395.00 656 77.222 1179 2453 2 chr1A.!!$R1 1274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 1049 0.178981 AACTCCAGCACCAACAGCAT 60.179 50.0 0.0 0.0 0.00 3.79 F
1122 1179 0.249238 CTACTCCGTCTGCATCCAGC 60.249 60.0 0.0 0.0 45.96 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2256 0.108329 GCAGTTGCCGTAGAAGCCTA 60.108 55.0 0.0 0.0 34.31 3.93 R
3010 5644 0.970937 CGGAGACTGGAGCAAGGGTA 60.971 60.0 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 3.609373 CGGTGTTATGTGTGTAGTTACCG 59.391 47.826 0.00 0.00 41.83 4.02
89 92 1.817099 GTGATGAAGGCTGCTCGGG 60.817 63.158 0.00 0.00 0.00 5.14
92 95 2.932130 GATGAAGGCTGCTCGGGGTC 62.932 65.000 0.00 0.00 0.00 4.46
122 125 4.767409 GGCTTGATCTTTAGGGTGAAAACT 59.233 41.667 0.00 0.00 0.00 2.66
126 129 5.935945 TGATCTTTAGGGTGAAAACTCACA 58.064 37.500 7.51 0.00 42.07 3.58
129 132 7.505585 TGATCTTTAGGGTGAAAACTCACAATT 59.494 33.333 7.51 0.00 42.07 2.32
139 142 4.568152 AAACTCACAATTTGACCTTCGG 57.432 40.909 2.79 0.00 0.00 4.30
151 154 1.829222 GACCTTCGGTAGTTGGATCCA 59.171 52.381 11.44 11.44 35.25 3.41
177 180 2.653130 GGCGCTTGCGCATCATTC 60.653 61.111 34.83 17.04 40.46 2.67
182 185 0.248784 GCTTGCGCATCATTCCCTTC 60.249 55.000 12.75 0.00 35.78 3.46
263 270 0.396435 TGATGGTCACCACTGTCACC 59.604 55.000 0.00 0.00 35.80 4.02
279 286 4.888917 TGTCACCGTATTTCATCACTTCA 58.111 39.130 0.00 0.00 0.00 3.02
280 287 4.929211 TGTCACCGTATTTCATCACTTCAG 59.071 41.667 0.00 0.00 0.00 3.02
281 288 4.330074 GTCACCGTATTTCATCACTTCAGG 59.670 45.833 0.00 0.00 0.00 3.86
282 289 4.221924 TCACCGTATTTCATCACTTCAGGA 59.778 41.667 0.00 0.00 0.00 3.86
361 368 1.234821 TGCCGGTGTGATCTTTTGTC 58.765 50.000 1.90 0.00 0.00 3.18
365 372 2.480419 CCGGTGTGATCTTTTGTCTGTC 59.520 50.000 0.00 0.00 0.00 3.51
384 391 0.385473 CGGTTCGTTGTGTGCATTCC 60.385 55.000 0.00 0.00 0.00 3.01
400 407 3.633525 GCATTCCAATTATGCAGAGGTCA 59.366 43.478 6.77 0.00 45.93 4.02
417 424 7.255625 GCAGAGGTCAGATGTGTACTCATTATA 60.256 40.741 11.49 0.00 33.04 0.98
494 519 3.130340 AGTGTTTTTGCCACCAACTACAG 59.870 43.478 0.00 0.00 33.20 2.74
607 632 1.343465 CTGTAACCAGAGGGAACACGT 59.657 52.381 0.00 0.00 41.50 4.49
673 698 6.017605 GTCAAGACGATCTGCAATGGAAATAT 60.018 38.462 0.00 0.00 0.00 1.28
686 711 2.365941 TGGAAATATGCCGATGGACGTA 59.634 45.455 0.00 0.00 40.78 3.57
687 712 2.735134 GGAAATATGCCGATGGACGTAC 59.265 50.000 0.00 0.00 40.78 3.67
688 713 3.554337 GGAAATATGCCGATGGACGTACT 60.554 47.826 0.00 0.00 40.78 2.73
689 714 3.746045 AATATGCCGATGGACGTACTT 57.254 42.857 0.00 0.00 40.78 2.24
690 715 2.502213 TATGCCGATGGACGTACTTG 57.498 50.000 0.00 0.00 40.78 3.16
691 716 0.179084 ATGCCGATGGACGTACTTGG 60.179 55.000 0.00 0.00 40.78 3.61
692 717 1.252215 TGCCGATGGACGTACTTGGA 61.252 55.000 0.00 0.00 40.78 3.53
693 718 0.527817 GCCGATGGACGTACTTGGAG 60.528 60.000 0.00 0.00 40.78 3.86
694 719 0.815734 CCGATGGACGTACTTGGAGT 59.184 55.000 0.00 0.00 40.78 3.85
695 720 1.203994 CCGATGGACGTACTTGGAGTT 59.796 52.381 0.00 0.00 40.78 3.01
696 721 2.259618 CGATGGACGTACTTGGAGTTG 58.740 52.381 0.00 0.00 37.22 3.16
697 722 2.352421 CGATGGACGTACTTGGAGTTGT 60.352 50.000 0.00 0.00 37.22 3.32
698 723 3.660865 GATGGACGTACTTGGAGTTGTT 58.339 45.455 0.00 0.00 0.00 2.83
699 724 4.616604 CGATGGACGTACTTGGAGTTGTTA 60.617 45.833 0.00 0.00 37.22 2.41
700 725 4.247267 TGGACGTACTTGGAGTTGTTAG 57.753 45.455 0.00 0.00 0.00 2.34
701 726 3.006110 TGGACGTACTTGGAGTTGTTAGG 59.994 47.826 0.00 0.00 0.00 2.69
702 727 3.582780 GACGTACTTGGAGTTGTTAGGG 58.417 50.000 0.00 0.00 0.00 3.53
703 728 3.233507 ACGTACTTGGAGTTGTTAGGGA 58.766 45.455 0.00 0.00 0.00 4.20
704 729 3.257624 ACGTACTTGGAGTTGTTAGGGAG 59.742 47.826 0.00 0.00 0.00 4.30
705 730 3.257624 CGTACTTGGAGTTGTTAGGGAGT 59.742 47.826 0.00 0.00 0.00 3.85
991 1046 1.160137 GCTAACTCCAGCACCAACAG 58.840 55.000 0.00 0.00 41.40 3.16
993 1048 0.472044 TAACTCCAGCACCAACAGCA 59.528 50.000 0.00 0.00 0.00 4.41
994 1049 0.178981 AACTCCAGCACCAACAGCAT 60.179 50.000 0.00 0.00 0.00 3.79
995 1050 0.692476 ACTCCAGCACCAACAGCATA 59.308 50.000 0.00 0.00 0.00 3.14
996 1051 1.073763 ACTCCAGCACCAACAGCATAA 59.926 47.619 0.00 0.00 0.00 1.90
997 1052 2.161855 CTCCAGCACCAACAGCATAAA 58.838 47.619 0.00 0.00 0.00 1.40
1017 1072 1.065358 CCCTATAAATACCACGCGCG 58.935 55.000 30.96 30.96 0.00 6.86
1073 1130 0.752054 CAAACCAAGCCAAGCAAGGA 59.248 50.000 0.00 0.00 0.00 3.36
1074 1131 1.043022 AAACCAAGCCAAGCAAGGAG 58.957 50.000 0.00 0.00 0.00 3.69
1075 1132 1.466851 AACCAAGCCAAGCAAGGAGC 61.467 55.000 0.00 0.00 46.19 4.70
1101 1158 3.126000 GCCAAGCAAGCTTACTAAGACTG 59.874 47.826 7.03 0.00 34.50 3.51
1110 1167 4.877251 AGCTTACTAAGACTGTCTACTCCG 59.123 45.833 11.30 1.05 0.00 4.63
1121 1178 1.066303 GTCTACTCCGTCTGCATCCAG 59.934 57.143 0.00 0.00 40.54 3.86
1122 1179 0.249238 CTACTCCGTCTGCATCCAGC 60.249 60.000 0.00 0.00 45.96 4.85
1131 1188 2.903855 GCATCCAGCATCCACCGG 60.904 66.667 0.00 0.00 44.79 5.28
1138 1195 0.606401 CAGCATCCACCGGTCACTTT 60.606 55.000 2.59 0.00 0.00 2.66
1285 1374 3.021788 GCGCTCATCGAGTCGCTC 61.022 66.667 18.72 0.00 44.73 5.03
1537 1629 1.701292 CTGGAGCACCCCATGATGATA 59.299 52.381 0.00 0.00 35.33 2.15
1927 2125 2.202905 TCGTGGTGTTCGGCGTTT 60.203 55.556 6.85 0.00 0.00 3.60
2152 2350 1.407618 CCCGACGTGGTGAAGATCATA 59.592 52.381 0.00 0.00 35.15 2.15
2188 2386 1.446099 GATGCCGTCAGAGTTCGCA 60.446 57.895 0.00 0.00 0.00 5.10
2269 2467 2.361483 TACCGGACGCTGCTGGTA 60.361 61.111 9.46 8.78 45.58 3.25
2317 2515 3.001406 GTGGACTACGGCTGGGGT 61.001 66.667 0.00 0.00 0.00 4.95
2425 2623 2.103042 GCTCATCACCCAGTGCGTC 61.103 63.158 0.00 0.00 32.98 5.19
2658 2925 4.543590 TTGATCCTGACTTTGAGGAGTC 57.456 45.455 0.00 0.00 43.02 3.36
2672 2942 1.821753 AGGAGTCGATCAGGACTTGTG 59.178 52.381 4.95 0.00 46.85 3.33
2676 2946 1.728971 GTCGATCAGGACTTGTGCAAG 59.271 52.381 10.09 10.09 43.79 4.01
2755 3025 9.434275 TCTCCATATCAAGGTGTCTAATTAAGA 57.566 33.333 0.00 0.00 0.00 2.10
2756 3026 9.703892 CTCCATATCAAGGTGTCTAATTAAGAG 57.296 37.037 0.00 0.00 33.88 2.85
2816 3088 2.281139 GCATCCCCTCTAAGCGCC 60.281 66.667 2.29 0.00 0.00 6.53
2845 3117 1.248101 CGGTTCACCAAATGTCCCCC 61.248 60.000 0.00 0.00 35.14 5.40
2891 3235 4.591852 TTTTTGCCGTACAACGCG 57.408 50.000 3.53 3.53 40.91 6.01
2893 3237 2.319011 TTTTTGCCGTACAACGCGCA 62.319 50.000 5.73 10.21 42.68 6.09
2908 3255 1.431496 GCGCAGGCATCAATTTTGTT 58.569 45.000 0.30 0.00 39.62 2.83
2913 3260 3.860378 GCAGGCATCAATTTTGTTCGGAA 60.860 43.478 0.00 0.00 0.00 4.30
2957 3304 2.094752 CCAAATGTAGGGAAGGTTTGCG 60.095 50.000 0.00 0.00 0.00 4.85
2987 3334 2.282674 TCCACCACGTACGCCTCT 60.283 61.111 16.72 0.00 0.00 3.69
3002 3349 1.228124 CTCTGAAAACGTGGGCCCA 60.228 57.895 24.45 24.45 0.00 5.36
3010 5644 0.039035 AACGTGGGCCCACATACAAT 59.961 50.000 45.40 25.58 46.47 2.71
3012 5646 1.305201 CGTGGGCCCACATACAATAC 58.695 55.000 45.40 22.42 46.47 1.89
3030 5664 2.286523 CCCTTGCTCCAGTCTCCGT 61.287 63.158 0.00 0.00 0.00 4.69
3032 5666 1.536073 CCTTGCTCCAGTCTCCGTGA 61.536 60.000 0.00 0.00 0.00 4.35
3081 5715 2.573689 GAGCCGAACGAGACGACG 60.574 66.667 0.00 0.00 39.31 5.12
3090 5724 2.129823 ACGAGACGACGTGATGTTTT 57.870 45.000 4.58 0.00 44.84 2.43
3098 5732 3.259064 CGACGTGATGTTTTCCCTACAT 58.741 45.455 0.00 0.00 38.86 2.29
3167 5804 2.974698 GCTAGCCGCGGATGCAAT 60.975 61.111 33.48 9.03 42.97 3.56
3184 5821 0.759346 AATCCCTACACCATCGCCTC 59.241 55.000 0.00 0.00 0.00 4.70
3191 5828 1.270907 ACACCATCGCCTCTCTTCTT 58.729 50.000 0.00 0.00 0.00 2.52
3198 5835 2.248248 TCGCCTCTCTTCTTTTCTCCA 58.752 47.619 0.00 0.00 0.00 3.86
3210 5847 5.324832 TCTTTTCTCCACTCCCAAAATCT 57.675 39.130 0.00 0.00 0.00 2.40
3216 5853 1.272092 CCACTCCCAAAATCTGCTCCA 60.272 52.381 0.00 0.00 0.00 3.86
3238 5875 2.510238 GCAAGGCAGCGTCTCGAT 60.510 61.111 0.00 0.00 0.00 3.59
3239 5876 1.226974 GCAAGGCAGCGTCTCGATA 60.227 57.895 0.00 0.00 0.00 2.92
3263 5900 3.246112 TCCACAACCTCCACGGGG 61.246 66.667 0.00 0.00 36.97 5.73
3265 5902 3.953775 CACAACCTCCACGGGGCT 61.954 66.667 0.00 0.00 36.97 5.19
3266 5903 3.637273 ACAACCTCCACGGGGCTC 61.637 66.667 0.00 0.00 36.97 4.70
3267 5904 4.410400 CAACCTCCACGGGGCTCC 62.410 72.222 0.00 0.00 36.97 4.70
3280 5917 4.821589 GCTCCCTCGCCGGTGAAG 62.822 72.222 20.06 13.29 0.00 3.02
3281 5918 4.821589 CTCCCTCGCCGGTGAAGC 62.822 72.222 20.06 0.00 0.00 3.86
3291 5928 2.674754 GGTGAAGCCGGATCCCAA 59.325 61.111 5.05 0.00 0.00 4.12
3292 5929 1.001393 GGTGAAGCCGGATCCCAAA 60.001 57.895 5.05 0.00 0.00 3.28
3293 5930 0.395724 GGTGAAGCCGGATCCCAAAT 60.396 55.000 5.05 0.00 0.00 2.32
3294 5931 1.025041 GTGAAGCCGGATCCCAAATC 58.975 55.000 5.05 0.71 0.00 2.17
3295 5932 0.106719 TGAAGCCGGATCCCAAATCC 60.107 55.000 5.05 0.00 34.90 3.01
3296 5933 0.183731 GAAGCCGGATCCCAAATCCT 59.816 55.000 5.05 0.00 36.07 3.24
3297 5934 0.183731 AAGCCGGATCCCAAATCCTC 59.816 55.000 5.05 0.00 36.07 3.71
3298 5935 1.598130 GCCGGATCCCAAATCCTCG 60.598 63.158 5.05 0.00 36.07 4.63
3299 5936 1.071471 CCGGATCCCAAATCCTCGG 59.929 63.158 6.06 0.00 36.07 4.63
3300 5937 1.407656 CCGGATCCCAAATCCTCGGA 61.408 60.000 6.06 0.00 38.42 4.55
3301 5938 0.249911 CGGATCCCAAATCCTCGGAC 60.250 60.000 6.06 0.00 36.07 4.79
3302 5939 1.132500 GGATCCCAAATCCTCGGACT 58.868 55.000 0.00 0.00 35.36 3.85
3303 5940 2.326428 GGATCCCAAATCCTCGGACTA 58.674 52.381 0.00 0.00 35.36 2.59
3304 5941 2.037381 GGATCCCAAATCCTCGGACTAC 59.963 54.545 0.00 0.00 35.36 2.73
3305 5942 2.544844 TCCCAAATCCTCGGACTACT 57.455 50.000 0.00 0.00 0.00 2.57
3306 5943 3.675348 TCCCAAATCCTCGGACTACTA 57.325 47.619 0.00 0.00 0.00 1.82
3307 5944 3.563223 TCCCAAATCCTCGGACTACTAG 58.437 50.000 0.00 0.00 0.00 2.57
3308 5945 2.628657 CCCAAATCCTCGGACTACTAGG 59.371 54.545 0.00 0.00 0.00 3.02
3309 5946 3.563223 CCAAATCCTCGGACTACTAGGA 58.437 50.000 0.00 0.00 43.38 2.94
3310 5947 3.570550 CCAAATCCTCGGACTACTAGGAG 59.429 52.174 0.00 0.00 42.53 3.69
3311 5948 2.572209 ATCCTCGGACTACTAGGAGC 57.428 55.000 0.36 0.00 42.53 4.70
3312 5949 1.210538 TCCTCGGACTACTAGGAGCA 58.789 55.000 0.36 0.00 34.46 4.26
3313 5950 1.141254 TCCTCGGACTACTAGGAGCAG 59.859 57.143 0.36 0.00 34.46 4.24
3314 5951 1.600023 CTCGGACTACTAGGAGCAGG 58.400 60.000 0.36 0.00 0.00 4.85
3315 5952 1.141254 CTCGGACTACTAGGAGCAGGA 59.859 57.143 0.36 0.00 0.00 3.86
3316 5953 1.141254 TCGGACTACTAGGAGCAGGAG 59.859 57.143 0.36 0.00 32.21 3.69
3317 5954 1.324383 GGACTACTAGGAGCAGGAGC 58.676 60.000 0.36 0.00 42.56 4.70
3318 5955 1.410365 GGACTACTAGGAGCAGGAGCA 60.410 57.143 0.36 0.00 45.49 4.26
3319 5956 1.953686 GACTACTAGGAGCAGGAGCAG 59.046 57.143 0.36 0.00 45.49 4.24
3320 5957 0.673437 CTACTAGGAGCAGGAGCAGC 59.327 60.000 0.00 0.00 45.49 5.25
3321 5958 0.757188 TACTAGGAGCAGGAGCAGCC 60.757 60.000 0.00 0.00 45.49 4.85
3322 5959 3.149338 CTAGGAGCAGGAGCAGCCG 62.149 68.421 0.00 0.00 45.49 5.52
3331 5968 4.925861 GAGCAGCCGCCCATCCTC 62.926 72.222 0.00 0.00 39.83 3.71
3336 5973 4.467084 GCCGCCCATCCTCACGAA 62.467 66.667 0.00 0.00 0.00 3.85
3337 5974 2.202932 CCGCCCATCCTCACGAAG 60.203 66.667 0.00 0.00 0.00 3.79
3339 5976 2.514824 GCCCATCCTCACGAAGGC 60.515 66.667 0.00 0.00 45.78 4.35
3340 5977 2.190578 CCCATCCTCACGAAGGCC 59.809 66.667 0.00 0.00 45.78 5.19
3341 5978 2.202932 CCATCCTCACGAAGGCCG 60.203 66.667 0.00 0.00 45.78 6.13
3358 5995 2.925352 GTCGCGACGAACAAGCAA 59.075 55.556 25.19 0.00 37.72 3.91
3359 5996 1.491563 GTCGCGACGAACAAGCAAT 59.508 52.632 25.19 0.00 37.72 3.56
3360 5997 0.110823 GTCGCGACGAACAAGCAATT 60.111 50.000 25.19 0.00 37.72 2.32
3361 5998 0.584396 TCGCGACGAACAAGCAATTT 59.416 45.000 3.71 0.00 31.06 1.82
3362 5999 0.697010 CGCGACGAACAAGCAATTTG 59.303 50.000 0.00 0.00 42.68 2.32
3363 6000 0.430858 GCGACGAACAAGCAATTTGC 59.569 50.000 13.55 13.55 45.46 3.68
3374 6011 2.193306 GCAATTTGCGTGGTAGATGG 57.807 50.000 5.49 0.00 31.71 3.51
3375 6012 1.742831 GCAATTTGCGTGGTAGATGGA 59.257 47.619 5.49 0.00 31.71 3.41
3376 6013 2.223340 GCAATTTGCGTGGTAGATGGAG 60.223 50.000 5.49 0.00 31.71 3.86
3377 6014 1.668419 ATTTGCGTGGTAGATGGAGC 58.332 50.000 0.00 0.00 0.00 4.70
3378 6015 0.613260 TTTGCGTGGTAGATGGAGCT 59.387 50.000 0.00 0.00 0.00 4.09
3379 6016 0.613260 TTGCGTGGTAGATGGAGCTT 59.387 50.000 0.00 0.00 0.00 3.74
3380 6017 0.175760 TGCGTGGTAGATGGAGCTTC 59.824 55.000 0.00 0.00 0.00 3.86
3381 6018 0.461961 GCGTGGTAGATGGAGCTTCT 59.538 55.000 0.00 0.00 0.00 2.85
3382 6019 1.804372 GCGTGGTAGATGGAGCTTCTG 60.804 57.143 0.00 0.00 0.00 3.02
3383 6020 1.478510 CGTGGTAGATGGAGCTTCTGT 59.521 52.381 0.00 0.00 0.00 3.41
3384 6021 2.093973 CGTGGTAGATGGAGCTTCTGTT 60.094 50.000 0.00 0.00 0.00 3.16
3385 6022 3.265791 GTGGTAGATGGAGCTTCTGTTG 58.734 50.000 0.00 0.00 0.00 3.33
3386 6023 2.237143 TGGTAGATGGAGCTTCTGTTGG 59.763 50.000 0.00 0.00 0.00 3.77
3387 6024 2.501723 GGTAGATGGAGCTTCTGTTGGA 59.498 50.000 0.00 0.00 0.00 3.53
3388 6025 3.431486 GGTAGATGGAGCTTCTGTTGGAG 60.431 52.174 0.00 0.00 0.00 3.86
3389 6026 2.264455 AGATGGAGCTTCTGTTGGAGT 58.736 47.619 0.00 0.00 0.00 3.85
3390 6027 2.027377 AGATGGAGCTTCTGTTGGAGTG 60.027 50.000 0.00 0.00 0.00 3.51
3391 6028 0.397941 TGGAGCTTCTGTTGGAGTGG 59.602 55.000 0.00 0.00 0.00 4.00
3392 6029 0.398318 GGAGCTTCTGTTGGAGTGGT 59.602 55.000 0.00 0.00 0.00 4.16
3393 6030 1.609320 GGAGCTTCTGTTGGAGTGGTC 60.609 57.143 0.00 0.00 0.00 4.02
3394 6031 1.070758 GAGCTTCTGTTGGAGTGGTCA 59.929 52.381 0.00 0.00 31.85 4.02
3395 6032 1.202698 AGCTTCTGTTGGAGTGGTCAC 60.203 52.381 0.00 0.00 0.00 3.67
3396 6033 1.502231 CTTCTGTTGGAGTGGTCACG 58.498 55.000 0.00 0.00 36.20 4.35
3397 6034 0.531974 TTCTGTTGGAGTGGTCACGC 60.532 55.000 0.00 0.00 36.20 5.34
3398 6035 1.069765 CTGTTGGAGTGGTCACGCT 59.930 57.895 4.97 0.00 40.91 5.07
3399 6036 0.317160 CTGTTGGAGTGGTCACGCTA 59.683 55.000 4.97 0.00 37.63 4.26
3400 6037 0.032952 TGTTGGAGTGGTCACGCTAC 59.967 55.000 4.97 4.82 37.63 3.58
3401 6038 0.032952 GTTGGAGTGGTCACGCTACA 59.967 55.000 4.97 0.00 46.06 2.74
3402 6039 2.432119 TGGAGTGGTCACGCTACAA 58.568 52.632 4.97 0.00 44.81 2.41
3403 6040 0.032952 TGGAGTGGTCACGCTACAAC 59.967 55.000 4.97 0.00 44.81 3.32
3404 6041 0.669625 GGAGTGGTCACGCTACAACC 60.670 60.000 4.97 0.00 37.99 3.77
3405 6042 1.006571 AGTGGTCACGCTACAACCG 60.007 57.895 0.00 0.00 35.22 4.44
3406 6043 2.356553 TGGTCACGCTACAACCGC 60.357 61.111 0.00 0.00 35.76 5.68
3412 6049 4.728102 CGCTACAACCGCGGTCCA 62.728 66.667 34.29 18.38 46.32 4.02
3413 6050 2.357760 GCTACAACCGCGGTCCAA 60.358 61.111 34.29 18.33 0.00 3.53
3414 6051 2.674084 GCTACAACCGCGGTCCAAC 61.674 63.158 34.29 16.65 0.00 3.77
3415 6052 2.356075 TACAACCGCGGTCCAACG 60.356 61.111 34.29 19.43 0.00 4.10
3444 6081 4.612412 GCCGGTCCCGTGTGTGAA 62.612 66.667 1.90 0.00 37.81 3.18
3445 6082 2.109387 CCGGTCCCGTGTGTGAAA 59.891 61.111 4.84 0.00 37.81 2.69
3446 6083 1.959226 CCGGTCCCGTGTGTGAAAG 60.959 63.158 4.84 0.00 37.81 2.62
3447 6084 1.068417 CGGTCCCGTGTGTGAAAGA 59.932 57.895 0.00 0.00 34.35 2.52
3448 6085 0.531090 CGGTCCCGTGTGTGAAAGAA 60.531 55.000 0.00 0.00 34.35 2.52
3449 6086 1.226746 GGTCCCGTGTGTGAAAGAAG 58.773 55.000 0.00 0.00 0.00 2.85
3450 6087 1.202604 GGTCCCGTGTGTGAAAGAAGA 60.203 52.381 0.00 0.00 0.00 2.87
3451 6088 2.135933 GTCCCGTGTGTGAAAGAAGAG 58.864 52.381 0.00 0.00 0.00 2.85
3452 6089 0.868406 CCCGTGTGTGAAAGAAGAGC 59.132 55.000 0.00 0.00 0.00 4.09
3453 6090 0.868406 CCGTGTGTGAAAGAAGAGCC 59.132 55.000 0.00 0.00 0.00 4.70
3454 6091 1.581934 CGTGTGTGAAAGAAGAGCCA 58.418 50.000 0.00 0.00 0.00 4.75
3455 6092 1.261619 CGTGTGTGAAAGAAGAGCCAC 59.738 52.381 0.00 0.00 0.00 5.01
3456 6093 1.604278 GTGTGTGAAAGAAGAGCCACC 59.396 52.381 0.00 0.00 0.00 4.61
3457 6094 1.211703 TGTGTGAAAGAAGAGCCACCA 59.788 47.619 0.00 0.00 0.00 4.17
3458 6095 2.158623 TGTGTGAAAGAAGAGCCACCAT 60.159 45.455 0.00 0.00 0.00 3.55
3459 6096 2.485814 GTGTGAAAGAAGAGCCACCATC 59.514 50.000 0.00 0.00 0.00 3.51
3460 6097 2.087646 GTGAAAGAAGAGCCACCATCC 58.912 52.381 0.00 0.00 0.00 3.51
3461 6098 1.004745 TGAAAGAAGAGCCACCATCCC 59.995 52.381 0.00 0.00 0.00 3.85
3462 6099 0.332972 AAAGAAGAGCCACCATCCCC 59.667 55.000 0.00 0.00 0.00 4.81
3463 6100 1.915078 AAGAAGAGCCACCATCCCCG 61.915 60.000 0.00 0.00 0.00 5.73
3464 6101 4.115199 AAGAGCCACCATCCCCGC 62.115 66.667 0.00 0.00 0.00 6.13
3470 6107 4.175337 CACCATCCCCGCCACGAT 62.175 66.667 0.00 0.00 0.00 3.73
3471 6108 4.175337 ACCATCCCCGCCACGATG 62.175 66.667 0.00 0.00 36.45 3.84
3472 6109 4.175337 CCATCCCCGCCACGATGT 62.175 66.667 0.00 0.00 35.17 3.06
3473 6110 2.588877 CATCCCCGCCACGATGTC 60.589 66.667 0.00 0.00 32.82 3.06
3474 6111 4.221422 ATCCCCGCCACGATGTCG 62.221 66.667 0.11 0.11 46.33 4.35
3486 6123 2.913777 CGATGTCGTCTCTACCACAA 57.086 50.000 0.00 0.00 30.21 3.33
3487 6124 2.516923 CGATGTCGTCTCTACCACAAC 58.483 52.381 0.00 0.00 30.21 3.32
3488 6125 2.095415 CGATGTCGTCTCTACCACAACA 60.095 50.000 0.00 0.00 30.21 3.33
3489 6126 3.610821 CGATGTCGTCTCTACCACAACAA 60.611 47.826 0.00 0.00 30.21 2.83
3490 6127 3.364889 TGTCGTCTCTACCACAACAAG 57.635 47.619 0.00 0.00 0.00 3.16
3491 6128 2.035449 TGTCGTCTCTACCACAACAAGG 59.965 50.000 0.00 0.00 0.00 3.61
3492 6129 2.295349 GTCGTCTCTACCACAACAAGGA 59.705 50.000 0.00 0.00 0.00 3.36
3493 6130 2.557056 TCGTCTCTACCACAACAAGGAG 59.443 50.000 0.00 0.00 0.00 3.69
3494 6131 2.352814 CGTCTCTACCACAACAAGGAGG 60.353 54.545 0.00 0.00 0.00 4.30
3495 6132 2.633481 GTCTCTACCACAACAAGGAGGT 59.367 50.000 0.00 0.00 38.14 3.85
3496 6133 2.632996 TCTCTACCACAACAAGGAGGTG 59.367 50.000 0.00 0.00 42.09 4.00
3498 6135 3.763671 CCACAACAAGGAGGTGGC 58.236 61.111 0.00 0.00 44.84 5.01
3499 6136 2.260869 CCACAACAAGGAGGTGGCG 61.261 63.158 0.00 0.00 44.84 5.69
3500 6137 2.594592 ACAACAAGGAGGTGGCGC 60.595 61.111 0.00 0.00 40.07 6.53
3501 6138 2.281761 CAACAAGGAGGTGGCGCT 60.282 61.111 7.64 0.00 0.00 5.92
3502 6139 1.003839 CAACAAGGAGGTGGCGCTA 60.004 57.895 7.64 0.00 0.00 4.26
3503 6140 0.392998 CAACAAGGAGGTGGCGCTAT 60.393 55.000 7.64 0.00 0.00 2.97
3504 6141 0.328258 AACAAGGAGGTGGCGCTATT 59.672 50.000 7.64 0.00 0.00 1.73
3505 6142 0.392998 ACAAGGAGGTGGCGCTATTG 60.393 55.000 7.64 4.78 0.00 1.90
3506 6143 0.392998 CAAGGAGGTGGCGCTATTGT 60.393 55.000 7.64 0.00 0.00 2.71
3507 6144 0.328258 AAGGAGGTGGCGCTATTGTT 59.672 50.000 7.64 0.00 0.00 2.83
3508 6145 0.107654 AGGAGGTGGCGCTATTGTTC 60.108 55.000 7.64 0.00 0.00 3.18
3509 6146 0.107654 GGAGGTGGCGCTATTGTTCT 60.108 55.000 7.64 0.00 0.00 3.01
3510 6147 1.291132 GAGGTGGCGCTATTGTTCTC 58.709 55.000 7.64 1.50 0.00 2.87
3511 6148 0.613260 AGGTGGCGCTATTGTTCTCA 59.387 50.000 7.64 0.00 0.00 3.27
3512 6149 0.727398 GGTGGCGCTATTGTTCTCAC 59.273 55.000 7.64 2.93 0.00 3.51
3513 6150 0.727398 GTGGCGCTATTGTTCTCACC 59.273 55.000 7.64 0.00 0.00 4.02
3514 6151 0.392461 TGGCGCTATTGTTCTCACCC 60.392 55.000 7.64 0.00 0.00 4.61
3515 6152 1.095807 GGCGCTATTGTTCTCACCCC 61.096 60.000 7.64 0.00 0.00 4.95
3516 6153 0.107654 GCGCTATTGTTCTCACCCCT 60.108 55.000 0.00 0.00 0.00 4.79
3517 6154 1.679032 GCGCTATTGTTCTCACCCCTT 60.679 52.381 0.00 0.00 0.00 3.95
3518 6155 2.280628 CGCTATTGTTCTCACCCCTTC 58.719 52.381 0.00 0.00 0.00 3.46
3519 6156 2.280628 GCTATTGTTCTCACCCCTTCG 58.719 52.381 0.00 0.00 0.00 3.79
3520 6157 2.906354 CTATTGTTCTCACCCCTTCGG 58.094 52.381 0.00 0.00 37.81 4.30
3521 6158 0.322546 ATTGTTCTCACCCCTTCGGC 60.323 55.000 0.00 0.00 33.26 5.54
3522 6159 1.701031 TTGTTCTCACCCCTTCGGCA 61.701 55.000 0.00 0.00 33.26 5.69
3523 6160 1.072505 GTTCTCACCCCTTCGGCAA 59.927 57.895 0.00 0.00 33.26 4.52
3524 6161 0.322546 GTTCTCACCCCTTCGGCAAT 60.323 55.000 0.00 0.00 33.26 3.56
3525 6162 0.035439 TTCTCACCCCTTCGGCAATC 60.035 55.000 0.00 0.00 33.26 2.67
3526 6163 1.452108 CTCACCCCTTCGGCAATCC 60.452 63.158 0.00 0.00 33.26 3.01
3537 6174 3.122850 GCAATCCGGGAGCCAATG 58.877 61.111 0.00 0.00 0.00 2.82
3538 6175 2.492773 GCAATCCGGGAGCCAATGG 61.493 63.158 0.00 0.00 0.00 3.16
3548 6185 2.105528 GCCAATGGCGCCTGATTG 59.894 61.111 29.70 27.07 39.62 2.67
3549 6186 2.105528 CCAATGGCGCCTGATTGC 59.894 61.111 29.70 0.00 0.00 3.56
3555 6192 3.277133 GCGCCTGATTGCCTTCAA 58.723 55.556 0.00 0.00 36.51 2.69
3556 6193 1.138247 GCGCCTGATTGCCTTCAAG 59.862 57.895 0.00 0.00 35.37 3.02
3557 6194 1.308069 GCGCCTGATTGCCTTCAAGA 61.308 55.000 0.00 0.00 35.37 3.02
3558 6195 1.167851 CGCCTGATTGCCTTCAAGAA 58.832 50.000 0.00 0.00 35.37 2.52
3559 6196 1.131883 CGCCTGATTGCCTTCAAGAAG 59.868 52.381 2.83 2.83 35.37 2.85
3570 6207 2.984562 CTTCAAGAAGGAGGAGCTTCC 58.015 52.381 1.86 0.00 37.52 3.46
3571 6208 1.280457 TCAAGAAGGAGGAGCTTCCC 58.720 55.000 0.53 0.00 37.19 3.97
3572 6209 1.203364 TCAAGAAGGAGGAGCTTCCCT 60.203 52.381 0.53 0.00 37.19 4.20
3580 6217 3.803162 GAGCTTCCCTCCCTGCCC 61.803 72.222 0.00 0.00 34.35 5.36
3583 6220 3.787001 CTTCCCTCCCTGCCCGTC 61.787 72.222 0.00 0.00 0.00 4.79
3588 6225 3.528370 CTCCCTGCCCGTCCGTAG 61.528 72.222 0.00 0.00 0.00 3.51
3589 6226 4.371417 TCCCTGCCCGTCCGTAGT 62.371 66.667 0.00 0.00 0.00 2.73
3590 6227 3.834799 CCCTGCCCGTCCGTAGTC 61.835 72.222 0.00 0.00 0.00 2.59
3591 6228 3.834799 CCTGCCCGTCCGTAGTCC 61.835 72.222 0.00 0.00 0.00 3.85
3592 6229 4.189188 CTGCCCGTCCGTAGTCCG 62.189 72.222 0.00 0.00 0.00 4.79
3601 6238 3.915575 CGTAGTCCGGTAGCCAGT 58.084 61.111 0.00 0.00 0.00 4.00
3602 6239 1.726265 CGTAGTCCGGTAGCCAGTC 59.274 63.158 0.00 0.00 0.00 3.51
3603 6240 0.747283 CGTAGTCCGGTAGCCAGTCT 60.747 60.000 0.00 0.00 0.00 3.24
3604 6241 1.023502 GTAGTCCGGTAGCCAGTCTC 58.976 60.000 0.00 0.00 0.00 3.36
3605 6242 0.463295 TAGTCCGGTAGCCAGTCTCG 60.463 60.000 0.00 0.00 0.00 4.04
3606 6243 3.138798 TCCGGTAGCCAGTCTCGC 61.139 66.667 0.00 0.00 0.00 5.03
3607 6244 4.208686 CCGGTAGCCAGTCTCGCC 62.209 72.222 0.00 0.00 0.00 5.54
3608 6245 4.208686 CGGTAGCCAGTCTCGCCC 62.209 72.222 0.00 0.00 0.00 6.13
3609 6246 3.851128 GGTAGCCAGTCTCGCCCC 61.851 72.222 0.00 0.00 0.00 5.80
3610 6247 3.075005 GTAGCCAGTCTCGCCCCA 61.075 66.667 0.00 0.00 0.00 4.96
3611 6248 2.041922 TAGCCAGTCTCGCCCCAT 60.042 61.111 0.00 0.00 0.00 4.00
3612 6249 2.134287 TAGCCAGTCTCGCCCCATC 61.134 63.158 0.00 0.00 0.00 3.51
3613 6250 4.899239 GCCAGTCTCGCCCCATCG 62.899 72.222 0.00 0.00 0.00 3.84
3614 6251 4.899239 CCAGTCTCGCCCCATCGC 62.899 72.222 0.00 0.00 0.00 4.58
3615 6252 4.899239 CAGTCTCGCCCCATCGCC 62.899 72.222 0.00 0.00 0.00 5.54
3622 6259 4.467084 GCCCCATCGCCGTCAAGA 62.467 66.667 0.00 0.00 0.00 3.02
3623 6260 2.511600 CCCCATCGCCGTCAAGAC 60.512 66.667 0.00 0.00 0.00 3.01
3634 6271 2.666989 GTCAAGACGGAGGAATCGC 58.333 57.895 0.00 0.00 0.00 4.58
3635 6272 0.806492 GTCAAGACGGAGGAATCGCC 60.806 60.000 0.00 0.00 0.00 5.54
3636 6273 1.521681 CAAGACGGAGGAATCGCCC 60.522 63.158 0.00 0.00 37.37 6.13
3637 6274 1.987855 AAGACGGAGGAATCGCCCA 60.988 57.895 0.00 0.00 37.37 5.36
3638 6275 2.202892 GACGGAGGAATCGCCCAC 60.203 66.667 0.00 0.00 37.37 4.61
3639 6276 3.735037 GACGGAGGAATCGCCCACC 62.735 68.421 0.00 0.00 37.37 4.61
3640 6277 4.547367 CGGAGGAATCGCCCACCC 62.547 72.222 0.00 0.00 37.37 4.61
3641 6278 3.090532 GGAGGAATCGCCCACCCT 61.091 66.667 0.00 0.00 37.37 4.34
3642 6279 2.190578 GAGGAATCGCCCACCCTG 59.809 66.667 0.00 0.00 37.37 4.45
3643 6280 2.610859 AGGAATCGCCCACCCTGT 60.611 61.111 0.00 0.00 37.37 4.00
3644 6281 2.198304 GAGGAATCGCCCACCCTGTT 62.198 60.000 0.00 0.00 37.37 3.16
3645 6282 2.046285 GGAATCGCCCACCCTGTTG 61.046 63.158 0.00 0.00 0.00 3.33
3646 6283 1.002624 GAATCGCCCACCCTGTTGA 60.003 57.895 0.00 0.00 0.00 3.18
3647 6284 0.394352 GAATCGCCCACCCTGTTGAT 60.394 55.000 0.00 0.00 0.00 2.57
3648 6285 0.394352 AATCGCCCACCCTGTTGATC 60.394 55.000 0.00 0.00 0.00 2.92
3649 6286 1.274703 ATCGCCCACCCTGTTGATCT 61.275 55.000 0.00 0.00 0.00 2.75
3650 6287 1.450312 CGCCCACCCTGTTGATCTC 60.450 63.158 0.00 0.00 0.00 2.75
3651 6288 1.077429 GCCCACCCTGTTGATCTCC 60.077 63.158 0.00 0.00 0.00 3.71
3652 6289 1.852157 GCCCACCCTGTTGATCTCCA 61.852 60.000 0.00 0.00 0.00 3.86
3653 6290 0.698238 CCCACCCTGTTGATCTCCAA 59.302 55.000 0.00 0.00 0.00 3.53
3654 6291 1.340405 CCCACCCTGTTGATCTCCAAG 60.340 57.143 0.00 0.00 35.03 3.61
3655 6292 1.340405 CCACCCTGTTGATCTCCAAGG 60.340 57.143 0.00 0.00 35.03 3.61
3656 6293 0.329596 ACCCTGTTGATCTCCAAGGC 59.670 55.000 0.00 0.00 35.03 4.35
3657 6294 0.745845 CCCTGTTGATCTCCAAGGCG 60.746 60.000 0.00 0.00 35.03 5.52
3658 6295 1.372087 CCTGTTGATCTCCAAGGCGC 61.372 60.000 0.00 0.00 35.03 6.53
3659 6296 1.699656 CTGTTGATCTCCAAGGCGCG 61.700 60.000 0.00 0.00 35.03 6.86
3660 6297 2.819595 TTGATCTCCAAGGCGCGC 60.820 61.111 25.94 25.94 0.00 6.86
3661 6298 3.604129 TTGATCTCCAAGGCGCGCA 62.604 57.895 34.42 11.01 0.00 6.09
3662 6299 3.267860 GATCTCCAAGGCGCGCAG 61.268 66.667 34.42 21.16 0.00 5.18
3663 6300 4.087892 ATCTCCAAGGCGCGCAGT 62.088 61.111 34.42 17.26 0.00 4.40
3664 6301 4.742201 TCTCCAAGGCGCGCAGTC 62.742 66.667 34.42 16.19 0.00 3.51
3675 6312 2.026301 CGCAGTCGCCTAGCCTAC 59.974 66.667 0.00 0.00 33.11 3.18
3676 6313 2.482333 CGCAGTCGCCTAGCCTACT 61.482 63.158 0.00 0.00 33.11 2.57
3677 6314 1.164662 CGCAGTCGCCTAGCCTACTA 61.165 60.000 0.00 0.00 33.11 1.82
3678 6315 0.311477 GCAGTCGCCTAGCCTACTAC 59.689 60.000 0.00 0.00 0.00 2.73
3679 6316 0.953003 CAGTCGCCTAGCCTACTACC 59.047 60.000 0.00 0.00 0.00 3.18
3680 6317 0.845337 AGTCGCCTAGCCTACTACCT 59.155 55.000 0.00 0.00 0.00 3.08
3681 6318 1.214923 AGTCGCCTAGCCTACTACCTT 59.785 52.381 0.00 0.00 0.00 3.50
3682 6319 1.337387 GTCGCCTAGCCTACTACCTTG 59.663 57.143 0.00 0.00 0.00 3.61
3683 6320 1.213678 TCGCCTAGCCTACTACCTTGA 59.786 52.381 0.00 0.00 0.00 3.02
3684 6321 2.158505 TCGCCTAGCCTACTACCTTGAT 60.159 50.000 0.00 0.00 0.00 2.57
3685 6322 2.029828 CGCCTAGCCTACTACCTTGATG 60.030 54.545 0.00 0.00 0.00 3.07
3686 6323 2.966516 GCCTAGCCTACTACCTTGATGT 59.033 50.000 0.00 0.00 0.00 3.06
3687 6324 3.243907 GCCTAGCCTACTACCTTGATGTG 60.244 52.174 0.00 0.00 0.00 3.21
3688 6325 3.322254 CCTAGCCTACTACCTTGATGTGG 59.678 52.174 0.00 0.00 0.00 4.17
3689 6326 1.486726 AGCCTACTACCTTGATGTGGC 59.513 52.381 0.00 0.00 39.40 5.01
3690 6327 1.209504 GCCTACTACCTTGATGTGGCA 59.790 52.381 0.00 0.00 38.99 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.804139 GTCACACATAGGATTACCTTGACG 59.196 45.833 0.00 0.00 45.36 4.35
1 2 5.730550 TGTCACACATAGGATTACCTTGAC 58.269 41.667 0.00 0.00 45.36 3.18
2 3 5.483937 ACTGTCACACATAGGATTACCTTGA 59.516 40.000 0.00 0.00 45.36 3.02
3 4 5.734720 ACTGTCACACATAGGATTACCTTG 58.265 41.667 0.00 0.00 45.36 3.61
4 5 6.668283 ACTACTGTCACACATAGGATTACCTT 59.332 38.462 0.00 0.00 45.36 3.50
5 6 6.321690 GACTACTGTCACACATAGGATTACCT 59.678 42.308 0.00 0.00 44.56 3.08
6 7 6.321690 AGACTACTGTCACACATAGGATTACC 59.678 42.308 0.00 0.00 45.20 2.85
7 8 7.197017 CAGACTACTGTCACACATAGGATTAC 58.803 42.308 0.00 0.00 45.20 1.89
8 9 7.334844 CAGACTACTGTCACACATAGGATTA 57.665 40.000 0.00 0.00 45.20 1.75
71 72 1.817099 CCCGAGCAGCCTTCATCAC 60.817 63.158 0.00 0.00 0.00 3.06
89 92 1.522580 GATCAAGCCCGAGCAGACC 60.523 63.158 0.00 0.00 43.56 3.85
92 95 2.208431 CTAAAGATCAAGCCCGAGCAG 58.792 52.381 0.00 0.00 43.56 4.24
139 142 1.871080 CCATCGCTGGATCCAACTAC 58.129 55.000 17.00 4.83 46.37 2.73
171 174 1.216427 GGCCTCCAAGAAGGGAATGAT 59.784 52.381 0.00 0.00 36.27 2.45
177 180 1.260544 CAAAAGGCCTCCAAGAAGGG 58.739 55.000 5.23 0.00 36.88 3.95
182 185 1.889170 GTTCTCCAAAAGGCCTCCAAG 59.111 52.381 5.23 0.00 0.00 3.61
263 270 5.011090 TCCTCCTGAAGTGATGAAATACG 57.989 43.478 0.00 0.00 0.00 3.06
361 368 1.275657 GCACACAACGAACCGACAG 59.724 57.895 0.00 0.00 0.00 3.51
365 372 0.385473 GGAATGCACACAACGAACCG 60.385 55.000 0.00 0.00 0.00 4.44
384 391 4.880120 ACACATCTGACCTCTGCATAATTG 59.120 41.667 0.00 0.00 0.00 2.32
400 407 9.547753 GGACACAATTATAATGAGTACACATCT 57.452 33.333 6.24 0.67 0.00 2.90
417 424 7.414098 GCATAACGTAGAATCAAGGACACAATT 60.414 37.037 0.00 0.00 0.00 2.32
423 430 6.663944 AAAGCATAACGTAGAATCAAGGAC 57.336 37.500 0.00 0.00 0.00 3.85
555 580 1.262640 ACGAAAGCTACCGGGTCCAT 61.263 55.000 6.32 0.00 0.00 3.41
556 581 1.909781 ACGAAAGCTACCGGGTCCA 60.910 57.895 6.32 0.00 0.00 4.02
613 638 1.003812 TGTTACACATTTCCGAGGGGG 59.996 52.381 0.00 0.00 37.02 5.40
673 698 1.216977 CCAAGTACGTCCATCGGCA 59.783 57.895 0.00 0.00 44.69 5.69
686 711 6.901300 TCATATACTCCCTAACAACTCCAAGT 59.099 38.462 0.00 0.00 0.00 3.16
687 712 7.361457 TCATATACTCCCTAACAACTCCAAG 57.639 40.000 0.00 0.00 0.00 3.61
688 713 7.016268 GGATCATATACTCCCTAACAACTCCAA 59.984 40.741 0.00 0.00 0.00 3.53
689 714 6.497259 GGATCATATACTCCCTAACAACTCCA 59.503 42.308 0.00 0.00 0.00 3.86
690 715 6.070710 GGGATCATATACTCCCTAACAACTCC 60.071 46.154 12.58 0.00 46.55 3.85
691 716 6.937392 GGGATCATATACTCCCTAACAACTC 58.063 44.000 12.58 0.00 46.55 3.01
692 717 6.936968 GGGATCATATACTCCCTAACAACT 57.063 41.667 12.58 0.00 46.55 3.16
701 726 7.684529 AGACATTTGAAGGGATCATATACTCC 58.315 38.462 0.00 0.00 38.03 3.85
702 727 8.592809 AGAGACATTTGAAGGGATCATATACTC 58.407 37.037 0.00 0.00 38.03 2.59
703 728 8.503428 AGAGACATTTGAAGGGATCATATACT 57.497 34.615 0.00 0.00 38.03 2.12
704 729 7.821846 GGAGAGACATTTGAAGGGATCATATAC 59.178 40.741 0.00 0.00 38.03 1.47
705 730 7.038017 GGGAGAGACATTTGAAGGGATCATATA 60.038 40.741 0.00 0.00 38.03 0.86
844 881 1.533033 GGGGTCAAAAGGTGGTGGG 60.533 63.158 0.00 0.00 0.00 4.61
991 1046 5.390145 CGCGTGGTATTTATAGGGTTTATGC 60.390 44.000 0.00 0.00 0.00 3.14
993 1048 4.692155 GCGCGTGGTATTTATAGGGTTTAT 59.308 41.667 8.43 0.00 0.00 1.40
994 1049 4.057432 GCGCGTGGTATTTATAGGGTTTA 58.943 43.478 8.43 0.00 0.00 2.01
995 1050 2.874086 GCGCGTGGTATTTATAGGGTTT 59.126 45.455 8.43 0.00 0.00 3.27
996 1051 2.486918 GCGCGTGGTATTTATAGGGTT 58.513 47.619 8.43 0.00 0.00 4.11
997 1052 1.603678 CGCGCGTGGTATTTATAGGGT 60.604 52.381 24.19 0.00 0.00 4.34
1017 1072 3.140814 GCATTGAAGGGGGCGGAC 61.141 66.667 0.00 0.00 0.00 4.79
1022 1077 0.251742 TGACTTGGCATTGAAGGGGG 60.252 55.000 0.00 0.00 0.00 5.40
1077 1134 3.126000 GTCTTAGTAAGCTTGCTTGGCAG 59.874 47.826 22.51 12.93 40.61 4.85
1078 1135 3.074412 GTCTTAGTAAGCTTGCTTGGCA 58.926 45.455 22.51 1.18 36.47 4.92
1079 1136 3.126000 CAGTCTTAGTAAGCTTGCTTGGC 59.874 47.826 22.51 16.20 0.00 4.52
1080 1137 4.319177 ACAGTCTTAGTAAGCTTGCTTGG 58.681 43.478 22.51 14.67 0.00 3.61
1081 1138 5.233988 AGACAGTCTTAGTAAGCTTGCTTG 58.766 41.667 22.51 15.72 0.00 4.01
1082 1139 5.476091 AGACAGTCTTAGTAAGCTTGCTT 57.524 39.130 22.51 12.65 0.00 3.91
1101 1158 4.716997 GCTGGATGCAGACGGAGTAGAC 62.717 59.091 19.59 0.00 41.57 2.59
1121 1178 0.521735 GAAAAGTGACCGGTGGATGC 59.478 55.000 14.63 0.00 0.00 3.91
1122 1179 2.076863 GAGAAAAGTGACCGGTGGATG 58.923 52.381 14.63 0.00 0.00 3.51
1123 1180 1.978580 AGAGAAAAGTGACCGGTGGAT 59.021 47.619 14.63 0.00 0.00 3.41
1124 1181 1.343465 GAGAGAAAAGTGACCGGTGGA 59.657 52.381 14.63 0.00 0.00 4.02
1131 1188 4.453819 CCATTGGTGAGAGAGAAAAGTGAC 59.546 45.833 0.00 0.00 0.00 3.67
1138 1195 0.250234 CCGCCATTGGTGAGAGAGAA 59.750 55.000 17.90 0.00 34.74 2.87
1537 1629 3.308014 GAGCAGCTCGTCCTTGGCT 62.308 63.158 6.67 0.00 36.70 4.75
1918 2116 2.110213 AGCACCTCAAACGCCGAA 59.890 55.556 0.00 0.00 0.00 4.30
1927 2125 2.981914 CTTTGGCCACCAGCACCTCA 62.982 60.000 3.88 0.00 46.50 3.86
2058 2256 0.108329 GCAGTTGCCGTAGAAGCCTA 60.108 55.000 0.00 0.00 34.31 3.93
2059 2257 1.376037 GCAGTTGCCGTAGAAGCCT 60.376 57.895 0.00 0.00 34.31 4.58
2152 2350 2.663196 CGCCTCTTCCCGTCCTTT 59.337 61.111 0.00 0.00 0.00 3.11
2578 2838 3.106054 CCATCCCATCAACCAATCCAAA 58.894 45.455 0.00 0.00 0.00 3.28
2756 3026 9.783256 ACCGATGCTTATTTGTAAAGAATAAAC 57.217 29.630 0.00 0.00 30.87 2.01
2816 3088 2.684001 TGGTGAACCGCCTTATACTG 57.316 50.000 0.00 0.00 39.43 2.74
2845 3117 1.134877 ACTGTGCGATCCAGACATCTG 60.135 52.381 1.63 1.63 43.40 2.90
2882 3226 1.906994 TTGATGCCTGCGCGTTGTAC 61.907 55.000 8.43 0.00 38.08 2.90
2891 3235 1.994779 CCGAACAAAATTGATGCCTGC 59.005 47.619 0.00 0.00 0.00 4.85
2893 3237 3.826157 TCTTCCGAACAAAATTGATGCCT 59.174 39.130 0.00 0.00 0.00 4.75
2908 3255 3.780804 TTGTGGATTTCCTTCTTCCGA 57.219 42.857 0.00 0.00 36.82 4.55
2913 3260 2.107552 TCCGGTTTGTGGATTTCCTTCT 59.892 45.455 0.00 0.00 36.82 2.85
2917 3264 1.271379 GGTTCCGGTTTGTGGATTTCC 59.729 52.381 0.00 0.00 34.91 3.13
3002 3349 3.523564 ACTGGAGCAAGGGTATTGTATGT 59.476 43.478 0.00 0.00 0.00 2.29
3010 5644 0.970937 CGGAGACTGGAGCAAGGGTA 60.971 60.000 0.00 0.00 0.00 3.69
3012 5646 2.286523 ACGGAGACTGGAGCAAGGG 61.287 63.158 0.00 0.00 0.00 3.95
3081 5715 4.989279 ATGCATGTAGGGAAAACATCAC 57.011 40.909 0.00 0.00 35.39 3.06
3090 5724 4.503817 GCTCTGTATCAATGCATGTAGGGA 60.504 45.833 0.00 0.00 0.00 4.20
3098 5732 1.473257 GGTCGGCTCTGTATCAATGCA 60.473 52.381 0.00 0.00 0.00 3.96
3167 5804 0.755698 GAGAGGCGATGGTGTAGGGA 60.756 60.000 0.00 0.00 0.00 4.20
3184 5821 4.357918 TTGGGAGTGGAGAAAAGAAGAG 57.642 45.455 0.00 0.00 0.00 2.85
3191 5828 3.157087 GCAGATTTTGGGAGTGGAGAAA 58.843 45.455 0.00 0.00 0.00 2.52
3198 5835 2.978156 TTGGAGCAGATTTTGGGAGT 57.022 45.000 0.00 0.00 0.00 3.85
3210 5847 2.681064 GCCTTGCCCATTGGAGCA 60.681 61.111 12.98 12.98 37.18 4.26
3216 5853 3.064324 GACGCTGCCTTGCCCATT 61.064 61.111 0.00 0.00 0.00 3.16
3238 5875 2.304761 GTGGAGGTTGTGGAGAACCATA 59.695 50.000 8.31 0.00 46.94 2.74
3239 5876 1.073923 GTGGAGGTTGTGGAGAACCAT 59.926 52.381 8.31 0.00 46.94 3.55
3263 5900 4.821589 CTTCACCGGCGAGGGAGC 62.822 72.222 9.30 0.00 46.96 4.70
3264 5901 4.821589 GCTTCACCGGCGAGGGAG 62.822 72.222 9.30 4.92 46.96 4.30
3274 5911 0.395724 ATTTGGGATCCGGCTTCACC 60.396 55.000 5.45 0.95 0.00 4.02
3275 5912 1.025041 GATTTGGGATCCGGCTTCAC 58.975 55.000 5.45 0.00 0.00 3.18
3276 5913 0.106719 GGATTTGGGATCCGGCTTCA 60.107 55.000 5.45 0.00 0.00 3.02
3277 5914 0.183731 AGGATTTGGGATCCGGCTTC 59.816 55.000 5.45 0.00 42.87 3.86
3278 5915 0.183731 GAGGATTTGGGATCCGGCTT 59.816 55.000 5.45 0.00 42.87 4.35
3279 5916 1.839894 GAGGATTTGGGATCCGGCT 59.160 57.895 5.45 0.00 42.87 5.52
3280 5917 1.598130 CGAGGATTTGGGATCCGGC 60.598 63.158 5.45 0.00 42.87 6.13
3281 5918 1.071471 CCGAGGATTTGGGATCCGG 59.929 63.158 5.45 0.00 42.87 5.14
3282 5919 0.249911 GTCCGAGGATTTGGGATCCG 60.250 60.000 5.45 0.00 42.87 4.18
3283 5920 1.132500 AGTCCGAGGATTTGGGATCC 58.868 55.000 1.92 1.92 38.47 3.36
3284 5921 2.966516 AGTAGTCCGAGGATTTGGGATC 59.033 50.000 0.00 0.00 31.43 3.36
3285 5922 3.047695 AGTAGTCCGAGGATTTGGGAT 57.952 47.619 0.00 0.00 31.43 3.85
3286 5923 2.544844 AGTAGTCCGAGGATTTGGGA 57.455 50.000 0.00 0.00 0.00 4.37
3287 5924 2.628657 CCTAGTAGTCCGAGGATTTGGG 59.371 54.545 0.00 0.00 31.45 4.12
3288 5925 3.563223 TCCTAGTAGTCCGAGGATTTGG 58.437 50.000 0.00 0.00 34.36 3.28
3289 5926 3.004944 GCTCCTAGTAGTCCGAGGATTTG 59.995 52.174 0.00 0.00 38.69 2.32
3290 5927 3.224269 GCTCCTAGTAGTCCGAGGATTT 58.776 50.000 0.00 0.00 38.69 2.17
3291 5928 2.175069 TGCTCCTAGTAGTCCGAGGATT 59.825 50.000 0.00 0.00 38.69 3.01
3292 5929 1.775459 TGCTCCTAGTAGTCCGAGGAT 59.225 52.381 0.00 0.00 38.69 3.24
3293 5930 1.141254 CTGCTCCTAGTAGTCCGAGGA 59.859 57.143 0.00 0.00 37.02 3.71
3294 5931 1.600023 CTGCTCCTAGTAGTCCGAGG 58.400 60.000 0.00 0.00 0.00 4.63
3295 5932 1.141254 TCCTGCTCCTAGTAGTCCGAG 59.859 57.143 0.00 0.00 0.00 4.63
3296 5933 1.141254 CTCCTGCTCCTAGTAGTCCGA 59.859 57.143 0.00 0.00 0.00 4.55
3297 5934 1.600023 CTCCTGCTCCTAGTAGTCCG 58.400 60.000 0.00 0.00 0.00 4.79
3298 5935 1.324383 GCTCCTGCTCCTAGTAGTCC 58.676 60.000 0.00 0.00 36.03 3.85
3299 5936 1.953686 CTGCTCCTGCTCCTAGTAGTC 59.046 57.143 0.00 0.00 40.48 2.59
3300 5937 2.026905 GCTGCTCCTGCTCCTAGTAGT 61.027 57.143 0.00 0.00 40.48 2.73
3301 5938 0.673437 GCTGCTCCTGCTCCTAGTAG 59.327 60.000 0.00 0.00 40.48 2.57
3302 5939 0.757188 GGCTGCTCCTGCTCCTAGTA 60.757 60.000 0.00 0.00 40.48 1.82
3303 5940 2.063378 GGCTGCTCCTGCTCCTAGT 61.063 63.158 0.00 0.00 40.48 2.57
3304 5941 2.820973 GGCTGCTCCTGCTCCTAG 59.179 66.667 0.00 0.00 40.48 3.02
3305 5942 3.150335 CGGCTGCTCCTGCTCCTA 61.150 66.667 0.00 0.00 40.48 2.94
3314 5951 4.925861 GAGGATGGGCGGCTGCTC 62.926 72.222 18.85 15.47 44.05 4.26
3319 5956 4.467084 TTCGTGAGGATGGGCGGC 62.467 66.667 0.00 0.00 0.00 6.53
3320 5957 2.202932 CTTCGTGAGGATGGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
3341 5978 0.110823 AATTGCTTGTTCGTCGCGAC 60.111 50.000 28.96 28.96 34.89 5.19
3342 5979 0.584396 AAATTGCTTGTTCGTCGCGA 59.416 45.000 3.71 3.71 0.00 5.87
3343 5980 0.697010 CAAATTGCTTGTTCGTCGCG 59.303 50.000 0.00 0.00 0.00 5.87
3344 5981 0.430858 GCAAATTGCTTGTTCGTCGC 59.569 50.000 11.19 0.00 40.96 5.19
3345 5982 0.697010 CGCAAATTGCTTGTTCGTCG 59.303 50.000 16.42 0.00 42.25 5.12
3346 5983 1.447938 CACGCAAATTGCTTGTTCGTC 59.552 47.619 16.42 0.00 42.25 4.20
3347 5984 1.476074 CACGCAAATTGCTTGTTCGT 58.524 45.000 16.42 2.27 42.25 3.85
3348 5985 0.777631 CCACGCAAATTGCTTGTTCG 59.222 50.000 20.38 5.38 40.51 3.95
3349 5986 1.851658 ACCACGCAAATTGCTTGTTC 58.148 45.000 20.38 0.00 40.51 3.18
3350 5987 2.621055 TCTACCACGCAAATTGCTTGTT 59.379 40.909 20.38 11.12 40.51 2.83
3351 5988 2.226330 TCTACCACGCAAATTGCTTGT 58.774 42.857 20.38 14.16 40.51 3.16
3352 5989 2.987413 TCTACCACGCAAATTGCTTG 57.013 45.000 16.22 16.22 42.25 4.01
3353 5990 2.164219 CCATCTACCACGCAAATTGCTT 59.836 45.455 16.42 3.39 42.25 3.91
3354 5991 1.745087 CCATCTACCACGCAAATTGCT 59.255 47.619 16.42 0.00 42.25 3.91
3355 5992 1.742831 TCCATCTACCACGCAAATTGC 59.257 47.619 8.09 8.09 40.69 3.56
3356 5993 2.223340 GCTCCATCTACCACGCAAATTG 60.223 50.000 0.00 0.00 0.00 2.32
3357 5994 2.017049 GCTCCATCTACCACGCAAATT 58.983 47.619 0.00 0.00 0.00 1.82
3358 5995 1.210478 AGCTCCATCTACCACGCAAAT 59.790 47.619 0.00 0.00 0.00 2.32
3359 5996 0.613260 AGCTCCATCTACCACGCAAA 59.387 50.000 0.00 0.00 0.00 3.68
3360 5997 0.613260 AAGCTCCATCTACCACGCAA 59.387 50.000 0.00 0.00 0.00 4.85
3361 5998 0.175760 GAAGCTCCATCTACCACGCA 59.824 55.000 0.00 0.00 0.00 5.24
3362 5999 0.461961 AGAAGCTCCATCTACCACGC 59.538 55.000 0.00 0.00 0.00 5.34
3363 6000 1.478510 ACAGAAGCTCCATCTACCACG 59.521 52.381 0.00 0.00 0.00 4.94
3364 6001 3.265791 CAACAGAAGCTCCATCTACCAC 58.734 50.000 0.00 0.00 0.00 4.16
3365 6002 2.237143 CCAACAGAAGCTCCATCTACCA 59.763 50.000 0.00 0.00 0.00 3.25
3366 6003 2.501723 TCCAACAGAAGCTCCATCTACC 59.498 50.000 0.00 0.00 0.00 3.18
3367 6004 3.196685 ACTCCAACAGAAGCTCCATCTAC 59.803 47.826 0.00 0.00 0.00 2.59
3368 6005 3.196469 CACTCCAACAGAAGCTCCATCTA 59.804 47.826 0.00 0.00 0.00 1.98
3369 6006 2.027377 CACTCCAACAGAAGCTCCATCT 60.027 50.000 0.00 0.00 0.00 2.90
3370 6007 2.354259 CACTCCAACAGAAGCTCCATC 58.646 52.381 0.00 0.00 0.00 3.51
3371 6008 1.004044 CCACTCCAACAGAAGCTCCAT 59.996 52.381 0.00 0.00 0.00 3.41
3372 6009 0.397941 CCACTCCAACAGAAGCTCCA 59.602 55.000 0.00 0.00 0.00 3.86
3373 6010 0.398318 ACCACTCCAACAGAAGCTCC 59.602 55.000 0.00 0.00 0.00 4.70
3374 6011 1.070758 TGACCACTCCAACAGAAGCTC 59.929 52.381 0.00 0.00 0.00 4.09
3375 6012 1.131638 TGACCACTCCAACAGAAGCT 58.868 50.000 0.00 0.00 0.00 3.74
3376 6013 1.230324 GTGACCACTCCAACAGAAGC 58.770 55.000 0.00 0.00 0.00 3.86
3377 6014 1.502231 CGTGACCACTCCAACAGAAG 58.498 55.000 0.00 0.00 0.00 2.85
3378 6015 0.531974 GCGTGACCACTCCAACAGAA 60.532 55.000 0.00 0.00 0.00 3.02
3379 6016 1.069090 GCGTGACCACTCCAACAGA 59.931 57.895 0.00 0.00 0.00 3.41
3380 6017 0.317160 TAGCGTGACCACTCCAACAG 59.683 55.000 0.00 0.00 0.00 3.16
3381 6018 0.032952 GTAGCGTGACCACTCCAACA 59.967 55.000 0.00 0.00 0.00 3.33
3382 6019 0.032952 TGTAGCGTGACCACTCCAAC 59.967 55.000 0.00 0.00 0.00 3.77
3383 6020 0.753867 TTGTAGCGTGACCACTCCAA 59.246 50.000 0.00 0.00 0.00 3.53
3384 6021 0.032952 GTTGTAGCGTGACCACTCCA 59.967 55.000 0.00 0.00 0.00 3.86
3385 6022 0.669625 GGTTGTAGCGTGACCACTCC 60.670 60.000 0.00 0.00 33.61 3.85
3386 6023 1.007336 CGGTTGTAGCGTGACCACTC 61.007 60.000 0.00 0.00 33.95 3.51
3387 6024 1.006571 CGGTTGTAGCGTGACCACT 60.007 57.895 0.00 0.00 33.95 4.00
3388 6025 2.664436 GCGGTTGTAGCGTGACCAC 61.664 63.158 0.15 0.00 41.74 4.16
3389 6026 2.356553 GCGGTTGTAGCGTGACCA 60.357 61.111 0.15 0.00 41.74 4.02
3396 6033 2.357760 TTGGACCGCGGTTGTAGC 60.358 61.111 34.65 19.23 0.00 3.58
3397 6034 2.377310 CGTTGGACCGCGGTTGTAG 61.377 63.158 34.65 18.78 0.00 2.74
3398 6035 2.356075 CGTTGGACCGCGGTTGTA 60.356 61.111 34.65 18.86 0.00 2.41
3427 6064 4.612412 TTCACACACGGGACCGGC 62.612 66.667 15.92 0.00 44.69 6.13
3428 6065 1.959226 CTTTCACACACGGGACCGG 60.959 63.158 15.92 0.00 44.69 5.28
3429 6066 0.531090 TTCTTTCACACACGGGACCG 60.531 55.000 9.56 9.56 46.03 4.79
3430 6067 1.202604 TCTTCTTTCACACACGGGACC 60.203 52.381 0.00 0.00 0.00 4.46
3431 6068 2.135933 CTCTTCTTTCACACACGGGAC 58.864 52.381 0.00 0.00 0.00 4.46
3432 6069 1.540363 GCTCTTCTTTCACACACGGGA 60.540 52.381 0.00 0.00 0.00 5.14
3433 6070 0.868406 GCTCTTCTTTCACACACGGG 59.132 55.000 0.00 0.00 0.00 5.28
3434 6071 0.868406 GGCTCTTCTTTCACACACGG 59.132 55.000 0.00 0.00 0.00 4.94
3435 6072 1.261619 GTGGCTCTTCTTTCACACACG 59.738 52.381 0.00 0.00 0.00 4.49
3436 6073 1.604278 GGTGGCTCTTCTTTCACACAC 59.396 52.381 0.00 0.00 32.29 3.82
3437 6074 1.211703 TGGTGGCTCTTCTTTCACACA 59.788 47.619 0.00 0.00 32.29 3.72
3438 6075 1.967319 TGGTGGCTCTTCTTTCACAC 58.033 50.000 0.00 0.00 32.29 3.82
3439 6076 2.553028 GGATGGTGGCTCTTCTTTCACA 60.553 50.000 0.00 0.00 32.29 3.58
3440 6077 2.087646 GGATGGTGGCTCTTCTTTCAC 58.912 52.381 0.00 0.00 0.00 3.18
3441 6078 1.004745 GGGATGGTGGCTCTTCTTTCA 59.995 52.381 0.00 0.00 0.00 2.69
3442 6079 1.683319 GGGGATGGTGGCTCTTCTTTC 60.683 57.143 0.00 0.00 0.00 2.62
3443 6080 0.332972 GGGGATGGTGGCTCTTCTTT 59.667 55.000 0.00 0.00 0.00 2.52
3444 6081 1.915078 CGGGGATGGTGGCTCTTCTT 61.915 60.000 0.00 0.00 0.00 2.52
3445 6082 2.370445 CGGGGATGGTGGCTCTTCT 61.370 63.158 0.00 0.00 0.00 2.85
3446 6083 2.190578 CGGGGATGGTGGCTCTTC 59.809 66.667 0.00 0.00 0.00 2.87
3447 6084 4.115199 GCGGGGATGGTGGCTCTT 62.115 66.667 0.00 0.00 0.00 2.85
3453 6090 4.175337 ATCGTGGCGGGGATGGTG 62.175 66.667 0.00 0.00 0.00 4.17
3454 6091 4.175337 CATCGTGGCGGGGATGGT 62.175 66.667 4.81 0.00 37.09 3.55
3455 6092 4.175337 ACATCGTGGCGGGGATGG 62.175 66.667 14.14 0.98 43.34 3.51
3456 6093 2.588877 GACATCGTGGCGGGGATG 60.589 66.667 9.73 9.73 44.34 3.51
3467 6104 2.095415 TGTTGTGGTAGAGACGACATCG 60.095 50.000 0.00 0.00 42.93 3.84
3468 6105 3.570926 TGTTGTGGTAGAGACGACATC 57.429 47.619 0.00 0.00 42.93 3.06
3469 6106 3.306088 CCTTGTTGTGGTAGAGACGACAT 60.306 47.826 0.00 0.00 42.93 3.06
3470 6107 2.035449 CCTTGTTGTGGTAGAGACGACA 59.965 50.000 0.00 0.00 41.91 4.35
3471 6108 2.295349 TCCTTGTTGTGGTAGAGACGAC 59.705 50.000 0.00 0.00 35.03 4.34
3472 6109 2.557056 CTCCTTGTTGTGGTAGAGACGA 59.443 50.000 0.00 0.00 0.00 4.20
3473 6110 2.352814 CCTCCTTGTTGTGGTAGAGACG 60.353 54.545 0.00 0.00 0.00 4.18
3474 6111 2.633481 ACCTCCTTGTTGTGGTAGAGAC 59.367 50.000 0.00 0.00 0.00 3.36
3475 6112 2.632996 CACCTCCTTGTTGTGGTAGAGA 59.367 50.000 0.00 0.00 0.00 3.10
3476 6113 2.289694 CCACCTCCTTGTTGTGGTAGAG 60.290 54.545 0.00 0.00 43.62 2.43
3477 6114 1.697432 CCACCTCCTTGTTGTGGTAGA 59.303 52.381 0.00 0.00 43.62 2.59
3478 6115 2.185004 CCACCTCCTTGTTGTGGTAG 57.815 55.000 0.00 0.00 43.62 3.18
3482 6119 2.908073 GCGCCACCTCCTTGTTGTG 61.908 63.158 0.00 0.00 0.00 3.33
3483 6120 1.764571 TAGCGCCACCTCCTTGTTGT 61.765 55.000 2.29 0.00 0.00 3.32
3484 6121 0.392998 ATAGCGCCACCTCCTTGTTG 60.393 55.000 2.29 0.00 0.00 3.33
3485 6122 0.328258 AATAGCGCCACCTCCTTGTT 59.672 50.000 2.29 0.00 0.00 2.83
3486 6123 0.392998 CAATAGCGCCACCTCCTTGT 60.393 55.000 2.29 0.00 0.00 3.16
3487 6124 0.392998 ACAATAGCGCCACCTCCTTG 60.393 55.000 2.29 0.00 0.00 3.61
3488 6125 0.328258 AACAATAGCGCCACCTCCTT 59.672 50.000 2.29 0.00 0.00 3.36
3489 6126 0.107654 GAACAATAGCGCCACCTCCT 60.108 55.000 2.29 0.00 0.00 3.69
3490 6127 0.107654 AGAACAATAGCGCCACCTCC 60.108 55.000 2.29 0.00 0.00 4.30
3491 6128 1.291132 GAGAACAATAGCGCCACCTC 58.709 55.000 2.29 0.00 0.00 3.85
3492 6129 0.613260 TGAGAACAATAGCGCCACCT 59.387 50.000 2.29 0.00 0.00 4.00
3493 6130 0.727398 GTGAGAACAATAGCGCCACC 59.273 55.000 2.29 0.00 0.00 4.61
3494 6131 0.727398 GGTGAGAACAATAGCGCCAC 59.273 55.000 2.29 0.76 0.00 5.01
3495 6132 0.392461 GGGTGAGAACAATAGCGCCA 60.392 55.000 2.29 0.00 32.69 5.69
3496 6133 1.095807 GGGGTGAGAACAATAGCGCC 61.096 60.000 2.29 0.00 0.00 6.53
3497 6134 0.107654 AGGGGTGAGAACAATAGCGC 60.108 55.000 0.00 0.00 0.00 5.92
3498 6135 2.280628 GAAGGGGTGAGAACAATAGCG 58.719 52.381 0.00 0.00 0.00 4.26
3499 6136 2.280628 CGAAGGGGTGAGAACAATAGC 58.719 52.381 0.00 0.00 0.00 2.97
3519 6156 2.123726 ATTGGCTCCCGGATTGCC 60.124 61.111 20.45 20.45 46.26 4.52
3520 6157 2.492773 CCATTGGCTCCCGGATTGC 61.493 63.158 0.73 3.53 0.00 3.56
3521 6158 2.492773 GCCATTGGCTCCCGGATTG 61.493 63.158 20.66 0.00 46.69 2.67
3522 6159 2.123726 GCCATTGGCTCCCGGATT 60.124 61.111 20.66 0.00 46.69 3.01
3531 6168 2.105528 CAATCAGGCGCCATTGGC 59.894 61.111 31.54 18.10 46.75 4.52
3532 6169 2.105528 GCAATCAGGCGCCATTGG 59.894 61.111 30.07 18.05 31.65 3.16
3540 6177 1.475682 CCTTCTTGAAGGCAATCAGGC 59.524 52.381 15.43 0.00 44.61 4.85
3541 6178 3.015327 CTCCTTCTTGAAGGCAATCAGG 58.985 50.000 21.16 0.24 39.80 3.86
3542 6179 3.015327 CCTCCTTCTTGAAGGCAATCAG 58.985 50.000 21.16 13.85 39.80 2.90
3543 6180 2.644299 TCCTCCTTCTTGAAGGCAATCA 59.356 45.455 21.16 6.15 39.80 2.57
3544 6181 3.277715 CTCCTCCTTCTTGAAGGCAATC 58.722 50.000 21.16 0.00 39.80 2.67
3545 6182 2.620108 GCTCCTCCTTCTTGAAGGCAAT 60.620 50.000 21.16 0.00 39.80 3.56
3546 6183 1.271597 GCTCCTCCTTCTTGAAGGCAA 60.272 52.381 21.16 7.41 39.80 4.52
3547 6184 0.326264 GCTCCTCCTTCTTGAAGGCA 59.674 55.000 21.16 11.30 39.80 4.75
3548 6185 0.617935 AGCTCCTCCTTCTTGAAGGC 59.382 55.000 21.16 11.19 39.80 4.35
3549 6186 2.355615 GGAAGCTCCTCCTTCTTGAAGG 60.356 54.545 20.21 20.21 40.76 3.46
3550 6187 2.355615 GGGAAGCTCCTCCTTCTTGAAG 60.356 54.545 4.45 3.55 40.76 3.02
3551 6188 1.630878 GGGAAGCTCCTCCTTCTTGAA 59.369 52.381 4.45 0.00 40.76 2.69
3552 6189 1.203364 AGGGAAGCTCCTCCTTCTTGA 60.203 52.381 4.45 0.00 40.76 3.02
3553 6190 1.209261 GAGGGAAGCTCCTCCTTCTTG 59.791 57.143 9.85 0.00 45.75 3.02
3554 6191 1.578897 GAGGGAAGCTCCTCCTTCTT 58.421 55.000 9.85 0.00 45.75 2.52
3555 6192 3.315544 GAGGGAAGCTCCTCCTTCT 57.684 57.895 9.85 0.00 45.75 2.85
3561 6198 2.690510 GCAGGGAGGGAAGCTCCT 60.691 66.667 0.00 0.00 40.67 3.69
3562 6199 3.803162 GGCAGGGAGGGAAGCTCC 61.803 72.222 0.00 0.00 40.15 4.70
3563 6200 3.803162 GGGCAGGGAGGGAAGCTC 61.803 72.222 0.00 0.00 0.00 4.09
3566 6203 3.787001 GACGGGCAGGGAGGGAAG 61.787 72.222 0.00 0.00 0.00 3.46
3571 6208 3.528370 CTACGGACGGGCAGGGAG 61.528 72.222 0.00 0.00 0.00 4.30
3572 6209 4.371417 ACTACGGACGGGCAGGGA 62.371 66.667 0.00 0.00 0.00 4.20
3573 6210 3.834799 GACTACGGACGGGCAGGG 61.835 72.222 0.00 0.00 0.00 4.45
3574 6211 3.834799 GGACTACGGACGGGCAGG 61.835 72.222 0.00 0.00 0.00 4.85
3575 6212 4.189188 CGGACTACGGACGGGCAG 62.189 72.222 0.00 0.00 39.42 4.85
3584 6221 0.747283 AGACTGGCTACCGGACTACG 60.747 60.000 9.46 0.00 43.80 3.51
3585 6222 1.023502 GAGACTGGCTACCGGACTAC 58.976 60.000 9.46 0.00 35.26 2.73
3586 6223 0.463295 CGAGACTGGCTACCGGACTA 60.463 60.000 9.46 0.00 35.26 2.59
3587 6224 1.749638 CGAGACTGGCTACCGGACT 60.750 63.158 9.46 0.00 37.59 3.85
3588 6225 2.799371 CGAGACTGGCTACCGGAC 59.201 66.667 9.46 0.00 33.36 4.79
3589 6226 3.138798 GCGAGACTGGCTACCGGA 61.139 66.667 9.46 0.00 33.36 5.14
3590 6227 4.208686 GGCGAGACTGGCTACCGG 62.209 72.222 9.46 0.00 35.68 5.28
3591 6228 4.208686 GGGCGAGACTGGCTACCG 62.209 72.222 9.46 0.00 34.31 4.02
3592 6229 3.851128 GGGGCGAGACTGGCTACC 61.851 72.222 9.46 8.44 34.31 3.18
3593 6230 2.370647 GATGGGGCGAGACTGGCTAC 62.371 65.000 9.46 3.54 34.31 3.58
3594 6231 2.041922 ATGGGGCGAGACTGGCTA 60.042 61.111 9.46 0.00 34.31 3.93
3595 6232 3.474570 GATGGGGCGAGACTGGCT 61.475 66.667 9.46 0.00 34.31 4.75
3596 6233 4.899239 CGATGGGGCGAGACTGGC 62.899 72.222 0.00 0.00 0.00 4.85
3597 6234 4.899239 GCGATGGGGCGAGACTGG 62.899 72.222 0.00 0.00 0.00 4.00
3598 6235 4.899239 GGCGATGGGGCGAGACTG 62.899 72.222 0.00 0.00 0.00 3.51
3605 6242 4.467084 TCTTGACGGCGATGGGGC 62.467 66.667 16.62 0.00 37.98 5.80
3606 6243 2.511600 GTCTTGACGGCGATGGGG 60.512 66.667 16.62 0.00 0.00 4.96
3607 6244 2.885644 CGTCTTGACGGCGATGGG 60.886 66.667 16.62 0.70 0.00 4.00
3608 6245 2.885644 CCGTCTTGACGGCGATGG 60.886 66.667 25.93 0.65 46.76 3.51
3615 6252 1.140407 GCGATTCCTCCGTCTTGACG 61.140 60.000 15.28 15.28 0.00 4.35
3616 6253 0.806492 GGCGATTCCTCCGTCTTGAC 60.806 60.000 0.00 0.00 0.00 3.18
3617 6254 1.515954 GGCGATTCCTCCGTCTTGA 59.484 57.895 0.00 0.00 0.00 3.02
3618 6255 1.521681 GGGCGATTCCTCCGTCTTG 60.522 63.158 0.00 0.00 34.39 3.02
3619 6256 1.987855 TGGGCGATTCCTCCGTCTT 60.988 57.895 0.00 0.00 34.39 3.01
3620 6257 2.363795 TGGGCGATTCCTCCGTCT 60.364 61.111 0.00 0.00 34.39 4.18
3621 6258 2.202892 GTGGGCGATTCCTCCGTC 60.203 66.667 0.00 0.00 34.39 4.79
3622 6259 3.782443 GGTGGGCGATTCCTCCGT 61.782 66.667 0.00 0.00 31.74 4.69
3623 6260 4.547367 GGGTGGGCGATTCCTCCG 62.547 72.222 0.00 0.00 40.41 4.63
3624 6261 3.090532 AGGGTGGGCGATTCCTCC 61.091 66.667 0.00 0.00 39.17 4.30
3625 6262 2.190578 CAGGGTGGGCGATTCCTC 59.809 66.667 0.00 0.00 34.39 3.71
3626 6263 2.231380 AACAGGGTGGGCGATTCCT 61.231 57.895 0.00 0.00 34.39 3.36
3627 6264 2.046285 CAACAGGGTGGGCGATTCC 61.046 63.158 0.00 0.00 0.00 3.01
3628 6265 0.394352 ATCAACAGGGTGGGCGATTC 60.394 55.000 0.00 0.00 0.00 2.52
3629 6266 0.394352 GATCAACAGGGTGGGCGATT 60.394 55.000 0.00 0.00 0.00 3.34
3630 6267 1.224592 GATCAACAGGGTGGGCGAT 59.775 57.895 0.00 0.00 0.00 4.58
3631 6268 1.899437 GAGATCAACAGGGTGGGCGA 61.899 60.000 0.00 0.00 0.00 5.54
3632 6269 1.450312 GAGATCAACAGGGTGGGCG 60.450 63.158 0.00 0.00 0.00 6.13
3633 6270 1.077429 GGAGATCAACAGGGTGGGC 60.077 63.158 0.00 0.00 0.00 5.36
3634 6271 0.698238 TTGGAGATCAACAGGGTGGG 59.302 55.000 0.00 0.00 0.00 4.61
3635 6272 1.340405 CCTTGGAGATCAACAGGGTGG 60.340 57.143 8.95 0.18 0.00 4.61
3636 6273 1.952367 GCCTTGGAGATCAACAGGGTG 60.952 57.143 15.82 0.00 36.34 4.61
3637 6274 0.329596 GCCTTGGAGATCAACAGGGT 59.670 55.000 15.82 0.00 36.34 4.34
3638 6275 0.745845 CGCCTTGGAGATCAACAGGG 60.746 60.000 11.84 11.84 36.96 4.45
3639 6276 1.372087 GCGCCTTGGAGATCAACAGG 61.372 60.000 0.00 0.00 0.00 4.00
3640 6277 1.699656 CGCGCCTTGGAGATCAACAG 61.700 60.000 0.00 0.00 0.00 3.16
3641 6278 1.741401 CGCGCCTTGGAGATCAACA 60.741 57.895 0.00 0.00 0.00 3.33
3642 6279 3.093278 CGCGCCTTGGAGATCAAC 58.907 61.111 0.00 0.00 0.00 3.18
3643 6280 2.819595 GCGCGCCTTGGAGATCAA 60.820 61.111 23.24 0.00 0.00 2.57
3644 6281 4.081185 TGCGCGCCTTGGAGATCA 62.081 61.111 30.77 1.61 0.00 2.92
3645 6282 3.267860 CTGCGCGCCTTGGAGATC 61.268 66.667 30.77 0.00 0.00 2.75
3646 6283 4.087892 ACTGCGCGCCTTGGAGAT 62.088 61.111 30.77 6.64 0.00 2.75
3647 6284 4.742201 GACTGCGCGCCTTGGAGA 62.742 66.667 30.77 6.77 0.00 3.71
3658 6295 1.164662 TAGTAGGCTAGGCGACTGCG 61.165 60.000 32.88 0.00 43.88 5.18
3659 6296 0.311477 GTAGTAGGCTAGGCGACTGC 59.689 60.000 32.88 29.19 43.88 4.40
3660 6297 0.953003 GGTAGTAGGCTAGGCGACTG 59.047 60.000 32.88 0.00 43.88 3.51
3662 6299 1.337387 CAAGGTAGTAGGCTAGGCGAC 59.663 57.143 19.86 19.86 0.00 5.19
3663 6300 1.213678 TCAAGGTAGTAGGCTAGGCGA 59.786 52.381 11.10 2.11 0.00 5.54
3664 6301 1.688772 TCAAGGTAGTAGGCTAGGCG 58.311 55.000 11.10 0.00 0.00 5.52
3665 6302 2.966516 ACATCAAGGTAGTAGGCTAGGC 59.033 50.000 8.55 8.55 0.00 3.93
3666 6303 3.322254 CCACATCAAGGTAGTAGGCTAGG 59.678 52.174 0.00 0.00 0.00 3.02
3667 6304 3.243907 GCCACATCAAGGTAGTAGGCTAG 60.244 52.174 0.00 0.00 37.89 3.42
3668 6305 2.698797 GCCACATCAAGGTAGTAGGCTA 59.301 50.000 0.00 0.00 37.89 3.93
3669 6306 1.486726 GCCACATCAAGGTAGTAGGCT 59.513 52.381 0.00 0.00 37.89 4.58
3670 6307 1.209504 TGCCACATCAAGGTAGTAGGC 59.790 52.381 0.00 0.00 41.15 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.