Multiple sequence alignment - TraesCS3D01G121400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G121400 chr3D 100.000 4632 0 0 1 4632 78094423 78099054 0.000000e+00 8554.0
1 TraesCS3D01G121400 chr3D 95.854 3980 160 5 654 4632 77997384 78001359 0.000000e+00 6431.0
2 TraesCS3D01G121400 chr3D 98.394 436 5 2 1 436 130530190 130530623 0.000000e+00 765.0
3 TraesCS3D01G121400 chr3D 98.614 433 4 2 1 433 168109267 168108837 0.000000e+00 765.0
4 TraesCS3D01G121400 chr3D 98.391 435 5 2 1 435 356839493 356839925 0.000000e+00 763.0
5 TraesCS3D01G121400 chr3B 89.740 3772 332 28 872 4632 124122057 124118330 0.000000e+00 4771.0
6 TraesCS3D01G121400 chr3B 91.170 453 40 0 430 882 124126397 124125945 2.370000e-172 616.0
7 TraesCS3D01G121400 chr7A 91.131 2830 234 12 1051 3865 181013438 181016265 0.000000e+00 3819.0
8 TraesCS3D01G121400 chr7A 90.919 2830 230 19 1051 3865 180842387 180845204 0.000000e+00 3777.0
9 TraesCS3D01G121400 chr7A 90.339 2836 251 15 1051 3865 181167511 181170344 0.000000e+00 3698.0
10 TraesCS3D01G121400 chr7A 89.764 2833 266 18 1051 3865 181049002 181051828 0.000000e+00 3603.0
11 TraesCS3D01G121400 chr7A 89.742 2710 256 16 1172 3865 180983539 180986242 0.000000e+00 3445.0
12 TraesCS3D01G121400 chr7A 96.104 231 9 0 4402 4632 180845197 180845427 1.220000e-100 377.0
13 TraesCS3D01G121400 chr7A 96.104 231 9 0 4402 4632 180986235 180986465 1.220000e-100 377.0
14 TraesCS3D01G121400 chr7A 95.671 231 10 0 4402 4632 181016258 181016488 5.660000e-99 372.0
15 TraesCS3D01G121400 chr7A 94.372 231 13 0 4402 4632 181170337 181170567 5.700000e-94 355.0
16 TraesCS3D01G121400 chr7A 93.370 181 12 0 4402 4582 181051821 181052001 7.640000e-68 268.0
17 TraesCS3D01G121400 chr3A 93.744 2078 104 11 2555 4631 91285685 91283633 0.000000e+00 3094.0
18 TraesCS3D01G121400 chr3A 92.149 2127 148 4 435 2559 91290258 91288149 0.000000e+00 2985.0
19 TraesCS3D01G121400 chr4B 89.795 1803 156 10 2546 4334 476571577 476569789 0.000000e+00 2285.0
20 TraesCS3D01G121400 chr4B 84.124 1896 242 34 662 2517 476573981 476572105 0.000000e+00 1779.0
21 TraesCS3D01G121400 chr7D 93.510 1433 92 1 2434 3865 177169041 177170473 0.000000e+00 2130.0
22 TraesCS3D01G121400 chr7D 94.043 235 14 0 426 660 50815925 50815691 1.580000e-94 357.0
23 TraesCS3D01G121400 chr7D 93.617 235 15 0 426 660 50898323 50898089 7.370000e-93 351.0
24 TraesCS3D01G121400 chr7D 98.396 187 3 0 4446 4632 177170500 177170686 3.460000e-86 329.0
25 TraesCS3D01G121400 chr7D 88.525 61 6 1 2062 2121 616686451 616686391 6.430000e-09 73.1
26 TraesCS3D01G121400 chr4D 89.695 1572 135 7 2546 4102 388250875 388249316 0.000000e+00 1980.0
27 TraesCS3D01G121400 chr4D 83.902 1876 250 33 683 2521 388253298 388251438 0.000000e+00 1744.0
28 TraesCS3D01G121400 chr4D 95.887 462 15 4 1 461 440011498 440011956 0.000000e+00 745.0
29 TraesCS3D01G121400 chr4D 90.000 230 22 1 4106 4335 388249009 388248781 3.500000e-76 296.0
30 TraesCS3D01G121400 chr4D 74.695 573 115 20 1970 2516 122009000 122008432 1.300000e-55 228.0
31 TraesCS3D01G121400 chr4D 83.019 106 11 7 670 774 385521251 385521152 6.380000e-14 89.8
32 TraesCS3D01G121400 chr4D 89.333 75 3 4 678 750 397690714 397690643 6.380000e-14 89.8
33 TraesCS3D01G121400 chr4D 86.747 83 7 4 683 764 460656734 460656813 6.380000e-14 89.8
34 TraesCS3D01G121400 chr4D 86.747 83 7 4 683 764 460660834 460660913 6.380000e-14 89.8
35 TraesCS3D01G121400 chr4D 86.747 83 7 4 683 764 460663204 460663283 6.380000e-14 89.8
36 TraesCS3D01G121400 chr4D 86.747 83 7 4 683 764 460665486 460665565 6.380000e-14 89.8
37 TraesCS3D01G121400 chr4A 83.192 1886 266 31 662 2511 69513590 69511720 0.000000e+00 1679.0
38 TraesCS3D01G121400 chr4A 83.102 1876 265 31 683 2521 69526272 69524412 0.000000e+00 1661.0
39 TraesCS3D01G121400 chr4A 90.323 62 5 1 2060 2120 700557930 700557991 3.840000e-11 80.5
40 TraesCS3D01G121400 chr5D 94.100 661 32 5 1 660 437871541 437872195 0.000000e+00 998.0
41 TraesCS3D01G121400 chr1D 99.070 430 3 1 1 430 402768593 402768165 0.000000e+00 771.0
42 TraesCS3D01G121400 chr1D 94.468 235 13 0 426 660 126436826 126437060 3.410000e-96 363.0
43 TraesCS3D01G121400 chr1D 84.375 96 11 3 670 764 466407035 466407127 1.770000e-14 91.6
44 TraesCS3D01G121400 chr1D 93.182 44 3 0 2060 2103 41913706 41913749 1.080000e-06 65.8
45 TraesCS3D01G121400 chr2D 98.621 435 3 3 1 434 112994106 112993674 0.000000e+00 767.0
46 TraesCS3D01G121400 chr2D 98.840 431 4 1 1 431 537484349 537484778 0.000000e+00 767.0
47 TraesCS3D01G121400 chr2D 99.063 427 3 1 1 427 631212589 631213014 0.000000e+00 765.0
48 TraesCS3D01G121400 chr2D 81.470 626 92 18 3 622 257711860 257712467 4.160000e-135 492.0
49 TraesCS3D01G121400 chr1B 83.683 668 87 16 2 661 176992322 176992975 1.100000e-170 610.0
50 TraesCS3D01G121400 chr1B 81.385 231 43 0 701 931 25472006 25472236 6.120000e-44 189.0
51 TraesCS3D01G121400 chr1B 88.333 60 6 1 2063 2121 280701947 280701888 2.310000e-08 71.3
52 TraesCS3D01G121400 chr1B 95.122 41 2 0 2063 2103 497309435 497309395 1.080000e-06 65.8
53 TraesCS3D01G121400 chr1B 86.538 52 6 1 2071 2121 10339118 10339169 6.470000e-04 56.5
54 TraesCS3D01G121400 chr6A 82.121 660 90 21 2 653 303949593 303948954 1.470000e-149 540.0
55 TraesCS3D01G121400 chr6A 89.474 57 5 1 2060 2115 154052895 154052839 2.310000e-08 71.3
56 TraesCS3D01G121400 chr6A 100.000 32 0 0 2072 2103 39030142 39030173 5.010000e-05 60.2
57 TraesCS3D01G121400 chrUn 82.759 232 38 2 701 931 181266906 181266676 6.080000e-49 206.0
58 TraesCS3D01G121400 chrUn 85.185 81 9 1 670 750 136395250 136395327 3.840000e-11 80.5
59 TraesCS3D01G121400 chr2B 72.301 491 102 19 2039 2521 463276910 463276446 6.290000e-24 122.0
60 TraesCS3D01G121400 chr2B 88.889 63 6 1 2060 2121 765758832 765758770 4.970000e-10 76.8
61 TraesCS3D01G121400 chr5A 85.263 95 10 3 670 764 446614933 446615023 1.370000e-15 95.3
62 TraesCS3D01G121400 chr5A 88.889 63 6 1 2060 2121 547538981 547538919 4.970000e-10 76.8
63 TraesCS3D01G121400 chr7B 85.227 88 7 4 683 768 32088162 32088079 8.260000e-13 86.1
64 TraesCS3D01G121400 chr7B 80.165 121 16 6 2002 2121 748449029 748448916 2.970000e-12 84.2
65 TraesCS3D01G121400 chr7B 90.000 60 5 1 2063 2121 481659889 481659948 4.970000e-10 76.8
66 TraesCS3D01G121400 chr7B 89.091 55 5 1 2060 2113 579805430 579805376 2.990000e-07 67.6
67 TraesCS3D01G121400 chr6D 89.552 67 5 2 695 759 29233697 29233631 2.970000e-12 84.2
68 TraesCS3D01G121400 chr6D 97.872 47 1 0 705 751 103206451 103206497 1.070000e-11 82.4
69 TraesCS3D01G121400 chr6D 83.146 89 11 3 672 759 372045490 372045575 1.380000e-10 78.7
70 TraesCS3D01G121400 chr6D 87.302 63 7 1 2060 2121 466511908 466511846 2.310000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G121400 chr3D 78094423 78099054 4631 False 8554.0 8554 100.000000 1 4632 1 chr3D.!!$F2 4631
1 TraesCS3D01G121400 chr3D 77997384 78001359 3975 False 6431.0 6431 95.854000 654 4632 1 chr3D.!!$F1 3978
2 TraesCS3D01G121400 chr3B 124118330 124126397 8067 True 2693.5 4771 90.455000 430 4632 2 chr3B.!!$R1 4202
3 TraesCS3D01G121400 chr7A 181013438 181016488 3050 False 2095.5 3819 93.401000 1051 4632 2 chr7A.!!$F3 3581
4 TraesCS3D01G121400 chr7A 180842387 180845427 3040 False 2077.0 3777 93.511500 1051 4632 2 chr7A.!!$F1 3581
5 TraesCS3D01G121400 chr7A 181167511 181170567 3056 False 2026.5 3698 92.355500 1051 4632 2 chr7A.!!$F5 3581
6 TraesCS3D01G121400 chr7A 181049002 181052001 2999 False 1935.5 3603 91.567000 1051 4582 2 chr7A.!!$F4 3531
7 TraesCS3D01G121400 chr7A 180983539 180986465 2926 False 1911.0 3445 92.923000 1172 4632 2 chr7A.!!$F2 3460
8 TraesCS3D01G121400 chr3A 91283633 91290258 6625 True 3039.5 3094 92.946500 435 4631 2 chr3A.!!$R1 4196
9 TraesCS3D01G121400 chr4B 476569789 476573981 4192 True 2032.0 2285 86.959500 662 4334 2 chr4B.!!$R1 3672
10 TraesCS3D01G121400 chr7D 177169041 177170686 1645 False 1229.5 2130 95.953000 2434 4632 2 chr7D.!!$F1 2198
11 TraesCS3D01G121400 chr4D 388248781 388253298 4517 True 1340.0 1980 87.865667 683 4335 3 chr4D.!!$R4 3652
12 TraesCS3D01G121400 chr4D 122008432 122009000 568 True 228.0 228 74.695000 1970 2516 1 chr4D.!!$R1 546
13 TraesCS3D01G121400 chr4A 69511720 69513590 1870 True 1679.0 1679 83.192000 662 2511 1 chr4A.!!$R1 1849
14 TraesCS3D01G121400 chr4A 69524412 69526272 1860 True 1661.0 1661 83.102000 683 2521 1 chr4A.!!$R2 1838
15 TraesCS3D01G121400 chr5D 437871541 437872195 654 False 998.0 998 94.100000 1 660 1 chr5D.!!$F1 659
16 TraesCS3D01G121400 chr2D 257711860 257712467 607 False 492.0 492 81.470000 3 622 1 chr2D.!!$F1 619
17 TraesCS3D01G121400 chr1B 176992322 176992975 653 False 610.0 610 83.683000 2 661 1 chr1B.!!$F3 659
18 TraesCS3D01G121400 chr6A 303948954 303949593 639 True 540.0 540 82.121000 2 653 1 chr6A.!!$R2 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 1.152860 TGACGTTTGGCACACCCAT 60.153 52.632 0.00 0.0 44.89 4.00 F
291 294 1.765230 AGAGGCTTACTAGGGACACG 58.235 55.000 0.00 0.0 0.00 4.49 F
1939 5902 1.079127 GCTCCTTCTTGCGGCAGTA 60.079 57.895 1.67 0.0 0.00 2.74 F
2462 6465 0.033208 GGATGGCAGGATTGGTGGAA 60.033 55.000 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 5348 2.288666 AGATATGAACGTTGCGGCATT 58.711 42.857 5.00 0.00 31.15 3.56 R
2134 6099 0.413832 TCCACCTCTAGGGAGCTTGT 59.586 55.000 0.20 0.00 40.27 3.16 R
2842 9892 0.040514 TTGGATTTGTTCACTGCGCG 60.041 50.000 0.00 0.00 0.00 6.86 R
4230 11600 0.251253 TTGTGCTCCATGGACATGCA 60.251 50.000 20.13 20.13 46.16 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.152860 TGACGTTTGGCACACCCAT 60.153 52.632 0.00 0.00 44.89 4.00
71 73 2.279252 CGGTATCCGGGAGTTGCG 60.279 66.667 0.00 0.00 44.15 4.85
185 187 5.181009 GTCTTGTCCATCACATCATTCTCA 58.819 41.667 0.00 0.00 33.90 3.27
187 189 6.988580 GTCTTGTCCATCACATCATTCTCATA 59.011 38.462 0.00 0.00 33.90 2.15
291 294 1.765230 AGAGGCTTACTAGGGACACG 58.235 55.000 0.00 0.00 0.00 4.49
349 352 7.433708 TTCCGGACAATACAATTATAGCATG 57.566 36.000 1.83 0.00 0.00 4.06
443 446 7.206789 TCCAACAACAATATCCTAAGATCCA 57.793 36.000 0.00 0.00 33.67 3.41
467 470 4.998671 AAACATGATCACCAACAACACA 57.001 36.364 0.00 0.00 0.00 3.72
990 4893 7.229308 CCTATATATAGGCCATGCAACATCAT 58.771 38.462 22.98 0.00 43.08 2.45
1285 5198 4.815846 GCCAACATTGACTCCACAAATTTT 59.184 37.500 0.00 0.00 33.44 1.82
1407 5320 2.640826 ACAAGTATTTTCGGGTGGAGGA 59.359 45.455 0.00 0.00 0.00 3.71
1527 5450 3.558418 GGCATAAATTTTGCATGCTCCTG 59.442 43.478 20.33 6.27 43.62 3.86
1600 5523 7.496529 TTTCTCAGTAGGAACAAAACAGATG 57.503 36.000 0.00 0.00 0.00 2.90
1836 5788 1.867575 TCCCCATCCTCCTCTCCTAT 58.132 55.000 0.00 0.00 0.00 2.57
1837 5789 1.434773 TCCCCATCCTCCTCTCCTATG 59.565 57.143 0.00 0.00 0.00 2.23
1939 5902 1.079127 GCTCCTTCTTGCGGCAGTA 60.079 57.895 1.67 0.00 0.00 2.74
2134 6099 2.049156 CGGCTCTCTGCACGACAA 60.049 61.111 0.00 0.00 45.15 3.18
2225 6204 3.371595 GCAACATGGTAGGGGTACTTCAT 60.372 47.826 0.00 0.00 0.00 2.57
2247 6226 1.457643 CCCATCTAGGCTGGACCGA 60.458 63.158 1.44 0.00 46.52 4.69
2283 6279 2.353605 GGTTTGTCCCGGTTATCGTGTA 60.354 50.000 0.00 0.00 37.11 2.90
2314 6311 2.897207 CATCGGCGGTGGAGGTAA 59.103 61.111 13.41 0.00 0.00 2.85
2315 6312 1.520787 CATCGGCGGTGGAGGTAAC 60.521 63.158 13.41 0.00 0.00 2.50
2462 6465 0.033208 GGATGGCAGGATTGGTGGAA 60.033 55.000 0.00 0.00 0.00 3.53
2575 9575 8.210946 TCAGTTCTACATAGGGGAATAACATTG 58.789 37.037 0.00 0.00 0.00 2.82
2659 9708 6.016860 CACAATGAGTTTGACCTCTTCATGAA 60.017 38.462 8.12 8.12 38.76 2.57
2838 9888 1.745087 CAAGGCGTGCCATTTATCACT 59.255 47.619 14.29 0.00 38.92 3.41
2842 9892 1.064060 GCGTGCCATTTATCACTGTCC 59.936 52.381 0.00 0.00 0.00 4.02
2913 9963 8.299570 CAATCAATGTTTCTTACCTAGCAAAGT 58.700 33.333 0.00 0.00 0.00 2.66
2959 10009 2.591715 ACCTGCAGTGTGTTCCGC 60.592 61.111 13.81 0.00 0.00 5.54
3006 10056 0.100861 CGGAAGGACCTTAGCGAGAC 59.899 60.000 6.75 0.00 36.31 3.36
3205 10256 9.476202 TTCGTCATTGGATCTTACAATATACTG 57.524 33.333 0.00 0.00 36.47 2.74
3353 10405 2.488545 GAGAGGCTGAAGACTGAACGTA 59.511 50.000 0.00 0.00 30.09 3.57
3397 10449 5.111293 CAAAACAAGACTTGCCTCAAATGT 58.889 37.500 15.24 0.00 0.00 2.71
3475 10527 5.279406 CGAGAATATGAGGCTCAAGGAAGAT 60.279 44.000 22.84 5.46 0.00 2.40
3476 10528 6.071672 CGAGAATATGAGGCTCAAGGAAGATA 60.072 42.308 22.84 7.76 0.00 1.98
3909 10964 4.082841 TGAATGCTGCACAATAACATCGTT 60.083 37.500 3.57 0.00 0.00 3.85
4054 11121 1.194781 ATCCACCTCGTGCACTCCTT 61.195 55.000 16.19 0.00 31.34 3.36
4158 11528 0.622665 CTTGGGATCCTCTTGTGCCT 59.377 55.000 12.58 0.00 0.00 4.75
4230 11600 5.011943 TGAATAAGCAAGTGCAGGGATTTTT 59.988 36.000 6.00 0.00 45.16 1.94
4353 11723 4.586421 TGGCCAACAACAATGTCAAGATTA 59.414 37.500 0.61 0.00 39.40 1.75
4398 11768 3.698040 GTGAATGGGAGATGAGTGCATTT 59.302 43.478 0.00 0.00 34.11 2.32
4403 11773 5.114764 TGGGAGATGAGTGCATTTATGAA 57.885 39.130 0.00 0.00 34.11 2.57
4406 11776 5.009410 GGGAGATGAGTGCATTTATGAAAGG 59.991 44.000 0.00 0.00 34.11 3.11
4491 11861 2.157738 GCAATGCTCTTGTCTGGTCTT 58.842 47.619 0.00 0.00 0.00 3.01
4497 11867 2.999355 GCTCTTGTCTGGTCTTGTCATC 59.001 50.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 3.735237 TTCCTTAGACCATGAGATCGC 57.265 47.619 0.00 0.00 0.00 4.58
185 187 8.733458 CATTGATAACGGGATCACATCATTTAT 58.267 33.333 0.00 0.00 35.56 1.40
187 189 6.772233 TCATTGATAACGGGATCACATCATTT 59.228 34.615 0.00 0.00 35.56 2.32
291 294 6.371548 ACATGTGTGAATACATAGACCACAAC 59.628 38.462 0.00 0.00 39.17 3.32
443 446 5.126869 TGTGTTGTTGGTGATCATGTTTTCT 59.873 36.000 0.00 0.00 0.00 2.52
467 470 3.117322 TCTTGCCTCTAGGACTAGCTCAT 60.117 47.826 0.00 0.00 37.39 2.90
990 4893 1.551430 CATGCAGGCCTGGATTTTGAA 59.449 47.619 34.80 2.49 39.70 2.69
1285 5198 4.161001 GGACGGAGGGAGTAGTCATTAAAA 59.839 45.833 0.00 0.00 35.49 1.52
1435 5348 2.288666 AGATATGAACGTTGCGGCATT 58.711 42.857 5.00 0.00 31.15 3.56
1527 5450 5.066505 ACGACCATCAGAATTTAAAGCCATC 59.933 40.000 0.00 0.00 0.00 3.51
1600 5523 4.053295 TCAGTAGGTGAAAAAGTACACGC 58.947 43.478 0.00 0.00 37.82 5.34
1703 5626 4.379243 CCGTCTCACGCAAGCCCT 62.379 66.667 0.00 0.00 40.91 5.19
1728 5651 6.801718 TTCAAAATTCGGATCCCTACTCTA 57.198 37.500 6.06 0.00 0.00 2.43
2131 6096 1.625818 CACCTCTAGGGAGCTTGTTGT 59.374 52.381 0.20 0.00 40.27 3.32
2134 6099 0.413832 TCCACCTCTAGGGAGCTTGT 59.586 55.000 0.20 0.00 40.27 3.16
2181 6156 3.808218 ATGCCGGTTGCCAACACCT 62.808 57.895 10.18 0.00 40.16 4.00
2283 6279 2.142319 GCCGATGCAAAAACCAATTGT 58.858 42.857 4.43 0.00 37.47 2.71
2408 6410 1.247567 CACGGCCTTGAATCAACCTT 58.752 50.000 2.29 0.00 0.00 3.50
2490 6493 2.092323 GGATTTCTCCCGACCCAAAAG 58.908 52.381 0.00 0.00 35.28 2.27
2659 9708 5.304101 TGGAATAGGTGATTGTGTTTGCTTT 59.696 36.000 0.00 0.00 0.00 3.51
2838 9888 1.163420 ATTTGTTCACTGCGCGGACA 61.163 50.000 25.98 14.56 0.00 4.02
2842 9892 0.040514 TTGGATTTGTTCACTGCGCG 60.041 50.000 0.00 0.00 0.00 6.86
2959 10009 1.688735 TCATCTGGATAAGGGCAGTCG 59.311 52.381 0.00 0.00 0.00 4.18
3081 10131 9.878599 GACCGATATGTAATTAATTGTGGAAAG 57.121 33.333 11.05 0.00 0.00 2.62
3103 10153 1.337071 ACTGCATATCGTAGGTGACCG 59.663 52.381 0.00 0.00 0.00 4.79
3205 10256 4.339247 CCATGTTCATGAGGGGAATACAAC 59.661 45.833 13.51 0.00 0.00 3.32
3257 10309 9.729023 CATTTATTAATTTCAGGTATGCGTCAA 57.271 29.630 0.00 0.00 0.00 3.18
3301 10353 2.819608 CCAACGATTTTGGGTCTCACAT 59.180 45.455 0.00 0.00 35.96 3.21
3397 10449 3.773119 GAGTTTGTACCATCACCCCTCTA 59.227 47.826 0.00 0.00 0.00 2.43
3475 10527 4.784838 AGATAGGCAATGGCATGTAGGATA 59.215 41.667 10.05 0.00 43.71 2.59
3476 10528 3.590630 AGATAGGCAATGGCATGTAGGAT 59.409 43.478 10.05 0.00 43.71 3.24
3865 10918 3.457610 ACTTGCAACTTCCATGTTTGG 57.542 42.857 0.00 0.00 45.15 3.28
3909 10964 3.562141 CCACGAAATGTTAGGACACACAA 59.438 43.478 0.00 0.00 38.91 3.33
4230 11600 0.251253 TTGTGCTCCATGGACATGCA 60.251 50.000 20.13 20.13 46.16 3.96
4353 11723 2.169144 TGGTCTTCGCATCATCTCACAT 59.831 45.455 0.00 0.00 0.00 3.21
4398 11768 3.244875 TGCTCTTGTGCCTTCCTTTCATA 60.245 43.478 0.00 0.00 0.00 2.15
4403 11773 1.959282 CTTTGCTCTTGTGCCTTCCTT 59.041 47.619 0.00 0.00 0.00 3.36
4406 11776 2.225467 ACTCTTTGCTCTTGTGCCTTC 58.775 47.619 0.00 0.00 0.00 3.46
4491 11861 2.379005 AGCACATCTAGGTCGATGACA 58.621 47.619 7.69 0.00 42.63 3.58
4497 11867 2.672961 TCCAAAGCACATCTAGGTCG 57.327 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.