Multiple sequence alignment - TraesCS3D01G121100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G121100 chr3D 100.000 2396 0 0 1 2396 77322521 77320126 0.000000e+00 4425.0
1 TraesCS3D01G121100 chr3A 98.724 784 9 1 47 830 649158023 649158805 0.000000e+00 1391.0
2 TraesCS3D01G121100 chr3A 88.964 589 51 8 833 1409 91480308 91480894 0.000000e+00 715.0
3 TraesCS3D01G121100 chr3A 87.441 637 40 20 833 1433 91488154 91488786 0.000000e+00 697.0
4 TraesCS3D01G121100 chr3B 85.822 931 89 27 871 1796 123576100 123575208 0.000000e+00 948.0
5 TraesCS3D01G121100 chr3B 88.268 537 38 9 897 1409 123604212 123603677 9.410000e-174 619.0
6 TraesCS3D01G121100 chr3B 87.640 267 26 4 1521 1783 123572581 123572318 1.080000e-78 303.0
7 TraesCS3D01G121100 chr3B 77.689 502 83 17 1479 1970 123603115 123602633 1.810000e-71 279.0
8 TraesCS3D01G121100 chr3B 89.326 178 14 3 1781 1958 123572065 123571893 4.010000e-53 219.0
9 TraesCS3D01G121100 chr3B 97.368 38 1 0 1460 1497 123572622 123572585 5.530000e-07 65.8
10 TraesCS3D01G121100 chr7A 90.957 575 43 4 46 619 398937719 398937153 0.000000e+00 765.0
11 TraesCS3D01G121100 chr7A 80.976 205 16 3 622 825 398936810 398936628 8.930000e-30 141.0
12 TraesCS3D01G121100 chr5A 88.532 436 49 1 1960 2394 635855729 635856164 5.870000e-146 527.0
13 TraesCS3D01G121100 chr5A 85.052 194 14 7 529 708 659292227 659292035 1.460000e-42 183.0
14 TraesCS3D01G121100 chr6D 88.209 441 45 5 1960 2396 227394698 227394261 9.820000e-144 520.0
15 TraesCS3D01G121100 chr6D 96.970 33 1 0 799 831 472234190 472234158 3.330000e-04 56.5
16 TraesCS3D01G121100 chr6A 87.643 437 53 1 1960 2395 315610030 315609594 7.640000e-140 507.0
17 TraesCS3D01G121100 chr4B 87.443 438 54 1 1960 2396 108413567 108414004 9.890000e-139 503.0
18 TraesCS3D01G121100 chr1D 87.500 440 49 5 1960 2396 57071212 57071648 9.890000e-139 503.0
19 TraesCS3D01G121100 chrUn 87.104 442 50 4 1960 2394 27035050 27034609 5.950000e-136 494.0
20 TraesCS3D01G121100 chrUn 85.294 442 59 6 1960 2396 21759725 21760165 3.630000e-123 451.0
21 TraesCS3D01G121100 chr5B 87.045 440 51 6 1960 2396 7850029 7850465 2.140000e-135 492.0
22 TraesCS3D01G121100 chr2B 86.175 434 54 5 1966 2396 567062747 567062317 4.670000e-127 464.0
23 TraesCS3D01G121100 chr2B 78.075 187 31 7 650 831 716121779 716121598 2.520000e-20 110.0
24 TraesCS3D01G121100 chr7B 81.031 543 82 15 292 831 375376500 375377024 1.710000e-111 412.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G121100 chr3D 77320126 77322521 2395 True 4425.00 4425 100.0000 1 2396 1 chr3D.!!$R1 2395
1 TraesCS3D01G121100 chr3A 649158023 649158805 782 False 1391.00 1391 98.7240 47 830 1 chr3A.!!$F3 783
2 TraesCS3D01G121100 chr3A 91480308 91480894 586 False 715.00 715 88.9640 833 1409 1 chr3A.!!$F1 576
3 TraesCS3D01G121100 chr3A 91488154 91488786 632 False 697.00 697 87.4410 833 1433 1 chr3A.!!$F2 600
4 TraesCS3D01G121100 chr3B 123602633 123604212 1579 True 449.00 619 82.9785 897 1970 2 chr3B.!!$R2 1073
5 TraesCS3D01G121100 chr3B 123571893 123576100 4207 True 383.95 948 90.0390 871 1958 4 chr3B.!!$R1 1087
6 TraesCS3D01G121100 chr7A 398936628 398937719 1091 True 453.00 765 85.9665 46 825 2 chr7A.!!$R1 779
7 TraesCS3D01G121100 chr7B 375376500 375377024 524 False 412.00 412 81.0310 292 831 1 chr7B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 346 0.034059 CTTCTCCACGACTTGCCACT 59.966 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2300 6193 0.023732 CGTTCGAACATGCGCTACAG 59.976 55.0 26.71 3.78 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.631962 TCTCTCTCTTCCTCGTTAAAAATCC 58.368 40.000 0.00 0.00 0.00 3.01
25 26 6.437793 TCTCTCTCTTCCTCGTTAAAAATCCT 59.562 38.462 0.00 0.00 0.00 3.24
26 27 7.614583 TCTCTCTCTTCCTCGTTAAAAATCCTA 59.385 37.037 0.00 0.00 0.00 2.94
27 28 7.545489 TCTCTCTTCCTCGTTAAAAATCCTAC 58.455 38.462 0.00 0.00 0.00 3.18
28 29 7.396623 TCTCTCTTCCTCGTTAAAAATCCTACT 59.603 37.037 0.00 0.00 0.00 2.57
29 30 7.904205 TCTCTTCCTCGTTAAAAATCCTACTT 58.096 34.615 0.00 0.00 0.00 2.24
30 31 7.817962 TCTCTTCCTCGTTAAAAATCCTACTTG 59.182 37.037 0.00 0.00 0.00 3.16
31 32 6.877322 TCTTCCTCGTTAAAAATCCTACTTGG 59.123 38.462 0.00 0.00 37.10 3.61
32 33 4.939439 TCCTCGTTAAAAATCCTACTTGGC 59.061 41.667 0.00 0.00 35.26 4.52
33 34 4.698304 CCTCGTTAAAAATCCTACTTGGCA 59.302 41.667 0.00 0.00 35.26 4.92
34 35 5.391629 CCTCGTTAAAAATCCTACTTGGCAC 60.392 44.000 0.00 0.00 35.26 5.01
35 36 5.064558 TCGTTAAAAATCCTACTTGGCACA 58.935 37.500 0.00 0.00 35.26 4.57
36 37 5.049267 TCGTTAAAAATCCTACTTGGCACAC 60.049 40.000 0.00 0.00 39.29 3.82
37 38 5.466819 GTTAAAAATCCTACTTGGCACACC 58.533 41.667 0.00 0.00 39.29 4.16
38 39 3.525800 AAAATCCTACTTGGCACACCT 57.474 42.857 0.00 0.00 39.29 4.00
39 40 3.525800 AAATCCTACTTGGCACACCTT 57.474 42.857 0.00 0.00 39.29 3.50
40 41 4.650972 AAATCCTACTTGGCACACCTTA 57.349 40.909 0.00 0.00 39.29 2.69
41 42 3.914426 ATCCTACTTGGCACACCTTAG 57.086 47.619 0.00 0.00 39.29 2.18
42 43 2.897350 TCCTACTTGGCACACCTTAGA 58.103 47.619 0.00 0.00 39.29 2.10
43 44 2.832129 TCCTACTTGGCACACCTTAGAG 59.168 50.000 0.00 0.00 39.29 2.43
44 45 2.832129 CCTACTTGGCACACCTTAGAGA 59.168 50.000 0.00 0.00 39.29 3.10
49 50 1.267121 GGCACACCTTAGAGACAGGA 58.733 55.000 0.00 0.00 35.14 3.86
344 346 0.034059 CTTCTCCACGACTTGCCACT 59.966 55.000 0.00 0.00 0.00 4.00
480 482 1.310933 ATTGACGCGGGTCTCTACGT 61.311 55.000 29.62 7.17 43.79 3.57
619 623 1.153369 TGCTGCTGCCTCCGAATAC 60.153 57.895 13.47 0.00 38.71 1.89
761 1105 2.094182 CCCTGTTGTACGTGCTGTCTAT 60.094 50.000 4.97 0.00 0.00 1.98
831 1176 3.879295 CTGAACCAATGTACATGCCCTAG 59.121 47.826 9.63 0.92 0.00 3.02
832 1177 3.521531 TGAACCAATGTACATGCCCTAGA 59.478 43.478 9.63 0.00 0.00 2.43
833 1178 3.560636 ACCAATGTACATGCCCTAGAC 57.439 47.619 9.63 0.00 0.00 2.59
834 1179 2.843730 ACCAATGTACATGCCCTAGACA 59.156 45.455 9.63 0.00 0.00 3.41
842 1187 0.107654 ATGCCCTAGACAGGAAACGC 60.108 55.000 0.00 0.00 45.91 4.84
864 1209 4.918201 CGATCCCCAAGCCTCGGC 62.918 72.222 0.00 0.00 42.33 5.54
1019 1395 4.373116 GACGAGCAGCCCCAACGA 62.373 66.667 0.00 0.00 0.00 3.85
1041 1417 1.134965 CACGGAGGTGGAGAAGATCAC 60.135 57.143 0.00 0.00 40.58 3.06
1043 1419 1.187087 GGAGGTGGAGAAGATCACGT 58.813 55.000 0.00 0.00 34.93 4.49
1330 1712 1.079503 GAAGCTTCGCTACACCTTGG 58.920 55.000 11.40 0.00 38.25 3.61
1350 1732 2.569404 GGAGTATAGGGATGGAAGCAGG 59.431 54.545 0.00 0.00 0.00 4.85
1394 1776 4.082408 CCAGGTCGTCAAGTACACTTCATA 60.082 45.833 0.00 0.00 33.11 2.15
1410 1793 2.730382 TCATAGTACAGGCCGTGAAGA 58.270 47.619 10.01 0.00 0.00 2.87
1500 5112 6.593072 TCTTTCGATAAAGCATTGCGATATG 58.407 36.000 12.12 6.80 41.64 1.78
1501 5113 4.926860 TCGATAAAGCATTGCGATATGG 57.073 40.909 12.12 11.18 0.00 2.74
1502 5114 4.314961 TCGATAAAGCATTGCGATATGGT 58.685 39.130 12.12 0.00 37.83 3.55
1503 5115 5.474825 TCGATAAAGCATTGCGATATGGTA 58.525 37.500 12.12 2.50 35.33 3.25
1504 5116 6.106003 TCGATAAAGCATTGCGATATGGTAT 58.894 36.000 12.12 1.46 35.33 2.73
1505 5117 6.593770 TCGATAAAGCATTGCGATATGGTATT 59.406 34.615 12.12 3.59 35.33 1.89
1506 5118 6.901887 CGATAAAGCATTGCGATATGGTATTC 59.098 38.462 12.12 0.66 35.33 1.75
1507 5119 7.201556 CGATAAAGCATTGCGATATGGTATTCT 60.202 37.037 12.12 0.00 35.33 2.40
1508 5120 5.869753 AAGCATTGCGATATGGTATTCTC 57.130 39.130 2.38 0.00 35.33 2.87
1509 5121 5.157940 AGCATTGCGATATGGTATTCTCT 57.842 39.130 2.38 0.00 34.68 3.10
1510 5122 6.286240 AGCATTGCGATATGGTATTCTCTA 57.714 37.500 2.38 0.00 34.68 2.43
1511 5123 6.102663 AGCATTGCGATATGGTATTCTCTAC 58.897 40.000 2.38 0.00 34.68 2.59
1512 5124 5.292101 GCATTGCGATATGGTATTCTCTACC 59.708 44.000 0.00 0.00 38.07 3.18
1513 5125 4.696899 TGCGATATGGTATTCTCTACCG 57.303 45.455 0.00 0.00 40.39 4.02
1514 5126 4.329392 TGCGATATGGTATTCTCTACCGA 58.671 43.478 0.00 0.00 40.39 4.69
1515 5127 4.155462 TGCGATATGGTATTCTCTACCGAC 59.845 45.833 0.00 0.00 40.39 4.79
1516 5128 4.395542 GCGATATGGTATTCTCTACCGACT 59.604 45.833 0.00 0.00 40.39 4.18
1517 5129 5.674068 GCGATATGGTATTCTCTACCGACTG 60.674 48.000 0.00 0.00 40.39 3.51
1518 5130 5.163744 CGATATGGTATTCTCTACCGACTGG 60.164 48.000 0.00 0.00 40.39 4.00
1519 5131 3.657398 TGGTATTCTCTACCGACTGGA 57.343 47.619 0.00 0.00 40.39 3.86
1574 5207 4.668941 CGATATTGTCACGCAAACACATGT 60.669 41.667 0.00 0.00 40.91 3.21
1606 5240 5.694910 TCTCCAATAATAAATCTTCGTCGCC 59.305 40.000 0.00 0.00 0.00 5.54
1621 5255 0.250510 TCGCCAGCCATACACACAAA 60.251 50.000 0.00 0.00 0.00 2.83
1660 5295 5.972382 GTCTATGACGCTCTAGGTTTACTTG 59.028 44.000 0.00 0.00 0.00 3.16
1669 5304 4.377021 TCTAGGTTTACTTGTGTGCACAG 58.623 43.478 22.40 11.69 42.94 3.66
1700 5335 3.381949 GTGCCGTATCCAGTGAATCTAC 58.618 50.000 0.00 0.00 0.00 2.59
1746 5384 4.865925 CCCGTCGTAGTCATTTGTTTGATA 59.134 41.667 0.00 0.00 0.00 2.15
1749 5387 7.292292 CCGTCGTAGTCATTTGTTTGATAAAA 58.708 34.615 0.00 0.00 0.00 1.52
1750 5388 7.799447 CCGTCGTAGTCATTTGTTTGATAAAAA 59.201 33.333 0.00 0.00 0.00 1.94
1779 5417 1.674359 TTCTGGCACATGTTGACGTT 58.326 45.000 0.00 0.00 34.92 3.99
1800 5693 5.800941 CGTTTACCTTGCAAAAACACACTTA 59.199 36.000 19.80 0.00 33.67 2.24
1807 5700 5.392767 TGCAAAAACACACTTACCTTCAA 57.607 34.783 0.00 0.00 0.00 2.69
1814 5707 3.244457 ACACACTTACCTTCAACCTAGCC 60.244 47.826 0.00 0.00 0.00 3.93
1856 5749 3.321968 ACTTGTCTATCTGCATGGCGATA 59.678 43.478 0.00 0.00 0.00 2.92
1895 5788 6.495706 TCGCACGATATGATATGATTAGACC 58.504 40.000 0.00 0.00 0.00 3.85
1939 5832 3.066203 TGCTAGCGAAGAATACATGACGA 59.934 43.478 10.77 0.00 0.00 4.20
1959 5852 3.733077 CGACTTACATGGTTAGGGACGAC 60.733 52.174 0.00 0.00 0.00 4.34
1960 5853 3.167485 ACTTACATGGTTAGGGACGACA 58.833 45.455 0.00 0.00 0.00 4.35
1962 5855 2.762535 ACATGGTTAGGGACGACAAG 57.237 50.000 0.00 0.00 0.00 3.16
1963 5856 1.338769 ACATGGTTAGGGACGACAAGC 60.339 52.381 0.00 0.00 0.00 4.01
1965 5858 1.447314 GGTTAGGGACGACAAGCCG 60.447 63.158 0.00 0.00 0.00 5.52
1966 5859 2.098831 GTTAGGGACGACAAGCCGC 61.099 63.158 0.00 0.00 0.00 6.53
1967 5860 2.575893 TTAGGGACGACAAGCCGCA 61.576 57.895 0.00 0.00 0.00 5.69
1968 5861 2.501223 TTAGGGACGACAAGCCGCAG 62.501 60.000 0.00 0.00 0.00 5.18
1981 5874 3.853330 CGCAGGGCAACATCGTCG 61.853 66.667 0.00 0.00 39.74 5.12
1982 5875 2.742372 GCAGGGCAACATCGTCGT 60.742 61.111 0.00 0.00 39.74 4.34
1983 5876 3.027170 GCAGGGCAACATCGTCGTG 62.027 63.158 0.00 0.00 39.74 4.35
1984 5877 2.742372 AGGGCAACATCGTCGTGC 60.742 61.111 0.00 0.00 39.74 5.34
1985 5878 3.047280 GGGCAACATCGTCGTGCA 61.047 61.111 7.71 0.00 39.74 4.57
1986 5879 2.612567 GGGCAACATCGTCGTGCAA 61.613 57.895 7.71 0.00 39.74 4.08
1987 5880 1.154413 GGCAACATCGTCGTGCAAG 60.154 57.895 7.71 0.00 0.00 4.01
1988 5881 1.154413 GCAACATCGTCGTGCAAGG 60.154 57.895 0.00 0.00 0.00 3.61
1989 5882 1.154413 CAACATCGTCGTGCAAGGC 60.154 57.895 0.00 0.00 0.00 4.35
1990 5883 1.596752 AACATCGTCGTGCAAGGCA 60.597 52.632 4.84 0.00 35.60 4.75
1991 5884 1.163420 AACATCGTCGTGCAAGGCAA 61.163 50.000 4.84 0.00 41.47 4.52
1992 5885 1.163420 ACATCGTCGTGCAAGGCAAA 61.163 50.000 4.84 0.00 41.47 3.68
1993 5886 0.040514 CATCGTCGTGCAAGGCAAAA 60.041 50.000 4.84 0.00 41.47 2.44
1994 5887 0.665835 ATCGTCGTGCAAGGCAAAAA 59.334 45.000 4.84 0.00 41.47 1.94
1995 5888 0.665835 TCGTCGTGCAAGGCAAAAAT 59.334 45.000 4.84 0.00 41.47 1.82
1996 5889 1.052287 CGTCGTGCAAGGCAAAAATC 58.948 50.000 4.84 0.00 41.47 2.17
1997 5890 1.418373 GTCGTGCAAGGCAAAAATCC 58.582 50.000 0.00 0.00 41.47 3.01
1998 5891 0.039617 TCGTGCAAGGCAAAAATCCG 60.040 50.000 0.00 0.00 41.47 4.18
1999 5892 1.008361 CGTGCAAGGCAAAAATCCGG 61.008 55.000 0.00 0.00 41.47 5.14
2000 5893 1.005156 TGCAAGGCAAAAATCCGGC 60.005 52.632 0.00 0.00 34.76 6.13
2001 5894 1.293179 GCAAGGCAAAAATCCGGCT 59.707 52.632 0.00 0.00 40.20 5.52
2002 5895 1.015607 GCAAGGCAAAAATCCGGCTG 61.016 55.000 0.00 0.00 38.18 4.85
2003 5896 0.390209 CAAGGCAAAAATCCGGCTGG 60.390 55.000 4.71 4.71 38.18 4.85
2004 5897 2.125552 GGCAAAAATCCGGCTGGC 60.126 61.111 6.73 0.00 34.14 4.85
2005 5898 2.125552 GCAAAAATCCGGCTGGCC 60.126 61.111 6.73 0.00 34.14 5.36
2006 5899 2.578664 CAAAAATCCGGCTGGCCC 59.421 61.111 6.73 0.00 34.14 5.80
2007 5900 2.683572 AAAAATCCGGCTGGCCCC 60.684 61.111 6.73 0.00 34.14 5.80
2058 5951 2.892425 GCTGCACGATCTTCCCGG 60.892 66.667 0.00 0.00 0.00 5.73
2059 5952 2.892425 CTGCACGATCTTCCCGGC 60.892 66.667 0.00 0.00 0.00 6.13
2060 5953 4.467084 TGCACGATCTTCCCGGCC 62.467 66.667 0.00 0.00 0.00 6.13
2061 5954 4.467084 GCACGATCTTCCCGGCCA 62.467 66.667 2.24 0.00 0.00 5.36
2062 5955 2.511600 CACGATCTTCCCGGCCAC 60.512 66.667 2.24 0.00 0.00 5.01
2063 5956 2.683933 ACGATCTTCCCGGCCACT 60.684 61.111 2.24 0.00 0.00 4.00
2064 5957 2.202932 CGATCTTCCCGGCCACTG 60.203 66.667 2.24 0.00 0.00 3.66
2065 5958 2.514824 GATCTTCCCGGCCACTGC 60.515 66.667 2.24 0.00 0.00 4.40
2075 5968 4.379174 GCCACTGCCGAAGAAGAA 57.621 55.556 0.00 0.00 0.00 2.52
2076 5969 2.166270 GCCACTGCCGAAGAAGAAG 58.834 57.895 0.00 0.00 0.00 2.85
2077 5970 1.301677 GCCACTGCCGAAGAAGAAGG 61.302 60.000 0.00 0.00 0.00 3.46
2078 5971 0.674895 CCACTGCCGAAGAAGAAGGG 60.675 60.000 0.00 0.00 0.00 3.95
2079 5972 1.003233 ACTGCCGAAGAAGAAGGGC 60.003 57.895 0.00 0.00 45.76 5.19
2081 5974 4.397348 GCCGAAGAAGAAGGGCAA 57.603 55.556 0.00 0.00 44.91 4.52
2082 5975 2.175236 GCCGAAGAAGAAGGGCAAG 58.825 57.895 0.00 0.00 44.91 4.01
2083 5976 1.308783 GCCGAAGAAGAAGGGCAAGG 61.309 60.000 0.00 0.00 44.91 3.61
2084 5977 0.036875 CCGAAGAAGAAGGGCAAGGT 59.963 55.000 0.00 0.00 0.00 3.50
2085 5978 1.545651 CCGAAGAAGAAGGGCAAGGTT 60.546 52.381 0.00 0.00 0.00 3.50
2086 5979 2.230660 CGAAGAAGAAGGGCAAGGTTT 58.769 47.619 0.00 0.00 0.00 3.27
2087 5980 2.226674 CGAAGAAGAAGGGCAAGGTTTC 59.773 50.000 0.00 0.00 0.00 2.78
2088 5981 2.294449 AGAAGAAGGGCAAGGTTTCC 57.706 50.000 0.00 0.00 0.00 3.13
2089 5982 0.881796 GAAGAAGGGCAAGGTTTCCG 59.118 55.000 0.00 0.00 0.00 4.30
2090 5983 0.539669 AAGAAGGGCAAGGTTTCCGG 60.540 55.000 0.00 0.00 0.00 5.14
2091 5984 2.600470 AAGGGCAAGGTTTCCGGC 60.600 61.111 0.00 0.00 0.00 6.13
2094 5987 4.038080 GGCAAGGTTTCCGGCGTG 62.038 66.667 6.01 0.00 31.33 5.34
2095 5988 2.975799 GCAAGGTTTCCGGCGTGA 60.976 61.111 6.01 0.00 0.00 4.35
2096 5989 2.548295 GCAAGGTTTCCGGCGTGAA 61.548 57.895 6.01 6.42 0.00 3.18
2097 5990 1.574428 CAAGGTTTCCGGCGTGAAG 59.426 57.895 6.01 0.00 0.00 3.02
2108 6001 2.174349 CGTGAAGCGCAAGAAGGC 59.826 61.111 11.47 0.00 43.02 4.35
2109 6002 2.320587 CGTGAAGCGCAAGAAGGCT 61.321 57.895 11.47 0.00 42.33 4.58
2110 6003 1.499502 GTGAAGCGCAAGAAGGCTC 59.500 57.895 11.47 0.00 38.88 4.70
2111 6004 1.672356 TGAAGCGCAAGAAGGCTCC 60.672 57.895 11.47 0.00 38.88 4.70
2112 6005 1.376553 GAAGCGCAAGAAGGCTCCT 60.377 57.895 11.47 0.00 38.88 3.69
2113 6006 0.108138 GAAGCGCAAGAAGGCTCCTA 60.108 55.000 11.47 0.00 38.88 2.94
2114 6007 0.391793 AAGCGCAAGAAGGCTCCTAC 60.392 55.000 11.47 0.00 38.88 3.18
2115 6008 1.079127 GCGCAAGAAGGCTCCTACA 60.079 57.895 0.30 0.00 43.02 2.74
2116 6009 0.673644 GCGCAAGAAGGCTCCTACAA 60.674 55.000 0.30 0.00 43.02 2.41
2117 6010 1.808411 CGCAAGAAGGCTCCTACAAA 58.192 50.000 0.00 0.00 43.02 2.83
2118 6011 2.151202 CGCAAGAAGGCTCCTACAAAA 58.849 47.619 0.00 0.00 43.02 2.44
2119 6012 2.552315 CGCAAGAAGGCTCCTACAAAAA 59.448 45.455 0.00 0.00 43.02 1.94
2133 6026 4.150994 AAAAAGCCGGCGACTTCA 57.849 50.000 23.20 0.00 0.00 3.02
2134 6027 2.641197 AAAAAGCCGGCGACTTCAT 58.359 47.368 23.20 0.00 0.00 2.57
2135 6028 0.521735 AAAAAGCCGGCGACTTCATC 59.478 50.000 23.20 0.00 0.00 2.92
2136 6029 1.305930 AAAAGCCGGCGACTTCATCC 61.306 55.000 23.20 0.00 0.00 3.51
2137 6030 2.185310 AAAGCCGGCGACTTCATCCT 62.185 55.000 23.20 0.00 0.00 3.24
2138 6031 2.579684 AAGCCGGCGACTTCATCCTC 62.580 60.000 23.20 0.00 0.00 3.71
2139 6032 3.082579 GCCGGCGACTTCATCCTCT 62.083 63.158 12.58 0.00 0.00 3.69
2140 6033 1.066587 CCGGCGACTTCATCCTCTC 59.933 63.158 9.30 0.00 0.00 3.20
2141 6034 1.066587 CGGCGACTTCATCCTCTCC 59.933 63.158 0.00 0.00 0.00 3.71
2142 6035 1.443828 GGCGACTTCATCCTCTCCC 59.556 63.158 0.00 0.00 0.00 4.30
2143 6036 1.045911 GGCGACTTCATCCTCTCCCT 61.046 60.000 0.00 0.00 0.00 4.20
2144 6037 0.387565 GCGACTTCATCCTCTCCCTC 59.612 60.000 0.00 0.00 0.00 4.30
2145 6038 1.036707 CGACTTCATCCTCTCCCTCC 58.963 60.000 0.00 0.00 0.00 4.30
2146 6039 1.036707 GACTTCATCCTCTCCCTCCG 58.963 60.000 0.00 0.00 0.00 4.63
2147 6040 1.045911 ACTTCATCCTCTCCCTCCGC 61.046 60.000 0.00 0.00 0.00 5.54
2148 6041 0.758685 CTTCATCCTCTCCCTCCGCT 60.759 60.000 0.00 0.00 0.00 5.52
2149 6042 0.757188 TTCATCCTCTCCCTCCGCTC 60.757 60.000 0.00 0.00 0.00 5.03
2150 6043 1.152567 CATCCTCTCCCTCCGCTCT 60.153 63.158 0.00 0.00 0.00 4.09
2151 6044 1.152567 ATCCTCTCCCTCCGCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
2152 6045 2.655077 ATCCTCTCCCTCCGCTCTGG 62.655 65.000 0.00 0.00 40.09 3.86
2153 6046 3.535962 CTCTCCCTCCGCTCTGGC 61.536 72.222 0.00 0.00 37.80 4.85
2163 6056 2.809010 GCTCTGGCGAGAGGTACC 59.191 66.667 24.90 2.73 45.40 3.34
2164 6057 2.787567 GCTCTGGCGAGAGGTACCC 61.788 68.421 24.90 6.25 45.40 3.69
2165 6058 2.043248 TCTGGCGAGAGGTACCCC 60.043 66.667 8.74 2.34 0.00 4.95
2166 6059 2.363795 CTGGCGAGAGGTACCCCA 60.364 66.667 8.74 7.50 0.00 4.96
2167 6060 1.987855 CTGGCGAGAGGTACCCCAA 60.988 63.158 8.74 0.00 0.00 4.12
2168 6061 2.240162 CTGGCGAGAGGTACCCCAAC 62.240 65.000 8.74 0.00 0.00 3.77
2169 6062 2.183555 GCGAGAGGTACCCCAACG 59.816 66.667 8.74 10.81 0.00 4.10
2170 6063 2.345760 GCGAGAGGTACCCCAACGA 61.346 63.158 8.74 0.00 0.00 3.85
2171 6064 1.673808 GCGAGAGGTACCCCAACGAT 61.674 60.000 8.74 0.00 0.00 3.73
2172 6065 0.102481 CGAGAGGTACCCCAACGATG 59.898 60.000 8.74 0.00 0.00 3.84
2173 6066 0.179081 GAGAGGTACCCCAACGATGC 60.179 60.000 8.74 0.00 0.00 3.91
2174 6067 1.153229 GAGGTACCCCAACGATGCC 60.153 63.158 8.74 0.00 0.00 4.40
2175 6068 2.124445 GGTACCCCAACGATGCCC 60.124 66.667 0.00 0.00 0.00 5.36
2176 6069 2.676265 GGTACCCCAACGATGCCCT 61.676 63.158 0.00 0.00 0.00 5.19
2177 6070 1.301954 GTACCCCAACGATGCCCTT 59.698 57.895 0.00 0.00 0.00 3.95
2178 6071 0.746923 GTACCCCAACGATGCCCTTC 60.747 60.000 0.00 0.00 0.00 3.46
2179 6072 1.202099 TACCCCAACGATGCCCTTCA 61.202 55.000 0.00 0.00 0.00 3.02
2180 6073 1.304052 CCCCAACGATGCCCTTCAA 60.304 57.895 0.00 0.00 0.00 2.69
2181 6074 1.595093 CCCCAACGATGCCCTTCAAC 61.595 60.000 0.00 0.00 0.00 3.18
2182 6075 1.501741 CCAACGATGCCCTTCAACG 59.498 57.895 0.00 0.00 45.03 4.10
2183 6076 1.501741 CAACGATGCCCTTCAACGG 59.498 57.895 0.00 0.00 44.00 4.44
2184 6077 2.332654 AACGATGCCCTTCAACGGC 61.333 57.895 0.00 0.00 44.00 5.68
2191 6084 3.357079 CCTTCAACGGCGCTGCTT 61.357 61.111 18.15 7.20 0.00 3.91
2192 6085 2.174349 CTTCAACGGCGCTGCTTC 59.826 61.111 18.15 0.00 0.00 3.86
2193 6086 3.314388 CTTCAACGGCGCTGCTTCC 62.314 63.158 18.15 0.00 0.00 3.46
2194 6087 4.617520 TCAACGGCGCTGCTTCCA 62.618 61.111 18.15 0.00 0.00 3.53
2195 6088 4.389576 CAACGGCGCTGCTTCCAC 62.390 66.667 18.15 0.00 0.00 4.02
2201 6094 4.093952 CGCTGCTTCCACCGCAAG 62.094 66.667 0.00 0.00 36.88 4.01
2202 6095 4.410743 GCTGCTTCCACCGCAAGC 62.411 66.667 0.00 0.00 45.59 4.01
2205 6098 3.793144 GCTTCCACCGCAAGCGAG 61.793 66.667 16.97 8.60 42.83 5.03
2206 6099 3.121030 CTTCCACCGCAAGCGAGG 61.121 66.667 16.97 16.54 42.83 4.63
2211 6104 3.923864 ACCGCAAGCGAGGTGTCA 61.924 61.111 16.97 0.00 44.63 3.58
2212 6105 2.664851 CCGCAAGCGAGGTGTCAA 60.665 61.111 16.97 0.00 42.83 3.18
2213 6106 2.551270 CGCAAGCGAGGTGTCAAC 59.449 61.111 9.11 0.00 42.83 3.18
2214 6107 2.551270 GCAAGCGAGGTGTCAACG 59.449 61.111 0.00 0.00 0.00 4.10
2215 6108 1.954146 GCAAGCGAGGTGTCAACGA 60.954 57.895 0.00 0.00 0.00 3.85
2216 6109 1.495584 GCAAGCGAGGTGTCAACGAA 61.496 55.000 0.00 0.00 0.00 3.85
2217 6110 0.934496 CAAGCGAGGTGTCAACGAAA 59.066 50.000 0.00 0.00 0.00 3.46
2218 6111 1.531149 CAAGCGAGGTGTCAACGAAAT 59.469 47.619 0.00 0.00 0.00 2.17
2219 6112 1.148310 AGCGAGGTGTCAACGAAATG 58.852 50.000 0.00 0.00 0.00 2.32
2220 6113 0.165944 GCGAGGTGTCAACGAAATGG 59.834 55.000 0.00 0.00 0.00 3.16
2221 6114 0.165944 CGAGGTGTCAACGAAATGGC 59.834 55.000 0.00 0.00 0.00 4.40
2222 6115 0.521735 GAGGTGTCAACGAAATGGCC 59.478 55.000 0.00 0.00 0.00 5.36
2223 6116 1.209127 GGTGTCAACGAAATGGCCG 59.791 57.895 0.00 0.00 0.00 6.13
2224 6117 1.209127 GTGTCAACGAAATGGCCGG 59.791 57.895 0.00 0.00 0.00 6.13
2225 6118 1.071642 TGTCAACGAAATGGCCGGA 59.928 52.632 5.05 0.00 0.00 5.14
2226 6119 0.535328 TGTCAACGAAATGGCCGGAA 60.535 50.000 5.05 0.00 0.00 4.30
2227 6120 0.168128 GTCAACGAAATGGCCGGAAG 59.832 55.000 5.05 0.00 0.00 3.46
2241 6134 2.295253 CGGAAGGTATGCTTCTTCGT 57.705 50.000 0.00 0.00 40.00 3.85
2242 6135 2.618053 CGGAAGGTATGCTTCTTCGTT 58.382 47.619 0.00 0.00 40.00 3.85
2243 6136 3.000727 CGGAAGGTATGCTTCTTCGTTT 58.999 45.455 0.00 0.00 40.00 3.60
2244 6137 3.435671 CGGAAGGTATGCTTCTTCGTTTT 59.564 43.478 0.00 0.00 40.00 2.43
2245 6138 4.435651 CGGAAGGTATGCTTCTTCGTTTTC 60.436 45.833 0.00 0.00 40.00 2.29
2246 6139 4.695928 GGAAGGTATGCTTCTTCGTTTTCT 59.304 41.667 0.00 0.00 40.00 2.52
2247 6140 5.181433 GGAAGGTATGCTTCTTCGTTTTCTT 59.819 40.000 0.00 0.00 40.00 2.52
2248 6141 6.370718 GGAAGGTATGCTTCTTCGTTTTCTTA 59.629 38.462 0.00 0.00 40.00 2.10
2249 6142 7.065923 GGAAGGTATGCTTCTTCGTTTTCTTAT 59.934 37.037 0.00 0.00 40.00 1.73
2250 6143 9.095065 GAAGGTATGCTTCTTCGTTTTCTTATA 57.905 33.333 0.00 0.00 31.51 0.98
2251 6144 8.421673 AGGTATGCTTCTTCGTTTTCTTATAC 57.578 34.615 0.00 0.00 0.00 1.47
2252 6145 8.258708 AGGTATGCTTCTTCGTTTTCTTATACT 58.741 33.333 0.00 0.00 0.00 2.12
2253 6146 8.880750 GGTATGCTTCTTCGTTTTCTTATACTT 58.119 33.333 0.00 0.00 0.00 2.24
2254 6147 9.690434 GTATGCTTCTTCGTTTTCTTATACTTG 57.310 33.333 0.00 0.00 0.00 3.16
2255 6148 6.599437 TGCTTCTTCGTTTTCTTATACTTGC 58.401 36.000 0.00 0.00 0.00 4.01
2256 6149 6.426937 TGCTTCTTCGTTTTCTTATACTTGCT 59.573 34.615 0.00 0.00 0.00 3.91
2257 6150 7.041372 TGCTTCTTCGTTTTCTTATACTTGCTT 60.041 33.333 0.00 0.00 0.00 3.91
2258 6151 7.478978 GCTTCTTCGTTTTCTTATACTTGCTTC 59.521 37.037 0.00 0.00 0.00 3.86
2259 6152 7.045725 TCTTCGTTTTCTTATACTTGCTTCG 57.954 36.000 0.00 0.00 0.00 3.79
2260 6153 5.199424 TCGTTTTCTTATACTTGCTTCGC 57.801 39.130 0.00 0.00 0.00 4.70
2261 6154 4.927425 TCGTTTTCTTATACTTGCTTCGCT 59.073 37.500 0.00 0.00 0.00 4.93
2262 6155 5.407387 TCGTTTTCTTATACTTGCTTCGCTT 59.593 36.000 0.00 0.00 0.00 4.68
2263 6156 6.073440 TCGTTTTCTTATACTTGCTTCGCTTT 60.073 34.615 0.00 0.00 0.00 3.51
2264 6157 6.577427 CGTTTTCTTATACTTGCTTCGCTTTT 59.423 34.615 0.00 0.00 0.00 2.27
2265 6158 7.201157 CGTTTTCTTATACTTGCTTCGCTTTTC 60.201 37.037 0.00 0.00 0.00 2.29
2266 6159 5.450376 TCTTATACTTGCTTCGCTTTTCG 57.550 39.130 0.00 0.00 40.15 3.46
2267 6160 2.527442 ATACTTGCTTCGCTTTTCGC 57.473 45.000 0.00 0.00 38.27 4.70
2268 6161 0.515564 TACTTGCTTCGCTTTTCGCC 59.484 50.000 0.00 0.00 38.27 5.54
2269 6162 1.282570 CTTGCTTCGCTTTTCGCCA 59.717 52.632 0.00 0.00 38.27 5.69
2270 6163 0.109597 CTTGCTTCGCTTTTCGCCAT 60.110 50.000 0.00 0.00 38.27 4.40
2271 6164 0.313672 TTGCTTCGCTTTTCGCCATT 59.686 45.000 0.00 0.00 38.27 3.16
2272 6165 0.387112 TGCTTCGCTTTTCGCCATTG 60.387 50.000 0.00 0.00 38.27 2.82
2273 6166 1.677353 GCTTCGCTTTTCGCCATTGC 61.677 55.000 0.00 0.00 38.27 3.56
2283 6176 4.147701 GCCATTGCGGTAGCTCAT 57.852 55.556 0.00 0.00 45.42 2.90
2284 6177 1.650912 GCCATTGCGGTAGCTCATG 59.349 57.895 0.00 0.00 45.42 3.07
2285 6178 0.815213 GCCATTGCGGTAGCTCATGA 60.815 55.000 0.00 0.00 45.42 3.07
2286 6179 0.940126 CCATTGCGGTAGCTCATGAC 59.060 55.000 0.00 0.00 45.42 3.06
2287 6180 1.473965 CCATTGCGGTAGCTCATGACT 60.474 52.381 0.00 0.00 45.42 3.41
2288 6181 2.283298 CATTGCGGTAGCTCATGACTT 58.717 47.619 0.00 0.00 45.42 3.01
2289 6182 1.725641 TTGCGGTAGCTCATGACTTG 58.274 50.000 0.00 0.00 45.42 3.16
2290 6183 0.894835 TGCGGTAGCTCATGACTTGA 59.105 50.000 0.00 0.00 45.42 3.02
2291 6184 1.482182 TGCGGTAGCTCATGACTTGAT 59.518 47.619 0.00 0.00 45.42 2.57
2292 6185 1.863454 GCGGTAGCTCATGACTTGATG 59.137 52.381 0.00 0.00 41.01 3.07
2293 6186 2.481969 GCGGTAGCTCATGACTTGATGA 60.482 50.000 0.00 0.00 41.01 2.92
2294 6187 3.119291 CGGTAGCTCATGACTTGATGAC 58.881 50.000 0.00 0.00 32.72 3.06
2295 6188 3.429410 CGGTAGCTCATGACTTGATGACA 60.429 47.826 0.00 0.00 32.72 3.58
2296 6189 3.868077 GGTAGCTCATGACTTGATGACAC 59.132 47.826 0.00 0.00 32.72 3.67
2297 6190 3.977134 AGCTCATGACTTGATGACACT 57.023 42.857 0.00 0.00 32.72 3.55
2298 6191 3.859443 AGCTCATGACTTGATGACACTC 58.141 45.455 0.00 0.00 32.72 3.51
2299 6192 3.260128 AGCTCATGACTTGATGACACTCA 59.740 43.478 0.00 0.00 32.72 3.41
2300 6193 3.370366 GCTCATGACTTGATGACACTCAC 59.630 47.826 0.00 0.00 32.72 3.51
2301 6194 4.818642 CTCATGACTTGATGACACTCACT 58.181 43.478 0.00 0.00 32.72 3.41
2302 6195 4.563061 TCATGACTTGATGACACTCACTG 58.437 43.478 0.00 0.00 0.00 3.66
2303 6196 4.039609 TCATGACTTGATGACACTCACTGT 59.960 41.667 0.00 0.00 34.96 3.55
2304 6197 5.243730 TCATGACTTGATGACACTCACTGTA 59.756 40.000 0.00 0.00 31.03 2.74
2305 6198 5.126396 TGACTTGATGACACTCACTGTAG 57.874 43.478 0.00 0.00 31.03 2.74
2306 6199 3.919216 ACTTGATGACACTCACTGTAGC 58.081 45.455 0.00 0.00 31.03 3.58
2307 6200 2.636768 TGATGACACTCACTGTAGCG 57.363 50.000 0.00 0.00 31.03 4.26
2308 6201 1.272781 GATGACACTCACTGTAGCGC 58.727 55.000 0.00 0.00 31.03 5.92
2309 6202 0.603065 ATGACACTCACTGTAGCGCA 59.397 50.000 11.47 0.00 31.03 6.09
2310 6203 0.603065 TGACACTCACTGTAGCGCAT 59.397 50.000 11.47 0.00 31.03 4.73
2311 6204 0.994995 GACACTCACTGTAGCGCATG 59.005 55.000 11.47 0.00 31.03 4.06
2312 6205 0.318441 ACACTCACTGTAGCGCATGT 59.682 50.000 11.47 0.00 0.00 3.21
2313 6206 1.270305 ACACTCACTGTAGCGCATGTT 60.270 47.619 11.47 0.00 0.00 2.71
2314 6207 1.391485 CACTCACTGTAGCGCATGTTC 59.609 52.381 11.47 0.00 0.00 3.18
2315 6208 0.642291 CTCACTGTAGCGCATGTTCG 59.358 55.000 11.47 0.00 0.00 3.95
2316 6209 0.242555 TCACTGTAGCGCATGTTCGA 59.757 50.000 11.47 0.00 0.00 3.71
2317 6210 1.067693 CACTGTAGCGCATGTTCGAA 58.932 50.000 11.47 0.00 0.00 3.71
2318 6211 1.068474 ACTGTAGCGCATGTTCGAAC 58.932 50.000 21.42 21.42 0.00 3.95
2319 6212 0.023732 CTGTAGCGCATGTTCGAACG 59.976 55.000 22.48 12.23 0.00 3.95
2320 6213 0.387494 TGTAGCGCATGTTCGAACGA 60.387 50.000 22.48 12.54 0.00 3.85
2321 6214 0.921347 GTAGCGCATGTTCGAACGAT 59.079 50.000 22.48 12.33 0.00 3.73
2322 6215 0.920664 TAGCGCATGTTCGAACGATG 59.079 50.000 22.48 23.59 0.00 3.84
2323 6216 1.929714 GCGCATGTTCGAACGATGC 60.930 57.895 32.75 32.75 38.68 3.91
2324 6217 1.296867 CGCATGTTCGAACGATGCC 60.297 57.895 34.22 24.96 38.76 4.40
2325 6218 1.793581 GCATGTTCGAACGATGCCA 59.206 52.632 32.64 16.57 37.41 4.92
2326 6219 0.521242 GCATGTTCGAACGATGCCAC 60.521 55.000 32.64 18.73 37.41 5.01
2327 6220 1.078709 CATGTTCGAACGATGCCACT 58.921 50.000 22.48 0.00 0.00 4.00
2328 6221 1.078709 ATGTTCGAACGATGCCACTG 58.921 50.000 22.48 0.00 0.00 3.66
2329 6222 1.132640 GTTCGAACGATGCCACTGC 59.867 57.895 13.36 0.00 38.26 4.40
2330 6223 1.005037 TTCGAACGATGCCACTGCT 60.005 52.632 0.00 0.00 38.71 4.24
2331 6224 1.291184 TTCGAACGATGCCACTGCTG 61.291 55.000 0.00 0.00 38.71 4.41
2332 6225 1.737735 CGAACGATGCCACTGCTGA 60.738 57.895 0.00 0.00 38.71 4.26
2333 6226 1.690283 CGAACGATGCCACTGCTGAG 61.690 60.000 0.00 0.00 38.71 3.35
2334 6227 0.671781 GAACGATGCCACTGCTGAGT 60.672 55.000 0.00 0.00 38.71 3.41
2335 6228 0.250467 AACGATGCCACTGCTGAGTT 60.250 50.000 0.00 0.00 38.71 3.01
2336 6229 0.671781 ACGATGCCACTGCTGAGTTC 60.672 55.000 0.00 0.00 38.71 3.01
2337 6230 1.690283 CGATGCCACTGCTGAGTTCG 61.690 60.000 0.00 0.00 38.71 3.95
2338 6231 0.671781 GATGCCACTGCTGAGTTCGT 60.672 55.000 0.00 0.00 38.71 3.85
2339 6232 0.671781 ATGCCACTGCTGAGTTCGTC 60.672 55.000 0.00 0.00 38.71 4.20
2340 6233 1.300931 GCCACTGCTGAGTTCGTCA 60.301 57.895 0.00 0.00 33.53 4.35
2341 6234 0.880278 GCCACTGCTGAGTTCGTCAA 60.880 55.000 0.00 0.00 33.60 3.18
2342 6235 0.861837 CCACTGCTGAGTTCGTCAAC 59.138 55.000 0.00 0.00 33.60 3.18
2343 6236 1.539065 CCACTGCTGAGTTCGTCAACT 60.539 52.381 0.00 0.00 46.21 3.16
2344 6237 2.205074 CACTGCTGAGTTCGTCAACTT 58.795 47.619 0.00 0.00 43.37 2.66
2345 6238 2.033407 CACTGCTGAGTTCGTCAACTTG 60.033 50.000 0.00 0.00 43.37 3.16
2346 6239 2.205074 CTGCTGAGTTCGTCAACTTGT 58.795 47.619 0.00 0.00 43.37 3.16
2347 6240 2.609459 CTGCTGAGTTCGTCAACTTGTT 59.391 45.455 0.00 0.00 43.37 2.83
2348 6241 2.351418 TGCTGAGTTCGTCAACTTGTTG 59.649 45.455 7.13 7.13 43.37 3.33
2349 6242 2.286418 GCTGAGTTCGTCAACTTGTTGG 60.286 50.000 12.75 0.00 43.37 3.77
2350 6243 3.194861 CTGAGTTCGTCAACTTGTTGGA 58.805 45.455 12.75 1.79 43.37 3.53
2351 6244 2.933906 TGAGTTCGTCAACTTGTTGGAC 59.066 45.455 12.75 8.99 43.37 4.02
2352 6245 2.933906 GAGTTCGTCAACTTGTTGGACA 59.066 45.455 12.75 0.00 43.37 4.02
2353 6246 2.676342 AGTTCGTCAACTTGTTGGACAC 59.324 45.455 12.75 4.22 40.16 3.67
2354 6247 1.658994 TCGTCAACTTGTTGGACACC 58.341 50.000 12.75 0.00 0.00 4.16
2355 6248 1.066071 TCGTCAACTTGTTGGACACCA 60.066 47.619 12.75 0.00 0.00 4.17
2356 6249 1.740585 CGTCAACTTGTTGGACACCAA 59.259 47.619 12.75 0.00 41.69 3.67
2364 6257 3.690487 TTGGACACCAACACCGTAG 57.310 52.632 0.00 0.00 38.75 3.51
2365 6258 1.121378 TTGGACACCAACACCGTAGA 58.879 50.000 0.00 0.00 38.75 2.59
2366 6259 0.390124 TGGACACCAACACCGTAGAC 59.610 55.000 0.00 0.00 0.00 2.59
2367 6260 0.390124 GGACACCAACACCGTAGACA 59.610 55.000 0.00 0.00 0.00 3.41
2368 6261 1.001633 GGACACCAACACCGTAGACAT 59.998 52.381 0.00 0.00 0.00 3.06
2369 6262 2.334838 GACACCAACACCGTAGACATC 58.665 52.381 0.00 0.00 0.00 3.06
2370 6263 1.336517 ACACCAACACCGTAGACATCG 60.337 52.381 0.00 0.00 0.00 3.84
2371 6264 1.068125 CACCAACACCGTAGACATCGA 60.068 52.381 0.00 0.00 0.00 3.59
2372 6265 1.822990 ACCAACACCGTAGACATCGAT 59.177 47.619 0.00 0.00 0.00 3.59
2373 6266 2.159282 ACCAACACCGTAGACATCGATC 60.159 50.000 0.00 0.00 0.00 3.69
2374 6267 2.159296 CCAACACCGTAGACATCGATCA 60.159 50.000 0.00 0.00 0.00 2.92
2375 6268 3.507786 CAACACCGTAGACATCGATCAA 58.492 45.455 0.00 0.00 0.00 2.57
2376 6269 3.861276 ACACCGTAGACATCGATCAAA 57.139 42.857 0.00 0.00 0.00 2.69
2377 6270 3.508762 ACACCGTAGACATCGATCAAAC 58.491 45.455 0.00 0.00 0.00 2.93
2378 6271 2.858344 CACCGTAGACATCGATCAAACC 59.142 50.000 0.00 0.00 0.00 3.27
2379 6272 2.159142 ACCGTAGACATCGATCAAACCC 60.159 50.000 0.00 0.00 0.00 4.11
2380 6273 2.470821 CGTAGACATCGATCAAACCCC 58.529 52.381 0.00 0.00 0.00 4.95
2381 6274 2.470821 GTAGACATCGATCAAACCCCG 58.529 52.381 0.00 0.00 0.00 5.73
2382 6275 1.191535 AGACATCGATCAAACCCCGA 58.808 50.000 0.00 0.00 36.72 5.14
2383 6276 1.762957 AGACATCGATCAAACCCCGAT 59.237 47.619 0.00 0.00 42.88 4.18
2384 6277 2.135933 GACATCGATCAAACCCCGATC 58.864 52.381 0.00 0.00 40.54 3.69
2387 6280 4.857251 GATCAAACCCCGATCGCT 57.143 55.556 10.32 0.00 30.66 4.93
2388 6281 2.311294 GATCAAACCCCGATCGCTG 58.689 57.895 10.32 5.00 30.66 5.18
2389 6282 0.179084 GATCAAACCCCGATCGCTGA 60.179 55.000 10.32 7.03 30.66 4.26
2390 6283 0.469917 ATCAAACCCCGATCGCTGAT 59.530 50.000 10.32 8.97 0.00 2.90
2391 6284 0.251916 TCAAACCCCGATCGCTGATT 59.748 50.000 10.32 0.61 0.00 2.57
2392 6285 1.094785 CAAACCCCGATCGCTGATTT 58.905 50.000 10.32 4.42 0.00 2.17
2393 6286 1.064060 CAAACCCCGATCGCTGATTTC 59.936 52.381 10.32 0.00 0.00 2.17
2394 6287 0.810031 AACCCCGATCGCTGATTTCG 60.810 55.000 10.32 0.00 0.00 3.46
2395 6288 1.067416 CCCCGATCGCTGATTTCGA 59.933 57.895 10.32 0.00 40.45 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.437793 AGGATTTTTAACGAGGAAGAGAGAGA 59.562 38.462 0.00 0.00 0.00 3.10
2 3 6.607004 AGGATTTTTAACGAGGAAGAGAGA 57.393 37.500 0.00 0.00 0.00 3.10
4 5 7.477945 AGTAGGATTTTTAACGAGGAAGAGA 57.522 36.000 0.00 0.00 0.00 3.10
5 6 7.064728 CCAAGTAGGATTTTTAACGAGGAAGAG 59.935 40.741 0.00 0.00 41.22 2.85
6 7 6.877322 CCAAGTAGGATTTTTAACGAGGAAGA 59.123 38.462 0.00 0.00 41.22 2.87
7 8 6.403309 GCCAAGTAGGATTTTTAACGAGGAAG 60.403 42.308 0.00 0.00 41.22 3.46
8 9 5.413523 GCCAAGTAGGATTTTTAACGAGGAA 59.586 40.000 0.00 0.00 41.22 3.36
9 10 4.939439 GCCAAGTAGGATTTTTAACGAGGA 59.061 41.667 0.00 0.00 41.22 3.71
10 11 4.698304 TGCCAAGTAGGATTTTTAACGAGG 59.302 41.667 0.00 0.00 41.22 4.63
11 12 5.180492 TGTGCCAAGTAGGATTTTTAACGAG 59.820 40.000 0.00 0.00 41.22 4.18
12 13 5.049267 GTGTGCCAAGTAGGATTTTTAACGA 60.049 40.000 0.00 0.00 41.22 3.85
13 14 5.151389 GTGTGCCAAGTAGGATTTTTAACG 58.849 41.667 0.00 0.00 41.22 3.18
14 15 5.243060 AGGTGTGCCAAGTAGGATTTTTAAC 59.757 40.000 0.00 0.00 41.22 2.01
15 16 5.390387 AGGTGTGCCAAGTAGGATTTTTAA 58.610 37.500 0.00 0.00 41.22 1.52
16 17 4.993028 AGGTGTGCCAAGTAGGATTTTTA 58.007 39.130 0.00 0.00 41.22 1.52
17 18 3.844640 AGGTGTGCCAAGTAGGATTTTT 58.155 40.909 0.00 0.00 41.22 1.94
18 19 3.525800 AGGTGTGCCAAGTAGGATTTT 57.474 42.857 0.00 0.00 41.22 1.82
19 20 3.525800 AAGGTGTGCCAAGTAGGATTT 57.474 42.857 0.00 0.00 41.22 2.17
20 21 3.844211 TCTAAGGTGTGCCAAGTAGGATT 59.156 43.478 0.00 0.00 41.22 3.01
21 22 3.450904 TCTAAGGTGTGCCAAGTAGGAT 58.549 45.455 0.00 0.00 41.22 3.24
22 23 2.832129 CTCTAAGGTGTGCCAAGTAGGA 59.168 50.000 0.00 0.00 41.22 2.94
23 24 2.832129 TCTCTAAGGTGTGCCAAGTAGG 59.168 50.000 0.00 0.00 41.84 3.18
24 25 3.258372 TGTCTCTAAGGTGTGCCAAGTAG 59.742 47.826 0.00 0.00 37.19 2.57
25 26 3.236047 TGTCTCTAAGGTGTGCCAAGTA 58.764 45.455 0.00 0.00 37.19 2.24
26 27 2.037772 CTGTCTCTAAGGTGTGCCAAGT 59.962 50.000 0.00 0.00 37.19 3.16
27 28 2.613977 CCTGTCTCTAAGGTGTGCCAAG 60.614 54.545 0.00 0.00 37.19 3.61
28 29 1.347707 CCTGTCTCTAAGGTGTGCCAA 59.652 52.381 0.00 0.00 37.19 4.52
29 30 0.976641 CCTGTCTCTAAGGTGTGCCA 59.023 55.000 0.00 0.00 37.19 4.92
30 31 1.066787 GTCCTGTCTCTAAGGTGTGCC 60.067 57.143 0.00 0.00 36.14 5.01
31 32 1.618837 TGTCCTGTCTCTAAGGTGTGC 59.381 52.381 0.00 0.00 36.14 4.57
32 33 3.259374 ACATGTCCTGTCTCTAAGGTGTG 59.741 47.826 0.00 0.00 36.14 3.82
33 34 3.511477 ACATGTCCTGTCTCTAAGGTGT 58.489 45.455 0.00 0.00 36.14 4.16
34 35 4.462834 TGTACATGTCCTGTCTCTAAGGTG 59.537 45.833 0.00 0.00 39.39 4.00
35 36 4.673968 TGTACATGTCCTGTCTCTAAGGT 58.326 43.478 0.00 0.00 39.39 3.50
36 37 5.661056 TTGTACATGTCCTGTCTCTAAGG 57.339 43.478 0.00 0.00 39.39 2.69
37 38 6.867550 TCATTGTACATGTCCTGTCTCTAAG 58.132 40.000 0.00 0.00 39.39 2.18
38 39 6.850752 TCATTGTACATGTCCTGTCTCTAA 57.149 37.500 0.00 0.00 39.39 2.10
39 40 6.381133 ACATCATTGTACATGTCCTGTCTCTA 59.619 38.462 0.00 0.00 39.39 2.43
40 41 5.188555 ACATCATTGTACATGTCCTGTCTCT 59.811 40.000 0.00 0.00 39.39 3.10
41 42 5.423015 ACATCATTGTACATGTCCTGTCTC 58.577 41.667 0.00 0.00 39.39 3.36
42 43 5.426689 ACATCATTGTACATGTCCTGTCT 57.573 39.130 0.00 0.00 39.39 3.41
344 346 1.988107 AGAGAATTGGAGGACTGGCAA 59.012 47.619 0.00 0.00 0.00 4.52
619 623 7.970384 TCTTATCACACTTGCCTAAATTAACG 58.030 34.615 0.00 0.00 0.00 3.18
761 1105 6.490381 GTCCATGTCATCTATAGACCACACTA 59.510 42.308 14.89 4.55 35.15 2.74
842 1187 2.190578 GGCTTGGGGATCGACAGG 59.809 66.667 0.00 0.00 0.00 4.00
864 1209 5.164051 CCGCGGACCGTAGTATATATATACG 60.164 48.000 24.07 15.36 41.40 3.06
868 1213 2.872245 GCCGCGGACCGTAGTATATATA 59.128 50.000 33.48 0.00 34.38 0.86
1012 1388 1.959226 CACCTCCGTGTTCGTTGGG 60.959 63.158 0.00 0.00 35.10 4.12
1019 1395 1.550976 GATCTTCTCCACCTCCGTGTT 59.449 52.381 0.00 0.00 38.41 3.32
1330 1712 2.569404 CCCTGCTTCCATCCCTATACTC 59.431 54.545 0.00 0.00 0.00 2.59
1350 1732 2.237392 GCCATCCTCCTGGTACATATCC 59.763 54.545 0.00 0.00 38.20 2.59
1394 1776 1.272769 GAAGTCTTCACGGCCTGTACT 59.727 52.381 7.76 0.00 0.00 2.73
1410 1793 3.346426 GGAACCAGCACCATGAAGT 57.654 52.632 0.00 0.00 0.00 3.01
1500 5112 3.553904 ACTCCAGTCGGTAGAGAATACC 58.446 50.000 0.00 0.00 0.00 2.73
1501 5113 9.316730 CTATATACTCCAGTCGGTAGAGAATAC 57.683 40.741 0.00 0.00 0.00 1.89
1502 5114 7.986320 GCTATATACTCCAGTCGGTAGAGAATA 59.014 40.741 0.00 0.00 0.00 1.75
1503 5115 6.824704 GCTATATACTCCAGTCGGTAGAGAAT 59.175 42.308 0.00 0.00 0.00 2.40
1504 5116 6.171921 GCTATATACTCCAGTCGGTAGAGAA 58.828 44.000 0.00 0.00 0.00 2.87
1505 5117 5.247792 TGCTATATACTCCAGTCGGTAGAGA 59.752 44.000 0.00 0.00 0.00 3.10
1506 5118 5.489249 TGCTATATACTCCAGTCGGTAGAG 58.511 45.833 0.00 0.00 0.00 2.43
1507 5119 5.494390 TGCTATATACTCCAGTCGGTAGA 57.506 43.478 0.00 0.00 0.00 2.59
1508 5120 6.151312 ACAATGCTATATACTCCAGTCGGTAG 59.849 42.308 0.00 0.00 0.00 3.18
1509 5121 6.008331 ACAATGCTATATACTCCAGTCGGTA 58.992 40.000 0.00 0.00 0.00 4.02
1510 5122 4.833380 ACAATGCTATATACTCCAGTCGGT 59.167 41.667 0.00 0.00 0.00 4.69
1511 5123 5.392767 ACAATGCTATATACTCCAGTCGG 57.607 43.478 0.00 0.00 0.00 4.79
1512 5124 7.762382 TGATACAATGCTATATACTCCAGTCG 58.238 38.462 0.00 0.00 0.00 4.18
1513 5125 9.579768 CTTGATACAATGCTATATACTCCAGTC 57.420 37.037 0.00 0.00 0.00 3.51
1514 5126 9.094578 ACTTGATACAATGCTATATACTCCAGT 57.905 33.333 0.00 0.00 0.00 4.00
1600 5234 2.125713 TGTGTATGGCTGGCGACG 60.126 61.111 0.00 0.00 0.00 5.12
1628 5263 5.470437 CCTAGAGCGTCATAGACAGACATAA 59.530 44.000 0.00 0.00 35.77 1.90
1633 5268 3.562343 ACCTAGAGCGTCATAGACAGA 57.438 47.619 0.00 0.00 32.09 3.41
1639 5274 5.184479 ACACAAGTAAACCTAGAGCGTCATA 59.816 40.000 0.00 0.00 0.00 2.15
1660 5295 3.434637 CACCTTGTAAAACTGTGCACAC 58.565 45.455 17.42 5.61 0.00 3.82
1669 5304 3.075884 TGGATACGGCACCTTGTAAAAC 58.924 45.455 0.00 0.00 42.51 2.43
1749 5387 7.714377 TCAACATGTGCCAGAAACATAATTTTT 59.286 29.630 0.00 0.00 36.10 1.94
1750 5388 7.171337 GTCAACATGTGCCAGAAACATAATTTT 59.829 33.333 0.00 0.00 36.10 1.82
1751 5389 6.646240 GTCAACATGTGCCAGAAACATAATTT 59.354 34.615 0.00 0.00 36.10 1.82
1756 5394 2.030893 CGTCAACATGTGCCAGAAACAT 60.031 45.455 0.00 0.00 38.81 2.71
1765 5403 3.296628 CAAGGTAAACGTCAACATGTGC 58.703 45.455 0.00 0.00 0.00 4.57
1769 5407 4.640789 TTTGCAAGGTAAACGTCAACAT 57.359 36.364 0.00 0.00 0.00 2.71
1779 5417 5.419471 AGGTAAGTGTGTTTTTGCAAGGTAA 59.581 36.000 0.00 0.00 0.00 2.85
1800 5693 1.685820 GCTGGGCTAGGTTGAAGGT 59.314 57.895 0.00 0.00 0.00 3.50
1807 5700 3.706373 CGTGTGGCTGGGCTAGGT 61.706 66.667 0.00 0.00 0.00 3.08
1814 5707 0.452987 CCATGAAATCGTGTGGCTGG 59.547 55.000 0.00 0.00 0.00 4.85
1895 5788 0.249911 GGTAGCCGCCCTAGTGATTG 60.250 60.000 0.00 0.00 0.00 2.67
1939 5832 3.167485 TGTCGTCCCTAACCATGTAAGT 58.833 45.455 0.00 0.00 0.00 2.24
1963 5856 3.499737 GACGATGTTGCCCTGCGG 61.500 66.667 0.00 0.00 0.00 5.69
1965 5858 2.742372 ACGACGATGTTGCCCTGC 60.742 61.111 0.00 0.00 0.00 4.85
1966 5859 3.027170 GCACGACGATGTTGCCCTG 62.027 63.158 0.00 0.00 0.00 4.45
1967 5860 2.742372 GCACGACGATGTTGCCCT 60.742 61.111 0.00 0.00 0.00 5.19
1968 5861 2.513065 CTTGCACGACGATGTTGCCC 62.513 60.000 0.00 0.00 0.00 5.36
1969 5862 1.154413 CTTGCACGACGATGTTGCC 60.154 57.895 0.00 0.00 0.00 4.52
1971 5864 1.154413 GCCTTGCACGACGATGTTG 60.154 57.895 0.00 0.00 0.00 3.33
1972 5865 1.163420 TTGCCTTGCACGACGATGTT 61.163 50.000 0.00 0.00 38.71 2.71
1973 5866 1.163420 TTTGCCTTGCACGACGATGT 61.163 50.000 0.00 0.00 38.71 3.06
1974 5867 0.040514 TTTTGCCTTGCACGACGATG 60.041 50.000 0.00 0.00 38.71 3.84
1975 5868 0.665835 TTTTTGCCTTGCACGACGAT 59.334 45.000 0.00 0.00 38.71 3.73
1976 5869 0.665835 ATTTTTGCCTTGCACGACGA 59.334 45.000 0.00 0.00 38.71 4.20
1977 5870 1.052287 GATTTTTGCCTTGCACGACG 58.948 50.000 0.00 0.00 38.71 5.12
1978 5871 1.418373 GGATTTTTGCCTTGCACGAC 58.582 50.000 0.00 0.00 38.71 4.34
1979 5872 0.039617 CGGATTTTTGCCTTGCACGA 60.040 50.000 0.00 0.00 38.71 4.35
1980 5873 1.008361 CCGGATTTTTGCCTTGCACG 61.008 55.000 0.00 0.00 38.71 5.34
1981 5874 1.291184 GCCGGATTTTTGCCTTGCAC 61.291 55.000 5.05 0.00 38.71 4.57
1982 5875 1.005156 GCCGGATTTTTGCCTTGCA 60.005 52.632 5.05 0.00 36.47 4.08
1983 5876 1.015607 CAGCCGGATTTTTGCCTTGC 61.016 55.000 5.05 0.00 0.00 4.01
1984 5877 0.390209 CCAGCCGGATTTTTGCCTTG 60.390 55.000 5.05 0.00 0.00 3.61
1985 5878 1.974543 CCAGCCGGATTTTTGCCTT 59.025 52.632 5.05 0.00 0.00 4.35
1986 5879 2.649129 GCCAGCCGGATTTTTGCCT 61.649 57.895 5.05 0.00 0.00 4.75
1987 5880 2.125552 GCCAGCCGGATTTTTGCC 60.126 61.111 5.05 0.00 0.00 4.52
1988 5881 2.125552 GGCCAGCCGGATTTTTGC 60.126 61.111 5.05 0.00 0.00 3.68
1989 5882 2.578664 GGGCCAGCCGGATTTTTG 59.421 61.111 5.05 0.00 36.85 2.44
1990 5883 2.683572 GGGGCCAGCCGGATTTTT 60.684 61.111 5.05 0.00 36.85 1.94
2037 5930 3.918220 GAAGATCGTGCAGCGGCG 61.918 66.667 0.51 0.51 45.35 6.46
2038 5931 3.567797 GGAAGATCGTGCAGCGGC 61.568 66.667 0.31 0.31 41.72 6.53
2039 5932 2.892425 GGGAAGATCGTGCAGCGG 60.892 66.667 2.22 0.00 41.72 5.52
2040 5933 3.257561 CGGGAAGATCGTGCAGCG 61.258 66.667 2.22 0.00 43.01 5.18
2041 5934 2.892425 CCGGGAAGATCGTGCAGC 60.892 66.667 2.22 0.00 0.00 5.25
2042 5935 2.892425 GCCGGGAAGATCGTGCAG 60.892 66.667 2.18 0.00 0.00 4.41
2043 5936 4.467084 GGCCGGGAAGATCGTGCA 62.467 66.667 2.18 0.00 0.00 4.57
2044 5937 4.467084 TGGCCGGGAAGATCGTGC 62.467 66.667 2.18 0.00 0.00 5.34
2045 5938 2.511600 GTGGCCGGGAAGATCGTG 60.512 66.667 2.18 0.00 0.00 4.35
2046 5939 2.683933 AGTGGCCGGGAAGATCGT 60.684 61.111 2.18 0.00 0.00 3.73
2047 5940 2.202932 CAGTGGCCGGGAAGATCG 60.203 66.667 2.18 0.00 0.00 3.69
2048 5941 2.514824 GCAGTGGCCGGGAAGATC 60.515 66.667 2.18 0.00 0.00 2.75
2058 5951 1.301677 CCTTCTTCTTCGGCAGTGGC 61.302 60.000 6.62 6.62 40.13 5.01
2059 5952 0.674895 CCCTTCTTCTTCGGCAGTGG 60.675 60.000 0.00 0.00 0.00 4.00
2060 5953 1.301677 GCCCTTCTTCTTCGGCAGTG 61.302 60.000 0.00 0.00 41.25 3.66
2061 5954 1.003233 GCCCTTCTTCTTCGGCAGT 60.003 57.895 0.00 0.00 41.25 4.40
2062 5955 1.003355 TGCCCTTCTTCTTCGGCAG 60.003 57.895 0.00 0.00 46.26 4.85
2064 5957 1.308783 CCTTGCCCTTCTTCTTCGGC 61.309 60.000 0.00 0.00 41.99 5.54
2065 5958 0.036875 ACCTTGCCCTTCTTCTTCGG 59.963 55.000 0.00 0.00 0.00 4.30
2066 5959 1.897560 AACCTTGCCCTTCTTCTTCG 58.102 50.000 0.00 0.00 0.00 3.79
2067 5960 2.558795 GGAAACCTTGCCCTTCTTCTTC 59.441 50.000 0.00 0.00 0.00 2.87
2068 5961 2.598565 GGAAACCTTGCCCTTCTTCTT 58.401 47.619 0.00 0.00 0.00 2.52
2069 5962 1.545651 CGGAAACCTTGCCCTTCTTCT 60.546 52.381 0.00 0.00 0.00 2.85
2070 5963 0.881796 CGGAAACCTTGCCCTTCTTC 59.118 55.000 0.00 0.00 0.00 2.87
2071 5964 0.539669 CCGGAAACCTTGCCCTTCTT 60.540 55.000 0.00 0.00 0.00 2.52
2072 5965 1.074951 CCGGAAACCTTGCCCTTCT 59.925 57.895 0.00 0.00 0.00 2.85
2073 5966 2.636412 GCCGGAAACCTTGCCCTTC 61.636 63.158 5.05 0.00 0.00 3.46
2074 5967 2.600470 GCCGGAAACCTTGCCCTT 60.600 61.111 5.05 0.00 0.00 3.95
2077 5970 4.038080 CACGCCGGAAACCTTGCC 62.038 66.667 5.05 0.00 0.00 4.52
2078 5971 2.458006 CTTCACGCCGGAAACCTTGC 62.458 60.000 5.05 0.00 0.00 4.01
2079 5972 1.574428 CTTCACGCCGGAAACCTTG 59.426 57.895 5.05 0.00 0.00 3.61
2080 5973 2.258726 GCTTCACGCCGGAAACCTT 61.259 57.895 5.05 0.00 0.00 3.50
2081 5974 2.668550 GCTTCACGCCGGAAACCT 60.669 61.111 5.05 0.00 0.00 3.50
2082 5975 4.084888 CGCTTCACGCCGGAAACC 62.085 66.667 5.05 0.00 34.21 3.27
2092 5985 1.499502 GAGCCTTCTTGCGCTTCAC 59.500 57.895 9.73 0.00 34.84 3.18
2093 5986 1.672356 GGAGCCTTCTTGCGCTTCA 60.672 57.895 9.73 0.00 34.84 3.02
2094 5987 0.108138 TAGGAGCCTTCTTGCGCTTC 60.108 55.000 9.73 0.00 34.84 3.86
2095 5988 0.391793 GTAGGAGCCTTCTTGCGCTT 60.392 55.000 9.73 0.00 34.84 4.68
2096 5989 1.219393 GTAGGAGCCTTCTTGCGCT 59.781 57.895 9.73 0.00 38.27 5.92
2097 5990 0.673644 TTGTAGGAGCCTTCTTGCGC 60.674 55.000 0.00 0.00 36.02 6.09
2098 5991 1.808411 TTTGTAGGAGCCTTCTTGCG 58.192 50.000 0.00 0.00 36.02 4.85
2116 6009 0.521735 GATGAAGTCGCCGGCTTTTT 59.478 50.000 26.68 15.25 0.00 1.94
2117 6010 1.305930 GGATGAAGTCGCCGGCTTTT 61.306 55.000 26.68 15.63 0.00 2.27
2118 6011 1.745489 GGATGAAGTCGCCGGCTTT 60.745 57.895 26.68 16.02 0.00 3.51
2119 6012 2.125106 GGATGAAGTCGCCGGCTT 60.125 61.111 26.68 12.68 0.00 4.35
2120 6013 3.077556 AGGATGAAGTCGCCGGCT 61.078 61.111 26.68 4.89 0.00 5.52
2121 6014 2.586357 GAGGATGAAGTCGCCGGC 60.586 66.667 19.07 19.07 0.00 6.13
2122 6015 1.066587 GAGAGGATGAAGTCGCCGG 59.933 63.158 0.00 0.00 0.00 6.13
2123 6016 1.066587 GGAGAGGATGAAGTCGCCG 59.933 63.158 0.00 0.00 0.00 6.46
2124 6017 1.045911 AGGGAGAGGATGAAGTCGCC 61.046 60.000 0.00 0.00 32.21 5.54
2125 6018 0.387565 GAGGGAGAGGATGAAGTCGC 59.612 60.000 0.00 0.00 0.00 5.19
2126 6019 1.036707 GGAGGGAGAGGATGAAGTCG 58.963 60.000 0.00 0.00 0.00 4.18
2127 6020 1.036707 CGGAGGGAGAGGATGAAGTC 58.963 60.000 0.00 0.00 0.00 3.01
2128 6021 1.045911 GCGGAGGGAGAGGATGAAGT 61.046 60.000 0.00 0.00 0.00 3.01
2129 6022 0.758685 AGCGGAGGGAGAGGATGAAG 60.759 60.000 0.00 0.00 0.00 3.02
2130 6023 0.757188 GAGCGGAGGGAGAGGATGAA 60.757 60.000 0.00 0.00 0.00 2.57
2131 6024 1.152652 GAGCGGAGGGAGAGGATGA 60.153 63.158 0.00 0.00 0.00 2.92
2132 6025 1.152567 AGAGCGGAGGGAGAGGATG 60.153 63.158 0.00 0.00 0.00 3.51
2133 6026 1.152567 CAGAGCGGAGGGAGAGGAT 60.153 63.158 0.00 0.00 0.00 3.24
2134 6027 2.277072 CAGAGCGGAGGGAGAGGA 59.723 66.667 0.00 0.00 0.00 3.71
2135 6028 2.837291 CCAGAGCGGAGGGAGAGG 60.837 72.222 0.00 0.00 36.56 3.69
2136 6029 3.535962 GCCAGAGCGGAGGGAGAG 61.536 72.222 0.00 0.00 36.56 3.20
2146 6039 2.809010 GGTACCTCTCGCCAGAGC 59.191 66.667 4.06 0.00 44.61 4.09
2159 6052 0.746923 GAAGGGCATCGTTGGGGTAC 60.747 60.000 0.00 0.00 0.00 3.34
2160 6053 1.202099 TGAAGGGCATCGTTGGGGTA 61.202 55.000 0.00 0.00 0.00 3.69
2161 6054 2.075355 TTGAAGGGCATCGTTGGGGT 62.075 55.000 0.00 0.00 0.00 4.95
2162 6055 1.304052 TTGAAGGGCATCGTTGGGG 60.304 57.895 0.00 0.00 0.00 4.96
2163 6056 1.883021 GTTGAAGGGCATCGTTGGG 59.117 57.895 0.00 0.00 0.00 4.12
2164 6057 1.501741 CGTTGAAGGGCATCGTTGG 59.498 57.895 0.00 0.00 35.52 3.77
2165 6058 1.501741 CCGTTGAAGGGCATCGTTG 59.498 57.895 0.00 0.00 37.87 4.10
2166 6059 3.981308 CCGTTGAAGGGCATCGTT 58.019 55.556 0.00 0.00 37.87 3.85
2174 6067 3.314388 GAAGCAGCGCCGTTGAAGG 62.314 63.158 4.74 0.00 0.00 3.46
2175 6068 2.174349 GAAGCAGCGCCGTTGAAG 59.826 61.111 4.74 0.00 0.00 3.02
2176 6069 3.353836 GGAAGCAGCGCCGTTGAA 61.354 61.111 4.74 0.00 0.00 2.69
2177 6070 4.617520 TGGAAGCAGCGCCGTTGA 62.618 61.111 4.74 0.00 0.00 3.18
2178 6071 4.389576 GTGGAAGCAGCGCCGTTG 62.390 66.667 2.29 0.00 0.00 4.10
2184 6077 4.093952 CTTGCGGTGGAAGCAGCG 62.094 66.667 0.00 0.00 46.01 5.18
2185 6078 4.410743 GCTTGCGGTGGAAGCAGC 62.411 66.667 16.62 3.66 46.01 5.25
2186 6079 4.093952 CGCTTGCGGTGGAAGCAG 62.094 66.667 20.34 10.86 45.15 4.24
2187 6080 4.617520 TCGCTTGCGGTGGAAGCA 62.618 61.111 20.34 7.29 45.15 3.91
2188 6081 3.793144 CTCGCTTGCGGTGGAAGC 61.793 66.667 15.10 12.31 42.08 3.86
2189 6082 3.121030 CCTCGCTTGCGGTGGAAG 61.121 66.667 15.10 4.58 0.00 3.46
2190 6083 3.936203 ACCTCGCTTGCGGTGGAA 61.936 61.111 24.88 4.55 30.90 3.53
2191 6084 4.680237 CACCTCGCTTGCGGTGGA 62.680 66.667 24.88 4.86 45.39 4.02
2194 6087 3.454587 TTGACACCTCGCTTGCGGT 62.455 57.895 15.10 4.82 0.00 5.68
2195 6088 2.664851 TTGACACCTCGCTTGCGG 60.665 61.111 15.10 5.92 0.00 5.69
2196 6089 2.551270 GTTGACACCTCGCTTGCG 59.449 61.111 8.87 8.87 0.00 4.85
2197 6090 1.495584 TTCGTTGACACCTCGCTTGC 61.496 55.000 0.00 0.00 0.00 4.01
2198 6091 0.934496 TTTCGTTGACACCTCGCTTG 59.066 50.000 0.00 0.00 0.00 4.01
2199 6092 1.531149 CATTTCGTTGACACCTCGCTT 59.469 47.619 0.00 0.00 0.00 4.68
2200 6093 1.148310 CATTTCGTTGACACCTCGCT 58.852 50.000 0.00 0.00 0.00 4.93
2201 6094 0.165944 CCATTTCGTTGACACCTCGC 59.834 55.000 0.00 0.00 0.00 5.03
2202 6095 0.165944 GCCATTTCGTTGACACCTCG 59.834 55.000 0.00 0.00 0.00 4.63
2203 6096 0.521735 GGCCATTTCGTTGACACCTC 59.478 55.000 0.00 0.00 0.00 3.85
2204 6097 1.234615 CGGCCATTTCGTTGACACCT 61.235 55.000 2.24 0.00 0.00 4.00
2205 6098 1.209127 CGGCCATTTCGTTGACACC 59.791 57.895 2.24 0.00 0.00 4.16
2206 6099 1.209127 CCGGCCATTTCGTTGACAC 59.791 57.895 2.24 0.00 0.00 3.67
2207 6100 0.535328 TTCCGGCCATTTCGTTGACA 60.535 50.000 2.24 0.00 0.00 3.58
2208 6101 0.168128 CTTCCGGCCATTTCGTTGAC 59.832 55.000 2.24 0.00 0.00 3.18
2209 6102 0.958382 CCTTCCGGCCATTTCGTTGA 60.958 55.000 2.24 0.00 0.00 3.18
2210 6103 1.241315 ACCTTCCGGCCATTTCGTTG 61.241 55.000 2.24 0.00 0.00 4.10
2211 6104 0.325602 TACCTTCCGGCCATTTCGTT 59.674 50.000 2.24 0.00 0.00 3.85
2212 6105 0.544697 ATACCTTCCGGCCATTTCGT 59.455 50.000 2.24 0.00 0.00 3.85
2213 6106 0.944386 CATACCTTCCGGCCATTTCG 59.056 55.000 2.24 0.00 0.00 3.46
2214 6107 0.668535 GCATACCTTCCGGCCATTTC 59.331 55.000 2.24 0.00 0.00 2.17
2215 6108 0.258774 AGCATACCTTCCGGCCATTT 59.741 50.000 2.24 0.00 0.00 2.32
2216 6109 0.258774 AAGCATACCTTCCGGCCATT 59.741 50.000 2.24 0.00 0.00 3.16
2217 6110 0.179018 GAAGCATACCTTCCGGCCAT 60.179 55.000 2.24 0.00 43.39 4.40
2218 6111 1.223487 GAAGCATACCTTCCGGCCA 59.777 57.895 2.24 0.00 43.39 5.36
2219 6112 4.142780 GAAGCATACCTTCCGGCC 57.857 61.111 0.00 0.00 43.39 6.13
2225 6118 7.923414 ATAAGAAAACGAAGAAGCATACCTT 57.077 32.000 0.00 0.00 36.19 3.50
2226 6119 8.258708 AGTATAAGAAAACGAAGAAGCATACCT 58.741 33.333 0.00 0.00 0.00 3.08
2227 6120 8.421673 AGTATAAGAAAACGAAGAAGCATACC 57.578 34.615 0.00 0.00 0.00 2.73
2228 6121 9.690434 CAAGTATAAGAAAACGAAGAAGCATAC 57.310 33.333 0.00 0.00 0.00 2.39
2229 6122 8.388103 GCAAGTATAAGAAAACGAAGAAGCATA 58.612 33.333 0.00 0.00 0.00 3.14
2230 6123 7.119846 AGCAAGTATAAGAAAACGAAGAAGCAT 59.880 33.333 0.00 0.00 0.00 3.79
2231 6124 6.426937 AGCAAGTATAAGAAAACGAAGAAGCA 59.573 34.615 0.00 0.00 0.00 3.91
2232 6125 6.832804 AGCAAGTATAAGAAAACGAAGAAGC 58.167 36.000 0.00 0.00 0.00 3.86
2233 6126 7.684489 CGAAGCAAGTATAAGAAAACGAAGAAG 59.316 37.037 0.00 0.00 0.00 2.85
2234 6127 7.507304 CGAAGCAAGTATAAGAAAACGAAGAA 58.493 34.615 0.00 0.00 0.00 2.52
2235 6128 7.045725 CGAAGCAAGTATAAGAAAACGAAGA 57.954 36.000 0.00 0.00 0.00 2.87
2266 6159 0.815213 TCATGAGCTACCGCAATGGC 60.815 55.000 0.00 0.00 43.94 4.40
2267 6160 0.940126 GTCATGAGCTACCGCAATGG 59.060 55.000 0.00 0.00 46.41 3.16
2268 6161 1.945387 AGTCATGAGCTACCGCAATG 58.055 50.000 0.00 0.00 39.10 2.82
2269 6162 2.093500 TCAAGTCATGAGCTACCGCAAT 60.093 45.455 0.00 0.00 39.10 3.56
2270 6163 1.275010 TCAAGTCATGAGCTACCGCAA 59.725 47.619 0.00 0.00 39.10 4.85
2271 6164 0.894835 TCAAGTCATGAGCTACCGCA 59.105 50.000 0.00 0.00 39.10 5.69
2272 6165 1.863454 CATCAAGTCATGAGCTACCGC 59.137 52.381 0.00 0.00 42.53 5.68
2273 6166 3.119291 GTCATCAAGTCATGAGCTACCG 58.881 50.000 0.00 0.00 42.53 4.02
2274 6167 3.868077 GTGTCATCAAGTCATGAGCTACC 59.132 47.826 0.00 0.00 42.53 3.18
2275 6168 4.753233 AGTGTCATCAAGTCATGAGCTAC 58.247 43.478 0.00 0.00 42.53 3.58
2276 6169 4.463891 TGAGTGTCATCAAGTCATGAGCTA 59.536 41.667 0.00 0.00 42.53 3.32
2277 6170 3.260128 TGAGTGTCATCAAGTCATGAGCT 59.740 43.478 0.00 0.00 42.53 4.09
2278 6171 3.370366 GTGAGTGTCATCAAGTCATGAGC 59.630 47.826 0.00 0.00 42.53 4.26
2279 6172 4.626172 CAGTGAGTGTCATCAAGTCATGAG 59.374 45.833 0.00 0.00 42.53 2.90
2280 6173 4.039609 ACAGTGAGTGTCATCAAGTCATGA 59.960 41.667 0.00 0.00 37.33 3.07
2281 6174 4.313282 ACAGTGAGTGTCATCAAGTCATG 58.687 43.478 0.00 0.00 31.90 3.07
2282 6175 4.613925 ACAGTGAGTGTCATCAAGTCAT 57.386 40.909 0.00 0.00 31.90 3.06
2283 6176 4.559502 GCTACAGTGAGTGTCATCAAGTCA 60.560 45.833 0.00 0.00 40.94 3.41
2284 6177 3.923461 GCTACAGTGAGTGTCATCAAGTC 59.077 47.826 0.00 0.00 40.94 3.01
2285 6178 3.612717 CGCTACAGTGAGTGTCATCAAGT 60.613 47.826 0.00 0.00 40.94 3.16
2286 6179 2.919859 CGCTACAGTGAGTGTCATCAAG 59.080 50.000 0.00 0.00 40.94 3.02
2287 6180 2.926586 GCGCTACAGTGAGTGTCATCAA 60.927 50.000 0.00 0.00 40.94 2.57
2288 6181 1.402852 GCGCTACAGTGAGTGTCATCA 60.403 52.381 0.00 0.00 40.94 3.07
2289 6182 1.272781 GCGCTACAGTGAGTGTCATC 58.727 55.000 0.00 0.00 40.94 2.92
2290 6183 0.603065 TGCGCTACAGTGAGTGTCAT 59.397 50.000 9.73 0.00 40.94 3.06
2291 6184 0.603065 ATGCGCTACAGTGAGTGTCA 59.397 50.000 9.73 0.00 40.94 3.58
2292 6185 0.994995 CATGCGCTACAGTGAGTGTC 59.005 55.000 9.73 0.00 40.94 3.67
2293 6186 0.318441 ACATGCGCTACAGTGAGTGT 59.682 50.000 9.73 0.00 43.86 3.55
2294 6187 1.391485 GAACATGCGCTACAGTGAGTG 59.609 52.381 9.73 0.00 0.00 3.51
2295 6188 1.714794 GAACATGCGCTACAGTGAGT 58.285 50.000 9.73 0.00 0.00 3.41
2296 6189 0.642291 CGAACATGCGCTACAGTGAG 59.358 55.000 9.73 0.00 0.00 3.51
2297 6190 0.242555 TCGAACATGCGCTACAGTGA 59.757 50.000 9.73 0.00 0.00 3.41
2298 6191 1.067693 TTCGAACATGCGCTACAGTG 58.932 50.000 9.73 2.33 0.00 3.66
2299 6192 1.068474 GTTCGAACATGCGCTACAGT 58.932 50.000 23.12 0.00 0.00 3.55
2300 6193 0.023732 CGTTCGAACATGCGCTACAG 59.976 55.000 26.71 3.78 0.00 2.74
2301 6194 0.387494 TCGTTCGAACATGCGCTACA 60.387 50.000 26.71 0.00 0.00 2.74
2302 6195 0.921347 ATCGTTCGAACATGCGCTAC 59.079 50.000 26.71 0.00 0.00 3.58
2303 6196 0.920664 CATCGTTCGAACATGCGCTA 59.079 50.000 26.71 4.42 0.00 4.26
2304 6197 1.709760 CATCGTTCGAACATGCGCT 59.290 52.632 26.71 2.81 0.00 5.92
2305 6198 1.929714 GCATCGTTCGAACATGCGC 60.930 57.895 31.03 22.70 35.45 6.09
2306 6199 1.296867 GGCATCGTTCGAACATGCG 60.297 57.895 33.72 21.92 40.77 4.73
2307 6200 0.521242 GTGGCATCGTTCGAACATGC 60.521 55.000 33.69 33.69 39.97 4.06
2308 6201 1.078709 AGTGGCATCGTTCGAACATG 58.921 50.000 26.71 25.27 0.00 3.21
2309 6202 1.078709 CAGTGGCATCGTTCGAACAT 58.921 50.000 26.71 16.22 0.00 2.71
2310 6203 1.565156 GCAGTGGCATCGTTCGAACA 61.565 55.000 26.71 14.74 40.72 3.18
2311 6204 1.132640 GCAGTGGCATCGTTCGAAC 59.867 57.895 18.47 18.47 40.72 3.95
2312 6205 1.005037 AGCAGTGGCATCGTTCGAA 60.005 52.632 0.00 0.00 44.61 3.71
2313 6206 1.737735 CAGCAGTGGCATCGTTCGA 60.738 57.895 0.00 0.00 44.61 3.71
2314 6207 1.690283 CTCAGCAGTGGCATCGTTCG 61.690 60.000 0.00 0.00 44.61 3.95
2315 6208 0.671781 ACTCAGCAGTGGCATCGTTC 60.672 55.000 0.00 0.00 44.61 3.95
2316 6209 0.250467 AACTCAGCAGTGGCATCGTT 60.250 50.000 0.00 0.00 44.61 3.85
2317 6210 0.671781 GAACTCAGCAGTGGCATCGT 60.672 55.000 0.00 0.00 44.61 3.73
2318 6211 1.690283 CGAACTCAGCAGTGGCATCG 61.690 60.000 0.00 0.00 44.61 3.84
2319 6212 0.671781 ACGAACTCAGCAGTGGCATC 60.672 55.000 0.00 0.00 44.61 3.91
2320 6213 0.671781 GACGAACTCAGCAGTGGCAT 60.672 55.000 0.00 0.00 44.61 4.40
2321 6214 1.300931 GACGAACTCAGCAGTGGCA 60.301 57.895 0.00 0.00 44.61 4.92
2322 6215 0.880278 TTGACGAACTCAGCAGTGGC 60.880 55.000 0.00 0.00 41.61 5.01
2323 6216 0.861837 GTTGACGAACTCAGCAGTGG 59.138 55.000 0.00 0.00 31.06 4.00
2324 6217 1.858091 AGTTGACGAACTCAGCAGTG 58.142 50.000 0.00 0.00 38.01 3.66
2325 6218 2.205074 CAAGTTGACGAACTCAGCAGT 58.795 47.619 0.00 0.00 41.87 4.40
2326 6219 2.205074 ACAAGTTGACGAACTCAGCAG 58.795 47.619 10.54 0.00 41.87 4.24
2327 6220 2.309528 ACAAGTTGACGAACTCAGCA 57.690 45.000 10.54 0.00 41.87 4.41
2328 6221 2.286418 CCAACAAGTTGACGAACTCAGC 60.286 50.000 10.54 0.00 41.87 4.26
2329 6222 3.001330 GTCCAACAAGTTGACGAACTCAG 59.999 47.826 10.54 0.00 41.87 3.35
2330 6223 2.933906 GTCCAACAAGTTGACGAACTCA 59.066 45.455 10.54 0.00 41.87 3.41
2331 6224 2.933906 TGTCCAACAAGTTGACGAACTC 59.066 45.455 10.54 0.00 41.87 3.01
2332 6225 2.676342 GTGTCCAACAAGTTGACGAACT 59.324 45.455 10.54 0.00 44.79 3.01
2333 6226 2.223180 GGTGTCCAACAAGTTGACGAAC 60.223 50.000 10.54 7.41 42.93 3.95
2334 6227 2.011222 GGTGTCCAACAAGTTGACGAA 58.989 47.619 10.54 0.00 42.93 3.85
2335 6228 1.066071 TGGTGTCCAACAAGTTGACGA 60.066 47.619 10.54 1.59 42.93 4.20
2336 6229 1.374560 TGGTGTCCAACAAGTTGACG 58.625 50.000 10.54 0.00 42.93 4.35
2346 6239 1.121378 TCTACGGTGTTGGTGTCCAA 58.879 50.000 0.00 0.00 41.69 3.53
2347 6240 0.390124 GTCTACGGTGTTGGTGTCCA 59.610 55.000 0.00 0.00 0.00 4.02
2348 6241 0.390124 TGTCTACGGTGTTGGTGTCC 59.610 55.000 0.00 0.00 0.00 4.02
2349 6242 2.334838 GATGTCTACGGTGTTGGTGTC 58.665 52.381 0.00 0.00 0.00 3.67
2350 6243 1.336517 CGATGTCTACGGTGTTGGTGT 60.337 52.381 0.00 0.00 0.00 4.16
2351 6244 1.068125 TCGATGTCTACGGTGTTGGTG 60.068 52.381 0.00 0.00 0.00 4.17
2352 6245 1.250328 TCGATGTCTACGGTGTTGGT 58.750 50.000 0.00 0.00 0.00 3.67
2353 6246 2.159296 TGATCGATGTCTACGGTGTTGG 60.159 50.000 0.54 0.00 0.00 3.77
2354 6247 3.145212 TGATCGATGTCTACGGTGTTG 57.855 47.619 0.54 0.00 0.00 3.33
2355 6248 3.861276 TTGATCGATGTCTACGGTGTT 57.139 42.857 0.54 0.00 0.00 3.32
2356 6249 3.508762 GTTTGATCGATGTCTACGGTGT 58.491 45.455 0.54 0.00 0.00 4.16
2357 6250 2.858344 GGTTTGATCGATGTCTACGGTG 59.142 50.000 0.54 0.00 0.00 4.94
2358 6251 2.159142 GGGTTTGATCGATGTCTACGGT 60.159 50.000 0.54 0.00 0.00 4.83
2359 6252 2.470821 GGGTTTGATCGATGTCTACGG 58.529 52.381 0.54 0.00 0.00 4.02
2360 6253 2.470821 GGGGTTTGATCGATGTCTACG 58.529 52.381 0.54 0.00 0.00 3.51
2361 6254 2.100252 TCGGGGTTTGATCGATGTCTAC 59.900 50.000 0.54 0.00 0.00 2.59
2362 6255 2.380941 TCGGGGTTTGATCGATGTCTA 58.619 47.619 0.54 0.00 0.00 2.59
2363 6256 1.191535 TCGGGGTTTGATCGATGTCT 58.808 50.000 0.54 0.00 0.00 3.41
2364 6257 2.135933 GATCGGGGTTTGATCGATGTC 58.864 52.381 0.54 0.00 42.65 3.06
2365 6258 2.240493 GATCGGGGTTTGATCGATGT 57.760 50.000 0.54 0.00 42.65 3.06
2370 6263 0.179084 TCAGCGATCGGGGTTTGATC 60.179 55.000 18.30 0.00 39.07 2.92
2371 6264 0.469917 ATCAGCGATCGGGGTTTGAT 59.530 50.000 18.30 0.67 0.00 2.57
2372 6265 0.251916 AATCAGCGATCGGGGTTTGA 59.748 50.000 18.30 0.00 0.00 2.69
2373 6266 1.064060 GAAATCAGCGATCGGGGTTTG 59.936 52.381 18.30 0.00 0.00 2.93
2374 6267 1.379527 GAAATCAGCGATCGGGGTTT 58.620 50.000 18.30 6.35 0.00 3.27
2375 6268 0.810031 CGAAATCAGCGATCGGGGTT 60.810 55.000 18.30 0.00 33.15 4.11
2376 6269 1.227263 CGAAATCAGCGATCGGGGT 60.227 57.895 18.30 0.00 33.15 4.95
2377 6270 1.067416 TCGAAATCAGCGATCGGGG 59.933 57.895 18.30 0.00 37.20 5.73
2378 6271 4.730081 TCGAAATCAGCGATCGGG 57.270 55.556 18.30 0.00 37.20 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.