Multiple sequence alignment - TraesCS3D01G121000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G121000 chr3D 100.000 5189 0 0 956 6144 76938868 76933680 0.000000e+00 9583.0
1 TraesCS3D01G121000 chr3D 100.000 714 0 0 1 714 76939823 76939110 0.000000e+00 1319.0
2 TraesCS3D01G121000 chr3D 93.478 92 6 0 4205 4296 57504476 57504567 2.990000e-28 137.0
3 TraesCS3D01G121000 chr3D 90.196 102 10 0 111 212 47776323 47776222 3.860000e-27 134.0
4 TraesCS3D01G121000 chr3D 87.302 63 6 1 4725 4785 612296027 612295965 3.070000e-08 71.3
5 TraesCS3D01G121000 chr3A 95.038 2116 66 13 2530 4639 91028700 91026618 0.000000e+00 3290.0
6 TraesCS3D01G121000 chr3A 92.960 1463 43 21 4723 6144 91026620 91025177 0.000000e+00 2076.0
7 TraesCS3D01G121000 chr3A 90.871 1424 81 29 991 2398 91030170 91028780 0.000000e+00 1864.0
8 TraesCS3D01G121000 chr3A 91.205 307 12 3 407 713 91031101 91030810 2.670000e-108 403.0
9 TraesCS3D01G121000 chr3A 90.909 220 19 1 1 220 91031662 91031444 1.670000e-75 294.0
10 TraesCS3D01G121000 chr3A 87.786 131 12 4 4723 4849 137577210 137577080 3.840000e-32 150.0
11 TraesCS3D01G121000 chr3A 91.667 96 8 0 4209 4304 569232141 569232236 3.860000e-27 134.0
12 TraesCS3D01G121000 chr3A 89.320 103 11 0 4205 4307 10305761 10305863 5.000000e-26 130.0
13 TraesCS3D01G121000 chr3A 79.221 154 21 7 4505 4649 718060375 718060526 5.070000e-16 97.1
14 TraesCS3D01G121000 chr3B 92.398 2118 91 25 2530 4639 123477044 123474989 0.000000e+00 2955.0
15 TraesCS3D01G121000 chr3B 91.994 1449 89 21 956 2398 123478551 123477124 0.000000e+00 2008.0
16 TraesCS3D01G121000 chr3B 89.047 1333 50 34 4830 6111 123474952 123473665 0.000000e+00 1565.0
17 TraesCS3D01G121000 chr3B 93.375 317 14 3 401 713 123478978 123478665 4.340000e-126 462.0
18 TraesCS3D01G121000 chr3B 88.398 362 31 7 1 356 123570018 123569662 5.690000e-115 425.0
19 TraesCS3D01G121000 chr3B 94.495 109 6 0 2426 2534 4149876 4149984 1.060000e-37 169.0
20 TraesCS3D01G121000 chr3B 94.495 109 6 0 2426 2534 4967902 4968010 1.060000e-37 169.0
21 TraesCS3D01G121000 chr3B 85.156 128 16 3 4515 4639 74334349 74334476 1.800000e-25 128.0
22 TraesCS3D01G121000 chr3B 82.979 94 10 5 4630 4722 252927633 252927721 5.110000e-11 80.5
23 TraesCS3D01G121000 chr3B 82.000 100 12 5 4630 4728 444685680 444685586 5.110000e-11 80.5
24 TraesCS3D01G121000 chr3B 100.000 33 0 0 2395 2427 123477073 123477041 1.850000e-05 62.1
25 TraesCS3D01G121000 chr7D 82.919 603 69 9 2577 3174 369910841 369911414 4.250000e-141 512.0
26 TraesCS3D01G121000 chr7D 83.794 506 51 13 2650 3154 65531121 65531596 9.390000e-123 451.0
27 TraesCS3D01G121000 chr7D 92.562 121 9 0 2422 2542 161297221 161297101 2.280000e-39 174.0
28 TraesCS3D01G121000 chr7D 93.805 113 6 1 2422 2533 83801908 83802020 1.060000e-37 169.0
29 TraesCS3D01G121000 chr1D 84.690 516 50 12 2642 3154 378101946 378102435 7.160000e-134 488.0
30 TraesCS3D01G121000 chr1D 94.444 108 6 0 2426 2533 475814991 475815098 3.810000e-37 167.0
31 TraesCS3D01G121000 chr1D 89.524 105 11 0 108 212 300057995 300058099 3.860000e-27 134.0
32 TraesCS3D01G121000 chr7A 85.507 345 41 7 2577 2916 410410556 410410896 9.800000e-93 351.0
33 TraesCS3D01G121000 chr7A 90.291 103 10 0 4205 4307 180659512 180659614 1.070000e-27 135.0
34 TraesCS3D01G121000 chr7A 84.252 127 17 2 4723 4846 561386376 561386250 3.010000e-23 121.0
35 TraesCS3D01G121000 chr1A 95.536 112 5 0 2425 2536 19894865 19894976 4.890000e-41 180.0
36 TraesCS3D01G121000 chr1A 87.629 97 9 1 3826 3922 549045583 549045490 6.510000e-20 110.0
37 TraesCS3D01G121000 chr2D 95.370 108 5 0 2426 2533 194731001 194731108 8.190000e-39 172.0
38 TraesCS3D01G121000 chr2D 89.423 104 11 0 4204 4307 388818864 388818761 1.390000e-26 132.0
39 TraesCS3D01G121000 chr2D 86.517 89 9 2 4638 4726 591982750 591982665 1.820000e-15 95.3
40 TraesCS3D01G121000 chr2D 86.517 89 9 2 4638 4726 591997454 591997369 1.820000e-15 95.3
41 TraesCS3D01G121000 chrUn 91.667 120 7 2 2414 2533 74611450 74611566 4.930000e-36 163.0
42 TraesCS3D01G121000 chrUn 86.517 89 9 2 4638 4726 418303944 418304029 1.820000e-15 95.3
43 TraesCS3D01G121000 chr6A 92.920 113 7 1 2425 2536 205107072 205107184 4.930000e-36 163.0
44 TraesCS3D01G121000 chr6A 86.667 105 14 0 108 212 58322936 58322832 3.890000e-22 117.0
45 TraesCS3D01G121000 chr6A 86.667 105 14 0 108 212 478851357 478851461 3.890000e-22 117.0
46 TraesCS3D01G121000 chr1B 88.489 139 11 5 4505 4639 349756621 349756484 4.930000e-36 163.0
47 TraesCS3D01G121000 chr1B 79.747 79 14 2 4725 4801 638884422 638884344 8.600000e-04 56.5
48 TraesCS3D01G121000 chr7B 87.770 139 13 4 4505 4639 2475571 2475709 6.370000e-35 159.0
49 TraesCS3D01G121000 chr7B 89.623 106 9 1 4204 4307 83912862 83912757 3.860000e-27 134.0
50 TraesCS3D01G121000 chr7B 90.625 96 6 2 4631 4726 334772959 334772867 2.330000e-24 124.0
51 TraesCS3D01G121000 chr7B 92.857 42 3 0 4687 4728 678540767 678540726 1.850000e-05 62.1
52 TraesCS3D01G121000 chr5D 90.385 104 10 0 4204 4307 282007011 282007114 2.990000e-28 137.0
53 TraesCS3D01G121000 chr5D 89.524 105 11 0 108 212 505989401 505989505 3.860000e-27 134.0
54 TraesCS3D01G121000 chr5A 84.286 140 18 4 4504 4639 573080505 573080366 3.860000e-27 134.0
55 TraesCS3D01G121000 chr5A 86.792 106 13 1 108 212 374578121 374578226 3.890000e-22 117.0
56 TraesCS3D01G121000 chr5A 81.119 143 22 3 4707 4846 41376109 41376249 6.510000e-20 110.0
57 TraesCS3D01G121000 chr5A 89.130 92 5 4 4638 4728 44998154 44998067 6.510000e-20 110.0
58 TraesCS3D01G121000 chr5A 100.000 28 0 0 3790 3817 111595004 111594977 1.100000e-02 52.8
59 TraesCS3D01G121000 chr2A 87.619 105 13 0 108 212 300328604 300328708 8.360000e-24 122.0
60 TraesCS3D01G121000 chr2A 79.592 147 22 6 4702 4846 699805523 699805663 1.410000e-16 99.0
61 TraesCS3D01G121000 chr6D 86.486 111 12 3 4505 4613 53884257 53884366 1.080000e-22 119.0
62 TraesCS3D01G121000 chr4A 82.482 137 21 3 4506 4639 437488131 437487995 3.890000e-22 117.0
63 TraesCS3D01G121000 chr4A 83.721 86 9 4 4637 4722 715190210 715190290 6.600000e-10 76.8
64 TraesCS3D01G121000 chr4A 85.000 60 6 3 4741 4798 733451018 733451076 2.390000e-04 58.4
65 TraesCS3D01G121000 chr6B 82.707 133 19 4 4723 4851 234148167 234148035 1.400000e-21 115.0
66 TraesCS3D01G121000 chr2B 82.540 126 20 2 4723 4846 614246210 614246335 6.510000e-20 110.0
67 TraesCS3D01G121000 chr2B 100.000 28 0 0 3790 3817 725623408 725623381 1.100000e-02 52.8
68 TraesCS3D01G121000 chr4D 95.833 48 1 1 4631 4678 282196995 282196949 6.600000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G121000 chr3D 76933680 76939823 6143 True 5451.00 9583 100.0000 1 6144 2 chr3D.!!$R3 6143
1 TraesCS3D01G121000 chr3A 91025177 91031662 6485 True 1585.40 3290 92.1966 1 6144 5 chr3A.!!$R2 6143
2 TraesCS3D01G121000 chr3B 123473665 123478978 5313 True 1410.42 2955 93.3628 401 6111 5 chr3B.!!$R3 5710
3 TraesCS3D01G121000 chr7D 369910841 369911414 573 False 512.00 512 82.9190 2577 3174 1 chr7D.!!$F3 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
503 737 0.040157 CACAACCGTGGATGCTGTTG 60.040 55.0 11.26 11.26 42.8 3.33 F
623 869 0.095589 CCTTCGTCTCGTCTCTCGTG 59.904 60.0 0.00 0.00 40.8 4.35 F
1331 1953 0.459585 GCCACCGATTAGTTCAGCGA 60.460 55.0 0.00 0.00 0.0 4.93 F
2731 3422 0.171231 GCGGCAATCTTTCCAAGGAC 59.829 55.0 0.00 0.00 0.0 3.85 F
3252 3947 0.745845 GTCAGAGATTGCACCGCCAT 60.746 55.0 0.00 0.00 0.0 4.40 F
4090 4809 0.534412 AGCTCCAAGATGTCGGACTG 59.466 55.0 9.88 0.00 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1391 2013 0.234106 CTAATCAAGCATGAGCCGCG 59.766 55.000 0.00 0.00 43.56 6.46 R
2211 2848 1.086634 CGAGGAAGCAGCTAAGCCAC 61.087 60.000 0.00 0.00 34.23 5.01 R
3053 3748 2.121506 TCTGGGAACAAGGGGCCT 60.122 61.111 0.84 0.00 42.06 5.19 R
3922 4638 0.105964 TGGTTGCCAGCTGGGTAAAA 60.106 50.000 33.46 9.56 43.32 1.52 R
4321 5044 1.327303 AGATCAGGAGAAGCGCCTAG 58.673 55.000 2.29 0.00 31.11 3.02 R
5655 6418 0.108945 GCTGCTGTTGGGAATTCTGC 60.109 55.000 5.23 2.03 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.141914 ACGGAGGAAGTAGCATTTTAGGAG 60.142 45.833 0.00 0.00 0.00 3.69
36 37 5.590259 GGAAGTAGCATTTTAGGAGCATTGA 59.410 40.000 0.00 0.00 0.00 2.57
38 39 6.874288 AGTAGCATTTTAGGAGCATTGATC 57.126 37.500 0.00 0.00 0.00 2.92
50 51 4.394920 GGAGCATTGATCTTTTTACCACGA 59.605 41.667 1.44 0.00 0.00 4.35
100 101 7.698836 AATTTCTACAAGCACACAAAACATC 57.301 32.000 0.00 0.00 0.00 3.06
104 105 7.744087 TCTACAAGCACACAAAACATCTATT 57.256 32.000 0.00 0.00 0.00 1.73
113 114 7.795734 GCACACAAAACATCTATTAGATCATCG 59.204 37.037 3.10 0.00 31.32 3.84
123 124 9.376075 CATCTATTAGATCATCGCCTATGTTTT 57.624 33.333 3.10 0.00 36.89 2.43
159 160 5.945784 AGGCTTAAATCATCACTTGCTTACA 59.054 36.000 0.00 0.00 0.00 2.41
160 161 6.434028 AGGCTTAAATCATCACTTGCTTACAA 59.566 34.615 0.00 0.00 0.00 2.41
174 175 3.769300 TGCTTACAAGGATAGCAGAGTGA 59.231 43.478 0.00 0.00 39.79 3.41
181 182 3.230134 AGGATAGCAGAGTGAGGTGATC 58.770 50.000 0.00 0.00 0.00 2.92
184 185 4.100808 GGATAGCAGAGTGAGGTGATCTTT 59.899 45.833 0.00 0.00 0.00 2.52
198 199 4.321675 GGTGATCTTTTAACCCGTTGCAAT 60.322 41.667 0.59 0.00 0.00 3.56
207 208 1.547292 CCCGTTGCAATGCACAAACG 61.547 55.000 20.10 20.10 38.71 3.60
208 209 0.869454 CCGTTGCAATGCACAAACGT 60.869 50.000 23.49 0.00 38.22 3.99
209 210 1.598183 CCGTTGCAATGCACAAACGTA 60.598 47.619 23.49 0.13 38.22 3.57
210 211 2.315011 CGTTGCAATGCACAAACGTAT 58.685 42.857 19.14 0.00 38.71 3.06
211 212 2.723658 CGTTGCAATGCACAAACGTATT 59.276 40.909 19.14 0.00 38.71 1.89
212 213 3.908978 CGTTGCAATGCACAAACGTATTA 59.091 39.130 19.14 0.00 38.71 0.98
213 214 4.201353 CGTTGCAATGCACAAACGTATTAC 60.201 41.667 19.14 6.12 38.71 1.89
214 215 3.827625 TGCAATGCACAAACGTATTACC 58.172 40.909 2.72 0.00 31.71 2.85
215 216 3.504134 TGCAATGCACAAACGTATTACCT 59.496 39.130 2.72 0.00 31.71 3.08
216 217 4.095610 GCAATGCACAAACGTATTACCTC 58.904 43.478 0.00 0.00 0.00 3.85
217 218 4.658071 CAATGCACAAACGTATTACCTCC 58.342 43.478 0.00 0.00 0.00 4.30
218 219 2.339418 TGCACAAACGTATTACCTCCG 58.661 47.619 0.00 0.00 0.00 4.63
219 220 2.288948 TGCACAAACGTATTACCTCCGT 60.289 45.455 0.00 0.00 36.17 4.69
220 221 2.346545 GCACAAACGTATTACCTCCGTC 59.653 50.000 0.00 0.00 32.95 4.79
221 222 2.925563 CACAAACGTATTACCTCCGTCC 59.074 50.000 0.00 0.00 32.95 4.79
222 223 2.827921 ACAAACGTATTACCTCCGTCCT 59.172 45.455 0.00 0.00 32.95 3.85
223 224 4.016444 ACAAACGTATTACCTCCGTCCTA 58.984 43.478 0.00 0.00 32.95 2.94
224 225 4.462483 ACAAACGTATTACCTCCGTCCTAA 59.538 41.667 0.00 0.00 32.95 2.69
225 226 5.047377 ACAAACGTATTACCTCCGTCCTAAA 60.047 40.000 0.00 0.00 32.95 1.85
226 227 5.859205 AACGTATTACCTCCGTCCTAAAT 57.141 39.130 0.00 0.00 32.95 1.40
227 228 5.859205 ACGTATTACCTCCGTCCTAAATT 57.141 39.130 0.00 0.00 0.00 1.82
228 229 6.225981 ACGTATTACCTCCGTCCTAAATTT 57.774 37.500 0.00 0.00 0.00 1.82
229 230 7.346751 ACGTATTACCTCCGTCCTAAATTTA 57.653 36.000 0.00 0.00 0.00 1.40
230 231 7.955918 ACGTATTACCTCCGTCCTAAATTTAT 58.044 34.615 0.00 0.00 0.00 1.40
231 232 8.084684 ACGTATTACCTCCGTCCTAAATTTATC 58.915 37.037 0.00 0.00 0.00 1.75
232 233 8.084073 CGTATTACCTCCGTCCTAAATTTATCA 58.916 37.037 0.00 0.00 0.00 2.15
233 234 9.768662 GTATTACCTCCGTCCTAAATTTATCAA 57.231 33.333 0.00 0.00 0.00 2.57
235 236 9.689501 ATTACCTCCGTCCTAAATTTATCAAAA 57.310 29.630 0.00 0.00 0.00 2.44
236 237 9.517868 TTACCTCCGTCCTAAATTTATCAAAAA 57.482 29.630 0.00 0.00 0.00 1.94
237 238 7.823665 ACCTCCGTCCTAAATTTATCAAAAAC 58.176 34.615 0.00 0.00 0.00 2.43
238 239 6.964934 CCTCCGTCCTAAATTTATCAAAAACG 59.035 38.462 0.00 3.54 0.00 3.60
239 240 6.844254 TCCGTCCTAAATTTATCAAAAACGG 58.156 36.000 17.73 17.73 40.42 4.44
240 241 6.031471 CCGTCCTAAATTTATCAAAAACGGG 58.969 40.000 16.86 6.64 37.63 5.28
241 242 6.127952 CCGTCCTAAATTTATCAAAAACGGGA 60.128 38.462 16.86 8.27 37.63 5.14
242 243 6.744082 CGTCCTAAATTTATCAAAAACGGGAC 59.256 38.462 13.52 13.52 34.45 4.46
243 244 7.573469 CGTCCTAAATTTATCAAAAACGGGACA 60.573 37.037 19.34 0.00 35.80 4.02
244 245 8.248253 GTCCTAAATTTATCAAAAACGGGACAT 58.752 33.333 16.59 0.00 35.93 3.06
245 246 9.463902 TCCTAAATTTATCAAAAACGGGACATA 57.536 29.630 0.00 0.00 0.00 2.29
260 261 7.179076 ACGGGACATATGTAATATTACCTCC 57.821 40.000 20.35 15.09 37.44 4.30
263 264 7.578189 CGGGACATATGTAATATTACCTCCGTT 60.578 40.741 20.35 3.45 37.44 4.44
272 273 7.652909 TGTAATATTACCTCCGTTGTAATTCGG 59.347 37.037 20.35 0.00 39.14 4.30
273 274 2.965572 TACCTCCGTTGTAATTCGGG 57.034 50.000 3.73 0.00 45.79 5.14
274 275 1.269012 ACCTCCGTTGTAATTCGGGA 58.731 50.000 3.73 0.00 45.79 5.14
275 276 1.066645 ACCTCCGTTGTAATTCGGGAC 60.067 52.381 3.73 0.00 45.79 4.46
276 277 7.902860 ATTACCTCCGTTGTAATTCGGGACG 62.903 48.000 3.73 1.05 45.79 4.79
291 292 1.969208 GGGACGGAGGGAGTATTTAGG 59.031 57.143 0.00 0.00 0.00 2.69
292 293 2.675583 GGACGGAGGGAGTATTTAGGT 58.324 52.381 0.00 0.00 0.00 3.08
293 294 3.036819 GGACGGAGGGAGTATTTAGGTT 58.963 50.000 0.00 0.00 0.00 3.50
294 295 3.181468 GGACGGAGGGAGTATTTAGGTTG 60.181 52.174 0.00 0.00 0.00 3.77
295 296 2.169978 ACGGAGGGAGTATTTAGGTTGC 59.830 50.000 0.00 0.00 0.00 4.17
296 297 2.169769 CGGAGGGAGTATTTAGGTTGCA 59.830 50.000 0.00 0.00 0.00 4.08
297 298 3.542648 GGAGGGAGTATTTAGGTTGCAC 58.457 50.000 0.00 0.00 0.00 4.57
298 299 3.542648 GAGGGAGTATTTAGGTTGCACC 58.457 50.000 0.00 0.00 38.99 5.01
299 300 2.093128 AGGGAGTATTTAGGTTGCACCG 60.093 50.000 0.00 0.00 44.90 4.94
300 301 2.355412 GGGAGTATTTAGGTTGCACCGT 60.355 50.000 0.00 0.00 44.90 4.83
301 302 3.340928 GGAGTATTTAGGTTGCACCGTT 58.659 45.455 0.00 0.00 44.90 4.44
302 303 4.506758 GGAGTATTTAGGTTGCACCGTTA 58.493 43.478 0.00 0.00 44.90 3.18
303 304 4.569564 GGAGTATTTAGGTTGCACCGTTAG 59.430 45.833 0.00 0.00 44.90 2.34
308 309 2.561478 AGGTTGCACCGTTAGAATGT 57.439 45.000 0.00 0.00 44.90 2.71
316 317 6.055231 TGCACCGTTAGAATGTTATTATGC 57.945 37.500 0.00 0.00 0.00 3.14
319 320 6.427150 CACCGTTAGAATGTTATTATGCCAC 58.573 40.000 0.00 0.00 0.00 5.01
320 321 5.235616 ACCGTTAGAATGTTATTATGCCACG 59.764 40.000 0.00 0.00 0.00 4.94
321 322 5.464057 CCGTTAGAATGTTATTATGCCACGA 59.536 40.000 0.00 0.00 0.00 4.35
348 349 5.216566 CGTCGTTTTGATGGACACAATAT 57.783 39.130 0.00 0.00 0.00 1.28
349 350 5.255596 CGTCGTTTTGATGGACACAATATC 58.744 41.667 0.00 0.00 0.00 1.63
359 360 4.361783 TGGACACAATATCTTCTCTCCCA 58.638 43.478 0.00 0.00 0.00 4.37
363 364 5.128919 ACACAATATCTTCTCTCCCATTGC 58.871 41.667 0.00 0.00 0.00 3.56
367 368 6.837568 ACAATATCTTCTCTCCCATTGCAAAT 59.162 34.615 1.71 0.00 0.00 2.32
372 373 1.402968 CTCTCCCATTGCAAATCACGG 59.597 52.381 1.71 0.00 0.00 4.94
379 380 3.128415 CCATTGCAAATCACGGACATACA 59.872 43.478 1.71 0.00 0.00 2.29
380 381 4.202040 CCATTGCAAATCACGGACATACAT 60.202 41.667 1.71 0.00 0.00 2.29
381 382 4.354071 TTGCAAATCACGGACATACATG 57.646 40.909 0.00 0.00 0.00 3.21
383 384 2.850631 GCAAATCACGGACATACATGCG 60.851 50.000 0.00 0.00 0.00 4.73
384 385 2.595124 AATCACGGACATACATGCGA 57.405 45.000 0.00 0.00 0.00 5.10
385 386 2.140065 ATCACGGACATACATGCGAG 57.860 50.000 0.00 0.00 0.00 5.03
386 387 0.815095 TCACGGACATACATGCGAGT 59.185 50.000 0.00 0.00 0.00 4.18
387 388 0.923403 CACGGACATACATGCGAGTG 59.077 55.000 0.00 0.00 0.00 3.51
389 390 0.923403 CGGACATACATGCGAGTGTG 59.077 55.000 0.00 4.02 36.77 3.82
393 626 3.428999 GGACATACATGCGAGTGTGTAGT 60.429 47.826 9.99 1.92 42.74 2.73
396 629 5.902681 ACATACATGCGAGTGTGTAGTAAT 58.097 37.500 8.59 0.00 41.23 1.89
399 632 7.977293 ACATACATGCGAGTGTGTAGTAATAAA 59.023 33.333 8.59 0.00 41.23 1.40
401 634 7.661127 ACATGCGAGTGTGTAGTAATAAAAA 57.339 32.000 0.00 0.00 0.00 1.94
501 735 4.063529 CACAACCGTGGATGCTGT 57.936 55.556 0.00 0.00 39.64 4.40
502 736 2.330254 CACAACCGTGGATGCTGTT 58.670 52.632 0.00 0.00 39.64 3.16
503 737 0.040157 CACAACCGTGGATGCTGTTG 60.040 55.000 11.26 11.26 42.80 3.33
504 738 1.081242 CAACCGTGGATGCTGTTGC 60.081 57.895 0.00 0.00 40.20 4.17
505 739 2.268076 AACCGTGGATGCTGTTGCC 61.268 57.895 0.00 0.00 38.71 4.52
506 740 3.803082 CCGTGGATGCTGTTGCCG 61.803 66.667 0.00 0.00 38.71 5.69
507 741 4.465512 CGTGGATGCTGTTGCCGC 62.466 66.667 0.00 0.00 38.71 6.53
508 742 3.058160 GTGGATGCTGTTGCCGCT 61.058 61.111 0.00 0.00 38.71 5.52
509 743 2.747460 TGGATGCTGTTGCCGCTC 60.747 61.111 0.00 0.00 38.71 5.03
510 744 3.512516 GGATGCTGTTGCCGCTCC 61.513 66.667 0.00 0.00 38.71 4.70
511 745 3.512516 GATGCTGTTGCCGCTCCC 61.513 66.667 0.00 0.00 38.71 4.30
623 869 0.095589 CCTTCGTCTCGTCTCTCGTG 59.904 60.000 0.00 0.00 40.80 4.35
646 896 4.294347 ACAAGAAGGGGAAAACCATCAAA 58.706 39.130 0.00 0.00 42.91 2.69
708 958 0.614697 CTTCCCACCAAATCCCCCAC 60.615 60.000 0.00 0.00 0.00 4.61
713 963 3.280151 CCAAATCCCCCACCCCCA 61.280 66.667 0.00 0.00 0.00 4.96
1253 1865 5.408356 CCGCCTCGCTAAATGTATAACTAT 58.592 41.667 0.00 0.00 0.00 2.12
1285 1907 7.252612 CCCCCTTTTTACATTTCCATTTACT 57.747 36.000 0.00 0.00 0.00 2.24
1286 1908 8.368962 CCCCCTTTTTACATTTCCATTTACTA 57.631 34.615 0.00 0.00 0.00 1.82
1287 1909 8.255206 CCCCCTTTTTACATTTCCATTTACTAC 58.745 37.037 0.00 0.00 0.00 2.73
1288 1910 8.255206 CCCCTTTTTACATTTCCATTTACTACC 58.745 37.037 0.00 0.00 0.00 3.18
1289 1911 8.808092 CCCTTTTTACATTTCCATTTACTACCA 58.192 33.333 0.00 0.00 0.00 3.25
1315 1937 1.723608 CCTTCGTGCTTGTGTTGCCA 61.724 55.000 0.00 0.00 0.00 4.92
1326 1948 2.147958 TGTGTTGCCACCGATTAGTTC 58.852 47.619 0.00 0.00 41.09 3.01
1330 1952 0.739462 TGCCACCGATTAGTTCAGCG 60.739 55.000 0.00 0.00 0.00 5.18
1331 1953 0.459585 GCCACCGATTAGTTCAGCGA 60.460 55.000 0.00 0.00 0.00 4.93
1332 1954 1.806623 GCCACCGATTAGTTCAGCGAT 60.807 52.381 0.00 0.00 0.00 4.58
1338 1960 5.041940 ACCGATTAGTTCAGCGATTAGTTC 58.958 41.667 0.00 0.00 0.00 3.01
1340 1962 5.282510 CGATTAGTTCAGCGATTAGTTCCT 58.717 41.667 0.00 0.00 0.00 3.36
1384 2006 1.153549 CTCGGAACACCCTAGCTGC 60.154 63.158 0.00 0.00 0.00 5.25
1428 2051 1.465794 AGTTCGTAGCCTGAGGAGAC 58.534 55.000 0.65 0.00 0.00 3.36
1516 2142 6.425114 GCTCGTATGACATTTGGATTAGATGT 59.575 38.462 0.00 0.00 36.76 3.06
1563 2190 6.456501 AGTGTTTGTGTACTTACTGGAGATC 58.543 40.000 0.00 0.00 0.00 2.75
1594 2222 5.703592 TCGTAGTTTGCTTTGTTGGTATCAT 59.296 36.000 0.00 0.00 0.00 2.45
1597 2225 5.772521 AGTTTGCTTTGTTGGTATCATGAC 58.227 37.500 0.00 0.00 0.00 3.06
1598 2226 5.301551 AGTTTGCTTTGTTGGTATCATGACA 59.698 36.000 0.00 0.00 0.00 3.58
1604 2232 4.019792 TGTTGGTATCATGACAGCTGTT 57.980 40.909 22.65 7.05 0.00 3.16
1605 2233 4.002982 TGTTGGTATCATGACAGCTGTTC 58.997 43.478 22.65 14.43 0.00 3.18
1792 2426 1.599667 GCATCAGCTATGTGCATGTGC 60.600 52.381 11.07 0.00 45.94 4.57
2082 2717 6.701145 ATGTAGATAGATGTATGCCTACCG 57.299 41.667 6.38 0.00 0.00 4.02
2086 2721 1.414158 AGATGTATGCCTACCGCTGT 58.586 50.000 0.00 0.00 38.78 4.40
2293 2930 7.243604 TGCTATCAGTTGAATGGGAAATTTT 57.756 32.000 0.00 0.00 0.00 1.82
2294 2931 7.098477 TGCTATCAGTTGAATGGGAAATTTTG 58.902 34.615 0.00 0.00 0.00 2.44
2320 2957 9.262358 GTAAATGACCTCTTGATACTATTGACC 57.738 37.037 0.00 0.00 0.00 4.02
2427 3118 6.645415 ACTTGCTCTGTGTGTATTTACAGTAC 59.355 38.462 0.00 0.00 43.59 2.73
2428 3119 6.340962 TGCTCTGTGTGTATTTACAGTACT 57.659 37.500 0.00 0.00 43.59 2.73
2429 3120 6.387465 TGCTCTGTGTGTATTTACAGTACTC 58.613 40.000 0.00 0.00 43.59 2.59
2430 3121 5.805994 GCTCTGTGTGTATTTACAGTACTCC 59.194 44.000 0.00 0.00 43.59 3.85
2431 3122 6.276832 TCTGTGTGTATTTACAGTACTCCC 57.723 41.667 0.00 0.00 43.59 4.30
2432 3123 6.014647 TCTGTGTGTATTTACAGTACTCCCT 58.985 40.000 0.00 0.00 43.59 4.20
2433 3124 6.152323 TCTGTGTGTATTTACAGTACTCCCTC 59.848 42.308 0.00 0.00 43.59 4.30
2434 3125 6.014647 TGTGTGTATTTACAGTACTCCCTCT 58.985 40.000 0.00 0.00 36.78 3.69
2435 3126 6.071560 TGTGTGTATTTACAGTACTCCCTCTG 60.072 42.308 0.00 0.00 36.78 3.35
2436 3127 6.014647 TGTGTATTTACAGTACTCCCTCTGT 58.985 40.000 0.00 0.00 45.21 3.41
2437 3128 6.495872 TGTGTATTTACAGTACTCCCTCTGTT 59.504 38.462 0.00 0.00 43.39 3.16
2438 3129 7.034397 GTGTATTTACAGTACTCCCTCTGTTC 58.966 42.308 0.00 0.00 43.39 3.18
2439 3130 6.722590 TGTATTTACAGTACTCCCTCTGTTCA 59.277 38.462 0.00 0.00 43.39 3.18
2440 3131 5.464030 TTTACAGTACTCCCTCTGTTCAC 57.536 43.478 0.00 0.00 43.39 3.18
2441 3132 3.246416 ACAGTACTCCCTCTGTTCACT 57.754 47.619 0.00 0.00 41.33 3.41
2442 3133 3.577919 ACAGTACTCCCTCTGTTCACTT 58.422 45.455 0.00 0.00 41.33 3.16
2443 3134 3.967987 ACAGTACTCCCTCTGTTCACTTT 59.032 43.478 0.00 0.00 41.33 2.66
2444 3135 4.409247 ACAGTACTCCCTCTGTTCACTTTT 59.591 41.667 0.00 0.00 41.33 2.27
2445 3136 4.752101 CAGTACTCCCTCTGTTCACTTTTG 59.248 45.833 0.00 0.00 0.00 2.44
2446 3137 3.214696 ACTCCCTCTGTTCACTTTTGG 57.785 47.619 0.00 0.00 0.00 3.28
2447 3138 2.777692 ACTCCCTCTGTTCACTTTTGGA 59.222 45.455 0.00 0.00 0.00 3.53
2448 3139 3.202151 ACTCCCTCTGTTCACTTTTGGAA 59.798 43.478 0.00 0.00 0.00 3.53
2449 3140 3.817647 CTCCCTCTGTTCACTTTTGGAAG 59.182 47.826 0.00 0.00 38.87 3.46
2450 3141 3.458118 TCCCTCTGTTCACTTTTGGAAGA 59.542 43.478 0.00 0.00 36.69 2.87
2451 3142 3.565902 CCCTCTGTTCACTTTTGGAAGAC 59.434 47.826 0.00 0.00 36.69 3.01
2452 3143 3.565902 CCTCTGTTCACTTTTGGAAGACC 59.434 47.826 0.00 0.00 36.69 3.85
2453 3144 3.202906 TCTGTTCACTTTTGGAAGACCG 58.797 45.455 0.00 0.00 39.42 4.79
2454 3145 2.943033 CTGTTCACTTTTGGAAGACCGT 59.057 45.455 0.00 0.00 39.42 4.83
2455 3146 3.349022 TGTTCACTTTTGGAAGACCGTT 58.651 40.909 0.00 0.00 39.42 4.44
2456 3147 3.759618 TGTTCACTTTTGGAAGACCGTTT 59.240 39.130 0.00 0.00 39.42 3.60
2457 3148 4.942483 TGTTCACTTTTGGAAGACCGTTTA 59.058 37.500 0.00 0.00 39.42 2.01
2458 3149 5.065474 TGTTCACTTTTGGAAGACCGTTTAG 59.935 40.000 0.00 0.00 39.42 1.85
2459 3150 5.026038 TCACTTTTGGAAGACCGTTTAGA 57.974 39.130 0.00 0.00 39.42 2.10
2460 3151 5.617252 TCACTTTTGGAAGACCGTTTAGAT 58.383 37.500 0.00 0.00 39.42 1.98
2461 3152 6.761312 TCACTTTTGGAAGACCGTTTAGATA 58.239 36.000 0.00 0.00 39.42 1.98
2462 3153 7.391620 TCACTTTTGGAAGACCGTTTAGATAT 58.608 34.615 0.00 0.00 39.42 1.63
2463 3154 7.881232 TCACTTTTGGAAGACCGTTTAGATATT 59.119 33.333 0.00 0.00 39.42 1.28
2464 3155 8.512138 CACTTTTGGAAGACCGTTTAGATATTT 58.488 33.333 0.00 0.00 39.42 1.40
2465 3156 9.729281 ACTTTTGGAAGACCGTTTAGATATTTA 57.271 29.630 0.00 0.00 39.42 1.40
2468 3159 9.947433 TTTGGAAGACCGTTTAGATATTTAAGA 57.053 29.630 0.00 0.00 39.42 2.10
2469 3160 8.937634 TGGAAGACCGTTTAGATATTTAAGAC 57.062 34.615 0.00 0.00 39.42 3.01
2470 3161 8.533657 TGGAAGACCGTTTAGATATTTAAGACA 58.466 33.333 0.00 0.00 39.42 3.41
2471 3162 9.374838 GGAAGACCGTTTAGATATTTAAGACAA 57.625 33.333 0.00 0.00 0.00 3.18
2473 3164 9.939802 AAGACCGTTTAGATATTTAAGACAACT 57.060 29.630 0.00 0.00 0.00 3.16
2474 3165 9.583765 AGACCGTTTAGATATTTAAGACAACTC 57.416 33.333 0.00 0.00 0.00 3.01
2475 3166 8.713737 ACCGTTTAGATATTTAAGACAACTCC 57.286 34.615 0.00 0.00 0.00 3.85
2476 3167 7.767659 ACCGTTTAGATATTTAAGACAACTCCC 59.232 37.037 0.00 0.00 0.00 4.30
2477 3168 7.767198 CCGTTTAGATATTTAAGACAACTCCCA 59.233 37.037 0.00 0.00 0.00 4.37
2478 3169 9.158233 CGTTTAGATATTTAAGACAACTCCCAA 57.842 33.333 0.00 0.00 0.00 4.12
2482 3173 8.934023 AGATATTTAAGACAACTCCCAAAACA 57.066 30.769 0.00 0.00 0.00 2.83
2483 3174 9.014297 AGATATTTAAGACAACTCCCAAAACAG 57.986 33.333 0.00 0.00 0.00 3.16
2484 3175 8.706322 ATATTTAAGACAACTCCCAAAACAGT 57.294 30.769 0.00 0.00 0.00 3.55
2485 3176 6.844097 TTTAAGACAACTCCCAAAACAGTT 57.156 33.333 0.00 0.00 32.87 3.16
2486 3177 4.983671 AAGACAACTCCCAAAACAGTTC 57.016 40.909 0.00 0.00 30.06 3.01
2487 3178 3.963129 AGACAACTCCCAAAACAGTTCA 58.037 40.909 0.00 0.00 30.06 3.18
2488 3179 4.340617 AGACAACTCCCAAAACAGTTCAA 58.659 39.130 0.00 0.00 30.06 2.69
2489 3180 4.956075 AGACAACTCCCAAAACAGTTCAAT 59.044 37.500 0.00 0.00 30.06 2.57
2490 3181 5.422012 AGACAACTCCCAAAACAGTTCAATT 59.578 36.000 0.00 0.00 30.06 2.32
2491 3182 6.048732 ACAACTCCCAAAACAGTTCAATTT 57.951 33.333 0.00 0.00 30.06 1.82
2492 3183 6.106003 ACAACTCCCAAAACAGTTCAATTTC 58.894 36.000 0.00 0.00 30.06 2.17
2493 3184 5.930837 ACTCCCAAAACAGTTCAATTTCA 57.069 34.783 0.00 0.00 0.00 2.69
2494 3185 5.906073 ACTCCCAAAACAGTTCAATTTCAG 58.094 37.500 0.00 0.00 0.00 3.02
2495 3186 4.692228 TCCCAAAACAGTTCAATTTCAGC 58.308 39.130 0.00 0.00 0.00 4.26
2496 3187 4.405358 TCCCAAAACAGTTCAATTTCAGCT 59.595 37.500 0.00 0.00 0.00 4.24
2497 3188 4.508861 CCCAAAACAGTTCAATTTCAGCTG 59.491 41.667 7.63 7.63 0.00 4.24
2498 3189 5.111293 CCAAAACAGTTCAATTTCAGCTGT 58.889 37.500 14.67 0.00 41.51 4.40
2499 3190 5.232838 CCAAAACAGTTCAATTTCAGCTGTC 59.767 40.000 14.67 0.00 39.19 3.51
2500 3191 5.841957 AAACAGTTCAATTTCAGCTGTCT 57.158 34.783 14.67 0.00 39.19 3.41
2501 3192 6.942532 AAACAGTTCAATTTCAGCTGTCTA 57.057 33.333 14.67 0.36 39.19 2.59
2502 3193 6.942532 AACAGTTCAATTTCAGCTGTCTAA 57.057 33.333 14.67 7.33 39.19 2.10
2503 3194 6.942532 ACAGTTCAATTTCAGCTGTCTAAA 57.057 33.333 14.67 7.59 35.78 1.85
2504 3195 7.333528 ACAGTTCAATTTCAGCTGTCTAAAA 57.666 32.000 14.67 7.20 35.78 1.52
2505 3196 7.196331 ACAGTTCAATTTCAGCTGTCTAAAAC 58.804 34.615 14.67 11.99 35.78 2.43
2506 3197 6.358030 CAGTTCAATTTCAGCTGTCTAAAACG 59.642 38.462 14.67 3.27 0.00 3.60
2507 3198 6.038271 AGTTCAATTTCAGCTGTCTAAAACGT 59.962 34.615 14.67 0.00 0.00 3.99
2508 3199 5.985781 TCAATTTCAGCTGTCTAAAACGTC 58.014 37.500 14.67 0.00 0.00 4.34
2509 3200 5.758296 TCAATTTCAGCTGTCTAAAACGTCT 59.242 36.000 14.67 0.00 0.00 4.18
2510 3201 6.260050 TCAATTTCAGCTGTCTAAAACGTCTT 59.740 34.615 14.67 0.00 0.00 3.01
2511 3202 7.439955 TCAATTTCAGCTGTCTAAAACGTCTTA 59.560 33.333 14.67 0.00 0.00 2.10
2512 3203 7.907214 ATTTCAGCTGTCTAAAACGTCTTAT 57.093 32.000 14.67 0.00 0.00 1.73
2513 3204 8.997621 ATTTCAGCTGTCTAAAACGTCTTATA 57.002 30.769 14.67 0.00 0.00 0.98
2514 3205 8.821147 TTTCAGCTGTCTAAAACGTCTTATAA 57.179 30.769 14.67 0.00 0.00 0.98
2515 3206 8.821147 TTCAGCTGTCTAAAACGTCTTATAAA 57.179 30.769 14.67 0.00 0.00 1.40
2516 3207 8.821147 TCAGCTGTCTAAAACGTCTTATAAAA 57.179 30.769 14.67 0.00 0.00 1.52
2517 3208 8.922676 TCAGCTGTCTAAAACGTCTTATAAAAG 58.077 33.333 14.67 0.00 0.00 2.27
2518 3209 8.709646 CAGCTGTCTAAAACGTCTTATAAAAGT 58.290 33.333 5.25 0.00 34.13 2.66
2519 3210 8.709646 AGCTGTCTAAAACGTCTTATAAAAGTG 58.290 33.333 0.00 0.00 34.13 3.16
2520 3211 8.706035 GCTGTCTAAAACGTCTTATAAAAGTGA 58.294 33.333 0.00 0.00 34.13 3.41
2527 3218 7.653767 AACGTCTTATAAAAGTGAACAGAGG 57.346 36.000 0.00 0.00 34.13 3.69
2528 3219 6.164176 ACGTCTTATAAAAGTGAACAGAGGG 58.836 40.000 0.00 0.00 34.13 4.30
2529 3220 6.014840 ACGTCTTATAAAAGTGAACAGAGGGA 60.015 38.462 0.00 0.00 34.13 4.20
2530 3221 6.531948 CGTCTTATAAAAGTGAACAGAGGGAG 59.468 42.308 0.00 0.00 34.13 4.30
2531 3222 7.387643 GTCTTATAAAAGTGAACAGAGGGAGT 58.612 38.462 0.00 0.00 34.13 3.85
2532 3223 8.529476 GTCTTATAAAAGTGAACAGAGGGAGTA 58.471 37.037 0.00 0.00 34.13 2.59
2731 3422 0.171231 GCGGCAATCTTTCCAAGGAC 59.829 55.000 0.00 0.00 0.00 3.85
2752 3443 5.240623 GGACACAACAAATCATTCCACTACA 59.759 40.000 0.00 0.00 0.00 2.74
2921 3616 7.325660 AGTGTCTTCATTATAAATGGTGCAG 57.674 36.000 0.00 0.00 0.00 4.41
2922 3617 6.886459 AGTGTCTTCATTATAAATGGTGCAGT 59.114 34.615 0.00 0.00 0.00 4.40
2923 3618 6.968904 GTGTCTTCATTATAAATGGTGCAGTG 59.031 38.462 0.00 0.00 0.00 3.66
2924 3619 6.658816 TGTCTTCATTATAAATGGTGCAGTGT 59.341 34.615 0.00 0.00 0.00 3.55
2925 3620 7.148255 TGTCTTCATTATAAATGGTGCAGTGTC 60.148 37.037 0.00 0.00 0.00 3.67
2926 3621 7.066284 GTCTTCATTATAAATGGTGCAGTGTCT 59.934 37.037 0.00 0.00 0.00 3.41
2927 3622 7.611467 TCTTCATTATAAATGGTGCAGTGTCTT 59.389 33.333 0.00 0.00 0.00 3.01
2928 3623 7.320443 TCATTATAAATGGTGCAGTGTCTTC 57.680 36.000 0.00 0.00 0.00 2.87
2929 3624 6.883756 TCATTATAAATGGTGCAGTGTCTTCA 59.116 34.615 0.00 0.00 0.00 3.02
2930 3625 7.557358 TCATTATAAATGGTGCAGTGTCTTCAT 59.443 33.333 0.00 0.00 0.00 2.57
2931 3626 7.701539 TTATAAATGGTGCAGTGTCTTCATT 57.298 32.000 0.00 0.00 0.00 2.57
2932 3627 8.800370 TTATAAATGGTGCAGTGTCTTCATTA 57.200 30.769 0.00 0.00 0.00 1.90
2933 3628 7.886629 ATAAATGGTGCAGTGTCTTCATTAT 57.113 32.000 0.00 0.00 0.00 1.28
2934 3629 8.978874 ATAAATGGTGCAGTGTCTTCATTATA 57.021 30.769 0.00 0.00 0.00 0.98
2935 3630 7.701539 AAATGGTGCAGTGTCTTCATTATAA 57.298 32.000 0.00 0.00 0.00 0.98
2936 3631 7.701539 AATGGTGCAGTGTCTTCATTATAAA 57.298 32.000 0.00 0.00 0.00 1.40
2937 3632 7.886629 ATGGTGCAGTGTCTTCATTATAAAT 57.113 32.000 0.00 0.00 0.00 1.40
2938 3633 7.087409 TGGTGCAGTGTCTTCATTATAAATG 57.913 36.000 0.00 0.00 0.00 2.32
2939 3634 6.095300 TGGTGCAGTGTCTTCATTATAAATGG 59.905 38.462 0.00 0.00 0.00 3.16
2940 3635 6.095440 GGTGCAGTGTCTTCATTATAAATGGT 59.905 38.462 0.00 0.00 0.00 3.55
2941 3636 6.968904 GTGCAGTGTCTTCATTATAAATGGTG 59.031 38.462 0.00 0.00 0.00 4.17
2942 3637 5.973565 GCAGTGTCTTCATTATAAATGGTGC 59.026 40.000 0.12 0.00 0.00 5.01
2943 3638 6.404623 GCAGTGTCTTCATTATAAATGGTGCA 60.405 38.462 0.12 0.00 0.00 4.57
3053 3748 5.220912 GCATCAAATCCATTCATTCGTCAGA 60.221 40.000 0.00 0.00 0.00 3.27
3252 3947 0.745845 GTCAGAGATTGCACCGCCAT 60.746 55.000 0.00 0.00 0.00 4.40
3383 4078 6.428771 GCCAGTAGTATTTTGAAACTGTACCA 59.571 38.462 0.00 0.00 36.63 3.25
3448 4143 2.438254 GCCCACGTGCCATGATGA 60.438 61.111 10.91 0.00 0.00 2.92
3632 4327 8.687292 AACAAATACATACATGCAGATCTGAT 57.313 30.769 27.04 13.48 0.00 2.90
3636 4331 8.774890 AATACATACATGCAGATCTGATCTTC 57.225 34.615 27.04 13.39 37.58 2.87
3637 4332 6.422344 ACATACATGCAGATCTGATCTTCT 57.578 37.500 27.04 3.28 37.58 2.85
3638 4333 6.828788 ACATACATGCAGATCTGATCTTCTT 58.171 36.000 27.04 8.47 37.58 2.52
3639 4334 7.960262 ACATACATGCAGATCTGATCTTCTTA 58.040 34.615 27.04 7.45 37.58 2.10
3640 4335 8.427276 ACATACATGCAGATCTGATCTTCTTAA 58.573 33.333 27.04 4.22 37.58 1.85
3641 4336 9.438228 CATACATGCAGATCTGATCTTCTTAAT 57.562 33.333 27.04 6.07 37.58 1.40
3687 4382 2.943033 ACTCTTGCGTTACTGTTGCTTT 59.057 40.909 0.00 0.00 0.00 3.51
3689 4384 4.573201 ACTCTTGCGTTACTGTTGCTTTAA 59.427 37.500 0.00 0.00 0.00 1.52
3691 4386 3.612472 TGCGTTACTGTTGCTTTAACC 57.388 42.857 0.00 0.00 38.55 2.85
3692 4387 2.943690 TGCGTTACTGTTGCTTTAACCA 59.056 40.909 0.00 0.00 38.55 3.67
3693 4388 3.566322 TGCGTTACTGTTGCTTTAACCAT 59.434 39.130 0.00 0.00 38.55 3.55
3694 4389 4.755629 TGCGTTACTGTTGCTTTAACCATA 59.244 37.500 0.00 0.00 38.55 2.74
3695 4390 5.106869 TGCGTTACTGTTGCTTTAACCATAG 60.107 40.000 0.00 0.00 38.55 2.23
3698 4393 7.577979 CGTTACTGTTGCTTTAACCATAGAAA 58.422 34.615 0.00 0.00 38.55 2.52
3699 4394 7.744715 CGTTACTGTTGCTTTAACCATAGAAAG 59.255 37.037 0.00 0.00 38.55 2.62
3707 4402 6.500684 CTTTAACCATAGAAAGCTCTGCAA 57.499 37.500 0.00 0.00 32.70 4.08
3708 4403 6.500684 TTTAACCATAGAAAGCTCTGCAAG 57.499 37.500 0.00 0.00 32.70 4.01
3709 4404 3.710209 ACCATAGAAAGCTCTGCAAGT 57.290 42.857 0.00 0.00 32.70 3.16
3710 4405 4.826274 ACCATAGAAAGCTCTGCAAGTA 57.174 40.909 0.00 0.00 32.70 2.24
3711 4406 5.365021 ACCATAGAAAGCTCTGCAAGTAT 57.635 39.130 0.00 0.00 32.70 2.12
3712 4407 5.749462 ACCATAGAAAGCTCTGCAAGTATT 58.251 37.500 0.00 0.00 32.70 1.89
3713 4408 5.587844 ACCATAGAAAGCTCTGCAAGTATTG 59.412 40.000 0.00 0.00 40.25 1.90
3726 4442 1.742761 AGTATTGCAGCGTGCTTCAT 58.257 45.000 10.54 4.29 45.31 2.57
3796 4512 2.976882 TGGAGATCATGGAGCATCATCA 59.023 45.455 0.00 0.00 36.25 3.07
3922 4638 2.502142 TCCATGAGCTGAGCAACATT 57.498 45.000 7.39 0.00 0.00 2.71
3962 4678 0.902516 GGTGTCTCAGCAGGGAGAGT 60.903 60.000 3.35 0.00 44.17 3.24
4090 4809 0.534412 AGCTCCAAGATGTCGGACTG 59.466 55.000 9.88 0.00 0.00 3.51
4165 4886 8.791327 TGAATCTTAGTTGTTTAGCATGATGA 57.209 30.769 0.00 0.00 0.00 2.92
4169 4890 8.429493 TCTTAGTTGTTTAGCATGATGATCTG 57.571 34.615 0.00 0.00 0.00 2.90
4170 4891 7.496920 TCTTAGTTGTTTAGCATGATGATCTGG 59.503 37.037 0.00 0.00 0.00 3.86
4296 5017 5.045215 TCCGTTTGAGCGACGATTAATATT 58.955 37.500 0.00 0.00 42.82 1.28
4321 5044 3.950397 TGGAGGGTATGTGATGTTTGTC 58.050 45.455 0.00 0.00 0.00 3.18
4510 5233 6.476378 ACTATGTTTTCTGTGCCAATACTCT 58.524 36.000 0.00 0.00 0.00 3.24
4529 5252 9.607333 AATACTCTCTCCATTCCATAATGTAGA 57.393 33.333 0.00 0.00 40.84 2.59
4616 5340 9.959721 AGTTACATCTAGAATACCAAACACATT 57.040 29.630 0.00 0.00 0.00 2.71
4647 5373 5.065704 CATCATAAGATGTACTCCCTCCG 57.934 47.826 0.00 0.00 45.28 4.63
4648 5374 4.180377 TCATAAGATGTACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
4649 5375 5.314718 TCATAAGATGTACTCCCTCCGTA 57.685 43.478 0.00 0.00 0.00 4.02
4650 5376 5.698104 TCATAAGATGTACTCCCTCCGTAA 58.302 41.667 0.00 0.00 0.00 3.18
4651 5377 6.131264 TCATAAGATGTACTCCCTCCGTAAA 58.869 40.000 0.00 0.00 0.00 2.01
4652 5378 6.264744 TCATAAGATGTACTCCCTCCGTAAAG 59.735 42.308 0.00 0.00 0.00 1.85
4653 5379 4.246712 AGATGTACTCCCTCCGTAAAGA 57.753 45.455 0.00 0.00 0.00 2.52
4654 5380 4.607239 AGATGTACTCCCTCCGTAAAGAA 58.393 43.478 0.00 0.00 0.00 2.52
4655 5381 5.021458 AGATGTACTCCCTCCGTAAAGAAA 58.979 41.667 0.00 0.00 0.00 2.52
4656 5382 5.661759 AGATGTACTCCCTCCGTAAAGAAAT 59.338 40.000 0.00 0.00 0.00 2.17
4657 5383 6.837568 AGATGTACTCCCTCCGTAAAGAAATA 59.162 38.462 0.00 0.00 0.00 1.40
4658 5384 6.212888 TGTACTCCCTCCGTAAAGAAATAC 57.787 41.667 0.00 0.00 0.00 1.89
4659 5385 5.954150 TGTACTCCCTCCGTAAAGAAATACT 59.046 40.000 0.00 0.00 0.00 2.12
4660 5386 7.118723 TGTACTCCCTCCGTAAAGAAATACTA 58.881 38.462 0.00 0.00 0.00 1.82
4661 5387 7.615365 TGTACTCCCTCCGTAAAGAAATACTAA 59.385 37.037 0.00 0.00 0.00 2.24
4662 5388 7.110043 ACTCCCTCCGTAAAGAAATACTAAG 57.890 40.000 0.00 0.00 0.00 2.18
4663 5389 6.894103 ACTCCCTCCGTAAAGAAATACTAAGA 59.106 38.462 0.00 0.00 0.00 2.10
4664 5390 7.068470 ACTCCCTCCGTAAAGAAATACTAAGAG 59.932 40.741 0.00 0.00 0.00 2.85
4665 5391 5.984323 CCCTCCGTAAAGAAATACTAAGAGC 59.016 44.000 0.00 0.00 0.00 4.09
4666 5392 5.686397 CCTCCGTAAAGAAATACTAAGAGCG 59.314 44.000 0.00 0.00 0.00 5.03
4667 5393 6.199937 TCCGTAAAGAAATACTAAGAGCGT 57.800 37.500 0.00 0.00 0.00 5.07
4668 5394 6.624423 TCCGTAAAGAAATACTAAGAGCGTT 58.376 36.000 0.00 0.00 0.00 4.84
4669 5395 7.092716 TCCGTAAAGAAATACTAAGAGCGTTT 58.907 34.615 0.00 0.00 0.00 3.60
4670 5396 8.243426 TCCGTAAAGAAATACTAAGAGCGTTTA 58.757 33.333 0.00 0.00 0.00 2.01
4671 5397 8.529911 CCGTAAAGAAATACTAAGAGCGTTTAG 58.470 37.037 8.23 8.23 36.83 1.85
4672 5398 9.282247 CGTAAAGAAATACTAAGAGCGTTTAGA 57.718 33.333 14.60 2.65 35.20 2.10
4675 5401 9.871238 AAAGAAATACTAAGAGCGTTTAGATCA 57.129 29.630 14.60 3.28 37.82 2.92
4676 5402 8.859517 AGAAATACTAAGAGCGTTTAGATCAC 57.140 34.615 14.60 5.06 37.82 3.06
4677 5403 8.688151 AGAAATACTAAGAGCGTTTAGATCACT 58.312 33.333 14.60 6.60 37.82 3.41
4678 5404 8.859517 AAATACTAAGAGCGTTTAGATCACTC 57.140 34.615 14.60 0.00 37.82 3.51
4679 5405 7.811117 ATACTAAGAGCGTTTAGATCACTCT 57.189 36.000 14.60 0.00 39.34 3.24
4680 5406 8.905660 ATACTAAGAGCGTTTAGATCACTCTA 57.094 34.615 14.60 0.00 36.72 2.43
4681 5407 7.018635 ACTAAGAGCGTTTAGATCACTCTAC 57.981 40.000 14.60 0.00 36.72 2.59
4682 5408 6.824704 ACTAAGAGCGTTTAGATCACTCTACT 59.175 38.462 14.60 0.00 36.72 2.57
4683 5409 5.744666 AGAGCGTTTAGATCACTCTACTC 57.255 43.478 0.00 0.00 37.82 2.59
4684 5410 5.433526 AGAGCGTTTAGATCACTCTACTCT 58.566 41.667 0.00 0.00 37.82 3.24
4685 5411 5.526111 AGAGCGTTTAGATCACTCTACTCTC 59.474 44.000 0.00 0.00 37.82 3.20
4686 5412 4.271533 AGCGTTTAGATCACTCTACTCTCG 59.728 45.833 0.00 0.00 33.66 4.04
4687 5413 4.034279 GCGTTTAGATCACTCTACTCTCGT 59.966 45.833 0.00 0.00 33.66 4.18
4688 5414 5.494618 CGTTTAGATCACTCTACTCTCGTG 58.505 45.833 0.00 0.00 33.66 4.35
4689 5415 5.291371 CGTTTAGATCACTCTACTCTCGTGA 59.709 44.000 0.00 0.00 41.36 4.35
4691 5417 7.169476 CGTTTAGATCACTCTACTCTCGTGATA 59.831 40.741 4.33 0.00 45.47 2.15
4692 5418 8.995220 GTTTAGATCACTCTACTCTCGTGATAT 58.005 37.037 4.33 4.43 45.47 1.63
4696 5422 8.995220 AGATCACTCTACTCTCGTGATATAAAC 58.005 37.037 4.33 0.00 45.47 2.01
4697 5423 7.175073 TCACTCTACTCTCGTGATATAAACG 57.825 40.000 4.44 4.44 42.36 3.60
4698 5424 5.846994 CACTCTACTCTCGTGATATAAACGC 59.153 44.000 5.71 0.00 40.80 4.84
4699 5425 5.759273 ACTCTACTCTCGTGATATAAACGCT 59.241 40.000 5.71 0.00 40.80 5.07
4700 5426 6.073657 ACTCTACTCTCGTGATATAAACGCTC 60.074 42.308 5.71 0.00 40.80 5.03
4701 5427 5.990386 TCTACTCTCGTGATATAAACGCTCT 59.010 40.000 5.71 0.00 40.80 4.09
4702 5428 5.502153 ACTCTCGTGATATAAACGCTCTT 57.498 39.130 5.71 0.00 40.80 2.85
4703 5429 6.615264 ACTCTCGTGATATAAACGCTCTTA 57.385 37.500 5.71 0.00 40.80 2.10
4704 5430 7.204496 ACTCTCGTGATATAAACGCTCTTAT 57.796 36.000 5.71 0.00 40.80 1.73
4705 5431 8.320396 ACTCTCGTGATATAAACGCTCTTATA 57.680 34.615 5.71 0.00 40.80 0.98
4706 5432 8.948145 ACTCTCGTGATATAAACGCTCTTATAT 58.052 33.333 5.71 6.80 40.80 0.86
4707 5433 9.776158 CTCTCGTGATATAAACGCTCTTATATT 57.224 33.333 5.71 0.00 40.80 1.28
4710 5436 9.902196 TCGTGATATAAACGCTCTTATATTTCA 57.098 29.630 5.71 3.05 40.80 2.69
4719 5445 8.594881 AACGCTCTTATATTTCATTACAGAGG 57.405 34.615 0.00 0.00 0.00 3.69
4720 5446 7.155328 ACGCTCTTATATTTCATTACAGAGGG 58.845 38.462 8.36 8.36 42.53 4.30
4721 5447 7.015292 ACGCTCTTATATTTCATTACAGAGGGA 59.985 37.037 14.96 0.00 40.49 4.20
4722 5448 7.543868 CGCTCTTATATTTCATTACAGAGGGAG 59.456 40.741 4.76 0.00 40.49 4.30
4723 5449 8.371699 GCTCTTATATTTCATTACAGAGGGAGT 58.628 37.037 0.00 0.00 0.00 3.85
4769 5497 7.777440 TGGTATTGTGCATATAAATGGTTCTCA 59.223 33.333 0.00 0.00 33.38 3.27
4785 5513 7.411486 TGGTTCTCAATAAACTTGGTCAAAA 57.589 32.000 0.00 0.00 0.00 2.44
4807 5535 9.264782 CAAAATTTGCAAAGTTTAACAAGTCAG 57.735 29.630 30.34 15.26 34.47 3.51
4823 5551 5.288712 ACAAGTCAGAAAATCTATACGCACG 59.711 40.000 0.00 0.00 0.00 5.34
4832 5560 6.706055 AAATCTATACGCACGACATTATGG 57.294 37.500 0.00 0.00 0.00 2.74
4902 5630 0.386113 TAGGTTTTGTGCGCCAAACC 59.614 50.000 29.40 29.40 42.63 3.27
4957 5686 5.872963 TGGGTTAAGAGTCTTCCCTTAAAC 58.127 41.667 23.57 15.12 40.18 2.01
4965 5694 5.303845 AGAGTCTTCCCTTAAACGTGTACTT 59.696 40.000 0.00 0.00 0.00 2.24
5042 5771 4.400961 GAGCGCAGGGCCAACTCT 62.401 66.667 11.47 0.00 45.17 3.24
5287 6019 1.748493 CCGTGGTCATGTAAATTGGGG 59.252 52.381 0.00 0.00 0.00 4.96
5289 6021 2.619332 CGTGGTCATGTAAATTGGGGGA 60.619 50.000 0.00 0.00 0.00 4.81
5391 6124 1.275010 TCATGGCGTGCGGTGATATAT 59.725 47.619 0.65 0.00 0.00 0.86
5392 6125 2.494073 TCATGGCGTGCGGTGATATATA 59.506 45.455 0.65 0.00 0.00 0.86
5460 6193 4.459089 GCCTCTGTCGGTCCTGCC 62.459 72.222 0.00 0.00 0.00 4.85
5464 6197 2.046892 CTGTCGGTCCTGCCCTTG 60.047 66.667 0.00 0.00 0.00 3.61
5465 6198 4.329545 TGTCGGTCCTGCCCTTGC 62.330 66.667 0.00 0.00 38.26 4.01
5494 6227 2.690497 CTGTCTCTCTAATTCCGGCTCA 59.310 50.000 0.00 0.00 0.00 4.26
5547 6295 8.669946 TCAGAAACTTTTTCTGTTTTTGGTTT 57.330 26.923 22.05 0.00 44.58 3.27
5611 6374 1.215924 TCCTGTTTCGAACCCCCTTTT 59.784 47.619 0.00 0.00 0.00 2.27
5654 6417 2.087009 GTCGAAGAGAACGGTGGCG 61.087 63.158 0.00 0.00 36.95 5.69
5655 6418 2.809601 CGAAGAGAACGGTGGCGG 60.810 66.667 0.00 0.00 0.00 6.13
5656 6419 3.119096 GAAGAGAACGGTGGCGGC 61.119 66.667 0.00 0.00 0.00 6.53
5859 6631 3.757248 AAGATAAGCTGGGCGGGCG 62.757 63.158 0.00 0.00 34.52 6.13
5928 6700 3.512516 CTACCCGTCCGTCCGTCC 61.513 72.222 0.00 0.00 0.00 4.79
5941 6713 2.156098 CCGTCCCATCCCATCCCAT 61.156 63.158 0.00 0.00 0.00 4.00
5943 6715 1.770324 GTCCCATCCCATCCCATCC 59.230 63.158 0.00 0.00 0.00 3.51
5944 6716 1.465986 TCCCATCCCATCCCATCCC 60.466 63.158 0.00 0.00 0.00 3.85
5945 6717 2.759114 CCATCCCATCCCATCCCG 59.241 66.667 0.00 0.00 0.00 5.14
5946 6718 2.156098 CCATCCCATCCCATCCCGT 61.156 63.158 0.00 0.00 0.00 5.28
5947 6719 1.376466 CATCCCATCCCATCCCGTC 59.624 63.158 0.00 0.00 0.00 4.79
6022 6798 2.444895 GCAACCCAACCCAACCCA 60.445 61.111 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.120589 CCTAAAATGCTACTTCCTCCGTC 58.879 47.826 0.00 0.00 0.00 4.79
30 31 5.296813 AGTCGTGGTAAAAAGATCAATGC 57.703 39.130 0.00 0.00 0.00 3.56
36 37 7.215085 ACTTGTAGAAGTCGTGGTAAAAAGAT 58.785 34.615 0.00 0.00 38.01 2.40
38 39 6.839820 ACTTGTAGAAGTCGTGGTAAAAAG 57.160 37.500 0.00 0.00 38.01 2.27
100 101 9.307121 CCTAAAACATAGGCGATGATCTAATAG 57.693 37.037 14.76 7.36 39.06 1.73
159 160 3.107402 TCACCTCACTCTGCTATCCTT 57.893 47.619 0.00 0.00 0.00 3.36
160 161 2.836636 TCACCTCACTCTGCTATCCT 57.163 50.000 0.00 0.00 0.00 3.24
167 168 4.938226 GGGTTAAAAGATCACCTCACTCTG 59.062 45.833 0.00 0.00 0.00 3.35
174 175 2.817844 GCAACGGGTTAAAAGATCACCT 59.182 45.455 0.00 0.00 0.00 4.00
181 182 2.474735 GTGCATTGCAACGGGTTAAAAG 59.525 45.455 13.94 0.00 41.47 2.27
184 185 1.032794 TGTGCATTGCAACGGGTTAA 58.967 45.000 13.94 0.00 41.47 2.01
198 199 2.339418 CGGAGGTAATACGTTTGTGCA 58.661 47.619 0.00 0.00 0.00 4.57
207 208 9.768662 TTGATAAATTTAGGACGGAGGTAATAC 57.231 33.333 3.94 0.00 0.00 1.89
209 210 9.689501 TTTTGATAAATTTAGGACGGAGGTAAT 57.310 29.630 3.94 0.00 0.00 1.89
210 211 9.517868 TTTTTGATAAATTTAGGACGGAGGTAA 57.482 29.630 3.94 0.00 0.00 2.85
211 212 8.949177 GTTTTTGATAAATTTAGGACGGAGGTA 58.051 33.333 3.94 0.00 0.00 3.08
212 213 7.361457 CGTTTTTGATAAATTTAGGACGGAGGT 60.361 37.037 3.94 0.00 0.00 3.85
213 214 6.964934 CGTTTTTGATAAATTTAGGACGGAGG 59.035 38.462 3.94 0.00 0.00 4.30
214 215 6.964934 CCGTTTTTGATAAATTTAGGACGGAG 59.035 38.462 20.29 5.52 40.22 4.63
215 216 6.127952 CCCGTTTTTGATAAATTTAGGACGGA 60.128 38.462 23.45 0.00 40.22 4.69
216 217 6.031471 CCCGTTTTTGATAAATTTAGGACGG 58.969 40.000 19.14 19.14 38.74 4.79
217 218 6.744082 GTCCCGTTTTTGATAAATTTAGGACG 59.256 38.462 3.94 7.23 30.60 4.79
218 219 7.595604 TGTCCCGTTTTTGATAAATTTAGGAC 58.404 34.615 15.42 15.42 39.44 3.85
219 220 7.762588 TGTCCCGTTTTTGATAAATTTAGGA 57.237 32.000 3.94 0.00 0.00 2.94
231 232 9.887406 GGTAATATTACATATGTCCCGTTTTTG 57.113 33.333 23.59 0.00 35.37 2.44
232 233 9.856162 AGGTAATATTACATATGTCCCGTTTTT 57.144 29.630 23.59 1.68 35.37 1.94
233 234 9.498176 GAGGTAATATTACATATGTCCCGTTTT 57.502 33.333 23.59 3.18 35.37 2.43
234 235 8.098912 GGAGGTAATATTACATATGTCCCGTTT 58.901 37.037 23.59 4.19 35.37 3.60
235 236 7.578189 CGGAGGTAATATTACATATGTCCCGTT 60.578 40.741 23.59 6.66 35.37 4.44
236 237 6.127535 CGGAGGTAATATTACATATGTCCCGT 60.128 42.308 23.59 0.00 35.37 5.28
237 238 6.127535 ACGGAGGTAATATTACATATGTCCCG 60.128 42.308 24.18 24.18 35.37 5.14
238 239 7.179076 ACGGAGGTAATATTACATATGTCCC 57.821 40.000 23.59 14.04 35.37 4.46
239 240 8.092687 ACAACGGAGGTAATATTACATATGTCC 58.907 37.037 23.59 18.20 35.37 4.02
245 246 9.199982 CGAATTACAACGGAGGTAATATTACAT 57.800 33.333 23.59 18.54 39.77 2.29
246 247 8.578308 CGAATTACAACGGAGGTAATATTACA 57.422 34.615 23.59 3.27 39.77 2.41
260 261 1.274596 CTCCGTCCCGAATTACAACG 58.725 55.000 0.00 0.00 0.00 4.10
263 264 0.324552 TCCCTCCGTCCCGAATTACA 60.325 55.000 0.00 0.00 0.00 2.41
272 273 2.675583 ACCTAAATACTCCCTCCGTCC 58.324 52.381 0.00 0.00 0.00 4.79
273 274 3.740452 GCAACCTAAATACTCCCTCCGTC 60.740 52.174 0.00 0.00 0.00 4.79
274 275 2.169978 GCAACCTAAATACTCCCTCCGT 59.830 50.000 0.00 0.00 0.00 4.69
275 276 2.169769 TGCAACCTAAATACTCCCTCCG 59.830 50.000 0.00 0.00 0.00 4.63
276 277 3.542648 GTGCAACCTAAATACTCCCTCC 58.457 50.000 0.00 0.00 0.00 4.30
291 292 6.413818 GCATAATAACATTCTAACGGTGCAAC 59.586 38.462 0.00 0.00 0.00 4.17
292 293 6.459024 GGCATAATAACATTCTAACGGTGCAA 60.459 38.462 0.00 0.00 0.00 4.08
293 294 5.008217 GGCATAATAACATTCTAACGGTGCA 59.992 40.000 0.00 0.00 0.00 4.57
294 295 5.008217 TGGCATAATAACATTCTAACGGTGC 59.992 40.000 0.00 0.00 0.00 5.01
295 296 6.427150 GTGGCATAATAACATTCTAACGGTG 58.573 40.000 0.00 0.00 0.00 4.94
296 297 5.235616 CGTGGCATAATAACATTCTAACGGT 59.764 40.000 0.00 0.00 0.00 4.83
297 298 5.464057 TCGTGGCATAATAACATTCTAACGG 59.536 40.000 0.00 0.00 0.00 4.44
298 299 6.519353 TCGTGGCATAATAACATTCTAACG 57.481 37.500 0.00 0.00 0.00 3.18
299 300 7.298122 CCATCGTGGCATAATAACATTCTAAC 58.702 38.462 0.00 0.00 0.00 2.34
300 301 7.433708 CCATCGTGGCATAATAACATTCTAA 57.566 36.000 0.00 0.00 0.00 2.10
302 303 5.947228 CCATCGTGGCATAATAACATTCT 57.053 39.130 0.00 0.00 0.00 2.40
320 321 0.098728 CCATCAAAACGACGGCCATC 59.901 55.000 2.24 0.00 0.00 3.51
321 322 0.322098 TCCATCAAAACGACGGCCAT 60.322 50.000 2.24 0.00 0.00 4.40
326 327 3.536158 ATTGTGTCCATCAAAACGACG 57.464 42.857 0.00 0.00 0.00 5.12
329 330 7.065085 AGAGAAGATATTGTGTCCATCAAAACG 59.935 37.037 0.00 0.00 0.00 3.60
334 335 5.070981 GGGAGAGAAGATATTGTGTCCATCA 59.929 44.000 14.28 0.00 30.46 3.07
348 349 4.012374 GTGATTTGCAATGGGAGAGAAGA 58.988 43.478 0.00 0.00 0.00 2.87
349 350 3.181503 CGTGATTTGCAATGGGAGAGAAG 60.182 47.826 0.00 0.00 0.00 2.85
359 360 4.734402 GCATGTATGTCCGTGATTTGCAAT 60.734 41.667 0.00 0.00 0.00 3.56
363 364 2.607180 TCGCATGTATGTCCGTGATTTG 59.393 45.455 0.00 0.00 0.00 2.32
367 368 0.815095 ACTCGCATGTATGTCCGTGA 59.185 50.000 0.00 0.00 0.00 4.35
372 373 3.770666 ACTACACACTCGCATGTATGTC 58.229 45.455 0.00 0.00 31.10 3.06
404 637 9.462174 CTGTTCACTAGCATTTCATTGTTTAAA 57.538 29.630 0.00 0.00 0.00 1.52
405 638 8.081633 CCTGTTCACTAGCATTTCATTGTTTAA 58.918 33.333 0.00 0.00 0.00 1.52
418 651 1.845664 TGGGCCCTGTTCACTAGCA 60.846 57.895 25.70 0.00 0.00 3.49
419 652 1.377333 GTGGGCCCTGTTCACTAGC 60.377 63.158 25.70 0.00 0.00 3.42
420 653 1.079127 CGTGGGCCCTGTTCACTAG 60.079 63.158 25.70 0.00 0.00 2.57
507 741 2.905807 GATCGAGCCGTACGGGGAG 61.906 68.421 33.98 10.65 35.78 4.30
508 742 2.903855 GATCGAGCCGTACGGGGA 60.904 66.667 33.98 9.51 35.78 4.81
509 743 2.905880 AGATCGAGCCGTACGGGG 60.906 66.667 33.98 11.81 35.78 5.73
510 744 1.721664 TTCAGATCGAGCCGTACGGG 61.722 60.000 33.98 18.67 39.58 5.28
511 745 0.591741 GTTCAGATCGAGCCGTACGG 60.592 60.000 30.06 30.06 38.57 4.02
512 746 0.591741 GGTTCAGATCGAGCCGTACG 60.592 60.000 8.69 8.69 35.03 3.67
513 747 3.253416 GGTTCAGATCGAGCCGTAC 57.747 57.895 0.00 0.00 35.03 3.67
623 869 3.496331 TGATGGTTTTCCCCTTCTTGTC 58.504 45.455 0.00 0.00 39.73 3.18
646 896 1.075896 GGGGAGAGAGATCGGTGGT 60.076 63.158 0.00 0.00 0.00 4.16
1285 1907 3.688694 AGCACGAAGGTTGTATTGGTA 57.311 42.857 0.00 0.00 0.00 3.25
1286 1908 2.561478 AGCACGAAGGTTGTATTGGT 57.439 45.000 0.00 0.00 0.00 3.67
1294 1916 0.100503 GCAACACAAGCACGAAGGTT 59.899 50.000 0.00 0.00 38.79 3.50
1315 1937 4.650754 ACTAATCGCTGAACTAATCGGT 57.349 40.909 0.00 0.00 36.73 4.69
1326 1948 1.069358 GAGGGGAGGAACTAATCGCTG 59.931 57.143 0.00 0.00 41.55 5.18
1330 1952 0.393448 GCGGAGGGGAGGAACTAATC 59.607 60.000 0.00 0.00 41.55 1.75
1331 1953 1.400530 CGCGGAGGGGAGGAACTAAT 61.401 60.000 0.00 0.00 41.55 1.73
1332 1954 2.056223 CGCGGAGGGGAGGAACTAA 61.056 63.158 0.00 0.00 41.55 2.24
1388 2010 4.531912 CAAGCATGAGCCGCGCAG 62.532 66.667 8.75 0.00 43.56 5.18
1390 2012 1.775039 TAATCAAGCATGAGCCGCGC 61.775 55.000 0.00 0.00 43.56 6.86
1391 2013 0.234106 CTAATCAAGCATGAGCCGCG 59.766 55.000 0.00 0.00 43.56 6.46
1392 2014 1.303309 ACTAATCAAGCATGAGCCGC 58.697 50.000 0.00 0.00 43.56 6.53
1428 2051 2.100797 CATCCATGCACGTTGGCG 59.899 61.111 0.00 0.00 44.93 5.69
1528 2154 7.807977 AGTACACAAACACTCAAAGATCAAT 57.192 32.000 0.00 0.00 0.00 2.57
1538 2165 5.839621 TCTCCAGTAAGTACACAAACACTC 58.160 41.667 0.00 0.00 0.00 3.51
1563 2190 1.886861 AAGCAAACTACGACAGCGCG 61.887 55.000 0.00 0.00 42.48 6.86
1594 2222 1.302366 CAAGTGCAGAACAGCTGTCA 58.698 50.000 21.95 11.08 46.62 3.58
1744 2374 2.300152 TCGCATTGAGACTGGACTTCTT 59.700 45.455 0.00 0.00 0.00 2.52
1792 2426 8.561738 ACCAAGGTACTAGTTTACATTCAATG 57.438 34.615 0.00 0.00 38.49 2.82
1854 2488 1.673477 CCCTCACTGCACAGCACTA 59.327 57.895 0.00 0.00 33.79 2.74
2082 2717 4.241590 TGTTCAATCCACATTTGACAGC 57.758 40.909 0.00 0.00 33.03 4.40
2086 2721 8.408043 AGAAACTATGTTCAATCCACATTTGA 57.592 30.769 0.00 0.00 36.28 2.69
2211 2848 1.086634 CGAGGAAGCAGCTAAGCCAC 61.087 60.000 0.00 0.00 34.23 5.01
2280 2917 8.314021 AGAGGTCATTTACAAAATTTCCCATTC 58.686 33.333 0.00 0.00 0.00 2.67
2284 2921 7.666623 TCAAGAGGTCATTTACAAAATTTCCC 58.333 34.615 0.00 0.00 0.00 3.97
2293 2930 9.817809 GTCAATAGTATCAAGAGGTCATTTACA 57.182 33.333 0.00 0.00 0.00 2.41
2294 2931 9.262358 GGTCAATAGTATCAAGAGGTCATTTAC 57.738 37.037 0.00 0.00 0.00 2.01
2365 3002 6.714810 AGTTCAATATGGTTAACTTGCTGACA 59.285 34.615 5.42 0.00 0.00 3.58
2427 3118 3.492102 TCCAAAAGTGAACAGAGGGAG 57.508 47.619 0.00 0.00 0.00 4.30
2428 3119 3.458118 TCTTCCAAAAGTGAACAGAGGGA 59.542 43.478 0.00 0.00 33.95 4.20
2429 3120 3.565902 GTCTTCCAAAAGTGAACAGAGGG 59.434 47.826 0.00 0.00 33.95 4.30
2430 3121 3.565902 GGTCTTCCAAAAGTGAACAGAGG 59.434 47.826 0.00 0.00 33.95 3.69
2431 3122 3.248602 CGGTCTTCCAAAAGTGAACAGAG 59.751 47.826 0.00 0.00 33.95 3.35
2432 3123 3.202906 CGGTCTTCCAAAAGTGAACAGA 58.797 45.455 0.00 0.00 33.95 3.41
2433 3124 2.943033 ACGGTCTTCCAAAAGTGAACAG 59.057 45.455 0.00 0.00 33.95 3.16
2434 3125 2.993937 ACGGTCTTCCAAAAGTGAACA 58.006 42.857 0.00 0.00 33.95 3.18
2435 3126 4.365899 AAACGGTCTTCCAAAAGTGAAC 57.634 40.909 0.00 0.00 33.95 3.18
2436 3127 5.430007 TCTAAACGGTCTTCCAAAAGTGAA 58.570 37.500 0.00 0.00 33.95 3.18
2437 3128 5.026038 TCTAAACGGTCTTCCAAAAGTGA 57.974 39.130 0.00 0.00 33.95 3.41
2438 3129 5.941948 ATCTAAACGGTCTTCCAAAAGTG 57.058 39.130 0.00 0.00 33.95 3.16
2439 3130 8.631480 AAATATCTAAACGGTCTTCCAAAAGT 57.369 30.769 0.00 0.00 33.95 2.66
2442 3133 9.947433 TCTTAAATATCTAAACGGTCTTCCAAA 57.053 29.630 0.00 0.00 0.00 3.28
2443 3134 9.374838 GTCTTAAATATCTAAACGGTCTTCCAA 57.625 33.333 0.00 0.00 0.00 3.53
2444 3135 8.533657 TGTCTTAAATATCTAAACGGTCTTCCA 58.466 33.333 0.00 0.00 0.00 3.53
2445 3136 8.937634 TGTCTTAAATATCTAAACGGTCTTCC 57.062 34.615 0.00 0.00 0.00 3.46
2447 3138 9.939802 AGTTGTCTTAAATATCTAAACGGTCTT 57.060 29.630 0.00 0.00 0.00 3.01
2448 3139 9.583765 GAGTTGTCTTAAATATCTAAACGGTCT 57.416 33.333 0.00 0.00 0.00 3.85
2449 3140 8.815189 GGAGTTGTCTTAAATATCTAAACGGTC 58.185 37.037 0.00 0.00 0.00 4.79
2450 3141 7.767659 GGGAGTTGTCTTAAATATCTAAACGGT 59.232 37.037 0.00 0.00 0.00 4.83
2451 3142 7.767198 TGGGAGTTGTCTTAAATATCTAAACGG 59.233 37.037 0.00 0.00 0.00 4.44
2452 3143 8.712285 TGGGAGTTGTCTTAAATATCTAAACG 57.288 34.615 0.00 0.00 0.00 3.60
2457 3148 8.934023 TGTTTTGGGAGTTGTCTTAAATATCT 57.066 30.769 0.00 0.00 0.00 1.98
2458 3149 8.793592 ACTGTTTTGGGAGTTGTCTTAAATATC 58.206 33.333 0.00 0.00 0.00 1.63
2459 3150 8.706322 ACTGTTTTGGGAGTTGTCTTAAATAT 57.294 30.769 0.00 0.00 0.00 1.28
2460 3151 8.528044 AACTGTTTTGGGAGTTGTCTTAAATA 57.472 30.769 0.00 0.00 31.09 1.40
2461 3152 7.123547 TGAACTGTTTTGGGAGTTGTCTTAAAT 59.876 33.333 0.00 0.00 32.47 1.40
2462 3153 6.434652 TGAACTGTTTTGGGAGTTGTCTTAAA 59.565 34.615 0.00 0.00 32.47 1.52
2463 3154 5.946972 TGAACTGTTTTGGGAGTTGTCTTAA 59.053 36.000 0.00 0.00 32.47 1.85
2464 3155 5.502079 TGAACTGTTTTGGGAGTTGTCTTA 58.498 37.500 0.00 0.00 32.47 2.10
2465 3156 4.340617 TGAACTGTTTTGGGAGTTGTCTT 58.659 39.130 0.00 0.00 32.47 3.01
2466 3157 3.963129 TGAACTGTTTTGGGAGTTGTCT 58.037 40.909 0.00 0.00 32.47 3.41
2467 3158 4.712122 TTGAACTGTTTTGGGAGTTGTC 57.288 40.909 0.00 0.00 32.47 3.18
2468 3159 5.675684 AATTGAACTGTTTTGGGAGTTGT 57.324 34.783 0.00 0.00 32.47 3.32
2469 3160 6.105333 TGAAATTGAACTGTTTTGGGAGTTG 58.895 36.000 0.00 0.00 32.47 3.16
2470 3161 6.293004 TGAAATTGAACTGTTTTGGGAGTT 57.707 33.333 0.00 0.00 35.07 3.01
2471 3162 5.682212 GCTGAAATTGAACTGTTTTGGGAGT 60.682 40.000 0.00 0.00 0.00 3.85
2472 3163 4.746611 GCTGAAATTGAACTGTTTTGGGAG 59.253 41.667 0.00 0.00 0.00 4.30
2473 3164 4.405358 AGCTGAAATTGAACTGTTTTGGGA 59.595 37.500 0.00 0.00 0.00 4.37
2474 3165 4.508861 CAGCTGAAATTGAACTGTTTTGGG 59.491 41.667 8.42 0.00 0.00 4.12
2475 3166 5.111293 ACAGCTGAAATTGAACTGTTTTGG 58.889 37.500 23.35 0.00 38.38 3.28
2476 3167 6.038356 AGACAGCTGAAATTGAACTGTTTTG 58.962 36.000 23.35 0.00 41.45 2.44
2477 3168 6.212888 AGACAGCTGAAATTGAACTGTTTT 57.787 33.333 23.35 0.00 41.45 2.43
2478 3169 5.841957 AGACAGCTGAAATTGAACTGTTT 57.158 34.783 23.35 0.00 41.45 2.83
2479 3170 6.942532 TTAGACAGCTGAAATTGAACTGTT 57.057 33.333 23.35 0.00 41.45 3.16
2480 3171 6.942532 TTTAGACAGCTGAAATTGAACTGT 57.057 33.333 23.35 0.00 43.93 3.55
2481 3172 6.358030 CGTTTTAGACAGCTGAAATTGAACTG 59.642 38.462 23.35 9.82 33.03 3.16
2482 3173 6.038271 ACGTTTTAGACAGCTGAAATTGAACT 59.962 34.615 23.35 8.36 33.03 3.01
2483 3174 6.199393 ACGTTTTAGACAGCTGAAATTGAAC 58.801 36.000 23.35 15.30 33.03 3.18
2484 3175 6.260050 AGACGTTTTAGACAGCTGAAATTGAA 59.740 34.615 23.35 4.96 33.03 2.69
2485 3176 5.758296 AGACGTTTTAGACAGCTGAAATTGA 59.242 36.000 23.35 0.00 33.03 2.57
2486 3177 5.990408 AGACGTTTTAGACAGCTGAAATTG 58.010 37.500 23.35 9.51 33.03 2.32
2487 3178 6.619801 AAGACGTTTTAGACAGCTGAAATT 57.380 33.333 23.35 0.00 33.03 1.82
2488 3179 7.907214 ATAAGACGTTTTAGACAGCTGAAAT 57.093 32.000 23.35 8.03 33.03 2.17
2489 3180 8.821147 TTATAAGACGTTTTAGACAGCTGAAA 57.179 30.769 23.35 7.93 0.00 2.69
2490 3181 8.821147 TTTATAAGACGTTTTAGACAGCTGAA 57.179 30.769 23.35 0.48 0.00 3.02
2491 3182 8.821147 TTTTATAAGACGTTTTAGACAGCTGA 57.179 30.769 23.35 0.00 0.00 4.26
2492 3183 8.709646 ACTTTTATAAGACGTTTTAGACAGCTG 58.290 33.333 13.48 13.48 35.30 4.24
2493 3184 8.709646 CACTTTTATAAGACGTTTTAGACAGCT 58.290 33.333 4.75 0.00 35.30 4.24
2494 3185 8.706035 TCACTTTTATAAGACGTTTTAGACAGC 58.294 33.333 4.75 0.00 35.30 4.40
2501 3192 8.557029 CCTCTGTTCACTTTTATAAGACGTTTT 58.443 33.333 0.00 0.00 35.30 2.43
2502 3193 7.172703 CCCTCTGTTCACTTTTATAAGACGTTT 59.827 37.037 0.00 0.00 35.30 3.60
2503 3194 6.649557 CCCTCTGTTCACTTTTATAAGACGTT 59.350 38.462 0.00 0.00 35.30 3.99
2504 3195 6.014840 TCCCTCTGTTCACTTTTATAAGACGT 60.015 38.462 0.00 0.00 35.30 4.34
2505 3196 6.395629 TCCCTCTGTTCACTTTTATAAGACG 58.604 40.000 0.00 0.00 35.30 4.18
2506 3197 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
2507 3198 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
2511 3202 9.892130 CTTTATACTCCCTCTGTTCACTTTTAT 57.108 33.333 0.00 0.00 0.00 1.40
2512 3203 8.877195 ACTTTATACTCCCTCTGTTCACTTTTA 58.123 33.333 0.00 0.00 0.00 1.52
2513 3204 7.746703 ACTTTATACTCCCTCTGTTCACTTTT 58.253 34.615 0.00 0.00 0.00 2.27
2514 3205 7.317722 ACTTTATACTCCCTCTGTTCACTTT 57.682 36.000 0.00 0.00 0.00 2.66
2515 3206 6.936968 ACTTTATACTCCCTCTGTTCACTT 57.063 37.500 0.00 0.00 0.00 3.16
2516 3207 7.070074 CCATACTTTATACTCCCTCTGTTCACT 59.930 40.741 0.00 0.00 0.00 3.41
2517 3208 7.069578 TCCATACTTTATACTCCCTCTGTTCAC 59.930 40.741 0.00 0.00 0.00 3.18
2518 3209 7.130099 TCCATACTTTATACTCCCTCTGTTCA 58.870 38.462 0.00 0.00 0.00 3.18
2519 3210 7.598759 TCCATACTTTATACTCCCTCTGTTC 57.401 40.000 0.00 0.00 0.00 3.18
2520 3211 7.039644 CGATCCATACTTTATACTCCCTCTGTT 60.040 40.741 0.00 0.00 0.00 3.16
2521 3212 6.434652 CGATCCATACTTTATACTCCCTCTGT 59.565 42.308 0.00 0.00 0.00 3.41
2522 3213 6.659668 TCGATCCATACTTTATACTCCCTCTG 59.340 42.308 0.00 0.00 0.00 3.35
2523 3214 6.791371 TCGATCCATACTTTATACTCCCTCT 58.209 40.000 0.00 0.00 0.00 3.69
2524 3215 7.484975 CATCGATCCATACTTTATACTCCCTC 58.515 42.308 0.00 0.00 0.00 4.30
2525 3216 6.127310 GCATCGATCCATACTTTATACTCCCT 60.127 42.308 0.00 0.00 0.00 4.20
2526 3217 6.043411 GCATCGATCCATACTTTATACTCCC 58.957 44.000 0.00 0.00 0.00 4.30
2527 3218 6.754209 CAGCATCGATCCATACTTTATACTCC 59.246 42.308 0.00 0.00 0.00 3.85
2528 3219 7.539436 TCAGCATCGATCCATACTTTATACTC 58.461 38.462 0.00 0.00 0.00 2.59
2529 3220 7.468141 TCAGCATCGATCCATACTTTATACT 57.532 36.000 0.00 0.00 0.00 2.12
2530 3221 8.709386 AATCAGCATCGATCCATACTTTATAC 57.291 34.615 0.00 0.00 0.00 1.47
2531 3222 9.725019 AAAATCAGCATCGATCCATACTTTATA 57.275 29.630 0.00 0.00 0.00 0.98
2532 3223 8.627208 AAAATCAGCATCGATCCATACTTTAT 57.373 30.769 0.00 0.00 0.00 1.40
2731 3422 6.317789 ACTGTAGTGGAATGATTTGTTGTG 57.682 37.500 0.00 0.00 0.00 3.33
2921 3616 7.088589 AGTGCACCATTTATAATGAAGACAC 57.911 36.000 14.63 4.56 0.00 3.67
2922 3617 8.800370 TTAGTGCACCATTTATAATGAAGACA 57.200 30.769 14.63 0.00 0.00 3.41
2923 3618 8.893727 ACTTAGTGCACCATTTATAATGAAGAC 58.106 33.333 14.63 0.00 0.00 3.01
2924 3619 8.892723 CACTTAGTGCACCATTTATAATGAAGA 58.107 33.333 14.63 0.00 0.00 2.87
2925 3620 8.677300 ACACTTAGTGCACCATTTATAATGAAG 58.323 33.333 14.63 3.04 36.98 3.02
2926 3621 8.458052 CACACTTAGTGCACCATTTATAATGAA 58.542 33.333 14.63 0.00 42.15 2.57
2927 3622 7.984391 CACACTTAGTGCACCATTTATAATGA 58.016 34.615 14.63 0.00 42.15 2.57
2940 3635 8.600449 ATTCAGGGAGAAACACACTTAGTGCA 62.600 42.308 12.80 0.00 44.35 4.57
2941 3636 6.262024 ATTCAGGGAGAAACACACTTAGTGC 61.262 44.000 12.80 0.00 44.35 4.40
2942 3637 5.180117 CATTCAGGGAGAAACACACTTAGTG 59.820 44.000 11.21 11.21 45.24 2.74
2943 3638 5.163195 ACATTCAGGGAGAAACACACTTAGT 60.163 40.000 0.00 0.00 40.22 2.24
3053 3748 2.121506 TCTGGGAACAAGGGGCCT 60.122 61.111 0.84 0.00 42.06 5.19
3448 4143 4.170468 AGACACCATTCAGTCAAGGTTT 57.830 40.909 0.00 0.00 37.23 3.27
3563 4258 3.654414 CAGACGGTTATATGAGCCTTCC 58.346 50.000 0.00 0.00 0.00 3.46
3564 4259 3.060602 GCAGACGGTTATATGAGCCTTC 58.939 50.000 0.00 0.00 0.00 3.46
3615 4310 8.828688 TTAAGAAGATCAGATCTGCATGTATG 57.171 34.615 19.37 0.00 40.13 2.39
3639 4334 9.396022 AGTCCAATTCGATTACATTAGTTCATT 57.604 29.630 0.00 0.00 0.00 2.57
3640 4335 8.964476 AGTCCAATTCGATTACATTAGTTCAT 57.036 30.769 0.00 0.00 0.00 2.57
3641 4336 9.309516 GTAGTCCAATTCGATTACATTAGTTCA 57.690 33.333 1.70 0.00 0.00 3.18
3687 4382 5.165961 ACTTGCAGAGCTTTCTATGGTTA 57.834 39.130 0.00 0.00 32.39 2.85
3689 4384 3.710209 ACTTGCAGAGCTTTCTATGGT 57.290 42.857 0.00 0.00 32.39 3.55
3713 4408 0.239347 AAACTCATGAAGCACGCTGC 59.761 50.000 0.00 0.00 45.46 5.25
3714 4409 1.400629 CCAAACTCATGAAGCACGCTG 60.401 52.381 0.00 0.00 0.00 5.18
3715 4410 0.877071 CCAAACTCATGAAGCACGCT 59.123 50.000 0.00 0.00 0.00 5.07
3716 4411 0.593128 ACCAAACTCATGAAGCACGC 59.407 50.000 0.00 0.00 0.00 5.34
3717 4412 3.354089 AAACCAAACTCATGAAGCACG 57.646 42.857 0.00 0.00 0.00 5.34
3718 4413 4.681744 TCAAAACCAAACTCATGAAGCAC 58.318 39.130 0.00 0.00 0.00 4.40
3719 4414 4.998671 TCAAAACCAAACTCATGAAGCA 57.001 36.364 0.00 0.00 0.00 3.91
3726 4442 5.360714 AGCAGAAGATTCAAAACCAAACTCA 59.639 36.000 0.00 0.00 0.00 3.41
3796 4512 1.447489 AGGAGACGACGACGACGAT 60.447 57.895 25.15 13.34 42.66 3.73
3922 4638 0.105964 TGGTTGCCAGCTGGGTAAAA 60.106 50.000 33.46 9.56 43.32 1.52
3962 4678 4.153475 GCGTAAAGTTCACCTGATTGCTAA 59.847 41.667 0.00 0.00 0.00 3.09
3999 4715 9.862371 AGATTGCTACTCCTGAAAATATATACG 57.138 33.333 0.00 0.00 0.00 3.06
4075 4794 1.482182 TGATCCAGTCCGACATCTTGG 59.518 52.381 0.40 0.00 0.00 3.61
4090 4809 2.635427 GGGATTCTCTAGGGTGTGATCC 59.365 54.545 7.90 7.90 0.00 3.36
4156 4877 2.172930 ACTCAAGCCAGATCATCATGCT 59.827 45.455 0.00 0.00 0.00 3.79
4165 4886 9.118300 CTGATTTAAAGATAACTCAAGCCAGAT 57.882 33.333 0.00 0.00 32.36 2.90
4169 4890 8.401709 CCTTCTGATTTAAAGATAACTCAAGCC 58.598 37.037 0.00 0.00 32.36 4.35
4170 4891 9.167311 TCCTTCTGATTTAAAGATAACTCAAGC 57.833 33.333 0.00 0.00 32.36 4.01
4296 5017 4.860802 AACATCACATACCCTCCAATCA 57.139 40.909 0.00 0.00 0.00 2.57
4321 5044 1.327303 AGATCAGGAGAAGCGCCTAG 58.673 55.000 2.29 0.00 31.11 3.02
4639 5365 7.344095 TCTTAGTATTTCTTTACGGAGGGAG 57.656 40.000 0.00 0.00 0.00 4.30
4640 5366 6.183360 GCTCTTAGTATTTCTTTACGGAGGGA 60.183 42.308 0.00 0.00 0.00 4.20
4641 5367 5.984323 GCTCTTAGTATTTCTTTACGGAGGG 59.016 44.000 0.00 0.00 0.00 4.30
4642 5368 5.686397 CGCTCTTAGTATTTCTTTACGGAGG 59.314 44.000 0.00 0.00 0.00 4.30
4643 5369 6.264088 ACGCTCTTAGTATTTCTTTACGGAG 58.736 40.000 0.00 0.00 0.00 4.63
4644 5370 6.199937 ACGCTCTTAGTATTTCTTTACGGA 57.800 37.500 0.00 0.00 0.00 4.69
4645 5371 6.882458 AACGCTCTTAGTATTTCTTTACGG 57.118 37.500 0.00 0.00 0.00 4.02
4646 5372 9.282247 TCTAAACGCTCTTAGTATTTCTTTACG 57.718 33.333 2.66 0.00 31.86 3.18
4649 5375 9.871238 TGATCTAAACGCTCTTAGTATTTCTTT 57.129 29.630 0.00 0.00 31.86 2.52
4650 5376 9.303537 GTGATCTAAACGCTCTTAGTATTTCTT 57.696 33.333 0.00 0.00 31.86 2.52
4651 5377 8.688151 AGTGATCTAAACGCTCTTAGTATTTCT 58.312 33.333 0.00 0.00 31.86 2.52
4652 5378 8.859517 AGTGATCTAAACGCTCTTAGTATTTC 57.140 34.615 0.00 0.00 31.86 2.17
4653 5379 8.859517 GAGTGATCTAAACGCTCTTAGTATTT 57.140 34.615 0.00 0.00 40.40 1.40
4662 5388 5.557514 CGAGAGTAGAGTGATCTAAACGCTC 60.558 48.000 0.00 0.00 42.81 5.03
4663 5389 4.271533 CGAGAGTAGAGTGATCTAAACGCT 59.728 45.833 0.00 0.00 0.00 5.07
4664 5390 4.034279 ACGAGAGTAGAGTGATCTAAACGC 59.966 45.833 0.00 0.00 46.88 4.84
4665 5391 5.721876 ACGAGAGTAGAGTGATCTAAACG 57.278 43.478 0.00 0.00 46.88 3.60
4680 5406 8.948145 ATATAAGAGCGTTTATATCACGAGAGT 58.052 33.333 10.74 0.00 40.20 3.24
4681 5407 9.776158 AATATAAGAGCGTTTATATCACGAGAG 57.224 33.333 10.74 0.00 40.20 3.20
4684 5410 9.902196 TGAAATATAAGAGCGTTTATATCACGA 57.098 29.630 10.74 0.00 40.20 4.35
4693 5419 9.046296 CCTCTGTAATGAAATATAAGAGCGTTT 57.954 33.333 0.00 0.00 0.00 3.60
4694 5420 7.657761 CCCTCTGTAATGAAATATAAGAGCGTT 59.342 37.037 0.00 0.00 0.00 4.84
4695 5421 7.015292 TCCCTCTGTAATGAAATATAAGAGCGT 59.985 37.037 0.00 0.00 0.00 5.07
4696 5422 7.378966 TCCCTCTGTAATGAAATATAAGAGCG 58.621 38.462 0.00 0.00 0.00 5.03
4697 5423 8.371699 ACTCCCTCTGTAATGAAATATAAGAGC 58.628 37.037 0.00 0.00 0.00 4.09
4769 5497 8.955388 ACTTTGCAAATTTTGACCAAGTTTATT 58.045 25.926 13.23 0.00 0.00 1.40
4785 5513 8.770438 TTTCTGACTTGTTAAACTTTGCAAAT 57.230 26.923 13.23 0.07 0.00 2.32
4807 5535 7.115805 TCCATAATGTCGTGCGTATAGATTTTC 59.884 37.037 0.00 0.00 0.00 2.29
4823 5551 2.434702 ACTCCCTCCGTTCCATAATGTC 59.565 50.000 0.00 0.00 0.00 3.06
4832 5560 3.243975 TGAACAAAGTACTCCCTCCGTTC 60.244 47.826 0.00 4.28 33.74 3.95
4957 5686 4.267690 CCATACATAGCACACAAGTACACG 59.732 45.833 0.00 0.00 0.00 4.49
4965 5694 3.625649 TTCTGCCATACATAGCACACA 57.374 42.857 0.00 0.00 34.68 3.72
5035 5764 4.703897 TGTTGAGGTACTTCAAGAGTTGG 58.296 43.478 19.67 0.00 41.55 3.77
5042 5771 4.569943 GAGATGCTGTTGAGGTACTTCAA 58.430 43.478 15.78 15.78 41.55 2.69
5268 6000 1.748493 CCCCCAATTTACATGACCACG 59.252 52.381 0.00 0.00 0.00 4.94
5367 6100 4.002506 ACCGCACGCCATGAGACA 62.003 61.111 0.00 0.00 0.00 3.41
5391 6124 7.117236 CAGCAAAGATTACACGAGTTTAACCTA 59.883 37.037 0.00 0.00 0.00 3.08
5392 6125 5.995897 AGCAAAGATTACACGAGTTTAACCT 59.004 36.000 0.00 0.00 0.00 3.50
5443 6176 4.459089 GGCAGGACCGACAGAGGC 62.459 72.222 0.00 0.00 33.69 4.70
5465 6198 2.311080 TTAGAGAGACAGAGCGCGCG 62.311 60.000 28.44 28.44 0.00 6.86
5494 6227 3.322466 CGACTCAAGGGGGCAGGT 61.322 66.667 0.00 0.00 0.00 4.00
5547 6295 6.347969 CGCTGCCTATACTAGTACATCGTTTA 60.348 42.308 4.31 0.00 0.00 2.01
5611 6374 1.290955 CGGGCGTACTGGAAAGTGA 59.709 57.895 0.00 0.00 0.00 3.41
5654 6417 0.529378 CTGCTGTTGGGAATTCTGCC 59.471 55.000 5.23 0.00 0.00 4.85
5655 6418 0.108945 GCTGCTGTTGGGAATTCTGC 60.109 55.000 5.23 2.03 0.00 4.26
5656 6419 1.201647 CTGCTGCTGTTGGGAATTCTG 59.798 52.381 5.23 0.00 0.00 3.02
5928 6700 2.129555 GACGGGATGGGATGGGATGG 62.130 65.000 0.00 0.00 0.00 3.51
5941 6713 0.475475 TTATAGAGCGAGGGACGGGA 59.525 55.000 0.00 0.00 42.83 5.14
5943 6715 1.000496 GGTTTATAGAGCGAGGGACGG 60.000 57.143 0.00 0.00 42.83 4.79
5944 6716 1.679680 TGGTTTATAGAGCGAGGGACG 59.320 52.381 0.00 0.00 45.66 4.79
5945 6717 2.546162 GCTGGTTTATAGAGCGAGGGAC 60.546 54.545 0.00 0.00 0.00 4.46
5946 6718 1.687123 GCTGGTTTATAGAGCGAGGGA 59.313 52.381 0.00 0.00 0.00 4.20
5947 6719 2.156343 GCTGGTTTATAGAGCGAGGG 57.844 55.000 0.00 0.00 0.00 4.30
5967 6741 0.163146 GTAAAACGGCGTGCTCTGTC 59.837 55.000 15.70 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.