Multiple sequence alignment - TraesCS3D01G119700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G119700 chr3D 100.000 6712 0 0 1 6712 75151676 75144965 0.000000e+00 12395.0
1 TraesCS3D01G119700 chr3D 98.246 513 6 2 1 512 418219574 418219064 0.000000e+00 894.0
2 TraesCS3D01G119700 chr3D 89.623 106 11 0 1952 2057 395639583 395639478 1.170000e-27 135.0
3 TraesCS3D01G119700 chr3D 93.827 81 5 0 3633 3713 326697040 326696960 9.140000e-24 122.0
4 TraesCS3D01G119700 chr3A 95.770 3381 122 17 3336 6712 88550914 88547551 0.000000e+00 5432.0
5 TraesCS3D01G119700 chr3A 87.730 489 30 7 921 1394 88551520 88551047 1.650000e-150 544.0
6 TraesCS3D01G119700 chr3A 98.551 69 1 0 3341 3409 88550920 88550988 9.140000e-24 122.0
7 TraesCS3D01G119700 chr3B 94.702 2095 73 19 3717 5785 120623372 120621290 0.000000e+00 3219.0
8 TraesCS3D01G119700 chr3B 88.055 1239 95 17 3421 4644 121468353 121467153 0.000000e+00 1419.0
9 TraesCS3D01G119700 chr3B 91.918 928 49 10 2713 3636 120624277 120623372 0.000000e+00 1275.0
10 TraesCS3D01G119700 chr3B 92.575 862 45 11 5855 6712 120621297 120620451 0.000000e+00 1219.0
11 TraesCS3D01G119700 chr3B 89.246 716 43 14 2716 3428 121481586 121480902 0.000000e+00 865.0
12 TraesCS3D01G119700 chr3B 90.036 562 38 10 1393 1949 120624818 120624270 0.000000e+00 712.0
13 TraesCS3D01G119700 chr3B 91.142 429 33 2 1525 1949 121482009 121481582 1.620000e-160 577.0
14 TraesCS3D01G119700 chr3B 93.359 256 9 3 1140 1394 121482351 121482103 8.220000e-99 372.0
15 TraesCS3D01G119700 chr3B 88.934 244 19 4 921 1156 121482612 121482369 1.830000e-75 294.0
16 TraesCS3D01G119700 chr3B 87.665 227 20 4 921 1139 120627729 120627503 2.400000e-64 257.0
17 TraesCS3D01G119700 chr3B 87.665 227 20 4 921 1139 120654295 120654069 2.400000e-64 257.0
18 TraesCS3D01G119700 chr3B 84.411 263 27 2 1140 1394 120625098 120624842 5.200000e-61 246.0
19 TraesCS3D01G119700 chr3B 91.803 61 5 0 1393 1453 121482075 121482015 1.200000e-12 86.1
20 TraesCS3D01G119700 chr1D 98.820 763 9 0 1950 2712 57323887 57323125 0.000000e+00 1360.0
21 TraesCS3D01G119700 chr1D 96.750 523 10 3 1 518 435732570 435733090 0.000000e+00 865.0
22 TraesCS3D01G119700 chr1D 93.069 404 24 3 518 919 299758850 299758449 7.500000e-164 588.0
23 TraesCS3D01G119700 chr4D 97.389 766 10 3 1947 2712 6895172 6895927 0.000000e+00 1295.0
24 TraesCS3D01G119700 chr4D 95.274 402 17 2 518 918 42242206 42242606 2.640000e-178 636.0
25 TraesCS3D01G119700 chr4D 73.246 456 98 18 5087 5528 497647685 497648130 1.950000e-30 145.0
26 TraesCS3D01G119700 chr4D 72.687 454 91 25 5093 5528 497669062 497668624 3.290000e-23 121.0
27 TraesCS3D01G119700 chr7D 98.462 520 7 1 1 520 1946677 1946159 0.000000e+00 915.0
28 TraesCS3D01G119700 chr7D 98.263 518 6 2 1 518 10040012 10039498 0.000000e+00 904.0
29 TraesCS3D01G119700 chr7D 97.710 524 7 1 1 519 394327342 394327865 0.000000e+00 896.0
30 TraesCS3D01G119700 chr7D 97.519 524 7 5 1 520 563549853 563550374 0.000000e+00 891.0
31 TraesCS3D01G119700 chr7D 95.174 518 20 2 1 518 16671064 16671576 0.000000e+00 813.0
32 TraesCS3D01G119700 chr7D 93.842 406 23 2 518 922 210382993 210382589 1.600000e-170 610.0
33 TraesCS3D01G119700 chr7D 92.222 90 6 1 3630 3719 131468364 131468452 7.070000e-25 126.0
34 TraesCS3D01G119700 chr5D 97.710 524 9 2 1 523 170398453 170398974 0.000000e+00 898.0
35 TraesCS3D01G119700 chr5D 97.876 518 8 2 1 518 264623913 264623399 0.000000e+00 893.0
36 TraesCS3D01G119700 chr5D 95.765 425 6 2 1949 2372 328000321 327999908 0.000000e+00 675.0
37 TraesCS3D01G119700 chr5D 98.534 341 5 0 2375 2715 327998110 327997770 2.680000e-168 603.0
38 TraesCS3D01G119700 chr5D 76.216 370 64 19 5356 5709 384782733 384782372 2.490000e-39 174.0
39 TraesCS3D01G119700 chr5D 82.895 76 11 2 5632 5706 406974003 406974077 4.340000e-07 67.6
40 TraesCS3D01G119700 chr6D 95.522 402 18 0 518 919 417527984 417527583 1.580000e-180 643.0
41 TraesCS3D01G119700 chr6D 89.423 104 9 2 3623 3724 122992203 122992100 5.460000e-26 130.0
42 TraesCS3D01G119700 chr6D 97.436 39 1 0 2292 2330 36251439 36251401 4.340000e-07 67.6
43 TraesCS3D01G119700 chr1B 95.533 403 16 2 518 919 45357375 45357776 1.580000e-180 643.0
44 TraesCS3D01G119700 chr6B 94.776 402 19 2 518 918 459569822 459570222 5.720000e-175 625.0
45 TraesCS3D01G119700 chr6B 91.781 73 4 1 2389 2459 10120452 10120524 4.280000e-17 100.0
46 TraesCS3D01G119700 chr6B 92.647 68 2 3 2297 2364 10120397 10120461 1.990000e-15 95.3
47 TraesCS3D01G119700 chr5B 94.527 402 20 2 518 918 22071833 22071433 2.660000e-173 619.0
48 TraesCS3D01G119700 chr5B 94.059 404 19 4 518 918 59671852 59672253 5.760000e-170 608.0
49 TraesCS3D01G119700 chr5B 87.736 106 13 0 5141 5246 461639910 461639805 2.540000e-24 124.0
50 TraesCS3D01G119700 chr5B 86.792 106 14 0 5141 5246 461861887 461861782 1.180000e-22 119.0
51 TraesCS3D01G119700 chr5B 97.222 36 1 0 5671 5706 488115405 488115370 2.020000e-05 62.1
52 TraesCS3D01G119700 chr1A 94.527 402 18 4 518 918 329180924 329180526 9.560000e-173 617.0
53 TraesCS3D01G119700 chr1A 93.902 82 5 0 3632 3713 417400704 417400623 2.540000e-24 124.0
54 TraesCS3D01G119700 chr1A 90.426 94 9 0 3632 3725 425264113 425264020 2.540000e-24 124.0
55 TraesCS3D01G119700 chr2B 90.598 117 8 3 1942 2057 75833747 75833633 1.170000e-32 152.0
56 TraesCS3D01G119700 chr2B 86.290 124 17 0 1954 2077 799456642 799456519 1.170000e-27 135.0
57 TraesCS3D01G119700 chr2B 93.333 45 3 0 2286 2330 219572392 219572436 4.340000e-07 67.6
58 TraesCS3D01G119700 chr5A 73.465 456 97 18 5087 5528 677950660 677951105 4.190000e-32 150.0
59 TraesCS3D01G119700 chr5A 91.579 95 8 0 5152 5246 485602691 485602597 1.520000e-26 132.0
60 TraesCS3D01G119700 chr5A 83.077 130 18 4 1950 2077 649807983 649808110 1.530000e-21 115.0
61 TraesCS3D01G119700 chr5A 97.222 36 1 0 5671 5706 512620813 512620778 2.020000e-05 62.1
62 TraesCS3D01G119700 chr2D 88.288 111 10 2 1950 2058 188885337 188885446 5.460000e-26 130.0
63 TraesCS3D01G119700 chrUn 86.607 112 15 0 1949 2060 86351298 86351187 2.540000e-24 124.0
64 TraesCS3D01G119700 chr6A 88.542 96 11 0 3627 3722 573411122 573411217 4.250000e-22 117.0
65 TraesCS3D01G119700 chr4A 89.362 94 9 1 3633 3725 565436207 565436114 4.250000e-22 117.0
66 TraesCS3D01G119700 chr4A 94.340 53 3 0 2652 2704 433713273 433713325 1.550000e-11 82.4
67 TraesCS3D01G119700 chr4A 91.525 59 5 0 2652 2710 433733313 433733371 1.550000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G119700 chr3D 75144965 75151676 6711 True 12395.000000 12395 100.000000 1 6712 1 chr3D.!!$R1 6711
1 TraesCS3D01G119700 chr3D 418219064 418219574 510 True 894.000000 894 98.246000 1 512 1 chr3D.!!$R4 511
2 TraesCS3D01G119700 chr3A 88547551 88551520 3969 True 2988.000000 5432 91.750000 921 6712 2 chr3A.!!$R1 5791
3 TraesCS3D01G119700 chr3B 121467153 121468353 1200 True 1419.000000 1419 88.055000 3421 4644 1 chr3B.!!$R2 1223
4 TraesCS3D01G119700 chr3B 120620451 120627729 7278 True 1154.666667 3219 90.217833 921 6712 6 chr3B.!!$R3 5791
5 TraesCS3D01G119700 chr3B 121480902 121482612 1710 True 438.820000 865 90.896800 921 3428 5 chr3B.!!$R4 2507
6 TraesCS3D01G119700 chr1D 57323125 57323887 762 True 1360.000000 1360 98.820000 1950 2712 1 chr1D.!!$R1 762
7 TraesCS3D01G119700 chr1D 435732570 435733090 520 False 865.000000 865 96.750000 1 518 1 chr1D.!!$F1 517
8 TraesCS3D01G119700 chr4D 6895172 6895927 755 False 1295.000000 1295 97.389000 1947 2712 1 chr4D.!!$F1 765
9 TraesCS3D01G119700 chr7D 1946159 1946677 518 True 915.000000 915 98.462000 1 520 1 chr7D.!!$R1 519
10 TraesCS3D01G119700 chr7D 10039498 10040012 514 True 904.000000 904 98.263000 1 518 1 chr7D.!!$R2 517
11 TraesCS3D01G119700 chr7D 394327342 394327865 523 False 896.000000 896 97.710000 1 519 1 chr7D.!!$F3 518
12 TraesCS3D01G119700 chr7D 563549853 563550374 521 False 891.000000 891 97.519000 1 520 1 chr7D.!!$F4 519
13 TraesCS3D01G119700 chr7D 16671064 16671576 512 False 813.000000 813 95.174000 1 518 1 chr7D.!!$F1 517
14 TraesCS3D01G119700 chr5D 170398453 170398974 521 False 898.000000 898 97.710000 1 523 1 chr5D.!!$F1 522
15 TraesCS3D01G119700 chr5D 264623399 264623913 514 True 893.000000 893 97.876000 1 518 1 chr5D.!!$R1 517
16 TraesCS3D01G119700 chr5D 327997770 328000321 2551 True 639.000000 675 97.149500 1949 2715 2 chr5D.!!$R3 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 559 0.103572 GCATGGCAAAAGATCCGCAT 59.896 50.000 0.00 0.00 0.00 4.73 F
846 864 0.179067 TCGGAACTCCAAAACGCACT 60.179 50.000 0.00 0.00 35.14 4.40 F
1472 3948 0.321671 CAAGATGTCAGGTCCGGTGT 59.678 55.000 0.00 0.00 0.00 4.16 F
1807 4292 0.686224 TGCTTCATTGGCCAAAAGGG 59.314 50.000 24.71 14.16 40.85 3.95 F
2922 7206 0.109689 CTCGTCCGGCCGATAATCTC 60.110 60.000 30.73 7.35 36.08 2.75 F
2924 7208 0.243907 CGTCCGGCCGATAATCTCAT 59.756 55.000 30.73 0.00 0.00 2.90 F
3189 7473 1.339610 GACTGCGCCATGATCTAGAGT 59.660 52.381 4.18 0.00 0.00 3.24 F
4570 8890 0.529555 GGGATCTTCGTCTCAGCAGC 60.530 60.000 0.00 0.00 0.00 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 4080 0.841961 CATCAATCTGCTCCCTCCCA 59.158 55.0 0.00 0.00 0.00 4.37 R
2765 7047 0.112995 AATGTGTCATGTGTGGCCCT 59.887 50.0 0.00 0.00 0.00 5.19 R
2766 7048 0.968405 AAATGTGTCATGTGTGGCCC 59.032 50.0 0.00 0.00 0.00 5.80 R
3171 7455 3.509740 CATACTCTAGATCATGGCGCAG 58.490 50.0 10.83 0.00 0.00 5.18 R
4373 8693 0.035881 TCAAGCCTGAGTGCCTTCAG 59.964 55.0 7.41 7.41 43.35 3.02 R
4570 8890 0.391661 CCATGGGACGGAAGACACAG 60.392 60.0 2.85 0.00 43.43 3.66 R
5084 9407 0.890683 GTGGAGGAATTTGCCAGGTG 59.109 55.0 0.00 0.00 31.18 4.00 R
6313 10649 0.246910 GTCTCCCCCGTTCAGTTCTC 59.753 60.0 0.00 0.00 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 1.541147 TGTGTGGCTATTTGCAGCTTC 59.459 47.619 0.00 0.00 45.15 3.86
528 546 4.392754 CCTTTTTCAGTAAAATGGCATGGC 59.607 41.667 13.29 13.29 40.78 4.40
529 547 4.613925 TTTTCAGTAAAATGGCATGGCA 57.386 36.364 25.52 25.52 29.59 4.92
530 548 4.613925 TTTCAGTAAAATGGCATGGCAA 57.386 36.364 27.04 6.67 0.00 4.52
531 549 4.613925 TTCAGTAAAATGGCATGGCAAA 57.386 36.364 27.04 10.32 0.00 3.68
532 550 4.613925 TCAGTAAAATGGCATGGCAAAA 57.386 36.364 27.04 8.97 0.00 2.44
533 551 4.567971 TCAGTAAAATGGCATGGCAAAAG 58.432 39.130 27.04 11.68 0.00 2.27
534 552 4.282957 TCAGTAAAATGGCATGGCAAAAGA 59.717 37.500 27.04 13.68 0.00 2.52
535 553 5.046448 TCAGTAAAATGGCATGGCAAAAGAT 60.046 36.000 27.04 12.94 0.00 2.40
536 554 5.292589 CAGTAAAATGGCATGGCAAAAGATC 59.707 40.000 27.04 14.39 0.00 2.75
537 555 2.994186 AATGGCATGGCAAAAGATCC 57.006 45.000 27.04 0.00 0.00 3.36
538 556 0.748450 ATGGCATGGCAAAAGATCCG 59.252 50.000 27.04 0.00 0.00 4.18
539 557 1.227060 GGCATGGCAAAAGATCCGC 60.227 57.895 15.47 0.00 0.00 5.54
540 558 1.512230 GCATGGCAAAAGATCCGCA 59.488 52.632 0.00 0.00 0.00 5.69
541 559 0.103572 GCATGGCAAAAGATCCGCAT 59.896 50.000 0.00 0.00 0.00 4.73
542 560 1.337703 GCATGGCAAAAGATCCGCATA 59.662 47.619 0.00 0.00 0.00 3.14
543 561 2.606308 GCATGGCAAAAGATCCGCATAG 60.606 50.000 0.00 0.00 0.00 2.23
544 562 2.708216 TGGCAAAAGATCCGCATAGA 57.292 45.000 0.00 0.00 0.00 1.98
545 563 3.213206 TGGCAAAAGATCCGCATAGAT 57.787 42.857 0.00 0.00 0.00 1.98
546 564 3.554934 TGGCAAAAGATCCGCATAGATT 58.445 40.909 0.00 0.00 0.00 2.40
547 565 3.565482 TGGCAAAAGATCCGCATAGATTC 59.435 43.478 0.00 0.00 0.00 2.52
548 566 3.565482 GGCAAAAGATCCGCATAGATTCA 59.435 43.478 0.00 0.00 0.00 2.57
549 567 4.217118 GGCAAAAGATCCGCATAGATTCAT 59.783 41.667 0.00 0.00 0.00 2.57
550 568 5.278660 GGCAAAAGATCCGCATAGATTCATT 60.279 40.000 0.00 0.00 0.00 2.57
551 569 6.072508 GGCAAAAGATCCGCATAGATTCATTA 60.073 38.462 0.00 0.00 0.00 1.90
552 570 7.362401 GGCAAAAGATCCGCATAGATTCATTAT 60.362 37.037 0.00 0.00 0.00 1.28
553 571 8.025445 GCAAAAGATCCGCATAGATTCATTATT 58.975 33.333 0.00 0.00 0.00 1.40
554 572 9.903682 CAAAAGATCCGCATAGATTCATTATTT 57.096 29.630 0.00 0.00 0.00 1.40
555 573 9.903682 AAAAGATCCGCATAGATTCATTATTTG 57.096 29.630 0.00 0.00 0.00 2.32
556 574 8.627208 AAGATCCGCATAGATTCATTATTTGT 57.373 30.769 0.00 0.00 0.00 2.83
557 575 8.627208 AGATCCGCATAGATTCATTATTTGTT 57.373 30.769 0.00 0.00 0.00 2.83
558 576 9.071276 AGATCCGCATAGATTCATTATTTGTTT 57.929 29.630 0.00 0.00 0.00 2.83
559 577 9.121517 GATCCGCATAGATTCATTATTTGTTTG 57.878 33.333 0.00 0.00 0.00 2.93
560 578 7.995289 TCCGCATAGATTCATTATTTGTTTGT 58.005 30.769 0.00 0.00 0.00 2.83
561 579 8.465999 TCCGCATAGATTCATTATTTGTTTGTT 58.534 29.630 0.00 0.00 0.00 2.83
562 580 8.745837 CCGCATAGATTCATTATTTGTTTGTTC 58.254 33.333 0.00 0.00 0.00 3.18
563 581 9.288124 CGCATAGATTCATTATTTGTTTGTTCA 57.712 29.630 0.00 0.00 0.00 3.18
607 625 8.125728 ACAAAACTATGTTGTATTTGTGTTGC 57.874 30.769 1.79 0.00 41.27 4.17
608 626 7.761704 ACAAAACTATGTTGTATTTGTGTTGCA 59.238 29.630 1.79 0.00 41.27 4.08
609 627 8.763356 CAAAACTATGTTGTATTTGTGTTGCAT 58.237 29.630 0.00 0.00 0.00 3.96
610 628 8.885494 AAACTATGTTGTATTTGTGTTGCATT 57.115 26.923 0.00 0.00 0.00 3.56
611 629 7.872163 ACTATGTTGTATTTGTGTTGCATTG 57.128 32.000 0.00 0.00 0.00 2.82
612 630 5.594724 ATGTTGTATTTGTGTTGCATTGC 57.405 34.783 0.46 0.46 0.00 3.56
613 631 4.436332 TGTTGTATTTGTGTTGCATTGCA 58.564 34.783 7.38 7.38 36.47 4.08
614 632 5.055144 TGTTGTATTTGTGTTGCATTGCAT 58.945 33.333 12.95 0.00 38.76 3.96
615 633 5.177142 TGTTGTATTTGTGTTGCATTGCATC 59.823 36.000 12.95 12.34 38.76 3.91
616 634 5.136816 TGTATTTGTGTTGCATTGCATCT 57.863 34.783 12.95 0.00 38.76 2.90
617 635 5.162794 TGTATTTGTGTTGCATTGCATCTC 58.837 37.500 12.95 12.72 38.76 2.75
618 636 2.728690 TTGTGTTGCATTGCATCTCC 57.271 45.000 12.95 7.44 38.76 3.71
619 637 1.913778 TGTGTTGCATTGCATCTCCT 58.086 45.000 12.95 0.00 38.76 3.69
620 638 1.542472 TGTGTTGCATTGCATCTCCTG 59.458 47.619 12.95 0.00 38.76 3.86
621 639 1.135199 GTGTTGCATTGCATCTCCTGG 60.135 52.381 12.95 0.00 38.76 4.45
622 640 1.272037 TGTTGCATTGCATCTCCTGGA 60.272 47.619 12.95 0.00 38.76 3.86
623 641 2.029623 GTTGCATTGCATCTCCTGGAT 58.970 47.619 12.95 0.00 38.76 3.41
624 642 1.977056 TGCATTGCATCTCCTGGATC 58.023 50.000 7.38 0.00 31.71 3.36
625 643 1.493446 TGCATTGCATCTCCTGGATCT 59.507 47.619 7.38 0.00 31.71 2.75
626 644 1.880675 GCATTGCATCTCCTGGATCTG 59.119 52.381 3.15 0.00 31.27 2.90
627 645 2.486727 GCATTGCATCTCCTGGATCTGA 60.487 50.000 3.15 0.00 31.27 3.27
628 646 3.816994 CATTGCATCTCCTGGATCTGAA 58.183 45.455 0.00 0.00 31.27 3.02
629 647 3.555527 TTGCATCTCCTGGATCTGAAG 57.444 47.619 0.00 0.00 31.27 3.02
630 648 2.755686 TGCATCTCCTGGATCTGAAGA 58.244 47.619 0.00 0.00 31.27 2.87
631 649 3.109928 TGCATCTCCTGGATCTGAAGAA 58.890 45.455 0.00 0.00 31.27 2.52
632 650 3.118482 TGCATCTCCTGGATCTGAAGAAC 60.118 47.826 0.00 0.00 31.27 3.01
633 651 3.134442 GCATCTCCTGGATCTGAAGAACT 59.866 47.826 0.00 0.00 31.27 3.01
634 652 4.343526 GCATCTCCTGGATCTGAAGAACTA 59.656 45.833 0.00 0.00 31.27 2.24
635 653 5.011943 GCATCTCCTGGATCTGAAGAACTAT 59.988 44.000 0.00 0.00 31.27 2.12
636 654 6.457355 CATCTCCTGGATCTGAAGAACTATG 58.543 44.000 0.00 0.00 31.27 2.23
637 655 5.523588 TCTCCTGGATCTGAAGAACTATGT 58.476 41.667 0.00 0.00 0.00 2.29
638 656 6.673583 TCTCCTGGATCTGAAGAACTATGTA 58.326 40.000 0.00 0.00 0.00 2.29
639 657 7.126061 TCTCCTGGATCTGAAGAACTATGTAA 58.874 38.462 0.00 0.00 0.00 2.41
640 658 7.786943 TCTCCTGGATCTGAAGAACTATGTAAT 59.213 37.037 0.00 0.00 0.00 1.89
641 659 9.083422 CTCCTGGATCTGAAGAACTATGTAATA 57.917 37.037 0.00 0.00 0.00 0.98
642 660 9.434275 TCCTGGATCTGAAGAACTATGTAATAA 57.566 33.333 0.00 0.00 0.00 1.40
693 711 9.593134 TTATGTTATTTTCAAATATTTGCGGCT 57.407 25.926 21.15 9.87 38.05 5.52
694 712 7.288317 TGTTATTTTCAAATATTTGCGGCTG 57.712 32.000 21.15 0.00 38.05 4.85
695 713 6.870965 TGTTATTTTCAAATATTTGCGGCTGT 59.129 30.769 21.15 8.86 38.05 4.40
696 714 8.029522 TGTTATTTTCAAATATTTGCGGCTGTA 58.970 29.630 21.15 8.05 38.05 2.74
697 715 6.885735 ATTTTCAAATATTTGCGGCTGTAC 57.114 33.333 21.15 0.00 38.05 2.90
698 716 5.378292 TTTCAAATATTTGCGGCTGTACA 57.622 34.783 21.15 0.00 38.05 2.90
699 717 4.614555 TCAAATATTTGCGGCTGTACAG 57.385 40.909 21.15 18.93 38.05 2.74
700 718 4.006989 TCAAATATTTGCGGCTGTACAGT 58.993 39.130 23.44 5.00 38.05 3.55
701 719 4.097714 CAAATATTTGCGGCTGTACAGTG 58.902 43.478 23.44 16.97 0.00 3.66
702 720 1.732941 TATTTGCGGCTGTACAGTGG 58.267 50.000 23.44 16.11 0.00 4.00
703 721 1.586154 ATTTGCGGCTGTACAGTGGC 61.586 55.000 23.44 24.03 0.00 5.01
704 722 2.674563 TTTGCGGCTGTACAGTGGCT 62.675 55.000 28.30 0.00 32.57 4.75
705 723 3.121030 GCGGCTGTACAGTGGCTG 61.121 66.667 23.44 16.08 37.52 4.85
706 724 2.434884 CGGCTGTACAGTGGCTGG 60.435 66.667 23.44 4.16 35.51 4.85
707 725 2.942796 CGGCTGTACAGTGGCTGGA 61.943 63.158 23.44 0.00 35.51 3.86
708 726 1.376037 GGCTGTACAGTGGCTGGAC 60.376 63.158 23.44 4.64 44.96 4.02
719 737 3.426568 GCTGGACAGCGGCTGAAC 61.427 66.667 34.70 24.86 45.29 3.18
720 738 2.031012 CTGGACAGCGGCTGAACA 59.969 61.111 34.70 27.54 35.18 3.18
721 739 2.031012 TGGACAGCGGCTGAACAG 59.969 61.111 34.70 9.91 35.18 3.16
749 767 4.362476 GCTGCTGGCCGGTTTTGG 62.362 66.667 14.55 0.41 34.27 3.28
750 768 2.597217 CTGCTGGCCGGTTTTGGA 60.597 61.111 14.55 0.00 0.00 3.53
751 769 2.909965 TGCTGGCCGGTTTTGGAC 60.910 61.111 14.55 0.00 37.64 4.02
752 770 3.680786 GCTGGCCGGTTTTGGACC 61.681 66.667 14.55 0.00 45.55 4.46
767 785 1.834188 GGACCATGAATTTGGACCGT 58.166 50.000 3.10 0.00 40.81 4.83
768 786 1.743394 GGACCATGAATTTGGACCGTC 59.257 52.381 3.10 0.00 40.81 4.79
769 787 2.618045 GGACCATGAATTTGGACCGTCT 60.618 50.000 3.10 0.00 40.81 4.18
770 788 3.370103 GGACCATGAATTTGGACCGTCTA 60.370 47.826 3.10 0.00 40.81 2.59
771 789 4.451900 GACCATGAATTTGGACCGTCTAT 58.548 43.478 3.10 0.00 39.25 1.98
772 790 4.855340 ACCATGAATTTGGACCGTCTATT 58.145 39.130 3.10 0.00 39.25 1.73
773 791 4.640201 ACCATGAATTTGGACCGTCTATTG 59.360 41.667 3.10 0.00 39.25 1.90
774 792 4.036734 CCATGAATTTGGACCGTCTATTGG 59.963 45.833 0.00 0.00 39.25 3.16
775 793 4.561500 TGAATTTGGACCGTCTATTGGA 57.438 40.909 0.00 0.00 0.00 3.53
776 794 4.513442 TGAATTTGGACCGTCTATTGGAG 58.487 43.478 0.00 0.00 0.00 3.86
777 795 4.019681 TGAATTTGGACCGTCTATTGGAGT 60.020 41.667 0.00 0.00 0.00 3.85
778 796 4.569719 ATTTGGACCGTCTATTGGAGTT 57.430 40.909 0.00 0.00 0.00 3.01
779 797 3.328382 TTGGACCGTCTATTGGAGTTG 57.672 47.619 0.00 0.00 0.00 3.16
780 798 1.066430 TGGACCGTCTATTGGAGTTGC 60.066 52.381 0.00 0.00 0.00 4.17
781 799 1.207329 GGACCGTCTATTGGAGTTGCT 59.793 52.381 0.00 0.00 0.00 3.91
782 800 2.541556 GACCGTCTATTGGAGTTGCTC 58.458 52.381 0.00 0.00 0.00 4.26
783 801 1.899814 ACCGTCTATTGGAGTTGCTCA 59.100 47.619 0.00 0.00 31.08 4.26
784 802 2.501723 ACCGTCTATTGGAGTTGCTCAT 59.498 45.455 0.00 0.00 31.08 2.90
785 803 3.055094 ACCGTCTATTGGAGTTGCTCATT 60.055 43.478 0.00 0.00 31.08 2.57
786 804 3.941483 CCGTCTATTGGAGTTGCTCATTT 59.059 43.478 0.00 0.00 31.08 2.32
787 805 4.201851 CCGTCTATTGGAGTTGCTCATTTG 60.202 45.833 0.00 0.00 31.08 2.32
788 806 4.201851 CGTCTATTGGAGTTGCTCATTTGG 60.202 45.833 0.00 0.00 31.08 3.28
789 807 4.943705 GTCTATTGGAGTTGCTCATTTGGA 59.056 41.667 0.00 0.00 31.08 3.53
790 808 4.943705 TCTATTGGAGTTGCTCATTTGGAC 59.056 41.667 0.00 0.00 31.08 4.02
791 809 1.909700 TGGAGTTGCTCATTTGGACC 58.090 50.000 0.00 0.00 31.08 4.46
792 810 1.144708 TGGAGTTGCTCATTTGGACCA 59.855 47.619 0.00 0.00 31.08 4.02
793 811 2.225091 TGGAGTTGCTCATTTGGACCAT 60.225 45.455 0.00 0.00 31.08 3.55
794 812 2.165030 GGAGTTGCTCATTTGGACCATG 59.835 50.000 0.00 0.00 31.08 3.66
795 813 3.084039 GAGTTGCTCATTTGGACCATGA 58.916 45.455 0.00 0.00 0.00 3.07
796 814 3.499338 AGTTGCTCATTTGGACCATGAA 58.501 40.909 0.00 0.00 30.12 2.57
797 815 4.091549 AGTTGCTCATTTGGACCATGAAT 58.908 39.130 0.00 0.00 30.12 2.57
798 816 4.529377 AGTTGCTCATTTGGACCATGAATT 59.471 37.500 0.00 0.00 30.12 2.17
799 817 5.012354 AGTTGCTCATTTGGACCATGAATTT 59.988 36.000 0.00 0.00 30.12 1.82
800 818 4.823157 TGCTCATTTGGACCATGAATTTG 58.177 39.130 0.00 0.00 30.12 2.32
801 819 4.186159 GCTCATTTGGACCATGAATTTGG 58.814 43.478 0.00 0.00 42.82 3.28
802 820 4.081531 GCTCATTTGGACCATGAATTTGGA 60.082 41.667 3.10 0.00 39.25 3.53
803 821 5.395990 GCTCATTTGGACCATGAATTTGGAT 60.396 40.000 3.10 0.00 39.25 3.41
804 822 6.224665 TCATTTGGACCATGAATTTGGATC 57.775 37.500 3.10 0.00 39.25 3.36
805 823 5.720520 TCATTTGGACCATGAATTTGGATCA 59.279 36.000 3.10 0.00 39.25 2.92
806 824 6.384595 TCATTTGGACCATGAATTTGGATCAT 59.615 34.615 3.10 0.00 39.25 2.45
807 825 5.857471 TTGGACCATGAATTTGGATCATC 57.143 39.130 3.10 0.00 39.25 2.92
808 826 5.133383 TGGACCATGAATTTGGATCATCT 57.867 39.130 3.10 0.00 39.25 2.90
809 827 4.891168 TGGACCATGAATTTGGATCATCTG 59.109 41.667 3.10 0.00 39.25 2.90
810 828 4.891756 GGACCATGAATTTGGATCATCTGT 59.108 41.667 3.10 0.00 39.25 3.41
811 829 5.361857 GGACCATGAATTTGGATCATCTGTT 59.638 40.000 3.10 0.00 39.25 3.16
812 830 6.216801 ACCATGAATTTGGATCATCTGTTG 57.783 37.500 3.10 0.00 39.25 3.33
813 831 5.128171 ACCATGAATTTGGATCATCTGTTGG 59.872 40.000 3.10 0.00 39.25 3.77
814 832 5.361571 CCATGAATTTGGATCATCTGTTGGA 59.638 40.000 0.00 0.00 39.25 3.53
815 833 6.461092 CCATGAATTTGGATCATCTGTTGGAG 60.461 42.308 0.00 0.00 39.25 3.86
816 834 5.573219 TGAATTTGGATCATCTGTTGGAGT 58.427 37.500 0.00 0.00 0.00 3.85
817 835 6.012113 TGAATTTGGATCATCTGTTGGAGTT 58.988 36.000 0.00 0.00 0.00 3.01
818 836 5.909621 ATTTGGATCATCTGTTGGAGTTG 57.090 39.130 0.00 0.00 0.00 3.16
819 837 3.354948 TGGATCATCTGTTGGAGTTGG 57.645 47.619 0.00 0.00 0.00 3.77
820 838 2.019984 GGATCATCTGTTGGAGTTGGC 58.980 52.381 0.00 0.00 0.00 4.52
821 839 2.356535 GGATCATCTGTTGGAGTTGGCT 60.357 50.000 0.00 0.00 0.00 4.75
822 840 2.957402 TCATCTGTTGGAGTTGGCTT 57.043 45.000 0.00 0.00 0.00 4.35
823 841 3.228188 TCATCTGTTGGAGTTGGCTTT 57.772 42.857 0.00 0.00 0.00 3.51
824 842 3.565307 TCATCTGTTGGAGTTGGCTTTT 58.435 40.909 0.00 0.00 0.00 2.27
825 843 3.960102 TCATCTGTTGGAGTTGGCTTTTT 59.040 39.130 0.00 0.00 0.00 1.94
843 861 2.478547 TTTTCGGAACTCCAAAACGC 57.521 45.000 0.00 0.00 35.14 4.84
844 862 1.380524 TTTCGGAACTCCAAAACGCA 58.619 45.000 0.00 0.00 35.14 5.24
845 863 0.658897 TTCGGAACTCCAAAACGCAC 59.341 50.000 0.00 0.00 35.14 5.34
846 864 0.179067 TCGGAACTCCAAAACGCACT 60.179 50.000 0.00 0.00 35.14 4.40
847 865 0.661020 CGGAACTCCAAAACGCACTT 59.339 50.000 0.00 0.00 35.14 3.16
848 866 1.064952 CGGAACTCCAAAACGCACTTT 59.935 47.619 0.00 0.00 35.14 2.66
849 867 2.478879 CGGAACTCCAAAACGCACTTTT 60.479 45.455 0.00 0.00 35.14 2.27
850 868 3.517602 GGAACTCCAAAACGCACTTTTT 58.482 40.909 0.00 0.00 35.64 1.94
851 869 3.305897 GGAACTCCAAAACGCACTTTTTG 59.694 43.478 5.60 5.60 43.34 2.44
852 870 3.859411 ACTCCAAAACGCACTTTTTGA 57.141 38.095 12.39 4.28 45.54 2.69
853 871 3.507786 ACTCCAAAACGCACTTTTTGAC 58.492 40.909 12.39 0.00 45.54 3.18
854 872 2.520979 TCCAAAACGCACTTTTTGACG 58.479 42.857 12.39 0.00 45.54 4.35
855 873 1.586123 CCAAAACGCACTTTTTGACGG 59.414 47.619 12.39 0.00 45.54 4.79
856 874 2.255316 CAAAACGCACTTTTTGACGGT 58.745 42.857 6.51 0.00 45.54 4.83
857 875 2.182904 AAACGCACTTTTTGACGGTC 57.817 45.000 0.00 0.00 0.00 4.79
858 876 0.379316 AACGCACTTTTTGACGGTCC 59.621 50.000 5.55 0.00 0.00 4.46
859 877 0.745128 ACGCACTTTTTGACGGTCCA 60.745 50.000 5.55 0.00 0.00 4.02
860 878 0.378962 CGCACTTTTTGACGGTCCAA 59.621 50.000 5.55 0.00 0.00 3.53
861 879 1.202200 CGCACTTTTTGACGGTCCAAA 60.202 47.619 5.55 4.43 34.56 3.28
862 880 2.732597 CGCACTTTTTGACGGTCCAAAA 60.733 45.455 16.35 16.35 42.30 2.44
863 881 3.453424 GCACTTTTTGACGGTCCAAAAT 58.547 40.909 17.25 7.98 43.12 1.82
864 882 3.868661 GCACTTTTTGACGGTCCAAAATT 59.131 39.130 17.25 11.11 43.12 1.82
865 883 4.331443 GCACTTTTTGACGGTCCAAAATTT 59.669 37.500 17.25 7.79 43.12 1.82
866 884 5.520649 GCACTTTTTGACGGTCCAAAATTTA 59.479 36.000 17.25 0.12 43.12 1.40
867 885 6.508880 GCACTTTTTGACGGTCCAAAATTTAC 60.509 38.462 17.25 6.32 43.12 2.01
868 886 6.531948 CACTTTTTGACGGTCCAAAATTTACA 59.468 34.615 17.25 4.67 43.12 2.41
869 887 7.223777 CACTTTTTGACGGTCCAAAATTTACAT 59.776 33.333 17.25 1.66 43.12 2.29
870 888 7.436970 ACTTTTTGACGGTCCAAAATTTACATC 59.563 33.333 17.25 0.00 43.12 3.06
871 889 6.642707 TTTGACGGTCCAAAATTTACATCT 57.357 33.333 5.55 0.00 33.56 2.90
872 890 5.873179 TGACGGTCCAAAATTTACATCTC 57.127 39.130 5.55 0.00 0.00 2.75
873 891 4.698304 TGACGGTCCAAAATTTACATCTCC 59.302 41.667 5.55 0.00 0.00 3.71
874 892 3.687698 ACGGTCCAAAATTTACATCTCCG 59.312 43.478 13.68 13.68 40.00 4.63
875 893 3.064820 CGGTCCAAAATTTACATCTCCGG 59.935 47.826 0.00 0.00 0.00 5.14
876 894 4.014406 GGTCCAAAATTTACATCTCCGGT 58.986 43.478 0.00 0.00 0.00 5.28
877 895 4.461431 GGTCCAAAATTTACATCTCCGGTT 59.539 41.667 0.00 0.00 0.00 4.44
878 896 5.047590 GGTCCAAAATTTACATCTCCGGTTT 60.048 40.000 0.00 0.00 0.00 3.27
879 897 6.452242 GTCCAAAATTTACATCTCCGGTTTT 58.548 36.000 0.00 0.00 0.00 2.43
880 898 6.364976 GTCCAAAATTTACATCTCCGGTTTTG 59.635 38.462 0.00 7.70 35.79 2.44
881 899 5.637387 CCAAAATTTACATCTCCGGTTTTGG 59.363 40.000 19.53 19.53 44.06 3.28
882 900 6.451393 CAAAATTTACATCTCCGGTTTTGGA 58.549 36.000 0.00 0.00 33.68 3.53
883 901 5.638596 AATTTACATCTCCGGTTTTGGAC 57.361 39.130 0.00 0.00 33.48 4.02
884 902 2.773993 TACATCTCCGGTTTTGGACC 57.226 50.000 0.00 0.00 45.55 4.46
895 913 4.787381 GGTTTTGGACCGTCAAAATTTG 57.213 40.909 1.80 0.00 44.90 2.32
896 914 4.434520 GGTTTTGGACCGTCAAAATTTGA 58.565 39.130 4.03 4.03 44.90 2.69
897 915 4.870991 GGTTTTGGACCGTCAAAATTTGAA 59.129 37.500 10.27 0.00 44.90 2.69
898 916 5.220510 GGTTTTGGACCGTCAAAATTTGAAC 60.221 40.000 10.27 4.41 44.90 3.18
899 917 3.719173 TGGACCGTCAAAATTTGAACC 57.281 42.857 10.27 11.49 42.15 3.62
900 918 3.024547 TGGACCGTCAAAATTTGAACCA 58.975 40.909 10.27 13.62 42.15 3.67
901 919 3.639094 TGGACCGTCAAAATTTGAACCAT 59.361 39.130 10.27 0.00 42.15 3.55
902 920 4.234574 GGACCGTCAAAATTTGAACCATC 58.765 43.478 10.27 6.08 42.15 3.51
903 921 4.022329 GGACCGTCAAAATTTGAACCATCT 60.022 41.667 10.27 0.00 42.15 2.90
904 922 5.182380 GGACCGTCAAAATTTGAACCATCTA 59.818 40.000 10.27 0.00 42.15 1.98
905 923 6.127730 GGACCGTCAAAATTTGAACCATCTAT 60.128 38.462 10.27 0.00 42.15 1.98
906 924 7.227049 ACCGTCAAAATTTGAACCATCTATT 57.773 32.000 10.27 0.00 42.15 1.73
907 925 7.090173 ACCGTCAAAATTTGAACCATCTATTG 58.910 34.615 10.27 0.00 42.15 1.90
908 926 7.040062 ACCGTCAAAATTTGAACCATCTATTGA 60.040 33.333 10.27 0.00 42.15 2.57
909 927 7.812191 CCGTCAAAATTTGAACCATCTATTGAA 59.188 33.333 10.27 0.00 42.15 2.69
910 928 8.853345 CGTCAAAATTTGAACCATCTATTGAAG 58.147 33.333 10.27 0.00 42.15 3.02
911 929 9.912634 GTCAAAATTTGAACCATCTATTGAAGA 57.087 29.630 10.27 0.00 42.15 2.87
955 973 1.004440 AGAGGCAGAACGCTTGTCC 60.004 57.895 0.00 0.00 41.91 4.02
956 974 1.301716 GAGGCAGAACGCTTGTCCA 60.302 57.895 0.00 0.00 41.91 4.02
958 976 2.328099 GGCAGAACGCTTGTCCAGG 61.328 63.158 0.00 0.00 41.91 4.45
971 989 1.541118 TCCAGGCTTGGTCATCCCA 60.541 57.895 15.41 0.00 45.26 4.37
972 990 1.379044 CCAGGCTTGGTCATCCCAC 60.379 63.158 6.72 0.00 45.19 4.61
981 1006 1.517832 GTCATCCCACCCTCAGTCG 59.482 63.158 0.00 0.00 0.00 4.18
1112 1147 2.274232 TTACGCCGCGTGTATCTGCT 62.274 55.000 28.10 0.00 41.39 4.24
1126 1161 6.346120 CGTGTATCTGCTTAAAGGAATCGATG 60.346 42.308 0.00 0.00 0.00 3.84
1192 3631 6.128822 GCAAAAGGAAAAATAGCAGCAGTAAC 60.129 38.462 0.00 0.00 0.00 2.50
1429 3905 5.423015 ACCACAATATCTACTCTGCACTTG 58.577 41.667 0.00 0.00 0.00 3.16
1430 3906 5.187772 ACCACAATATCTACTCTGCACTTGA 59.812 40.000 0.00 0.00 0.00 3.02
1442 3918 1.024271 GCACTTGAGTCTTGCCACAA 58.976 50.000 0.00 0.00 0.00 3.33
1468 3944 1.450312 GGCCAAGATGTCAGGTCCG 60.450 63.158 0.00 0.00 0.00 4.79
1472 3948 0.321671 CAAGATGTCAGGTCCGGTGT 59.678 55.000 0.00 0.00 0.00 4.16
1477 3953 1.080025 GTCAGGTCCGGTGTAGTGC 60.080 63.158 0.00 0.00 0.00 4.40
1557 4037 5.765182 ACAAGAACTGACCAAAGATTAGTGG 59.235 40.000 0.00 0.00 41.00 4.00
1596 4080 3.900601 TGGGAGTAATGTTTTGTGGCAAT 59.099 39.130 0.00 0.00 0.00 3.56
1599 4083 4.244862 GAGTAATGTTTTGTGGCAATGGG 58.755 43.478 0.00 0.00 0.00 4.00
1600 4084 3.900601 AGTAATGTTTTGTGGCAATGGGA 59.099 39.130 0.00 0.00 0.00 4.37
1606 4090 2.440980 GTGGCAATGGGAGGGAGC 60.441 66.667 0.00 0.00 0.00 4.70
1610 4094 1.535685 GCAATGGGAGGGAGCAGAT 59.464 57.895 0.00 0.00 0.00 2.90
1635 4119 1.666189 GAAGCGGAGTTTAGGTGATGC 59.334 52.381 0.00 0.00 0.00 3.91
1653 4137 5.119279 GTGATGCTTTGCAGATATACCTACG 59.881 44.000 0.00 0.00 43.65 3.51
1807 4292 0.686224 TGCTTCATTGGCCAAAAGGG 59.314 50.000 24.71 14.16 40.85 3.95
1820 4305 4.086457 GCCAAAAGGGAAGAATTGACCTA 58.914 43.478 0.00 0.00 40.01 3.08
2712 6994 4.801330 TTCTTTCTAGATTCGCCACTGA 57.199 40.909 0.00 0.00 0.00 3.41
2715 6997 2.515926 TCTAGATTCGCCACTGATGC 57.484 50.000 0.00 0.00 0.00 3.91
2716 6998 2.034878 TCTAGATTCGCCACTGATGCT 58.965 47.619 0.00 0.00 0.00 3.79
2717 6999 3.222603 TCTAGATTCGCCACTGATGCTA 58.777 45.455 0.00 0.00 0.00 3.49
2758 7040 5.128008 ACTTGATAAGGAGCAGACTTCCTAC 59.872 44.000 0.00 0.00 32.81 3.18
2759 7041 4.873010 TGATAAGGAGCAGACTTCCTACT 58.127 43.478 0.00 0.00 32.81 2.57
2760 7042 5.273208 TGATAAGGAGCAGACTTCCTACTT 58.727 41.667 0.00 0.18 36.29 2.24
2761 7043 5.721960 TGATAAGGAGCAGACTTCCTACTTT 59.278 40.000 3.35 0.00 34.24 2.66
2762 7044 4.545208 AAGGAGCAGACTTCCTACTTTC 57.455 45.455 0.00 0.00 27.75 2.62
2763 7045 2.835156 AGGAGCAGACTTCCTACTTTCC 59.165 50.000 0.00 0.00 31.06 3.13
2764 7046 2.835156 GGAGCAGACTTCCTACTTTCCT 59.165 50.000 0.00 0.00 0.00 3.36
2765 7047 4.024670 GGAGCAGACTTCCTACTTTCCTA 58.975 47.826 0.00 0.00 0.00 2.94
2766 7048 4.098807 GGAGCAGACTTCCTACTTTCCTAG 59.901 50.000 0.00 0.00 0.00 3.02
2767 7049 4.027437 AGCAGACTTCCTACTTTCCTAGG 58.973 47.826 0.82 0.82 35.43 3.02
2768 7050 3.133183 GCAGACTTCCTACTTTCCTAGGG 59.867 52.174 9.46 0.00 34.91 3.53
2769 7051 3.133183 CAGACTTCCTACTTTCCTAGGGC 59.867 52.174 9.46 0.00 34.91 5.19
2770 7052 2.435069 GACTTCCTACTTTCCTAGGGCC 59.565 54.545 9.46 0.00 34.91 5.80
2771 7053 2.225805 ACTTCCTACTTTCCTAGGGCCA 60.226 50.000 9.46 0.00 34.91 5.36
2772 7054 1.875488 TCCTACTTTCCTAGGGCCAC 58.125 55.000 9.46 0.00 34.91 5.01
2773 7055 1.079825 TCCTACTTTCCTAGGGCCACA 59.920 52.381 9.46 0.00 34.91 4.17
2774 7056 1.209747 CCTACTTTCCTAGGGCCACAC 59.790 57.143 9.46 0.00 30.95 3.82
2775 7057 1.906574 CTACTTTCCTAGGGCCACACA 59.093 52.381 9.46 0.00 0.00 3.72
2776 7058 1.372501 ACTTTCCTAGGGCCACACAT 58.627 50.000 9.46 0.00 0.00 3.21
2777 7059 1.004745 ACTTTCCTAGGGCCACACATG 59.995 52.381 9.46 0.00 0.00 3.21
2790 7072 4.202010 GGCCACACATGACACATTTATACC 60.202 45.833 0.00 0.00 0.00 2.73
2804 7088 9.342308 ACACATTTATACCATATTCTCCTGTTG 57.658 33.333 0.00 0.00 0.00 3.33
2910 7194 1.884464 CACATGCCATCCTCGTCCG 60.884 63.158 0.00 0.00 0.00 4.79
2921 7205 1.524863 CCTCGTCCGGCCGATAATCT 61.525 60.000 30.73 0.00 36.08 2.40
2922 7206 0.109689 CTCGTCCGGCCGATAATCTC 60.110 60.000 30.73 7.35 36.08 2.75
2923 7207 0.820482 TCGTCCGGCCGATAATCTCA 60.820 55.000 30.73 0.00 30.63 3.27
2924 7208 0.243907 CGTCCGGCCGATAATCTCAT 59.756 55.000 30.73 0.00 0.00 2.90
2925 7209 1.471287 CGTCCGGCCGATAATCTCATA 59.529 52.381 30.73 0.00 0.00 2.15
2943 7227 7.776933 TCTCATAAAGCATGACACACTATTC 57.223 36.000 0.00 0.00 38.79 1.75
2966 7250 4.774124 TCTATGAAGGGTGCTTCTTGATG 58.226 43.478 0.00 0.00 34.64 3.07
2969 7253 3.149196 TGAAGGGTGCTTCTTGATGTTC 58.851 45.455 0.00 0.00 34.64 3.18
3006 7290 6.474140 ACGTTCCATTATGTGTCCACTATA 57.526 37.500 0.00 0.00 0.00 1.31
3007 7291 7.062749 ACGTTCCATTATGTGTCCACTATAT 57.937 36.000 0.00 0.00 0.00 0.86
3189 7473 1.339610 GACTGCGCCATGATCTAGAGT 59.660 52.381 4.18 0.00 0.00 3.24
3851 8148 4.854399 TCTTGTTTGACTAAAATGCACCG 58.146 39.130 0.00 0.00 0.00 4.94
4016 8317 5.808042 ATCTAACTACTGCAATGCACTTG 57.192 39.130 2.72 0.00 37.94 3.16
4353 8673 7.770433 TGTCAGGATAATTTACCACATTCTGAG 59.230 37.037 0.00 0.00 0.00 3.35
4373 8693 1.541588 GAAACCACTCAGGCAATGGTC 59.458 52.381 0.00 0.00 46.18 4.02
4414 8734 9.622004 CTTGAAATAGATGATGTTGCCAATATC 57.378 33.333 7.18 7.18 0.00 1.63
4507 8827 5.221185 GCTGCATGATGACTTGGATTACAAT 60.221 40.000 0.00 0.00 38.65 2.71
4570 8890 0.529555 GGGATCTTCGTCTCAGCAGC 60.530 60.000 0.00 0.00 0.00 5.25
4675 8998 2.347731 GAGTTAGGGTGCCTTCTTTCG 58.652 52.381 0.00 0.00 34.61 3.46
5000 9323 6.513180 TCATCTTTGGCGGTAATACTCTAAG 58.487 40.000 0.00 0.00 0.00 2.18
5030 9353 4.497507 GGTTATTACTGGCGATTTCCTTGC 60.498 45.833 0.00 0.00 0.00 4.01
5084 9407 8.470040 TTTATACAGACAGACATACCGTTTTC 57.530 34.615 0.00 0.00 0.00 2.29
5222 9545 2.816087 CCTTGGAGACCTTGATGTTGTG 59.184 50.000 0.00 0.00 0.00 3.33
5416 9740 1.855441 ATGCCAGGACACTGCCATGA 61.855 55.000 0.00 0.00 40.89 3.07
5443 9767 5.295152 CATCAAGGATGTGAAGATCATCGA 58.705 41.667 0.00 0.00 41.54 3.59
5507 9831 2.034939 TCTTGAGAACGCGGTTTCACTA 59.965 45.455 17.92 5.45 0.00 2.74
5785 10109 6.535508 GCTCGTTTCATTAAGTTATCTCACCT 59.464 38.462 0.00 0.00 0.00 4.00
5878 10202 5.541845 TCTGCCGATTATTTCATCTAGTGG 58.458 41.667 0.00 0.00 0.00 4.00
5886 10210 9.077674 CGATTATTTCATCTAGTGGTATAGTGC 57.922 37.037 0.00 0.00 0.00 4.40
5897 10221 5.383476 AGTGGTATAGTGCTATAGAACCGT 58.617 41.667 7.29 0.00 28.77 4.83
5912 10236 0.176680 ACCGTCTCATGGACATGCTC 59.823 55.000 7.41 0.58 44.70 4.26
5920 10244 0.757935 ATGGACATGCTCCCAATGCC 60.758 55.000 10.60 0.00 38.49 4.40
5933 10257 2.048023 AATGCCAGTGCCATGACGG 61.048 57.895 0.00 0.00 36.33 4.79
5968 10297 6.192234 AGAACTTCTGCAATGATCATCAAC 57.808 37.500 9.06 2.22 0.00 3.18
5973 10302 9.570468 AACTTCTGCAATGATCATCAACTATAT 57.430 29.630 9.06 0.00 0.00 0.86
6158 10487 6.265422 ACTTAAGCCCATAATATTTGCCACTC 59.735 38.462 1.29 0.00 0.00 3.51
6312 10648 1.066573 GTGAGGTGTGTCTCCATGAGG 60.067 57.143 0.00 0.00 33.04 3.86
6313 10649 0.539051 GAGGTGTGTCTCCATGAGGG 59.461 60.000 0.00 0.00 34.83 4.30
6314 10650 0.117140 AGGTGTGTCTCCATGAGGGA 59.883 55.000 0.00 0.00 45.89 4.20
6325 10661 1.406069 CCATGAGGGAGAACTGAACGG 60.406 57.143 0.00 0.00 40.01 4.44
6336 10672 1.064825 ACTGAACGGGGGAGACATTT 58.935 50.000 0.00 0.00 0.00 2.32
6452 10790 4.870123 TGTCCATGAAAAAGATGTTGGG 57.130 40.909 0.00 0.00 0.00 4.12
6591 10933 4.904853 ACACCATGTTTCCCTTAAACCAAT 59.095 37.500 0.00 0.00 45.83 3.16
6607 10949 1.067635 CCAATTGGTAGCAGCAACCAC 60.068 52.381 16.90 0.00 46.56 4.16
6658 11000 4.641541 CCTCCAGCATATGAAAATGTGTGA 59.358 41.667 6.97 0.00 0.00 3.58
6660 11002 5.953183 TCCAGCATATGAAAATGTGTGAAC 58.047 37.500 6.97 0.00 0.00 3.18
6663 11005 6.349528 CCAGCATATGAAAATGTGTGAACTGA 60.350 38.462 6.97 0.00 0.00 3.41
6670 11012 5.239306 TGAAAATGTGTGAACTGAGGTGATC 59.761 40.000 0.00 0.00 0.00 2.92
6701 11043 3.634283 CATGTGGGTTAACCGAAAACAC 58.366 45.455 18.39 18.57 44.64 3.32
6702 11044 2.719739 TGTGGGTTAACCGAAAACACA 58.280 42.857 22.31 22.31 44.64 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
513 531 4.888326 TCTTTTGCCATGCCATTTTACT 57.112 36.364 0.00 0.00 0.00 2.24
523 541 2.880268 TCTATGCGGATCTTTTGCCATG 59.120 45.455 0.00 0.00 0.00 3.66
524 542 3.213206 TCTATGCGGATCTTTTGCCAT 57.787 42.857 0.00 0.00 0.00 4.40
525 543 2.708216 TCTATGCGGATCTTTTGCCA 57.292 45.000 0.00 0.00 0.00 4.92
526 544 3.565482 TGAATCTATGCGGATCTTTTGCC 59.435 43.478 0.00 0.00 0.00 4.52
527 545 4.818534 TGAATCTATGCGGATCTTTTGC 57.181 40.909 0.00 0.00 0.00 3.68
528 546 9.903682 AAATAATGAATCTATGCGGATCTTTTG 57.096 29.630 0.00 0.00 0.00 2.44
529 547 9.903682 CAAATAATGAATCTATGCGGATCTTTT 57.096 29.630 0.00 0.00 0.00 2.27
530 548 9.071276 ACAAATAATGAATCTATGCGGATCTTT 57.929 29.630 0.00 0.00 0.00 2.52
531 549 8.627208 ACAAATAATGAATCTATGCGGATCTT 57.373 30.769 0.00 0.00 0.00 2.40
532 550 8.627208 AACAAATAATGAATCTATGCGGATCT 57.373 30.769 0.00 0.00 0.00 2.75
533 551 9.121517 CAAACAAATAATGAATCTATGCGGATC 57.878 33.333 0.00 0.00 0.00 3.36
534 552 8.632679 ACAAACAAATAATGAATCTATGCGGAT 58.367 29.630 0.00 0.00 0.00 4.18
535 553 7.995289 ACAAACAAATAATGAATCTATGCGGA 58.005 30.769 0.00 0.00 0.00 5.54
536 554 8.633075 AACAAACAAATAATGAATCTATGCGG 57.367 30.769 0.00 0.00 0.00 5.69
537 555 9.288124 TGAACAAACAAATAATGAATCTATGCG 57.712 29.630 0.00 0.00 0.00 4.73
581 599 9.239002 GCAACACAAATACAACATAGTTTTGTA 57.761 29.630 0.00 0.00 42.23 2.41
582 600 7.761704 TGCAACACAAATACAACATAGTTTTGT 59.238 29.630 0.00 0.00 40.18 2.83
583 601 8.124586 TGCAACACAAATACAACATAGTTTTG 57.875 30.769 0.00 0.00 34.34 2.44
584 602 8.885494 ATGCAACACAAATACAACATAGTTTT 57.115 26.923 0.00 0.00 0.00 2.43
585 603 8.763356 CAATGCAACACAAATACAACATAGTTT 58.237 29.630 0.00 0.00 0.00 2.66
586 604 7.095691 GCAATGCAACACAAATACAACATAGTT 60.096 33.333 0.00 0.00 0.00 2.24
587 605 6.365789 GCAATGCAACACAAATACAACATAGT 59.634 34.615 0.00 0.00 0.00 2.12
588 606 6.365518 TGCAATGCAACACAAATACAACATAG 59.634 34.615 5.01 0.00 34.76 2.23
589 607 6.218746 TGCAATGCAACACAAATACAACATA 58.781 32.000 5.01 0.00 34.76 2.29
590 608 5.055144 TGCAATGCAACACAAATACAACAT 58.945 33.333 5.01 0.00 34.76 2.71
591 609 4.436332 TGCAATGCAACACAAATACAACA 58.564 34.783 5.01 0.00 34.76 3.33
592 610 5.406175 AGATGCAATGCAACACAAATACAAC 59.594 36.000 13.45 0.00 43.62 3.32
593 611 5.539979 AGATGCAATGCAACACAAATACAA 58.460 33.333 13.45 0.00 43.62 2.41
594 612 5.136816 AGATGCAATGCAACACAAATACA 57.863 34.783 13.45 0.00 43.62 2.29
595 613 4.563976 GGAGATGCAATGCAACACAAATAC 59.436 41.667 13.45 0.00 43.62 1.89
596 614 4.463539 AGGAGATGCAATGCAACACAAATA 59.536 37.500 13.45 0.00 43.62 1.40
597 615 3.259876 AGGAGATGCAATGCAACACAAAT 59.740 39.130 13.45 0.00 43.62 2.32
598 616 2.629137 AGGAGATGCAATGCAACACAAA 59.371 40.909 13.45 0.00 43.62 2.83
599 617 2.029739 CAGGAGATGCAATGCAACACAA 60.030 45.455 13.45 0.00 43.62 3.33
600 618 1.542472 CAGGAGATGCAATGCAACACA 59.458 47.619 13.45 0.00 43.62 3.72
601 619 1.135199 CCAGGAGATGCAATGCAACAC 60.135 52.381 13.45 8.32 43.62 3.32
602 620 1.179152 CCAGGAGATGCAATGCAACA 58.821 50.000 13.45 0.00 43.62 3.33
603 621 1.466856 TCCAGGAGATGCAATGCAAC 58.533 50.000 13.45 10.19 43.62 4.17
604 622 2.092049 AGATCCAGGAGATGCAATGCAA 60.092 45.455 13.45 0.00 43.62 4.08
605 623 1.493446 AGATCCAGGAGATGCAATGCA 59.507 47.619 11.44 11.44 44.86 3.96
606 624 1.880675 CAGATCCAGGAGATGCAATGC 59.119 52.381 0.00 0.00 34.42 3.56
607 625 3.487120 TCAGATCCAGGAGATGCAATG 57.513 47.619 0.00 0.00 34.42 2.82
608 626 3.715315 TCTTCAGATCCAGGAGATGCAAT 59.285 43.478 0.00 0.00 34.42 3.56
609 627 3.109928 TCTTCAGATCCAGGAGATGCAA 58.890 45.455 0.00 0.00 34.42 4.08
610 628 2.755686 TCTTCAGATCCAGGAGATGCA 58.244 47.619 0.00 0.00 34.42 3.96
611 629 3.134442 AGTTCTTCAGATCCAGGAGATGC 59.866 47.826 0.00 0.00 34.42 3.91
612 630 6.041865 ACATAGTTCTTCAGATCCAGGAGATG 59.958 42.308 0.00 0.00 34.42 2.90
613 631 6.142498 ACATAGTTCTTCAGATCCAGGAGAT 58.858 40.000 0.00 0.00 38.17 2.75
614 632 5.523588 ACATAGTTCTTCAGATCCAGGAGA 58.476 41.667 0.00 0.00 0.00 3.71
615 633 5.867903 ACATAGTTCTTCAGATCCAGGAG 57.132 43.478 0.00 0.00 0.00 3.69
616 634 7.921041 ATTACATAGTTCTTCAGATCCAGGA 57.079 36.000 0.00 0.00 0.00 3.86
667 685 9.593134 AGCCGCAAATATTTGAAAATAACATAA 57.407 25.926 28.33 0.00 40.55 1.90
668 686 9.029243 CAGCCGCAAATATTTGAAAATAACATA 57.971 29.630 28.33 0.00 40.55 2.29
669 687 7.548780 ACAGCCGCAAATATTTGAAAATAACAT 59.451 29.630 28.33 5.20 40.55 2.71
670 688 6.870965 ACAGCCGCAAATATTTGAAAATAACA 59.129 30.769 28.33 0.00 40.55 2.41
671 689 7.289587 ACAGCCGCAAATATTTGAAAATAAC 57.710 32.000 28.33 10.23 40.55 1.89
672 690 8.029522 TGTACAGCCGCAAATATTTGAAAATAA 58.970 29.630 28.33 7.63 40.55 1.40
673 691 7.539436 TGTACAGCCGCAAATATTTGAAAATA 58.461 30.769 28.33 11.31 40.55 1.40
674 692 6.393990 TGTACAGCCGCAAATATTTGAAAAT 58.606 32.000 28.33 10.59 40.55 1.82
675 693 5.773575 TGTACAGCCGCAAATATTTGAAAA 58.226 33.333 28.33 6.15 40.55 2.29
676 694 5.048364 ACTGTACAGCCGCAAATATTTGAAA 60.048 36.000 28.33 3.39 40.55 2.69
677 695 4.457603 ACTGTACAGCCGCAAATATTTGAA 59.542 37.500 28.33 4.62 40.55 2.69
678 696 4.006989 ACTGTACAGCCGCAAATATTTGA 58.993 39.130 28.33 5.95 40.55 2.69
679 697 4.097714 CACTGTACAGCCGCAAATATTTG 58.902 43.478 22.90 21.54 41.03 2.32
680 698 3.128589 CCACTGTACAGCCGCAAATATTT 59.871 43.478 22.90 0.00 0.00 1.40
681 699 2.682856 CCACTGTACAGCCGCAAATATT 59.317 45.455 22.90 0.00 0.00 1.28
682 700 2.288666 CCACTGTACAGCCGCAAATAT 58.711 47.619 22.90 0.00 0.00 1.28
683 701 1.732941 CCACTGTACAGCCGCAAATA 58.267 50.000 22.90 0.00 0.00 1.40
684 702 1.586154 GCCACTGTACAGCCGCAAAT 61.586 55.000 22.90 0.00 0.00 2.32
685 703 2.258013 GCCACTGTACAGCCGCAAA 61.258 57.895 22.90 0.00 0.00 3.68
686 704 2.668212 GCCACTGTACAGCCGCAA 60.668 61.111 22.90 0.00 0.00 4.85
687 705 3.625897 AGCCACTGTACAGCCGCA 61.626 61.111 27.35 0.00 0.00 5.69
688 706 3.121030 CAGCCACTGTACAGCCGC 61.121 66.667 22.90 22.06 0.00 6.53
689 707 2.434884 CCAGCCACTGTACAGCCG 60.435 66.667 22.90 13.78 0.00 5.52
690 708 1.376037 GTCCAGCCACTGTACAGCC 60.376 63.158 22.90 11.27 0.00 4.85
691 709 0.671781 CTGTCCAGCCACTGTACAGC 60.672 60.000 22.90 10.15 40.44 4.40
692 710 0.671781 GCTGTCCAGCCACTGTACAG 60.672 60.000 21.44 21.44 46.47 2.74
703 721 2.031012 TGTTCAGCCGCTGTCCAG 59.969 61.111 19.77 0.00 32.61 3.86
704 722 2.031012 CTGTTCAGCCGCTGTCCA 59.969 61.111 19.77 15.35 32.61 4.02
705 723 3.426568 GCTGTTCAGCCGCTGTCC 61.427 66.667 19.77 11.80 32.61 4.02
706 724 2.358003 AGCTGTTCAGCCGCTGTC 60.358 61.111 19.77 14.13 34.90 3.51
707 725 2.667536 CAGCTGTTCAGCCGCTGT 60.668 61.111 19.77 0.00 44.50 4.40
732 750 4.362476 CCAAAACCGGCCAGCAGC 62.362 66.667 0.00 0.00 42.60 5.25
733 751 2.597217 TCCAAAACCGGCCAGCAG 60.597 61.111 0.00 0.00 0.00 4.24
734 752 2.909965 GTCCAAAACCGGCCAGCA 60.910 61.111 0.00 0.00 0.00 4.41
735 753 3.680786 GGTCCAAAACCGGCCAGC 61.681 66.667 0.00 0.00 38.58 4.85
743 761 4.314961 GGTCCAAATTCATGGTCCAAAAC 58.685 43.478 0.00 0.00 44.93 2.43
744 762 3.006323 CGGTCCAAATTCATGGTCCAAAA 59.994 43.478 11.48 0.00 45.59 2.44
745 763 2.560542 CGGTCCAAATTCATGGTCCAAA 59.439 45.455 11.48 0.00 45.59 3.28
746 764 2.166829 CGGTCCAAATTCATGGTCCAA 58.833 47.619 11.48 0.00 45.59 3.53
747 765 1.074727 ACGGTCCAAATTCATGGTCCA 59.925 47.619 11.48 0.00 45.59 4.02
748 766 1.743394 GACGGTCCAAATTCATGGTCC 59.257 52.381 0.00 3.15 42.95 4.46
749 767 2.711542 AGACGGTCCAAATTCATGGTC 58.288 47.619 4.14 0.00 41.46 4.02
750 768 2.879103 AGACGGTCCAAATTCATGGT 57.121 45.000 4.14 0.00 41.46 3.55
751 769 4.036734 CCAATAGACGGTCCAAATTCATGG 59.963 45.833 4.14 0.00 42.12 3.66
752 770 4.881273 TCCAATAGACGGTCCAAATTCATG 59.119 41.667 4.14 0.00 0.00 3.07
753 771 5.110814 TCCAATAGACGGTCCAAATTCAT 57.889 39.130 4.14 0.00 0.00 2.57
754 772 4.019681 ACTCCAATAGACGGTCCAAATTCA 60.020 41.667 4.14 0.00 0.00 2.57
755 773 4.514401 ACTCCAATAGACGGTCCAAATTC 58.486 43.478 4.14 0.00 0.00 2.17
756 774 4.569719 ACTCCAATAGACGGTCCAAATT 57.430 40.909 4.14 0.11 0.00 1.82
757 775 4.261801 CAACTCCAATAGACGGTCCAAAT 58.738 43.478 4.14 0.00 0.00 2.32
758 776 3.670625 CAACTCCAATAGACGGTCCAAA 58.329 45.455 4.14 0.00 0.00 3.28
759 777 2.614481 GCAACTCCAATAGACGGTCCAA 60.614 50.000 4.14 0.00 0.00 3.53
760 778 1.066430 GCAACTCCAATAGACGGTCCA 60.066 52.381 4.14 0.00 0.00 4.02
761 779 1.207329 AGCAACTCCAATAGACGGTCC 59.793 52.381 4.14 0.00 0.00 4.46
762 780 2.094182 TGAGCAACTCCAATAGACGGTC 60.094 50.000 0.00 0.00 0.00 4.79
763 781 1.899814 TGAGCAACTCCAATAGACGGT 59.100 47.619 0.00 0.00 0.00 4.83
764 782 2.672961 TGAGCAACTCCAATAGACGG 57.327 50.000 0.00 0.00 0.00 4.79
765 783 4.201851 CCAAATGAGCAACTCCAATAGACG 60.202 45.833 0.00 0.00 0.00 4.18
766 784 4.943705 TCCAAATGAGCAACTCCAATAGAC 59.056 41.667 0.00 0.00 0.00 2.59
767 785 4.943705 GTCCAAATGAGCAACTCCAATAGA 59.056 41.667 0.00 0.00 0.00 1.98
768 786 4.096984 GGTCCAAATGAGCAACTCCAATAG 59.903 45.833 0.00 0.00 41.24 1.73
769 787 4.016444 GGTCCAAATGAGCAACTCCAATA 58.984 43.478 0.00 0.00 41.24 1.90
770 788 2.827921 GGTCCAAATGAGCAACTCCAAT 59.172 45.455 0.00 0.00 41.24 3.16
771 789 2.238521 GGTCCAAATGAGCAACTCCAA 58.761 47.619 0.00 0.00 41.24 3.53
772 790 1.909700 GGTCCAAATGAGCAACTCCA 58.090 50.000 0.00 0.00 41.24 3.86
779 797 4.081531 TCCAAATTCATGGTCCAAATGAGC 60.082 41.667 0.00 0.00 41.46 4.26
780 798 5.664294 TCCAAATTCATGGTCCAAATGAG 57.336 39.130 0.00 0.00 41.46 2.90
781 799 5.720520 TGATCCAAATTCATGGTCCAAATGA 59.279 36.000 0.00 0.00 41.46 2.57
782 800 5.979993 TGATCCAAATTCATGGTCCAAATG 58.020 37.500 0.00 0.00 41.46 2.32
783 801 6.614087 AGATGATCCAAATTCATGGTCCAAAT 59.386 34.615 0.00 0.00 41.46 2.32
784 802 5.959594 AGATGATCCAAATTCATGGTCCAAA 59.040 36.000 0.00 0.00 41.46 3.28
785 803 5.361571 CAGATGATCCAAATTCATGGTCCAA 59.638 40.000 0.00 0.00 41.46 3.53
786 804 4.891168 CAGATGATCCAAATTCATGGTCCA 59.109 41.667 0.00 0.00 41.46 4.02
787 805 4.891756 ACAGATGATCCAAATTCATGGTCC 59.108 41.667 0.00 0.00 41.46 4.46
788 806 6.270815 CAACAGATGATCCAAATTCATGGTC 58.729 40.000 0.00 0.00 41.46 4.02
789 807 5.128171 CCAACAGATGATCCAAATTCATGGT 59.872 40.000 0.00 0.00 41.46 3.55
790 808 5.361571 TCCAACAGATGATCCAAATTCATGG 59.638 40.000 0.00 0.00 42.12 3.66
791 809 6.096423 ACTCCAACAGATGATCCAAATTCATG 59.904 38.462 0.00 0.00 34.03 3.07
792 810 6.192773 ACTCCAACAGATGATCCAAATTCAT 58.807 36.000 0.00 0.00 36.54 2.57
793 811 5.573219 ACTCCAACAGATGATCCAAATTCA 58.427 37.500 0.00 0.00 0.00 2.57
794 812 6.327934 CAACTCCAACAGATGATCCAAATTC 58.672 40.000 0.00 0.00 0.00 2.17
795 813 5.186409 CCAACTCCAACAGATGATCCAAATT 59.814 40.000 0.00 0.00 0.00 1.82
796 814 4.708421 CCAACTCCAACAGATGATCCAAAT 59.292 41.667 0.00 0.00 0.00 2.32
797 815 4.081406 CCAACTCCAACAGATGATCCAAA 58.919 43.478 0.00 0.00 0.00 3.28
798 816 3.689347 CCAACTCCAACAGATGATCCAA 58.311 45.455 0.00 0.00 0.00 3.53
799 817 2.618816 GCCAACTCCAACAGATGATCCA 60.619 50.000 0.00 0.00 0.00 3.41
800 818 2.019984 GCCAACTCCAACAGATGATCC 58.980 52.381 0.00 0.00 0.00 3.36
801 819 2.996631 AGCCAACTCCAACAGATGATC 58.003 47.619 0.00 0.00 0.00 2.92
802 820 3.446442 AAGCCAACTCCAACAGATGAT 57.554 42.857 0.00 0.00 0.00 2.45
803 821 2.957402 AAGCCAACTCCAACAGATGA 57.043 45.000 0.00 0.00 0.00 2.92
804 822 4.326504 AAAAAGCCAACTCCAACAGATG 57.673 40.909 0.00 0.00 0.00 2.90
825 843 1.064357 GTGCGTTTTGGAGTTCCGAAA 59.936 47.619 9.11 9.11 44.84 3.46
826 844 0.658897 GTGCGTTTTGGAGTTCCGAA 59.341 50.000 0.00 0.00 39.43 4.30
827 845 0.179067 AGTGCGTTTTGGAGTTCCGA 60.179 50.000 0.00 0.00 39.43 4.55
828 846 0.661020 AAGTGCGTTTTGGAGTTCCG 59.339 50.000 0.00 0.00 39.43 4.30
829 847 2.863401 AAAGTGCGTTTTGGAGTTCC 57.137 45.000 0.00 0.00 30.30 3.62
830 848 4.031314 GTCAAAAAGTGCGTTTTGGAGTTC 59.969 41.667 18.10 5.96 44.86 3.01
831 849 3.924073 GTCAAAAAGTGCGTTTTGGAGTT 59.076 39.130 18.10 0.00 44.86 3.01
832 850 3.507786 GTCAAAAAGTGCGTTTTGGAGT 58.492 40.909 18.10 0.00 44.86 3.85
833 851 2.529894 CGTCAAAAAGTGCGTTTTGGAG 59.470 45.455 18.10 11.36 44.86 3.86
834 852 2.520979 CGTCAAAAAGTGCGTTTTGGA 58.479 42.857 18.10 8.15 44.86 3.53
835 853 1.586123 CCGTCAAAAAGTGCGTTTTGG 59.414 47.619 18.10 6.28 44.86 3.28
836 854 2.255316 ACCGTCAAAAAGTGCGTTTTG 58.745 42.857 14.16 14.16 45.71 2.44
837 855 2.521996 GACCGTCAAAAAGTGCGTTTT 58.478 42.857 0.00 0.00 40.26 2.43
838 856 1.202211 GGACCGTCAAAAAGTGCGTTT 60.202 47.619 0.00 0.00 0.00 3.60
839 857 0.379316 GGACCGTCAAAAAGTGCGTT 59.621 50.000 0.00 0.00 0.00 4.84
840 858 0.745128 TGGACCGTCAAAAAGTGCGT 60.745 50.000 0.00 0.00 0.00 5.24
841 859 0.378962 TTGGACCGTCAAAAAGTGCG 59.621 50.000 0.00 0.00 0.00 5.34
842 860 2.570442 TTTGGACCGTCAAAAAGTGC 57.430 45.000 0.00 0.00 34.17 4.40
843 861 6.531948 TGTAAATTTTGGACCGTCAAAAAGTG 59.468 34.615 16.96 0.00 45.79 3.16
844 862 6.631962 TGTAAATTTTGGACCGTCAAAAAGT 58.368 32.000 16.96 12.73 45.79 2.66
845 863 7.651704 AGATGTAAATTTTGGACCGTCAAAAAG 59.348 33.333 16.96 0.00 45.79 2.27
846 864 7.493367 AGATGTAAATTTTGGACCGTCAAAAA 58.507 30.769 14.81 14.81 45.79 1.94
847 865 7.045126 AGATGTAAATTTTGGACCGTCAAAA 57.955 32.000 0.00 0.00 46.42 2.44
848 866 6.294286 GGAGATGTAAATTTTGGACCGTCAAA 60.294 38.462 0.00 0.00 35.15 2.69
849 867 5.182380 GGAGATGTAAATTTTGGACCGTCAA 59.818 40.000 0.00 0.00 0.00 3.18
850 868 4.698304 GGAGATGTAAATTTTGGACCGTCA 59.302 41.667 0.00 0.00 0.00 4.35
851 869 4.201783 CGGAGATGTAAATTTTGGACCGTC 60.202 45.833 0.00 0.00 33.44 4.79
852 870 3.687698 CGGAGATGTAAATTTTGGACCGT 59.312 43.478 0.00 0.00 33.44 4.83
853 871 3.064820 CCGGAGATGTAAATTTTGGACCG 59.935 47.826 0.00 0.00 37.02 4.79
854 872 4.014406 ACCGGAGATGTAAATTTTGGACC 58.986 43.478 9.46 0.00 0.00 4.46
855 873 5.638596 AACCGGAGATGTAAATTTTGGAC 57.361 39.130 9.46 0.00 0.00 4.02
856 874 6.451393 CAAAACCGGAGATGTAAATTTTGGA 58.549 36.000 9.46 0.00 0.00 3.53
857 875 5.637387 CCAAAACCGGAGATGTAAATTTTGG 59.363 40.000 19.53 19.53 0.00 3.28
858 876 6.364976 GTCCAAAACCGGAGATGTAAATTTTG 59.635 38.462 9.46 11.16 35.10 2.44
859 877 6.452242 GTCCAAAACCGGAGATGTAAATTTT 58.548 36.000 9.46 0.00 35.10 1.82
860 878 5.047590 GGTCCAAAACCGGAGATGTAAATTT 60.048 40.000 9.46 0.00 38.58 1.82
861 879 4.461431 GGTCCAAAACCGGAGATGTAAATT 59.539 41.667 9.46 0.00 38.58 1.82
862 880 4.014406 GGTCCAAAACCGGAGATGTAAAT 58.986 43.478 9.46 0.00 38.58 1.40
863 881 3.414269 GGTCCAAAACCGGAGATGTAAA 58.586 45.455 9.46 0.00 38.58 2.01
864 882 3.062122 GGTCCAAAACCGGAGATGTAA 57.938 47.619 9.46 0.00 38.58 2.41
865 883 2.773993 GGTCCAAAACCGGAGATGTA 57.226 50.000 9.46 0.00 38.58 2.29
866 884 3.644861 GGTCCAAAACCGGAGATGT 57.355 52.632 9.46 0.00 38.58 3.06
874 892 4.434520 TCAAATTTTGACGGTCCAAAACC 58.565 39.130 10.88 0.00 45.32 3.27
875 893 5.220510 GGTTCAAATTTTGACGGTCCAAAAC 60.221 40.000 11.30 4.21 45.32 2.43
876 894 4.870991 GGTTCAAATTTTGACGGTCCAAAA 59.129 37.500 11.30 13.64 46.18 2.44
877 895 4.081642 TGGTTCAAATTTTGACGGTCCAAA 60.082 37.500 11.30 9.48 39.87 3.28
878 896 3.447586 TGGTTCAAATTTTGACGGTCCAA 59.552 39.130 11.30 0.00 39.87 3.53
879 897 3.024547 TGGTTCAAATTTTGACGGTCCA 58.975 40.909 11.30 13.47 39.87 4.02
880 898 3.719173 TGGTTCAAATTTTGACGGTCC 57.281 42.857 11.30 11.46 39.87 4.46
881 899 5.121221 AGATGGTTCAAATTTTGACGGTC 57.879 39.130 11.30 0.00 39.87 4.79
882 900 6.834168 ATAGATGGTTCAAATTTTGACGGT 57.166 33.333 11.30 0.00 39.87 4.83
883 901 7.312154 TCAATAGATGGTTCAAATTTTGACGG 58.688 34.615 11.30 0.00 39.87 4.79
884 902 8.741101 TTCAATAGATGGTTCAAATTTTGACG 57.259 30.769 11.30 0.00 39.87 4.35
885 903 9.912634 TCTTCAATAGATGGTTCAAATTTTGAC 57.087 29.630 11.30 7.13 39.87 3.18
915 933 4.953667 TCGGTAAACTCGCTCTATCTAGA 58.046 43.478 0.00 0.00 0.00 2.43
916 934 4.989797 TCTCGGTAAACTCGCTCTATCTAG 59.010 45.833 0.00 0.00 0.00 2.43
917 935 4.953667 TCTCGGTAAACTCGCTCTATCTA 58.046 43.478 0.00 0.00 0.00 1.98
918 936 3.806380 TCTCGGTAAACTCGCTCTATCT 58.194 45.455 0.00 0.00 0.00 1.98
919 937 3.058777 CCTCTCGGTAAACTCGCTCTATC 60.059 52.174 0.00 0.00 0.00 2.08
971 989 4.736739 TCGATGACGACTGAGGGT 57.263 55.556 0.00 0.00 43.81 4.34
1112 1147 6.464222 ACTCAGTGAACATCGATTCCTTTAA 58.536 36.000 0.00 0.00 0.00 1.52
1126 1161 5.979288 TCCCTACTCTTAACTCAGTGAAC 57.021 43.478 0.00 0.00 0.00 3.18
1192 3631 7.890515 TCTATGGCTATCTGTGTATCTTCTTG 58.109 38.462 0.00 0.00 0.00 3.02
1241 3680 5.219739 AGAGGATTGGATGGCTAAGACTAA 58.780 41.667 0.00 0.00 0.00 2.24
1242 3681 4.820775 AGAGGATTGGATGGCTAAGACTA 58.179 43.478 0.00 0.00 0.00 2.59
1243 3682 3.663198 AGAGGATTGGATGGCTAAGACT 58.337 45.455 0.00 0.00 0.00 3.24
1244 3683 4.384940 GAAGAGGATTGGATGGCTAAGAC 58.615 47.826 0.00 0.00 0.00 3.01
1245 3684 3.392616 GGAAGAGGATTGGATGGCTAAGA 59.607 47.826 0.00 0.00 0.00 2.10
1246 3685 3.137176 TGGAAGAGGATTGGATGGCTAAG 59.863 47.826 0.00 0.00 0.00 2.18
1429 3905 3.366679 CCAATGTCATTGTGGCAAGACTC 60.367 47.826 21.32 0.00 34.67 3.36
1430 3906 2.559668 CCAATGTCATTGTGGCAAGACT 59.440 45.455 21.32 0.00 34.67 3.24
1468 3944 8.263940 TCAGAACTAATAATTTGCACTACACC 57.736 34.615 0.00 0.00 0.00 4.16
1472 3948 9.330063 CCATCTCAGAACTAATAATTTGCACTA 57.670 33.333 0.00 0.00 0.00 2.74
1477 3953 8.616076 GTCCACCATCTCAGAACTAATAATTTG 58.384 37.037 0.00 0.00 0.00 2.32
1533 4013 5.765182 CCACTAATCTTTGGTCAGTTCTTGT 59.235 40.000 0.00 0.00 0.00 3.16
1557 4037 4.141914 ACTCCCACTTATTTCCGATCAGAC 60.142 45.833 0.00 0.00 0.00 3.51
1559 4039 4.408182 ACTCCCACTTATTTCCGATCAG 57.592 45.455 0.00 0.00 0.00 2.90
1596 4080 0.841961 CATCAATCTGCTCCCTCCCA 59.158 55.000 0.00 0.00 0.00 4.37
1599 4083 2.220313 GCTTCATCAATCTGCTCCCTC 58.780 52.381 0.00 0.00 0.00 4.30
1600 4084 1.474677 CGCTTCATCAATCTGCTCCCT 60.475 52.381 0.00 0.00 0.00 4.20
1606 4090 4.272018 CCTAAACTCCGCTTCATCAATCTG 59.728 45.833 0.00 0.00 0.00 2.90
1610 4094 3.007506 TCACCTAAACTCCGCTTCATCAA 59.992 43.478 0.00 0.00 0.00 2.57
1635 4119 7.542477 CCATAAGACGTAGGTATATCTGCAAAG 59.458 40.741 1.85 0.00 0.00 2.77
1763 4248 3.541996 ATCCATCTGCAACACATCGTA 57.458 42.857 0.00 0.00 0.00 3.43
1807 4292 7.546316 GTCTTCTTGTAGGTAGGTCAATTCTTC 59.454 40.741 0.00 0.00 0.00 2.87
1820 4305 4.202367 CCAGAGGTTTGTCTTCTTGTAGGT 60.202 45.833 0.00 0.00 29.81 3.08
1858 4343 1.302993 GGCTTGGCCCTAAACGTCA 60.303 57.895 0.00 0.00 44.06 4.35
2018 4504 1.340248 GCCTGCCGATGCTTAGTAGTA 59.660 52.381 0.00 0.00 38.71 1.82
2758 7040 1.281867 TCATGTGTGGCCCTAGGAAAG 59.718 52.381 11.48 0.00 0.00 2.62
2759 7041 1.004277 GTCATGTGTGGCCCTAGGAAA 59.996 52.381 11.48 0.00 0.00 3.13
2760 7042 0.618458 GTCATGTGTGGCCCTAGGAA 59.382 55.000 11.48 0.00 0.00 3.36
2761 7043 0.546507 TGTCATGTGTGGCCCTAGGA 60.547 55.000 11.48 0.00 0.00 2.94
2762 7044 0.392998 GTGTCATGTGTGGCCCTAGG 60.393 60.000 0.06 0.06 0.00 3.02
2763 7045 0.324614 TGTGTCATGTGTGGCCCTAG 59.675 55.000 0.00 0.00 0.00 3.02
2764 7046 0.991146 ATGTGTCATGTGTGGCCCTA 59.009 50.000 0.00 0.00 0.00 3.53
2765 7047 0.112995 AATGTGTCATGTGTGGCCCT 59.887 50.000 0.00 0.00 0.00 5.19
2766 7048 0.968405 AAATGTGTCATGTGTGGCCC 59.032 50.000 0.00 0.00 0.00 5.80
2767 7049 4.202010 GGTATAAATGTGTCATGTGTGGCC 60.202 45.833 0.00 0.00 0.00 5.36
2768 7050 4.397730 TGGTATAAATGTGTCATGTGTGGC 59.602 41.667 0.00 0.00 0.00 5.01
2769 7051 6.698008 ATGGTATAAATGTGTCATGTGTGG 57.302 37.500 0.00 0.00 0.00 4.17
2770 7052 9.882996 GAATATGGTATAAATGTGTCATGTGTG 57.117 33.333 0.00 0.00 0.00 3.82
2771 7053 9.851686 AGAATATGGTATAAATGTGTCATGTGT 57.148 29.630 0.00 0.00 0.00 3.72
2773 7055 9.507329 GGAGAATATGGTATAAATGTGTCATGT 57.493 33.333 0.00 0.00 0.00 3.21
2774 7056 9.730705 AGGAGAATATGGTATAAATGTGTCATG 57.269 33.333 0.00 0.00 0.00 3.07
2775 7057 9.730705 CAGGAGAATATGGTATAAATGTGTCAT 57.269 33.333 0.00 0.00 0.00 3.06
2776 7058 8.713971 ACAGGAGAATATGGTATAAATGTGTCA 58.286 33.333 0.00 0.00 0.00 3.58
2777 7059 9.561069 AACAGGAGAATATGGTATAAATGTGTC 57.439 33.333 0.00 0.00 0.00 3.67
2907 7191 3.616560 GCTTTATGAGATTATCGGCCGGA 60.617 47.826 27.83 12.89 0.00 5.14
2910 7194 4.937620 TCATGCTTTATGAGATTATCGGCC 59.062 41.667 0.00 0.00 40.82 6.13
2913 7197 7.170489 AGTGTGTCATGCTTTATGAGATTATCG 59.830 37.037 0.00 0.00 46.09 2.92
2921 7205 7.559486 AGAGAATAGTGTGTCATGCTTTATGA 58.441 34.615 0.00 0.00 43.40 2.15
2922 7206 7.783090 AGAGAATAGTGTGTCATGCTTTATG 57.217 36.000 0.00 0.00 38.17 1.90
2923 7207 9.486497 CATAGAGAATAGTGTGTCATGCTTTAT 57.514 33.333 0.00 0.00 0.00 1.40
2924 7208 8.695456 TCATAGAGAATAGTGTGTCATGCTTTA 58.305 33.333 0.00 0.00 0.00 1.85
2925 7209 7.559486 TCATAGAGAATAGTGTGTCATGCTTT 58.441 34.615 0.00 0.00 0.00 3.51
2966 7250 5.177327 TGGAACGTTTATTGAACTACCGAAC 59.823 40.000 0.46 0.00 36.06 3.95
2969 7253 5.789710 ATGGAACGTTTATTGAACTACCG 57.210 39.130 0.46 0.00 36.06 4.02
3171 7455 3.509740 CATACTCTAGATCATGGCGCAG 58.490 50.000 10.83 0.00 0.00 5.18
3189 7473 6.588719 AAACTGAGCATTAAACCAAGCATA 57.411 33.333 0.00 0.00 0.00 3.14
3490 7776 9.391006 GGATAACAAATTACACAGACCAGATAA 57.609 33.333 0.00 0.00 0.00 1.75
3628 7914 4.950205 TTTGGATCGGAGGGAGTATTAC 57.050 45.455 0.00 0.00 0.00 1.89
4016 8317 1.135460 ACTACGTGCTTCCGCTAAGTC 60.135 52.381 0.00 0.00 37.53 3.01
4314 8616 3.126001 TCCTGACAAGATTGCTCGTTT 57.874 42.857 0.00 0.00 0.00 3.60
4353 8673 1.541588 GACCATTGCCTGAGTGGTTTC 59.458 52.381 0.00 0.00 45.79 2.78
4373 8693 0.035881 TCAAGCCTGAGTGCCTTCAG 59.964 55.000 7.41 7.41 43.35 3.02
4414 8734 5.854866 CCAATCATTAAGATAACATGCGCTG 59.145 40.000 9.73 7.16 35.39 5.18
4507 8827 8.087750 CCATTAAGTAAAACTGAGCATGGAAAA 58.912 33.333 0.00 0.00 0.00 2.29
4570 8890 0.391661 CCATGGGACGGAAGACACAG 60.392 60.000 2.85 0.00 43.43 3.66
4675 8998 4.385358 TTCCTCCAAAGCAAAAGAACAC 57.615 40.909 0.00 0.00 0.00 3.32
4780 9103 9.231297 CTCTTTATAACCTCCAGATTTTCACAA 57.769 33.333 0.00 0.00 0.00 3.33
5000 9323 2.429610 TCGCCAGTAATAACCCAGAGTC 59.570 50.000 0.00 0.00 0.00 3.36
5084 9407 0.890683 GTGGAGGAATTTGCCAGGTG 59.109 55.000 0.00 0.00 31.18 4.00
5154 9477 8.794335 AAACCAGAGAAAAGTAATCATAGTCC 57.206 34.615 0.00 0.00 0.00 3.85
5222 9545 5.245531 TGGGAAGATGAACATGACTTACAC 58.754 41.667 0.00 0.00 0.00 2.90
5416 9740 3.708403 TCTTCACATCCTTGATGCTGT 57.292 42.857 4.05 0.00 43.15 4.40
5443 9767 1.881973 TGCTTTTCGCAGAGCAGAAAT 59.118 42.857 0.00 0.00 45.47 2.17
5507 9831 1.185618 TGTCCAGTGTAAGGCGCTCT 61.186 55.000 7.64 0.00 35.42 4.09
5612 9936 3.382227 TGTAACTTCTCACAACCACGAGA 59.618 43.478 0.00 0.00 36.50 4.04
5804 10128 6.795098 AACGAAGCACAAAACATATACAGA 57.205 33.333 0.00 0.00 0.00 3.41
5819 10143 6.665474 TTAAAACAGTAGTGAAACGAAGCA 57.335 33.333 4.09 0.00 45.86 3.91
5851 10175 4.887748 AGATGAAATAATCGGCAGATCGT 58.112 39.130 0.00 0.00 35.74 3.73
5878 10202 6.798315 TGAGACGGTTCTATAGCACTATAC 57.202 41.667 2.51 0.00 29.47 1.47
5912 10236 1.683025 TCATGGCACTGGCATTGGG 60.683 57.895 15.20 5.34 46.61 4.12
5920 10244 1.626654 GAACGACCGTCATGGCACTG 61.627 60.000 0.00 0.00 43.94 3.66
5974 10303 9.869757 GGTGAAATATGTTTAGGCATTTACTTT 57.130 29.630 0.00 0.00 0.00 2.66
5975 10304 9.255029 AGGTGAAATATGTTTAGGCATTTACTT 57.745 29.630 0.00 0.00 0.00 2.24
5976 10305 8.823220 AGGTGAAATATGTTTAGGCATTTACT 57.177 30.769 0.00 0.00 0.00 2.24
5977 10306 9.301153 CAAGGTGAAATATGTTTAGGCATTTAC 57.699 33.333 0.00 0.00 0.00 2.01
6064 10393 2.785269 TCAGGCAGTTATCCCATGGATT 59.215 45.455 15.22 2.02 39.79 3.01
6158 10487 7.697352 TGAAACTGCAACACATTTTCTTATG 57.303 32.000 9.10 0.00 44.25 1.90
6170 10499 6.486320 TCTCAATCTAACATGAAACTGCAACA 59.514 34.615 0.00 0.00 0.00 3.33
6220 10550 2.152016 GTTAAGTCACAAGTCAGGCCC 58.848 52.381 0.00 0.00 0.00 5.80
6312 10648 0.903454 TCTCCCCCGTTCAGTTCTCC 60.903 60.000 0.00 0.00 0.00 3.71
6313 10649 0.246910 GTCTCCCCCGTTCAGTTCTC 59.753 60.000 0.00 0.00 0.00 2.87
6314 10650 0.471211 TGTCTCCCCCGTTCAGTTCT 60.471 55.000 0.00 0.00 0.00 3.01
6315 10651 0.613777 ATGTCTCCCCCGTTCAGTTC 59.386 55.000 0.00 0.00 0.00 3.01
6318 10654 2.200373 AAAATGTCTCCCCCGTTCAG 57.800 50.000 0.00 0.00 0.00 3.02
6545 10887 9.626045 GTGTATAAAACTTGCAGAGCTTTATTT 57.374 29.630 15.79 3.62 37.63 1.40
6591 10933 0.537143 CCAGTGGTTGCTGCTACCAA 60.537 55.000 31.85 16.76 46.62 3.67
6595 10937 0.253044 GGATCCAGTGGTTGCTGCTA 59.747 55.000 9.54 0.00 35.28 3.49
6658 11000 1.980765 TCCTGCTTGATCACCTCAGTT 59.019 47.619 13.69 0.00 34.68 3.16
6660 11002 1.743091 GCTCCTGCTTGATCACCTCAG 60.743 57.143 0.00 3.01 34.68 3.35
6663 11005 0.917533 ATGCTCCTGCTTGATCACCT 59.082 50.000 0.00 0.00 40.48 4.00
6670 11012 0.896940 AACCCACATGCTCCTGCTTG 60.897 55.000 0.00 0.00 46.02 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.