Multiple sequence alignment - TraesCS3D01G119100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G119100 chr3D 100.000 8603 0 0 1 8603 73757646 73766248 0.000000e+00 15887.0
1 TraesCS3D01G119100 chr3D 78.415 1603 269 49 1866 3413 43781238 43782818 0.000000e+00 972.0
2 TraesCS3D01G119100 chr3D 85.131 343 46 5 7271 7609 43786256 43786597 6.390000e-91 346.0
3 TraesCS3D01G119100 chr3D 97.452 157 4 0 1 157 17774922 17775078 1.420000e-67 268.0
4 TraesCS3D01G119100 chr3D 95.783 166 7 0 1 166 591523526 591523361 1.420000e-67 268.0
5 TraesCS3D01G119100 chr3D 85.000 240 34 2 4835 5072 374362650 374362889 8.630000e-60 243.0
6 TraesCS3D01G119100 chr3D 81.879 298 43 5 3861 4153 43783319 43783610 3.100000e-59 241.0
7 TraesCS3D01G119100 chr3D 95.455 44 2 0 357 400 73757966 73758009 4.310000e-08 71.3
8 TraesCS3D01G119100 chr3D 95.455 44 2 0 321 364 73758002 73758045 4.310000e-08 71.3
9 TraesCS3D01G119100 chr3A 92.110 4854 302 41 3779 8598 86626618 86631424 0.000000e+00 6767.0
10 TraesCS3D01G119100 chr3A 93.171 2958 155 25 815 3743 86623676 86626615 0.000000e+00 4300.0
11 TraesCS3D01G119100 chr3A 79.079 1434 252 34 2019 3413 55563414 55561990 0.000000e+00 942.0
12 TraesCS3D01G119100 chr3A 91.009 545 42 4 156 694 86622793 86623336 0.000000e+00 728.0
13 TraesCS3D01G119100 chr3A 84.503 342 48 5 7273 7610 55558543 55558203 4.980000e-87 333.0
14 TraesCS3D01G119100 chr3A 76.306 536 99 17 3767 4290 55561582 55561063 2.380000e-65 261.0
15 TraesCS3D01G119100 chr3A 76.119 536 100 17 3767 4290 55603334 55602815 1.110000e-63 255.0
16 TraesCS3D01G119100 chr3A 76.119 536 100 17 3767 4290 55605057 55604538 1.110000e-63 255.0
17 TraesCS3D01G119100 chr3A 85.841 226 25 5 4835 5055 87376181 87376404 5.190000e-57 233.0
18 TraesCS3D01G119100 chr3A 96.364 55 2 0 7199 7253 86630072 86630126 3.310000e-14 91.6
19 TraesCS3D01G119100 chr3B 91.085 3937 284 38 3360 7253 119086053 119089965 0.000000e+00 5264.0
20 TraesCS3D01G119100 chr3B 91.053 2839 199 31 3360 6154 136487677 136484850 0.000000e+00 3784.0
21 TraesCS3D01G119100 chr3B 93.274 2245 122 12 1140 3361 119083569 119085807 0.000000e+00 3282.0
22 TraesCS3D01G119100 chr3B 93.186 2216 123 12 1168 3361 136490132 136487923 0.000000e+00 3230.0
23 TraesCS3D01G119100 chr3B 92.189 1357 84 15 7252 8595 119089910 119091257 0.000000e+00 1899.0
24 TraesCS3D01G119100 chr3B 78.926 1452 248 41 1948 3353 68403990 68402551 0.000000e+00 933.0
25 TraesCS3D01G119100 chr3B 92.330 339 21 3 465 802 119082399 119082733 2.170000e-130 477.0
26 TraesCS3D01G119100 chr3B 89.552 335 21 5 156 488 119082061 119082383 6.210000e-111 412.0
27 TraesCS3D01G119100 chr3B 90.559 286 12 5 866 1142 119083242 119083521 1.760000e-96 364.0
28 TraesCS3D01G119100 chr3B 83.202 381 58 6 7271 7647 68399097 68398719 2.300000e-90 344.0
29 TraesCS3D01G119100 chr3B 77.753 445 77 16 3861 4293 68402000 68401566 3.990000e-63 254.0
30 TraesCS3D01G119100 chrUn 82.028 562 92 8 2623 3180 471931005 471931561 3.640000e-128 470.0
31 TraesCS3D01G119100 chrUn 83.646 373 56 5 7273 7641 381219411 381219782 6.390000e-91 346.0
32 TraesCS3D01G119100 chr6D 98.125 160 3 0 1 160 8643514 8643673 6.580000e-71 279.0
33 TraesCS3D01G119100 chr6D 97.500 160 4 0 1 160 150071260 150071419 3.060000e-69 274.0
34 TraesCS3D01G119100 chr6D 85.124 242 31 5 4835 5073 433481160 433481399 8.630000e-60 243.0
35 TraesCS3D01G119100 chr2D 96.471 170 3 2 2 168 600129874 600130043 2.370000e-70 278.0
36 TraesCS3D01G119100 chr2D 96.951 164 5 0 1 164 615501660 615501823 8.510000e-70 276.0
37 TraesCS3D01G119100 chr1D 98.101 158 3 0 1 158 49191428 49191585 8.510000e-70 276.0
38 TraesCS3D01G119100 chr7D 97.500 160 4 0 1 160 46744239 46744080 3.060000e-69 274.0
39 TraesCS3D01G119100 chr7D 82.960 223 31 5 4835 5051 630796036 630795815 2.450000e-45 195.0
40 TraesCS3D01G119100 chr5D 96.341 164 6 0 1 164 497314316 497314479 3.960000e-68 270.0
41 TraesCS3D01G119100 chr2B 84.836 244 32 5 4835 5076 770489168 770488928 3.100000e-59 241.0
42 TraesCS3D01G119100 chr6B 84.232 241 34 4 4835 5073 654737424 654737662 1.870000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G119100 chr3D 73757646 73766248 8602 False 15887.000000 15887 100.000000 1 8603 1 chr3D.!!$F2 8602
1 TraesCS3D01G119100 chr3D 43781238 43786597 5359 False 519.666667 972 81.808333 1866 7609 3 chr3D.!!$F4 5743
2 TraesCS3D01G119100 chr3A 86622793 86631424 8631 False 2971.650000 6767 93.163500 156 8598 4 chr3A.!!$F2 8442
3 TraesCS3D01G119100 chr3A 55558203 55563414 5211 True 512.000000 942 79.962667 2019 7610 3 chr3A.!!$R1 5591
4 TraesCS3D01G119100 chr3A 55602815 55605057 2242 True 255.000000 255 76.119000 3767 4290 2 chr3A.!!$R2 523
5 TraesCS3D01G119100 chr3B 136484850 136490132 5282 True 3507.000000 3784 92.119500 1168 6154 2 chr3B.!!$R2 4986
6 TraesCS3D01G119100 chr3B 119082061 119091257 9196 False 1949.666667 5264 91.498167 156 8595 6 chr3B.!!$F1 8439
7 TraesCS3D01G119100 chr3B 68398719 68403990 5271 True 510.333333 933 79.960333 1948 7647 3 chr3B.!!$R1 5699
8 TraesCS3D01G119100 chrUn 471931005 471931561 556 False 470.000000 470 82.028000 2623 3180 1 chrUn.!!$F2 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.035820 TGGAACCGGCACTAATGGAC 60.036 55.000 0.00 0.00 0.00 4.02 F
89 90 0.035820 GGAACCGGCACTAATGGACA 60.036 55.000 0.00 0.00 0.00 4.02 F
771 1054 0.251832 TCTCTCTTTGCTCCGGACCT 60.252 55.000 0.00 0.00 0.00 3.85 F
1619 2449 0.252513 GGCCCAAAATACAAGGGGGT 60.253 55.000 0.00 0.00 43.04 4.95 F
3139 4019 0.238553 GCAGAAACTCAAAGTCGGGC 59.761 55.000 0.00 0.00 0.00 6.13 F
3845 5073 1.358877 TCGTCATGGAGCGATGTTTG 58.641 50.000 0.00 0.00 31.76 2.93 F
4876 6174 1.134175 AGGCCACTTGTTTTTCGTGTG 59.866 47.619 5.01 0.00 0.00 3.82 F
6002 7358 1.683917 TGTGTACATTGTGTTTGGGGC 59.316 47.619 0.00 0.00 0.00 5.80 F
6026 7384 0.744874 GGGCTCTAGTGTGCGTATCA 59.255 55.000 0.00 0.00 33.89 2.15 F
6991 8621 1.066215 GTGGGGCCCATGAAAAATGTC 60.066 52.381 31.48 7.74 35.28 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 2260 1.199789 GGCTCGAAATGTGAATGTGCA 59.800 47.619 0.00 0.00 0.00 4.57 R
1446 2275 1.737793 GTATGGTCAAACTTGGGCTCG 59.262 52.381 0.00 0.00 0.00 5.03 R
1630 2460 1.751924 GCATTGTACTCTCTCCGTCCT 59.248 52.381 0.00 0.00 0.00 3.85 R
3516 4722 1.071471 CGCCATGAGGACATACCCC 59.929 63.158 0.00 0.00 40.05 4.95 R
4544 5787 0.251165 CCGGGGCCACATAATAAGGG 60.251 60.000 5.46 0.00 0.00 3.95 R
5173 6490 0.173255 ACCGTTATCACCCGTAACCG 59.827 55.000 0.00 0.00 0.00 4.44 R
6006 7362 0.317938 GATACGCACACTAGAGCCCG 60.318 60.000 0.00 0.00 0.00 6.13 R
6915 8543 1.071385 CCTAGGTCAGGCATGCTTAGG 59.929 57.143 18.92 9.45 37.70 2.69 R
7012 8642 1.071471 ATACCCACATAGCAGCCGC 59.929 57.895 0.00 0.00 38.99 6.53 R
8241 10108 1.210155 GCAGTTGCACGGGTTGATC 59.790 57.895 0.00 0.00 41.59 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.159181 CACGAACCGGTGCTAAAGG 58.841 57.895 8.52 0.00 0.00 3.11
27 28 0.601841 CACGAACCGGTGCTAAAGGT 60.602 55.000 8.52 0.00 40.50 3.50
28 29 0.320160 ACGAACCGGTGCTAAAGGTC 60.320 55.000 8.52 0.00 37.26 3.85
29 30 1.349259 CGAACCGGTGCTAAAGGTCG 61.349 60.000 8.52 7.35 37.26 4.79
30 31 1.004200 AACCGGTGCTAAAGGTCGG 60.004 57.895 8.52 0.00 45.42 4.79
31 32 2.818274 CCGGTGCTAAAGGTCGGC 60.818 66.667 0.00 0.00 34.17 5.54
32 33 2.818274 CGGTGCTAAAGGTCGGCC 60.818 66.667 0.00 0.00 0.00 6.13
33 34 2.349755 GGTGCTAAAGGTCGGCCA 59.650 61.111 9.71 0.00 37.19 5.36
34 35 2.038837 GGTGCTAAAGGTCGGCCAC 61.039 63.158 9.71 0.00 37.19 5.01
35 36 2.047655 TGCTAAAGGTCGGCCACG 60.048 61.111 9.71 0.00 42.74 4.94
46 47 3.287445 GGCCACGAACCGGTACTA 58.713 61.111 8.00 0.00 0.00 1.82
47 48 1.591183 GGCCACGAACCGGTACTAA 59.409 57.895 8.00 0.00 0.00 2.24
48 49 0.176449 GGCCACGAACCGGTACTAAT 59.824 55.000 8.00 0.00 0.00 1.73
49 50 1.283736 GCCACGAACCGGTACTAATG 58.716 55.000 8.00 2.10 0.00 1.90
50 51 1.135024 GCCACGAACCGGTACTAATGA 60.135 52.381 8.00 0.00 0.00 2.57
51 52 2.482490 GCCACGAACCGGTACTAATGAT 60.482 50.000 8.00 0.00 0.00 2.45
52 53 3.243501 GCCACGAACCGGTACTAATGATA 60.244 47.826 8.00 0.00 0.00 2.15
53 54 4.543692 CCACGAACCGGTACTAATGATAG 58.456 47.826 8.00 0.00 35.14 2.08
54 55 3.979495 CACGAACCGGTACTAATGATAGC 59.021 47.826 8.00 0.00 31.96 2.97
55 56 3.231965 CGAACCGGTACTAATGATAGCG 58.768 50.000 8.00 0.00 41.87 4.26
58 59 1.992170 CGGTACTAATGATAGCGGCC 58.008 55.000 0.00 0.00 39.30 6.13
59 60 1.731424 CGGTACTAATGATAGCGGCCG 60.731 57.143 24.05 24.05 39.30 6.13
60 61 1.403780 GGTACTAATGATAGCGGCCGG 60.404 57.143 29.38 9.17 31.96 6.13
61 62 0.245539 TACTAATGATAGCGGCCGGC 59.754 55.000 29.38 21.18 44.05 6.13
76 77 2.818274 GGCTAGCCGTTGGAACCG 60.818 66.667 20.16 0.00 0.00 4.44
82 83 2.344500 CCGTTGGAACCGGCACTA 59.656 61.111 0.00 0.00 38.85 2.74
83 84 1.301874 CCGTTGGAACCGGCACTAA 60.302 57.895 0.00 0.00 38.85 2.24
84 85 0.675522 CCGTTGGAACCGGCACTAAT 60.676 55.000 0.00 0.00 38.85 1.73
85 86 0.446222 CGTTGGAACCGGCACTAATG 59.554 55.000 0.00 1.62 0.00 1.90
86 87 0.808755 GTTGGAACCGGCACTAATGG 59.191 55.000 0.00 0.00 0.00 3.16
87 88 0.693622 TTGGAACCGGCACTAATGGA 59.306 50.000 0.00 0.00 0.00 3.41
88 89 0.035820 TGGAACCGGCACTAATGGAC 60.036 55.000 0.00 0.00 0.00 4.02
89 90 0.035820 GGAACCGGCACTAATGGACA 60.036 55.000 0.00 0.00 0.00 4.02
90 91 1.084289 GAACCGGCACTAATGGACAC 58.916 55.000 0.00 0.00 0.00 3.67
91 92 0.398696 AACCGGCACTAATGGACACA 59.601 50.000 0.00 0.00 0.00 3.72
92 93 0.618458 ACCGGCACTAATGGACACAT 59.382 50.000 0.00 0.00 39.54 3.21
94 95 2.237643 ACCGGCACTAATGGACACATTA 59.762 45.455 0.00 0.00 45.17 1.90
105 106 4.615901 CACATTAGTGCCGGCTCA 57.384 55.556 29.70 9.72 39.21 4.26
106 107 2.853159 CACATTAGTGCCGGCTCAA 58.147 52.632 29.70 19.77 39.21 3.02
107 108 1.164411 CACATTAGTGCCGGCTCAAA 58.836 50.000 29.70 18.42 39.21 2.69
108 109 1.539388 CACATTAGTGCCGGCTCAAAA 59.461 47.619 29.70 21.42 39.21 2.44
109 110 1.812571 ACATTAGTGCCGGCTCAAAAG 59.187 47.619 29.70 16.92 0.00 2.27
120 121 2.885502 CTCAAAAGCAAACCGGCAC 58.114 52.632 0.00 0.00 35.83 5.01
121 122 0.385390 CTCAAAAGCAAACCGGCACT 59.615 50.000 0.00 0.00 35.83 4.40
122 123 1.606668 CTCAAAAGCAAACCGGCACTA 59.393 47.619 0.00 0.00 35.83 2.74
123 124 2.025155 TCAAAAGCAAACCGGCACTAA 58.975 42.857 0.00 0.00 35.83 2.24
124 125 2.625790 TCAAAAGCAAACCGGCACTAAT 59.374 40.909 0.00 0.00 35.83 1.73
125 126 2.723124 AAAGCAAACCGGCACTAATG 57.277 45.000 0.00 0.00 35.83 1.90
126 127 1.616159 AAGCAAACCGGCACTAATGT 58.384 45.000 0.00 0.00 35.83 2.71
127 128 0.881118 AGCAAACCGGCACTAATGTG 59.119 50.000 0.00 0.00 46.37 3.21
142 143 2.995466 ATGTGCTTGACATTTGACCG 57.005 45.000 0.00 0.00 43.20 4.79
143 144 1.674359 TGTGCTTGACATTTGACCGT 58.326 45.000 0.00 0.00 0.00 4.83
144 145 2.020720 TGTGCTTGACATTTGACCGTT 58.979 42.857 0.00 0.00 0.00 4.44
145 146 2.425312 TGTGCTTGACATTTGACCGTTT 59.575 40.909 0.00 0.00 0.00 3.60
146 147 3.119316 TGTGCTTGACATTTGACCGTTTT 60.119 39.130 0.00 0.00 0.00 2.43
147 148 3.862845 GTGCTTGACATTTGACCGTTTTT 59.137 39.130 0.00 0.00 0.00 1.94
148 149 4.026886 GTGCTTGACATTTGACCGTTTTTC 60.027 41.667 0.00 0.00 0.00 2.29
149 150 4.142271 TGCTTGACATTTGACCGTTTTTCT 60.142 37.500 0.00 0.00 0.00 2.52
150 151 5.066634 TGCTTGACATTTGACCGTTTTTCTA 59.933 36.000 0.00 0.00 0.00 2.10
151 152 5.398416 GCTTGACATTTGACCGTTTTTCTAC 59.602 40.000 0.00 0.00 0.00 2.59
152 153 6.687081 TTGACATTTGACCGTTTTTCTACT 57.313 33.333 0.00 0.00 0.00 2.57
153 154 7.519328 GCTTGACATTTGACCGTTTTTCTACTA 60.519 37.037 0.00 0.00 0.00 1.82
154 155 7.416154 TGACATTTGACCGTTTTTCTACTAG 57.584 36.000 0.00 0.00 0.00 2.57
165 166 6.387465 CGTTTTTCTACTAGTGAGACATGGA 58.613 40.000 5.39 0.00 0.00 3.41
214 215 1.804372 CGGCTTCTCTTAAGCATCGCT 60.804 52.381 11.47 0.00 44.71 4.93
282 283 1.961180 GCTATGAGGGCGACACACCT 61.961 60.000 0.00 0.00 40.54 4.00
405 411 4.122776 CTGGTGCCACAAGTCTCATATAC 58.877 47.826 0.00 0.00 0.00 1.47
454 460 9.578439 GGATCCAATTGTTTTCTGAGAAAATAG 57.422 33.333 21.69 8.84 0.00 1.73
510 556 6.421377 TCTCATGTATCCACAACATTTTCG 57.579 37.500 0.00 0.00 38.42 3.46
550 596 3.501828 TGTCACCAAGTTCCAATGAATCG 59.498 43.478 0.00 0.00 31.98 3.34
588 634 6.602179 TGCTATTGTTTTGAAGATCTTGTCG 58.398 36.000 14.00 0.00 0.00 4.35
591 637 2.223144 TGTTTTGAAGATCTTGTCGCCG 59.777 45.455 14.00 0.00 0.00 6.46
625 671 6.387041 TGTTAGACGGATCGTAGATTCAAT 57.613 37.500 0.00 0.00 45.12 2.57
630 676 6.153067 AGACGGATCGTAGATTCAATTGATC 58.847 40.000 9.40 9.05 45.12 2.92
687 735 0.932211 TAGACCAGGTACTCCTCCCC 59.068 60.000 0.00 0.00 43.07 4.81
688 736 1.757340 GACCAGGTACTCCTCCCCG 60.757 68.421 0.00 0.00 43.07 5.73
700 748 4.758251 TCCCCGCGCATGTGTGAG 62.758 66.667 21.06 7.93 0.00 3.51
712 760 3.233980 TGTGAGCCGGCTGTGAGT 61.234 61.111 38.41 9.08 0.00 3.41
748 797 8.328758 CAGGCCCAGAACTAATCCATTATATTA 58.671 37.037 0.00 0.00 0.00 0.98
769 1052 2.457366 TTTCTCTCTTTGCTCCGGAC 57.543 50.000 0.00 0.00 0.00 4.79
771 1054 0.251832 TCTCTCTTTGCTCCGGACCT 60.252 55.000 0.00 0.00 0.00 3.85
782 1065 2.350522 CTCCGGACCTGACTTGATTTG 58.649 52.381 0.00 0.00 0.00 2.32
802 1085 3.460103 TGTAAACGTTGAACCCTGAGAC 58.540 45.455 0.00 0.00 0.00 3.36
803 1086 1.578583 AAACGTTGAACCCTGAGACG 58.421 50.000 0.00 0.00 39.43 4.18
804 1087 0.748450 AACGTTGAACCCTGAGACGA 59.252 50.000 0.00 0.00 37.20 4.20
805 1088 0.966920 ACGTTGAACCCTGAGACGAT 59.033 50.000 0.94 0.00 37.20 3.73
806 1089 1.336887 ACGTTGAACCCTGAGACGATG 60.337 52.381 0.94 0.00 37.20 3.84
807 1090 1.079503 GTTGAACCCTGAGACGATGC 58.920 55.000 0.00 0.00 0.00 3.91
808 1091 0.684535 TTGAACCCTGAGACGATGCA 59.315 50.000 0.00 0.00 0.00 3.96
809 1092 0.684535 TGAACCCTGAGACGATGCAA 59.315 50.000 0.00 0.00 0.00 4.08
810 1093 1.071542 TGAACCCTGAGACGATGCAAA 59.928 47.619 0.00 0.00 0.00 3.68
811 1094 2.290260 TGAACCCTGAGACGATGCAAAT 60.290 45.455 0.00 0.00 0.00 2.32
812 1095 3.055458 TGAACCCTGAGACGATGCAAATA 60.055 43.478 0.00 0.00 0.00 1.40
813 1096 3.185246 ACCCTGAGACGATGCAAATAG 57.815 47.619 0.00 0.00 0.00 1.73
814 1097 2.501723 ACCCTGAGACGATGCAAATAGT 59.498 45.455 0.00 0.00 0.00 2.12
815 1098 2.868583 CCCTGAGACGATGCAAATAGTG 59.131 50.000 0.00 0.00 0.00 2.74
816 1099 3.430790 CCCTGAGACGATGCAAATAGTGA 60.431 47.826 0.00 0.00 0.00 3.41
817 1100 3.801050 CCTGAGACGATGCAAATAGTGAG 59.199 47.826 0.00 0.00 0.00 3.51
818 1101 3.785486 TGAGACGATGCAAATAGTGAGG 58.215 45.455 0.00 0.00 0.00 3.86
833 1116 4.877378 AGTGAGGGTTGATACGTACAAA 57.123 40.909 0.00 0.00 0.00 2.83
838 1121 5.011329 TGAGGGTTGATACGTACAAAGACTT 59.989 40.000 0.00 0.00 0.00 3.01
849 1604 9.784680 ATACGTACAAAGACTTCATGTTACTAG 57.215 33.333 0.00 0.00 0.00 2.57
852 1607 9.616634 CGTACAAAGACTTCATGTTACTAGTAA 57.383 33.333 11.38 11.38 0.00 2.24
898 1653 5.592104 ACCAACAAAAGGACAAAAGGTAG 57.408 39.130 0.00 0.00 0.00 3.18
907 1662 2.549349 GGACAAAAGGTAGAAGTCGGCA 60.549 50.000 0.00 0.00 0.00 5.69
943 1712 0.830648 TACCAGCACCTCCACATAGC 59.169 55.000 0.00 0.00 0.00 2.97
948 1717 1.089920 GCACCTCCACATAGCACTTG 58.910 55.000 0.00 0.00 0.00 3.16
951 1721 3.411446 CACCTCCACATAGCACTTGAAA 58.589 45.455 0.00 0.00 0.00 2.69
999 1770 8.611757 CGAATCATTGTATATCCAAACAACTCA 58.388 33.333 0.00 0.00 38.35 3.41
1222 2043 4.450976 TGCATGACATCGGCTTATTTAGT 58.549 39.130 0.00 0.00 0.00 2.24
1223 2044 4.273235 TGCATGACATCGGCTTATTTAGTG 59.727 41.667 0.00 0.00 0.00 2.74
1226 2047 6.293626 GCATGACATCGGCTTATTTAGTGAAT 60.294 38.462 0.00 0.00 0.00 2.57
1258 2079 3.751175 TGACTTCTAATTTGCCGAACCAG 59.249 43.478 0.00 0.00 0.00 4.00
1259 2080 3.081804 ACTTCTAATTTGCCGAACCAGG 58.918 45.455 0.00 0.00 0.00 4.45
1354 2175 5.587289 ACTCATGATTTAGCTCTTCTCGTC 58.413 41.667 0.00 0.00 0.00 4.20
1404 2233 8.836109 CACGTTGTACACACAAAATACAATATG 58.164 33.333 0.00 0.00 45.99 1.78
1431 2260 3.033184 TCCCTCCGTCCGTGTTTATTAT 58.967 45.455 0.00 0.00 0.00 1.28
1446 2275 8.313227 CGTGTTTATTATGCACATTCACATTTC 58.687 33.333 0.00 0.00 33.70 2.17
1515 2344 5.375417 TGTAGCAAAATGGTGTCATTGAG 57.625 39.130 0.00 0.00 42.29 3.02
1530 2359 6.860023 GTGTCATTGAGAACTTCCTTTGAATG 59.140 38.462 0.00 0.00 0.00 2.67
1532 2361 5.535783 TCATTGAGAACTTCCTTTGAATGCA 59.464 36.000 0.00 0.00 0.00 3.96
1537 2366 8.125978 TGAGAACTTCCTTTGAATGCAAATAT 57.874 30.769 0.00 0.00 42.66 1.28
1541 2370 8.687824 AACTTCCTTTGAATGCAAATATAACG 57.312 30.769 0.00 0.00 42.66 3.18
1619 2449 0.252513 GGCCCAAAATACAAGGGGGT 60.253 55.000 0.00 0.00 43.04 4.95
1630 2460 6.661740 AATACAAGGGGGTCTAATAAACCA 57.338 37.500 0.00 0.00 38.62 3.67
1639 2469 3.703052 GGTCTAATAAACCAGGACGGAGA 59.297 47.826 0.00 0.00 38.63 3.71
1732 2562 3.622612 ACAGCTTTCAACAAACAAATGCC 59.377 39.130 0.00 0.00 0.00 4.40
1760 2590 4.078537 ACACCCATGATTTGTTTCGATGA 58.921 39.130 0.00 0.00 0.00 2.92
2017 2855 4.431809 CAAGAGTTGCACACCATTTGAAA 58.568 39.130 0.00 0.00 0.00 2.69
2060 2902 6.978338 CAACTGCCTCATTGCATATTTCTAT 58.022 36.000 0.00 0.00 41.16 1.98
2112 2955 7.471721 TGTTTAGCTATCCAAATTTCATCACG 58.528 34.615 0.00 0.00 0.00 4.35
2114 2957 7.624360 TTAGCTATCCAAATTTCATCACGTT 57.376 32.000 0.00 0.00 0.00 3.99
2119 2962 8.128582 GCTATCCAAATTTCATCACGTTGATAA 58.871 33.333 0.00 0.00 34.28 1.75
2582 3447 4.755266 TCTGGTAAGGCCTCATAAACTC 57.245 45.455 5.23 0.00 38.35 3.01
2692 3568 6.933521 TCAAGACAGAGAAGGAGATTTCTTTG 59.066 38.462 5.16 5.16 42.12 2.77
2697 3573 6.883756 ACAGAGAAGGAGATTTCTTTGAATCC 59.116 38.462 11.69 0.00 40.08 3.01
2826 3702 4.493545 GCGTTAGTACATTTGGAATCACCG 60.494 45.833 0.00 0.00 42.61 4.94
2850 3726 3.230976 TGTAGAGGAAGTGTCTTCTGCA 58.769 45.455 8.96 3.17 45.87 4.41
3139 4019 0.238553 GCAGAAACTCAAAGTCGGGC 59.761 55.000 0.00 0.00 0.00 6.13
3294 4174 5.903010 TGACATATTGGACACCTATGGTAGT 59.097 40.000 0.00 0.00 32.11 2.73
3355 4235 4.263771 GGTTAAATCCTCCTTCCCTTCACA 60.264 45.833 0.00 0.00 0.00 3.58
3361 4241 5.179452 TCCTCCTTCCCTTCACAAATTAG 57.821 43.478 0.00 0.00 0.00 1.73
3490 4696 8.798153 CAAACACAAAAGAAATAGTGAAGTGTC 58.202 33.333 0.00 0.00 36.76 3.67
3508 4714 8.194769 TGAAGTGTCGCATTATAAGTAGAATGA 58.805 33.333 9.34 0.00 37.13 2.57
3540 4748 1.423584 ATGTCCTCATGGCGTCCATA 58.576 50.000 10.44 0.00 43.15 2.74
3681 4900 3.637998 ACCTCACACACTAGTTACACG 57.362 47.619 0.00 0.00 0.00 4.49
3683 4902 3.004106 ACCTCACACACTAGTTACACGAC 59.996 47.826 0.00 0.00 0.00 4.34
3743 4962 8.326680 AGTAATTCCATTTTGGCAAGAAAATG 57.673 30.769 13.64 13.64 46.30 2.32
3755 4983 5.184864 TGGCAAGAAAATGTAGTACCATTGG 59.815 40.000 0.00 0.00 35.30 3.16
3758 4986 7.284489 GGCAAGAAAATGTAGTACCATTGGATA 59.716 37.037 10.37 0.00 35.30 2.59
3814 5042 7.887996 AATACACATGCAAACATTAAAGTGG 57.112 32.000 0.00 0.00 33.14 4.00
3845 5073 1.358877 TCGTCATGGAGCGATGTTTG 58.641 50.000 0.00 0.00 31.76 2.93
3869 5097 9.976511 TTGTATAAGATATGAAGGAAAGTACCG 57.023 33.333 0.00 0.00 34.73 4.02
3999 5232 7.545489 AGTAGTAGTTTGGTCTAACATAGTGC 58.455 38.462 0.00 0.00 0.00 4.40
4163 5396 9.821662 GAATCGGCAAGTATTATATTTTACCAC 57.178 33.333 0.00 0.00 0.00 4.16
4450 5692 1.686587 CATGTAGGACTATGCCGACCA 59.313 52.381 0.00 0.00 33.20 4.02
4544 5787 6.339730 TGTCATTATTGCAACAATCCCATTC 58.660 36.000 0.00 0.00 0.00 2.67
4548 5791 2.323999 TGCAACAATCCCATTCCCTT 57.676 45.000 0.00 0.00 0.00 3.95
4750 6041 6.935208 GGTGTACTAAGATTCAAACCAAGTCT 59.065 38.462 0.00 0.00 0.00 3.24
4876 6174 1.134175 AGGCCACTTGTTTTTCGTGTG 59.866 47.619 5.01 0.00 0.00 3.82
4961 6259 6.984740 TTAGAAAGTGCTTTAAAATGTGCG 57.015 33.333 0.00 0.00 32.11 5.34
4966 6264 4.290155 AGTGCTTTAAAATGTGCGTTCAG 58.710 39.130 0.00 0.00 0.00 3.02
4995 6293 8.458843 ACATACTTTTTGTGGCATATAACTCAC 58.541 33.333 0.00 0.00 0.00 3.51
4996 6294 6.892658 ACTTTTTGTGGCATATAACTCACA 57.107 33.333 0.00 0.00 38.21 3.58
5019 6317 8.547069 CACATTTTGTTGGTAAAACTAATGGTG 58.453 33.333 14.86 9.75 32.86 4.17
5124 6434 4.390297 ACTCGTAGAATTTCAAGCTTCTGC 59.610 41.667 0.00 0.00 34.09 4.26
5156 6473 3.914312 AGTGGTGAATAACAGACACTCG 58.086 45.455 0.00 0.00 41.09 4.18
5173 6490 3.125316 CACTCGGGAAGTTAATCTTGTGC 59.875 47.826 0.00 0.00 35.45 4.57
5176 6493 2.433436 GGGAAGTTAATCTTGTGCGGT 58.567 47.619 0.00 0.00 36.40 5.68
5225 6542 2.855180 CAATGCTAAGCTTTGTCACCG 58.145 47.619 3.20 0.00 38.38 4.94
5359 6683 4.922206 TCTTATTCATTTGGGTGACTGCT 58.078 39.130 0.00 0.00 0.00 4.24
5523 6855 7.015292 GGATGTAGGTCATGTGATAAACCTAGA 59.985 40.741 8.57 8.24 43.27 2.43
5529 6861 8.643324 AGGTCATGTGATAAACCTAGATAGTTC 58.357 37.037 0.00 0.00 40.33 3.01
5530 6862 7.595502 GGTCATGTGATAAACCTAGATAGTTCG 59.404 40.741 0.00 0.00 0.00 3.95
5663 7000 9.458374 AAATAGAACACACCTTTAAACATTTCG 57.542 29.630 0.00 0.00 0.00 3.46
5701 7038 7.257722 ACTAACTCACCAATTGACTTTTTGTG 58.742 34.615 7.12 4.76 0.00 3.33
5861 7205 9.651718 GTGCTTCCATTTTACTAGATTTATTCG 57.348 33.333 0.00 0.00 0.00 3.34
5910 7254 4.062991 GTTCCCATCGACTACAAGTTGTT 58.937 43.478 14.90 0.00 31.48 2.83
5996 7352 2.540769 GCACGCTTGTGTACATTGTGTT 60.541 45.455 0.00 0.00 45.65 3.32
5999 7355 3.042189 CGCTTGTGTACATTGTGTTTGG 58.958 45.455 0.00 0.00 0.00 3.28
6002 7358 1.683917 TGTGTACATTGTGTTTGGGGC 59.316 47.619 0.00 0.00 0.00 5.80
6003 7359 1.683917 GTGTACATTGTGTTTGGGGCA 59.316 47.619 0.00 0.00 0.00 5.36
6006 7362 1.004679 CATTGTGTTTGGGGCAGGC 60.005 57.895 0.00 0.00 0.00 4.85
6007 7363 2.573083 ATTGTGTTTGGGGCAGGCG 61.573 57.895 0.00 0.00 0.00 5.52
6026 7384 0.744874 GGGCTCTAGTGTGCGTATCA 59.255 55.000 0.00 0.00 33.89 2.15
6116 7474 7.062255 GGTATTGCTTTTCATGAAACAGTTAGC 59.938 37.037 24.98 24.98 32.64 3.09
6267 7857 8.876275 ATGGACAATGGATAATTTCAATTTCG 57.124 30.769 0.00 0.00 0.00 3.46
6380 7989 9.118236 GTTCAAGAAATTAGTTCAAGCATACAC 57.882 33.333 0.00 0.00 38.86 2.90
6462 8071 7.972832 TGAAGTTTCAACGATAAGTATTGGT 57.027 32.000 0.00 0.00 33.55 3.67
6466 8075 8.475331 AGTTTCAACGATAAGTATTGGTACAG 57.525 34.615 0.00 0.00 42.39 2.74
6623 8236 5.982516 CAGAGGTACACATTCTTAGAGATGC 59.017 44.000 0.00 0.00 0.00 3.91
6633 8246 6.370994 ACATTCTTAGAGATGCACTTGACTTG 59.629 38.462 0.00 0.00 0.00 3.16
6670 8287 1.755959 TGCATCTTGGCAAAGTGTTGT 59.244 42.857 0.00 0.00 41.65 3.32
6674 8291 2.930950 TCTTGGCAAAGTGTTGTAGCT 58.069 42.857 0.00 0.00 37.06 3.32
6679 8296 4.253685 TGGCAAAGTGTTGTAGCTATCTC 58.746 43.478 0.00 0.00 37.06 2.75
6893 8520 9.639601 AACCATTTTAAATCTTGCTTAGCTTAC 57.360 29.630 5.60 0.00 0.00 2.34
6969 8599 2.515854 ACGATGGCATAGGTCGTAGAT 58.484 47.619 11.76 0.00 45.64 1.98
6986 8616 1.929494 AGATAGTGGGGCCCATGAAAA 59.071 47.619 31.48 13.02 35.28 2.29
6991 8621 1.066215 GTGGGGCCCATGAAAAATGTC 60.066 52.381 31.48 7.74 35.28 3.06
7144 8788 0.110486 TCAAGTGAGGAGGGGCAAAC 59.890 55.000 0.00 0.00 0.00 2.93
7189 8833 9.802039 TTTTTAATTTCTTGTAGAGGCCTTCTA 57.198 29.630 6.77 7.30 37.36 2.10
7193 8837 6.435292 TTTCTTGTAGAGGCCTTCTAAACT 57.565 37.500 6.77 0.00 40.04 2.66
7199 8852 2.573915 AGAGGCCTTCTAAACTTCCCTG 59.426 50.000 6.77 0.00 33.23 4.45
7384 9172 0.447801 GGAGCATGCGACGACAAAAT 59.552 50.000 13.01 0.00 0.00 1.82
7557 9345 4.352039 ACGCATACACTAATTCAGAGACG 58.648 43.478 0.00 0.00 0.00 4.18
7623 9411 2.106477 TGTACGAAGCATGCATCCAA 57.894 45.000 21.98 4.04 0.00 3.53
7647 9435 3.128764 GGGGATACAAAAGTAGCAGTTGC 59.871 47.826 0.00 0.00 39.33 4.17
7701 9490 7.496920 TCATGTTAGAATGGTTATCAAGAGCAG 59.503 37.037 0.00 0.00 0.00 4.24
7768 9633 1.291877 AATGTGTCGTGCTCGCTTCC 61.292 55.000 2.69 0.00 36.96 3.46
7769 9634 2.355837 GTGTCGTGCTCGCTTCCA 60.356 61.111 2.69 0.00 36.96 3.53
8000 9865 6.531240 GGTTGCTTGGTGTCATAATTGTATTG 59.469 38.462 0.00 0.00 0.00 1.90
8070 9937 6.486248 CCAACATTGTGATAATACAAGTCCG 58.514 40.000 0.00 0.00 43.14 4.79
8101 9968 0.610687 CCTCCCGCCTAATCCTCATC 59.389 60.000 0.00 0.00 0.00 2.92
8149 10016 7.820872 ATCATAAGATGCATGACAATCGTCATA 59.179 33.333 2.46 0.00 45.62 2.15
8191 10058 8.840321 GTCATAATTAATAGGCATGTCACACTT 58.160 33.333 0.00 0.00 0.00 3.16
8192 10059 8.839343 TCATAATTAATAGGCATGTCACACTTG 58.161 33.333 0.00 0.00 0.00 3.16
8210 10077 5.951747 ACACTTGGCATCAGTATTGGTAATT 59.048 36.000 0.00 0.00 0.00 1.40
8258 10125 0.238289 GTGATCAACCCGTGCAACTG 59.762 55.000 0.00 0.00 31.75 3.16
8275 10142 3.241067 ACTGCAAATGGCTAGCAATTG 57.759 42.857 18.20 17.63 45.15 2.32
8277 10144 3.184541 CTGCAAATGGCTAGCAATTGAC 58.815 45.455 18.20 13.19 45.15 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.601841 ACCTTTAGCACCGGTTCGTG 60.602 55.000 2.97 0.00 36.80 4.35
9 10 0.320160 GACCTTTAGCACCGGTTCGT 60.320 55.000 2.97 0.00 0.00 3.85
10 11 1.349259 CGACCTTTAGCACCGGTTCG 61.349 60.000 2.97 5.32 0.00 3.95
11 12 1.017701 CCGACCTTTAGCACCGGTTC 61.018 60.000 2.97 0.00 35.83 3.62
12 13 1.004200 CCGACCTTTAGCACCGGTT 60.004 57.895 2.97 0.00 35.83 4.44
13 14 2.660802 CCGACCTTTAGCACCGGT 59.339 61.111 0.00 0.00 35.83 5.28
14 15 2.818274 GCCGACCTTTAGCACCGG 60.818 66.667 0.00 0.00 42.74 5.28
15 16 2.818274 GGCCGACCTTTAGCACCG 60.818 66.667 0.00 0.00 0.00 4.94
16 17 2.038837 GTGGCCGACCTTTAGCACC 61.039 63.158 0.00 0.00 36.63 5.01
17 18 2.388232 CGTGGCCGACCTTTAGCAC 61.388 63.158 0.00 0.00 36.63 4.40
18 19 2.047655 CGTGGCCGACCTTTAGCA 60.048 61.111 0.00 0.00 36.63 3.49
19 20 1.375013 TTCGTGGCCGACCTTTAGC 60.375 57.895 0.00 0.00 44.13 3.09
20 21 1.017701 GGTTCGTGGCCGACCTTTAG 61.018 60.000 0.00 0.00 44.13 1.85
21 22 1.004679 GGTTCGTGGCCGACCTTTA 60.005 57.895 0.00 0.00 44.13 1.85
22 23 2.281276 GGTTCGTGGCCGACCTTT 60.281 61.111 0.00 0.00 44.13 3.11
29 30 0.176449 ATTAGTACCGGTTCGTGGCC 59.824 55.000 15.04 0.00 0.00 5.36
30 31 1.135024 TCATTAGTACCGGTTCGTGGC 60.135 52.381 15.04 0.00 0.00 5.01
31 32 2.945447 TCATTAGTACCGGTTCGTGG 57.055 50.000 15.04 0.29 0.00 4.94
32 33 3.979495 GCTATCATTAGTACCGGTTCGTG 59.021 47.826 15.04 10.08 0.00 4.35
33 34 3.304257 CGCTATCATTAGTACCGGTTCGT 60.304 47.826 15.04 0.00 0.00 3.85
34 35 3.231965 CGCTATCATTAGTACCGGTTCG 58.768 50.000 15.04 0.00 0.00 3.95
35 36 3.572584 CCGCTATCATTAGTACCGGTTC 58.427 50.000 15.04 8.12 0.00 3.62
36 37 2.288640 GCCGCTATCATTAGTACCGGTT 60.289 50.000 15.04 0.00 33.59 4.44
37 38 1.271656 GCCGCTATCATTAGTACCGGT 59.728 52.381 13.98 13.98 33.59 5.28
38 39 1.403780 GGCCGCTATCATTAGTACCGG 60.404 57.143 0.00 0.00 33.95 5.28
39 40 1.731424 CGGCCGCTATCATTAGTACCG 60.731 57.143 14.67 0.00 33.86 4.02
40 41 1.403780 CCGGCCGCTATCATTAGTACC 60.404 57.143 22.85 0.00 0.00 3.34
41 42 1.992170 CCGGCCGCTATCATTAGTAC 58.008 55.000 22.85 0.00 0.00 2.73
42 43 0.245539 GCCGGCCGCTATCATTAGTA 59.754 55.000 22.85 0.00 0.00 1.82
43 44 1.004918 GCCGGCCGCTATCATTAGT 60.005 57.895 22.85 0.00 0.00 2.24
44 45 3.876300 GCCGGCCGCTATCATTAG 58.124 61.111 22.85 3.31 0.00 1.73
59 60 2.818274 CGGTTCCAACGGCTAGCC 60.818 66.667 24.75 24.75 0.00 3.93
60 61 2.818274 CCGGTTCCAACGGCTAGC 60.818 66.667 6.04 6.04 45.34 3.42
66 67 0.446222 CATTAGTGCCGGTTCCAACG 59.554 55.000 1.90 0.00 0.00 4.10
67 68 0.808755 CCATTAGTGCCGGTTCCAAC 59.191 55.000 1.90 0.00 0.00 3.77
68 69 0.693622 TCCATTAGTGCCGGTTCCAA 59.306 50.000 1.90 0.00 0.00 3.53
69 70 0.035820 GTCCATTAGTGCCGGTTCCA 60.036 55.000 1.90 0.00 0.00 3.53
70 71 0.035820 TGTCCATTAGTGCCGGTTCC 60.036 55.000 1.90 0.00 0.00 3.62
71 72 1.084289 GTGTCCATTAGTGCCGGTTC 58.916 55.000 1.90 0.00 0.00 3.62
72 73 0.398696 TGTGTCCATTAGTGCCGGTT 59.601 50.000 1.90 0.00 0.00 4.44
73 74 0.618458 ATGTGTCCATTAGTGCCGGT 59.382 50.000 1.90 0.00 0.00 5.28
74 75 1.750193 AATGTGTCCATTAGTGCCGG 58.250 50.000 0.00 0.00 39.52 6.13
81 82 2.912771 CCGGCACTAATGTGTCCATTA 58.087 47.619 0.00 0.00 45.29 1.90
82 83 1.750193 CCGGCACTAATGTGTCCATT 58.250 50.000 0.00 0.00 45.29 3.16
83 84 0.748005 GCCGGCACTAATGTGTCCAT 60.748 55.000 24.80 0.00 45.29 3.41
84 85 1.376683 GCCGGCACTAATGTGTCCA 60.377 57.895 24.80 0.00 45.29 4.02
85 86 1.078426 AGCCGGCACTAATGTGTCC 60.078 57.895 31.54 0.00 45.29 4.02
86 87 0.391130 TGAGCCGGCACTAATGTGTC 60.391 55.000 31.54 14.56 45.44 3.67
87 88 0.036164 TTGAGCCGGCACTAATGTGT 59.964 50.000 31.54 3.33 45.44 3.72
88 89 1.164411 TTTGAGCCGGCACTAATGTG 58.836 50.000 31.54 0.00 46.37 3.21
89 90 1.812571 CTTTTGAGCCGGCACTAATGT 59.187 47.619 31.54 5.22 0.00 2.71
90 91 1.468054 GCTTTTGAGCCGGCACTAATG 60.468 52.381 31.54 25.53 0.00 1.90
91 92 0.811281 GCTTTTGAGCCGGCACTAAT 59.189 50.000 31.54 7.13 0.00 1.73
92 93 0.536233 TGCTTTTGAGCCGGCACTAA 60.536 50.000 31.54 22.93 0.00 2.24
93 94 0.536233 TTGCTTTTGAGCCGGCACTA 60.536 50.000 31.54 17.63 34.30 2.74
94 95 1.391157 TTTGCTTTTGAGCCGGCACT 61.391 50.000 31.54 9.09 34.30 4.40
95 96 1.067250 TTTGCTTTTGAGCCGGCAC 59.933 52.632 31.54 24.60 34.30 5.01
96 97 1.067250 GTTTGCTTTTGAGCCGGCA 59.933 52.632 31.54 5.56 0.00 5.69
97 98 1.664649 GGTTTGCTTTTGAGCCGGC 60.665 57.895 21.89 21.89 0.00 6.13
98 99 1.371635 CGGTTTGCTTTTGAGCCGG 60.372 57.895 0.00 0.00 36.05 6.13
99 100 1.371635 CCGGTTTGCTTTTGAGCCG 60.372 57.895 0.00 0.00 38.99 5.52
100 101 1.664649 GCCGGTTTGCTTTTGAGCC 60.665 57.895 1.90 0.00 0.00 4.70
101 102 1.067250 TGCCGGTTTGCTTTTGAGC 59.933 52.632 1.90 0.00 0.00 4.26
102 103 0.385390 AGTGCCGGTTTGCTTTTGAG 59.615 50.000 1.90 0.00 0.00 3.02
103 104 1.681538 TAGTGCCGGTTTGCTTTTGA 58.318 45.000 1.90 0.00 0.00 2.69
104 105 2.500509 TTAGTGCCGGTTTGCTTTTG 57.499 45.000 1.90 0.00 0.00 2.44
105 106 2.364002 ACATTAGTGCCGGTTTGCTTTT 59.636 40.909 1.90 0.00 0.00 2.27
106 107 1.960689 ACATTAGTGCCGGTTTGCTTT 59.039 42.857 1.90 0.00 0.00 3.51
107 108 1.269448 CACATTAGTGCCGGTTTGCTT 59.731 47.619 1.90 0.00 39.21 3.91
108 109 0.881118 CACATTAGTGCCGGTTTGCT 59.119 50.000 1.90 0.00 39.21 3.91
109 110 3.399879 CACATTAGTGCCGGTTTGC 57.600 52.632 1.90 0.00 39.21 3.68
124 125 1.674359 ACGGTCAAATGTCAAGCACA 58.326 45.000 0.00 0.00 40.18 4.57
125 126 2.774439 AACGGTCAAATGTCAAGCAC 57.226 45.000 0.00 0.00 0.00 4.40
126 127 3.791973 AAAACGGTCAAATGTCAAGCA 57.208 38.095 0.00 0.00 0.00 3.91
127 128 4.359706 AGAAAAACGGTCAAATGTCAAGC 58.640 39.130 0.00 0.00 0.00 4.01
128 129 6.725246 AGTAGAAAAACGGTCAAATGTCAAG 58.275 36.000 0.00 0.00 0.00 3.02
129 130 6.687081 AGTAGAAAAACGGTCAAATGTCAA 57.313 33.333 0.00 0.00 0.00 3.18
130 131 6.987992 ACTAGTAGAAAAACGGTCAAATGTCA 59.012 34.615 3.59 0.00 0.00 3.58
131 132 7.170320 TCACTAGTAGAAAAACGGTCAAATGTC 59.830 37.037 3.59 0.00 0.00 3.06
132 133 6.987992 TCACTAGTAGAAAAACGGTCAAATGT 59.012 34.615 3.59 0.00 0.00 2.71
133 134 7.384115 TCTCACTAGTAGAAAAACGGTCAAATG 59.616 37.037 3.59 0.00 0.00 2.32
134 135 7.384387 GTCTCACTAGTAGAAAAACGGTCAAAT 59.616 37.037 3.59 0.00 0.00 2.32
135 136 6.698766 GTCTCACTAGTAGAAAAACGGTCAAA 59.301 38.462 3.59 0.00 0.00 2.69
136 137 6.183360 TGTCTCACTAGTAGAAAAACGGTCAA 60.183 38.462 3.59 0.00 0.00 3.18
137 138 5.300034 TGTCTCACTAGTAGAAAAACGGTCA 59.700 40.000 3.59 0.00 0.00 4.02
138 139 5.766222 TGTCTCACTAGTAGAAAAACGGTC 58.234 41.667 3.59 0.00 0.00 4.79
139 140 5.779529 TGTCTCACTAGTAGAAAAACGGT 57.220 39.130 3.59 0.00 0.00 4.83
140 141 5.577164 CCATGTCTCACTAGTAGAAAAACGG 59.423 44.000 3.59 0.00 0.00 4.44
141 142 6.387465 TCCATGTCTCACTAGTAGAAAAACG 58.613 40.000 3.59 0.00 0.00 3.60
142 143 8.088981 TCTTCCATGTCTCACTAGTAGAAAAAC 58.911 37.037 3.59 0.00 0.00 2.43
143 144 8.190326 TCTTCCATGTCTCACTAGTAGAAAAA 57.810 34.615 3.59 0.00 0.00 1.94
144 145 7.776618 TCTTCCATGTCTCACTAGTAGAAAA 57.223 36.000 3.59 0.00 0.00 2.29
145 146 7.776618 TTCTTCCATGTCTCACTAGTAGAAA 57.223 36.000 3.59 0.00 0.00 2.52
146 147 7.093727 CCTTTCTTCCATGTCTCACTAGTAGAA 60.094 40.741 3.59 0.00 0.00 2.10
147 148 6.378564 CCTTTCTTCCATGTCTCACTAGTAGA 59.621 42.308 3.59 0.00 0.00 2.59
148 149 6.153680 ACCTTTCTTCCATGTCTCACTAGTAG 59.846 42.308 0.00 0.00 0.00 2.57
149 150 6.017192 ACCTTTCTTCCATGTCTCACTAGTA 58.983 40.000 0.00 0.00 0.00 1.82
150 151 4.841246 ACCTTTCTTCCATGTCTCACTAGT 59.159 41.667 0.00 0.00 0.00 2.57
151 152 5.413309 ACCTTTCTTCCATGTCTCACTAG 57.587 43.478 0.00 0.00 0.00 2.57
152 153 4.223032 GGACCTTTCTTCCATGTCTCACTA 59.777 45.833 0.00 0.00 32.82 2.74
153 154 3.008485 GGACCTTTCTTCCATGTCTCACT 59.992 47.826 0.00 0.00 32.82 3.41
154 155 3.339141 GGACCTTTCTTCCATGTCTCAC 58.661 50.000 0.00 0.00 32.82 3.51
165 166 2.154074 AGGTGGCGGGACCTTTCTT 61.154 57.895 0.00 0.00 44.53 2.52
257 258 3.849951 CGCCCTCATAGCCACCGT 61.850 66.667 0.00 0.00 0.00 4.83
264 265 0.179100 CAGGTGTGTCGCCCTCATAG 60.179 60.000 0.00 0.00 33.99 2.23
265 266 0.902984 ACAGGTGTGTCGCCCTCATA 60.903 55.000 0.00 0.00 33.99 2.15
425 431 7.687941 TTCTCAGAAAACAATTGGATCCTAC 57.312 36.000 14.23 0.00 0.00 3.18
588 634 2.095415 GTCTAACATTTGTGTTCCCGGC 60.095 50.000 0.00 0.00 33.59 6.13
591 637 3.404899 TCCGTCTAACATTTGTGTTCCC 58.595 45.455 0.00 0.00 33.59 3.97
610 656 5.551233 TGGGATCAATTGAATCTACGATCC 58.449 41.667 13.09 11.63 45.37 3.36
656 702 7.420446 GGAGTACCTGGTCTAGATTCTTCTCTA 60.420 44.444 0.63 0.00 33.17 2.43
700 748 2.031163 AACAGACTCACAGCCGGC 59.969 61.111 21.89 21.89 0.00 6.13
701 749 0.317160 TACAACAGACTCACAGCCGG 59.683 55.000 0.00 0.00 0.00 6.13
702 750 1.702886 CTACAACAGACTCACAGCCG 58.297 55.000 0.00 0.00 0.00 5.52
712 760 0.835971 TCTGGGCCTGCTACAACAGA 60.836 55.000 4.53 0.64 40.25 3.41
748 797 3.339141 GTCCGGAGCAAAGAGAGAAAAT 58.661 45.455 3.06 0.00 0.00 1.82
769 1052 6.055231 TCAACGTTTACAAATCAAGTCAGG 57.945 37.500 0.00 0.00 0.00 3.86
771 1054 6.259638 GGTTCAACGTTTACAAATCAAGTCA 58.740 36.000 0.00 0.00 0.00 3.41
782 1065 2.473984 CGTCTCAGGGTTCAACGTTTAC 59.526 50.000 0.00 0.00 0.00 2.01
802 1085 3.270027 TCAACCCTCACTATTTGCATCG 58.730 45.455 0.00 0.00 0.00 3.84
803 1086 5.050091 CGTATCAACCCTCACTATTTGCATC 60.050 44.000 0.00 0.00 0.00 3.91
804 1087 4.816385 CGTATCAACCCTCACTATTTGCAT 59.184 41.667 0.00 0.00 0.00 3.96
805 1088 4.188462 CGTATCAACCCTCACTATTTGCA 58.812 43.478 0.00 0.00 0.00 4.08
806 1089 4.189231 ACGTATCAACCCTCACTATTTGC 58.811 43.478 0.00 0.00 0.00 3.68
807 1090 6.334989 TGTACGTATCAACCCTCACTATTTG 58.665 40.000 0.00 0.00 0.00 2.32
808 1091 6.534475 TGTACGTATCAACCCTCACTATTT 57.466 37.500 0.00 0.00 0.00 1.40
809 1092 6.534475 TTGTACGTATCAACCCTCACTATT 57.466 37.500 0.00 0.00 0.00 1.73
810 1093 6.379133 TCTTTGTACGTATCAACCCTCACTAT 59.621 38.462 0.00 0.00 0.00 2.12
811 1094 5.711506 TCTTTGTACGTATCAACCCTCACTA 59.288 40.000 0.00 0.00 0.00 2.74
812 1095 4.525487 TCTTTGTACGTATCAACCCTCACT 59.475 41.667 0.00 0.00 0.00 3.41
813 1096 4.624452 GTCTTTGTACGTATCAACCCTCAC 59.376 45.833 0.00 0.00 0.00 3.51
814 1097 4.525487 AGTCTTTGTACGTATCAACCCTCA 59.475 41.667 0.00 0.00 0.00 3.86
815 1098 5.069501 AGTCTTTGTACGTATCAACCCTC 57.930 43.478 0.00 0.00 0.00 4.30
816 1099 5.011329 TGAAGTCTTTGTACGTATCAACCCT 59.989 40.000 0.00 0.00 0.00 4.34
817 1100 5.232463 TGAAGTCTTTGTACGTATCAACCC 58.768 41.667 0.00 0.00 0.00 4.11
818 1101 6.367969 ACATGAAGTCTTTGTACGTATCAACC 59.632 38.462 0.00 0.00 0.00 3.77
852 1607 9.143155 GGTAAAAAGGGACATCCACATAAATAT 57.857 33.333 0.00 0.00 38.24 1.28
854 1609 6.957020 TGGTAAAAAGGGACATCCACATAAAT 59.043 34.615 0.00 0.00 38.24 1.40
857 1612 5.522315 TGGTAAAAAGGGACATCCACATA 57.478 39.130 0.00 0.00 38.24 2.29
858 1613 4.396357 TGGTAAAAAGGGACATCCACAT 57.604 40.909 0.00 0.00 38.24 3.21
859 1614 3.885976 TGGTAAAAAGGGACATCCACA 57.114 42.857 0.00 0.00 38.24 4.17
860 1615 3.892588 TGTTGGTAAAAAGGGACATCCAC 59.107 43.478 0.00 0.00 38.24 4.02
861 1616 4.186077 TGTTGGTAAAAAGGGACATCCA 57.814 40.909 0.00 0.00 38.24 3.41
862 1617 5.538849 TTTGTTGGTAAAAAGGGACATCC 57.461 39.130 0.00 0.00 0.00 3.51
876 1631 5.265989 TCTACCTTTTGTCCTTTTGTTGGT 58.734 37.500 0.00 0.00 0.00 3.67
892 1647 2.180276 ACTCATGCCGACTTCTACCTT 58.820 47.619 0.00 0.00 0.00 3.50
894 1649 3.570550 AGATACTCATGCCGACTTCTACC 59.429 47.826 0.00 0.00 0.00 3.18
898 1653 5.637006 ATAGAGATACTCATGCCGACTTC 57.363 43.478 0.00 0.00 32.06 3.01
907 1662 9.581289 GGTGCTGGTATATATAGAGATACTCAT 57.419 37.037 2.46 0.00 31.58 2.90
943 1712 7.651808 ACAAAATGAGAGGTGTATTTCAAGTG 58.348 34.615 0.00 0.00 0.00 3.16
948 1717 7.530863 GGAGAACAAAATGAGAGGTGTATTTC 58.469 38.462 0.00 0.00 0.00 2.17
951 1721 5.046591 TCGGAGAACAAAATGAGAGGTGTAT 60.047 40.000 0.00 0.00 0.00 2.29
1243 2064 2.573920 GCCCTGGTTCGGCAAATTA 58.426 52.632 0.00 0.00 46.27 1.40
1258 2079 3.955775 GCATGTTTGCTGTTGCCC 58.044 55.556 0.00 0.00 45.77 5.36
1354 2175 7.062138 GTGGCATAGTGTAATTGTCATGTTTTG 59.938 37.037 0.00 0.00 0.00 2.44
1368 2189 3.005578 TGTGTACAACGTGGCATAGTGTA 59.994 43.478 0.00 0.00 0.00 2.90
1404 2233 1.676967 ACGGACGGAGGGAGTACAC 60.677 63.158 0.00 0.00 0.00 2.90
1431 2260 1.199789 GGCTCGAAATGTGAATGTGCA 59.800 47.619 0.00 0.00 0.00 4.57
1446 2275 1.737793 GTATGGTCAAACTTGGGCTCG 59.262 52.381 0.00 0.00 0.00 5.03
1515 2344 8.798153 CGTTATATTTGCATTCAAAGGAAGTTC 58.202 33.333 0.00 0.00 44.47 3.01
1619 2449 4.863548 TCTCTCCGTCCTGGTTTATTAGA 58.136 43.478 0.00 0.00 39.52 2.10
1630 2460 1.751924 GCATTGTACTCTCTCCGTCCT 59.248 52.381 0.00 0.00 0.00 3.85
1639 2469 9.762933 AAACAATTTAATGTTGCATTGTACTCT 57.237 25.926 4.78 0.00 42.49 3.24
1732 2562 3.658757 ACAAATCATGGGTGTTTTCCG 57.341 42.857 0.00 0.00 0.00 4.30
1760 2590 5.163764 CCATCACACAGTAAACGTTGCATAT 60.164 40.000 0.00 0.00 0.00 1.78
1840 2670 6.962686 ACTATTGTTGTAAAAGTTTCGACCC 58.037 36.000 0.00 0.00 0.00 4.46
2017 2855 7.094848 GGCAGTTGCATGGTTTTACAAATAAAT 60.095 33.333 6.43 0.00 44.36 1.40
2090 2932 7.335673 TCAACGTGATGAAATTTGGATAGCTAA 59.664 33.333 0.00 0.00 0.00 3.09
2392 3257 4.827835 AGCGAGAGTATAAGCTCCATTACA 59.172 41.667 0.00 0.00 34.48 2.41
2675 3551 6.109359 TCGGATTCAAAGAAATCTCCTTCTC 58.891 40.000 0.00 0.00 34.49 2.87
2677 3553 6.934048 ATCGGATTCAAAGAAATCTCCTTC 57.066 37.500 0.00 0.00 36.19 3.46
2692 3568 9.813080 GCTCAATAAACTATTTGTATCGGATTC 57.187 33.333 0.00 0.00 0.00 2.52
2810 3686 6.231951 TCTACAAACGGTGATTCCAAATGTA 58.768 36.000 0.00 0.00 35.57 2.29
2826 3702 4.449405 GCAGAAGACACTTCCTCTACAAAC 59.551 45.833 7.72 0.00 0.00 2.93
3091 3970 7.716998 CCACCTAGAATGAGCATAACATAAGTT 59.283 37.037 0.00 0.00 41.74 2.66
3139 4019 8.786898 TCTGTCTCTTATGAAACTCAAATTTGG 58.213 33.333 17.90 11.02 0.00 3.28
3294 4174 3.969287 AGTTGCATGCTCTCTTCAGTA 57.031 42.857 20.33 0.00 0.00 2.74
3508 4714 5.458069 CCATGAGGACATACCCCACATAATT 60.458 44.000 0.00 0.00 40.05 1.40
3516 4722 1.071471 CGCCATGAGGACATACCCC 59.929 63.158 0.00 0.00 40.05 4.95
3532 4740 4.396166 CCATCCCAATAGAATTATGGACGC 59.604 45.833 0.00 0.00 36.76 5.19
3540 4748 7.416731 AGCTAATATGCCATCCCAATAGAATT 58.583 34.615 0.00 0.00 0.00 2.17
3653 4872 6.659745 AACTAGTGTGTGAGGTACAATGTA 57.340 37.500 0.00 0.00 41.89 2.29
3809 5037 3.081804 GACGATGTCCCAATTTCCACTT 58.918 45.455 0.00 0.00 0.00 3.16
3814 5042 3.278574 TCCATGACGATGTCCCAATTTC 58.721 45.455 0.00 0.00 0.00 2.17
3845 5073 9.978044 AACGGTACTTTCCTTCATATCTTATAC 57.022 33.333 0.00 0.00 0.00 1.47
3983 5216 4.331108 TGCATTGCACTATGTTAGACCAA 58.669 39.130 7.38 0.00 31.71 3.67
3999 5232 1.108776 CCTTCATCCCACCTGCATTG 58.891 55.000 0.00 0.00 0.00 2.82
4240 5477 0.821301 TTTCATCTTGGCGGCACACA 60.821 50.000 12.92 0.00 0.00 3.72
4300 5540 6.743575 ACTTTGTATCAGCCTAACAACATC 57.256 37.500 0.00 0.00 33.10 3.06
4362 5602 7.823745 TGTAGACTTGCATACAGATCTATCA 57.176 36.000 0.00 0.00 30.89 2.15
4374 5614 8.854614 AAGTATTTTCTCTTGTAGACTTGCAT 57.145 30.769 0.00 0.00 32.51 3.96
4425 5665 4.277672 GTCGGCATAGTCCTACATGTTCTA 59.722 45.833 2.30 3.14 0.00 2.10
4450 5692 3.624861 CGAAGCATACAAAAGGCTCATCT 59.375 43.478 0.00 0.00 36.76 2.90
4544 5787 0.251165 CCGGGGCCACATAATAAGGG 60.251 60.000 5.46 0.00 0.00 3.95
4548 5791 0.694783 TCACCCGGGGCCACATAATA 60.695 55.000 27.92 0.00 0.00 0.98
4639 5929 7.710676 ACTTGTATCCTACCATCTATAGCTG 57.289 40.000 0.00 0.00 0.00 4.24
4641 5931 6.814146 GCAACTTGTATCCTACCATCTATAGC 59.186 42.308 0.00 0.00 0.00 2.97
4750 6041 5.309638 TGGTCATTCGATTAGTTCAACCAA 58.690 37.500 0.00 0.00 0.00 3.67
4947 6245 4.146443 GTCACTGAACGCACATTTTAAAGC 59.854 41.667 0.00 0.00 0.00 3.51
4961 6259 4.976116 GCCACAAAAAGTATGTCACTGAAC 59.024 41.667 0.00 0.00 37.63 3.18
4966 6264 8.458843 AGTTATATGCCACAAAAAGTATGTCAC 58.541 33.333 0.00 0.00 0.00 3.67
4995 6293 8.879342 TCACCATTAGTTTTACCAACAAAATG 57.121 30.769 0.00 0.00 30.56 2.32
4996 6294 9.892130 TTTCACCATTAGTTTTACCAACAAAAT 57.108 25.926 0.00 0.00 30.56 1.82
5050 6349 4.593634 AGTACTCCCTGCATTCCCTTATAC 59.406 45.833 0.00 0.00 0.00 1.47
5124 6434 9.078990 TCTGTTATTCACCACTAGTATATGGAG 57.921 37.037 4.21 0.00 39.46 3.86
5156 6473 2.433436 ACCGCACAAGATTAACTTCCC 58.567 47.619 0.00 0.00 36.61 3.97
5173 6490 0.173255 ACCGTTATCACCCGTAACCG 59.827 55.000 0.00 0.00 0.00 4.44
5176 6493 3.056250 TGCTTAACCGTTATCACCCGTAA 60.056 43.478 0.00 0.00 0.00 3.18
5225 6542 5.907207 TCAAGAGTGACACATCTTATAGCC 58.093 41.667 8.59 0.00 34.04 3.93
5311 6631 5.971763 AGAAGAGACCACACTTGATGATAC 58.028 41.667 0.00 0.00 0.00 2.24
5769 7113 5.221541 CCATAAGGAATCTAAGCTTCCGAGT 60.222 44.000 0.00 0.00 45.63 4.18
5778 7122 8.651389 TGATAGGTTCACCATAAGGAATCTAAG 58.349 37.037 0.00 0.00 39.44 2.18
5861 7205 4.948847 ACTCCCAATGAACAAAAAGCTTC 58.051 39.130 0.00 0.00 0.00 3.86
5898 7242 4.394920 CAGTGACCACAAACAACTTGTAGT 59.605 41.667 2.78 0.00 46.91 2.73
5910 7254 4.897509 ATCTTGAGATCAGTGACCACAA 57.102 40.909 0.00 0.00 0.00 3.33
6002 7358 2.185350 CACACTAGAGCCCGCCTG 59.815 66.667 0.00 0.00 0.00 4.85
6003 7359 3.775654 GCACACTAGAGCCCGCCT 61.776 66.667 0.00 0.00 0.00 5.52
6006 7362 0.317938 GATACGCACACTAGAGCCCG 60.318 60.000 0.00 0.00 0.00 6.13
6007 7363 0.744874 TGATACGCACACTAGAGCCC 59.255 55.000 0.00 0.00 0.00 5.19
6010 7366 2.616376 AGCTCTGATACGCACACTAGAG 59.384 50.000 0.00 0.00 35.84 2.43
6011 7367 2.356069 CAGCTCTGATACGCACACTAGA 59.644 50.000 0.00 0.00 0.00 2.43
6012 7368 2.098280 ACAGCTCTGATACGCACACTAG 59.902 50.000 3.60 0.00 0.00 2.57
6013 7369 2.092323 ACAGCTCTGATACGCACACTA 58.908 47.619 3.60 0.00 0.00 2.74
6014 7370 0.891373 ACAGCTCTGATACGCACACT 59.109 50.000 3.60 0.00 0.00 3.55
6026 7384 4.957684 AACCTAGTACAAACACAGCTCT 57.042 40.909 0.00 0.00 0.00 4.09
6160 7521 7.461182 TGCGGGGAATGGATATAATAAAAAG 57.539 36.000 0.00 0.00 0.00 2.27
6161 7522 7.841282 TTGCGGGGAATGGATATAATAAAAA 57.159 32.000 0.00 0.00 0.00 1.94
6166 7527 5.332743 ACATTTGCGGGGAATGGATATAAT 58.667 37.500 0.00 0.00 38.50 1.28
6380 7989 3.604130 CGCCATTTTAGTTCAGCGG 57.396 52.632 0.00 0.00 39.89 5.52
6623 8236 8.980610 TGCAAAATATTCATTTCAAGTCAAGTG 58.019 29.630 0.00 0.00 33.09 3.16
6633 8246 8.067784 CCAAGATGCATGCAAAATATTCATTTC 58.932 33.333 26.68 12.77 33.09 2.17
6769 8394 9.531942 TTATCATAATGTAAGCATGCAAAAAGG 57.468 29.630 21.98 0.17 35.15 3.11
6891 8518 3.002246 CAGTTTCACTTCAAGCTTGCGTA 59.998 43.478 21.99 8.40 0.00 4.42
6893 8520 2.378806 CAGTTTCACTTCAAGCTTGCG 58.621 47.619 21.99 16.42 0.00 4.85
6915 8543 1.071385 CCTAGGTCAGGCATGCTTAGG 59.929 57.143 18.92 9.45 37.70 2.69
6969 8599 2.225496 ACATTTTTCATGGGCCCCACTA 60.225 45.455 22.27 0.00 35.80 2.74
6991 8621 6.035005 GCCGCTGTATATATTACACATGACAG 59.965 42.308 0.00 0.00 36.88 3.51
7012 8642 1.071471 ATACCCACATAGCAGCCGC 59.929 57.895 0.00 0.00 38.99 6.53
7144 8788 8.925161 TTAAAAAGAAGACATTTGTGTTCCAG 57.075 30.769 14.77 0.00 45.95 3.86
7189 8833 6.543735 AGCTAGTTTAATCACAGGGAAGTTT 58.456 36.000 0.00 0.00 0.00 2.66
7193 8837 7.630082 ACAATAGCTAGTTTAATCACAGGGAA 58.370 34.615 0.00 0.00 0.00 3.97
7373 9161 3.241963 ACATGCGTCATATTTTGTCGTCG 60.242 43.478 0.00 0.00 38.81 5.12
7384 9172 6.821160 TCCTTTATCTTTTCACATGCGTCATA 59.179 34.615 0.00 0.00 0.00 2.15
7623 9411 4.929146 ACTGCTACTTTTGTATCCCCTT 57.071 40.909 0.00 0.00 33.96 3.95
7647 9435 5.672051 CATTATTGTTGCAAAAGCAGTGTG 58.328 37.500 0.00 0.00 0.00 3.82
7690 9479 7.470702 GCCAATCTAAGTAGACTGCTCTTGATA 60.471 40.741 0.00 0.00 34.72 2.15
7701 9490 4.770795 ACATGGTGCCAATCTAAGTAGAC 58.229 43.478 0.00 0.00 34.72 2.59
7768 9633 8.498054 AGTTTAATGTCACTCATACATTCCTG 57.502 34.615 4.82 0.00 44.36 3.86
7769 9634 9.520515 AAAGTTTAATGTCACTCATACATTCCT 57.479 29.630 4.82 0.00 44.36 3.36
8000 9865 9.134734 TCCTTACAAAAATGCAACGAAATAATC 57.865 29.630 0.00 0.00 0.00 1.75
8009 9874 4.990426 ACATGCTCCTTACAAAAATGCAAC 59.010 37.500 0.00 0.00 32.66 4.17
8101 9968 6.875726 TGATATTGAAAATCTATCTGGAGCCG 59.124 38.462 0.00 0.00 0.00 5.52
8137 10004 6.791887 ATCATGATTGGTATGACGATTGTC 57.208 37.500 1.18 6.11 45.71 3.18
8172 10039 3.694072 GCCAAGTGTGACATGCCTATTAA 59.306 43.478 0.00 0.00 0.00 1.40
8187 10054 6.095300 TCAATTACCAATACTGATGCCAAGTG 59.905 38.462 0.00 0.00 0.00 3.16
8191 10058 5.504853 TGTCAATTACCAATACTGATGCCA 58.495 37.500 0.00 0.00 0.00 4.92
8192 10059 6.639632 ATGTCAATTACCAATACTGATGCC 57.360 37.500 0.00 0.00 0.00 4.40
8232 10099 2.870435 GCACGGGTTGATCACTAGTTGT 60.870 50.000 0.00 0.00 0.00 3.32
8241 10108 1.210155 GCAGTTGCACGGGTTGATC 59.790 57.895 0.00 0.00 41.59 2.92
8258 10125 2.159393 TCGTCAATTGCTAGCCATTTGC 60.159 45.455 13.29 7.08 35.69 3.68
8261 10128 2.939103 GTCTCGTCAATTGCTAGCCATT 59.061 45.455 13.29 10.50 0.00 3.16
8332 10200 7.315142 TCTTCATATCAAGTTTTCAACCATGC 58.685 34.615 0.00 0.00 0.00 4.06
8548 10426 5.938125 GCCACAAACTTGTAGGATCTTTCTA 59.062 40.000 12.43 0.00 39.91 2.10
8559 10437 7.489757 GTGATTTAGTTTTGCCACAAACTTGTA 59.510 33.333 10.13 0.17 39.91 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.