Multiple sequence alignment - TraesCS3D01G118700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G118700 chr3D 100.000 4261 0 0 1 4261 73386761 73391021 0.000000e+00 7869.0
1 TraesCS3D01G118700 chr3D 80.781 333 43 16 459 777 200518376 200518051 1.530000e-59 241.0
2 TraesCS3D01G118700 chr3D 79.101 378 53 17 419 777 29739378 29739748 1.980000e-58 237.0
3 TraesCS3D01G118700 chr3A 95.532 3626 125 13 645 4260 86366731 86370329 0.000000e+00 5764.0
4 TraesCS3D01G118700 chr3A 94.495 654 22 7 1 647 86365977 86366623 0.000000e+00 996.0
5 TraesCS3D01G118700 chr3B 91.512 3240 179 23 775 3952 118735942 118739147 0.000000e+00 4372.0
6 TraesCS3D01G118700 chr3B 84.043 376 37 14 1 359 118734917 118735286 1.470000e-89 340.0
7 TraesCS3D01G118700 chr3B 94.167 120 7 0 2223 2342 118737378 118737497 2.620000e-42 183.0
8 TraesCS3D01G118700 chr3B 96.875 32 1 0 1735 1766 118735920 118735889 2.000000e-03 54.7
9 TraesCS3D01G118700 chr7D 85.886 1084 127 15 780 1850 7305697 7304627 0.000000e+00 1131.0
10 TraesCS3D01G118700 chr7D 78.836 1375 139 85 2314 3579 7304324 7302993 0.000000e+00 787.0
11 TraesCS3D01G118700 chr4A 80.398 1459 192 51 426 1850 732521130 732519732 0.000000e+00 1024.0
12 TraesCS3D01G118700 chr4A 75.755 1291 165 75 2314 3507 732519445 732518206 8.170000e-142 514.0
13 TraesCS3D01G118700 chr7A 89.619 472 42 5 1387 1851 8265143 8264672 1.020000e-165 593.0
14 TraesCS3D01G118700 chr7A 81.032 775 74 32 2314 3022 8264367 8263600 2.240000e-152 549.0
15 TraesCS3D01G118700 chr2B 76.286 797 101 49 2763 3504 274990335 274991098 1.130000e-90 344.0
16 TraesCS3D01G118700 chr5A 75.574 741 87 53 2763 3431 609689051 609689769 3.240000e-71 279.0
17 TraesCS3D01G118700 chr2A 75.982 662 74 45 2763 3358 675203774 675203132 3.270000e-66 263.0
18 TraesCS3D01G118700 chr6B 76.274 569 78 34 2967 3504 650677231 650677773 2.540000e-62 250.0
19 TraesCS3D01G118700 chr6B 79.156 379 50 21 419 777 647891552 647891921 7.120000e-58 235.0
20 TraesCS3D01G118700 chr6A 79.420 379 49 21 419 777 55652837 55653206 1.530000e-59 241.0
21 TraesCS3D01G118700 chr7B 83.420 193 31 1 1293 1484 296667909 296667717 1.220000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G118700 chr3D 73386761 73391021 4260 False 7869.000000 7869 100.000000 1 4261 1 chr3D.!!$F2 4260
1 TraesCS3D01G118700 chr3A 86365977 86370329 4352 False 3380.000000 5764 95.013500 1 4260 2 chr3A.!!$F1 4259
2 TraesCS3D01G118700 chr3B 118734917 118739147 4230 False 1631.666667 4372 89.907333 1 3952 3 chr3B.!!$F1 3951
3 TraesCS3D01G118700 chr7D 7302993 7305697 2704 True 959.000000 1131 82.361000 780 3579 2 chr7D.!!$R1 2799
4 TraesCS3D01G118700 chr4A 732518206 732521130 2924 True 769.000000 1024 78.076500 426 3507 2 chr4A.!!$R1 3081
5 TraesCS3D01G118700 chr7A 8263600 8265143 1543 True 571.000000 593 85.325500 1387 3022 2 chr7A.!!$R1 1635
6 TraesCS3D01G118700 chr2B 274990335 274991098 763 False 344.000000 344 76.286000 2763 3504 1 chr2B.!!$F1 741
7 TraesCS3D01G118700 chr5A 609689051 609689769 718 False 279.000000 279 75.574000 2763 3431 1 chr5A.!!$F1 668
8 TraesCS3D01G118700 chr2A 675203132 675203774 642 True 263.000000 263 75.982000 2763 3358 1 chr2A.!!$R1 595
9 TraesCS3D01G118700 chr6B 650677231 650677773 542 False 250.000000 250 76.274000 2967 3504 1 chr6B.!!$F2 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
318 331 1.171308 ACTACTTAGGTTCGAGCGCA 58.829 50.000 11.47 0.00 0.00 6.09 F
1717 2127 2.289945 GCTCTTCCCATATGGTGCTAGG 60.290 54.545 20.46 4.12 34.77 3.02 F
2760 3243 1.614317 CCCCGGAATCAAACTTCAGCT 60.614 52.381 0.73 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2568 1.202121 GCCAAAGATTCTTCGCTGCTC 60.202 52.381 0.0 0.0 0.0 4.26 R
3158 3721 0.815615 GCCTAGAGTCAAATGCCCCG 60.816 60.000 0.0 0.0 0.0 5.73 R
4158 4773 0.178915 TCCCTCGGTCTCCCAAAAGA 60.179 55.000 0.0 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 91 6.127842 GGGTATAATTCGTGTGGTTTTGATGT 60.128 38.462 0.00 0.00 0.00 3.06
306 316 6.439375 TGGCTTGATTTCTCTGGTACTACTTA 59.561 38.462 0.00 0.00 0.00 2.24
308 318 6.981559 GCTTGATTTCTCTGGTACTACTTAGG 59.018 42.308 0.00 0.00 0.00 2.69
309 319 7.363968 GCTTGATTTCTCTGGTACTACTTAGGT 60.364 40.741 0.00 0.00 0.00 3.08
310 320 8.431910 TTGATTTCTCTGGTACTACTTAGGTT 57.568 34.615 0.00 0.00 0.00 3.50
318 331 1.171308 ACTACTTAGGTTCGAGCGCA 58.829 50.000 11.47 0.00 0.00 6.09
510 652 4.637977 TCTTGTTGTTGCATAACTGTGTGA 59.362 37.500 13.45 4.62 37.68 3.58
513 655 5.900425 TGTTGTTGCATAACTGTGTGATTT 58.100 33.333 13.45 0.00 37.68 2.17
537 687 5.822519 TGTAGCAATCACAATTAGGGATCAC 59.177 40.000 0.00 0.00 40.26 3.06
553 706 4.462483 GGGATCACTTGCTTGGTTTATTGA 59.538 41.667 0.00 0.00 0.00 2.57
643 797 9.589461 TTGAACCCTAACTGGAACAAATATTAA 57.411 29.630 0.00 0.00 38.70 1.40
677 940 7.718272 TGGTGTAAGTACATAAAACAGTGAC 57.282 36.000 0.00 0.00 38.63 3.67
685 948 8.428186 AGTACATAAAACAGTGACTTTTTCGA 57.572 30.769 0.00 0.00 0.00 3.71
693 956 5.273944 ACAGTGACTTTTTCGATTTTGCTC 58.726 37.500 0.00 0.00 0.00 4.26
771 1040 4.862018 TCGCTAAACCAAATTAAAGCATGC 59.138 37.500 10.51 10.51 31.71 4.06
835 1220 6.408858 TTTCTGATCTGAAACGTATCTTGC 57.591 37.500 20.19 0.00 31.81 4.01
965 1356 5.248380 AGGGCTAGATCAATATTGAACCC 57.752 43.478 21.50 22.59 41.13 4.11
968 1359 4.691216 GGCTAGATCAATATTGAACCCGAC 59.309 45.833 21.50 11.20 41.13 4.79
992 1386 2.604046 ACCACTGCTGACGAATATCC 57.396 50.000 0.00 0.00 0.00 2.59
1119 1513 4.834496 ACCAACAAATCATCAGGTGATGTT 59.166 37.500 17.48 8.47 46.80 2.71
1239 1636 4.256920 AGCAGCTACATTTGGACTGTAAG 58.743 43.478 0.00 0.00 42.29 2.34
1314 1713 3.534524 GCAAAGTGCAGAAGAGAAGAC 57.465 47.619 0.00 0.00 44.26 3.01
1717 2127 2.289945 GCTCTTCCCATATGGTGCTAGG 60.290 54.545 20.46 4.12 34.77 3.02
2019 2447 7.330900 AGAAATTAGCAATGATGGTTCAGAG 57.669 36.000 0.00 0.00 38.46 3.35
2139 2568 6.128742 GGTTTGAGCATAATTTGAAGCAACAG 60.129 38.462 0.00 0.00 0.00 3.16
2426 2888 9.881529 GCAATTTCATTTGATTTACAACAATGT 57.118 25.926 0.00 0.00 43.74 2.71
2594 3068 1.650825 AAACAACCGCCTTTGCAAAG 58.349 45.000 28.69 28.69 37.32 2.77
2760 3243 1.614317 CCCCGGAATCAAACTTCAGCT 60.614 52.381 0.73 0.00 0.00 4.24
2956 3484 4.431416 TGTTCTACTGAAGGCAGGAAAA 57.569 40.909 0.00 0.00 46.60 2.29
2978 3512 3.736094 AGGAATCAACCCCTCAGATACA 58.264 45.455 0.00 0.00 0.00 2.29
3314 3888 8.783660 AGTTATAGATCCTGTAAAGATCACCA 57.216 34.615 0.00 0.00 42.19 4.17
3379 3969 4.645136 TGAAGCTGGTCGTGTAGATAATCT 59.355 41.667 0.00 0.00 0.00 2.40
3458 4054 5.116377 TGCGCGAATTCTGTATTTTCAAAAC 59.884 36.000 12.10 0.00 0.00 2.43
3500 4097 5.422666 TGCTTACCATTTTCTATGCATCG 57.577 39.130 0.19 0.00 0.00 3.84
3530 4127 5.730269 TCGTCAAATGTTTTACGAACAGAC 58.270 37.500 11.21 0.00 41.88 3.51
3656 4253 4.114794 GCTTTGAAGTTGATTGTGCTTGT 58.885 39.130 0.00 0.00 0.00 3.16
3668 4265 2.811855 TGTGCTTGTGCTTTTGTCATG 58.188 42.857 0.00 0.00 40.48 3.07
3669 4266 2.426381 TGTGCTTGTGCTTTTGTCATGA 59.574 40.909 0.00 0.00 40.48 3.07
3670 4267 3.119209 TGTGCTTGTGCTTTTGTCATGAA 60.119 39.130 0.00 0.00 40.48 2.57
3671 4268 3.864583 GTGCTTGTGCTTTTGTCATGAAA 59.135 39.130 0.00 0.00 40.48 2.69
3719 4316 5.555966 TCAGTGGTATGTTGCTAAATGACA 58.444 37.500 0.00 0.00 0.00 3.58
3740 4337 8.969121 TGACAATATCAATTTTGTGTCATCAC 57.031 30.769 9.22 0.00 38.54 3.06
3750 4347 3.323751 TGTGTCATCACTCTGTCCATG 57.676 47.619 0.00 0.00 44.14 3.66
3751 4348 2.634453 TGTGTCATCACTCTGTCCATGT 59.366 45.455 0.00 0.00 44.14 3.21
3758 4355 6.650807 GTCATCACTCTGTCCATGTTTTCTTA 59.349 38.462 0.00 0.00 0.00 2.10
3761 4358 6.223852 TCACTCTGTCCATGTTTTCTTAGAC 58.776 40.000 0.00 0.00 0.00 2.59
3767 4364 5.163248 TGTCCATGTTTTCTTAGACCTCACA 60.163 40.000 0.00 0.00 0.00 3.58
3805 4402 8.429641 ACTACAAGATACAAGAGGTTGAGAAAA 58.570 33.333 0.00 0.00 37.10 2.29
3815 4415 5.819991 AGAGGTTGAGAAAAAGGCATATCA 58.180 37.500 0.00 0.00 0.00 2.15
3816 4416 5.649831 AGAGGTTGAGAAAAAGGCATATCAC 59.350 40.000 0.00 0.00 0.00 3.06
3922 4534 5.209818 TCAACTCTTGACGGTAATCTTGT 57.790 39.130 0.00 0.00 34.08 3.16
3931 4543 2.838202 ACGGTAATCTTGTCCAGATGGT 59.162 45.455 0.00 0.00 41.93 3.55
4037 4649 6.008696 TCCATATGATCTTTTAACCGGGTT 57.991 37.500 17.83 17.83 0.00 4.11
4038 4650 5.825679 TCCATATGATCTTTTAACCGGGTTG 59.174 40.000 22.44 5.66 0.00 3.77
4062 4674 5.496133 AGTGATGCACTTCTATTTCATGC 57.504 39.130 0.00 0.00 42.59 4.06
4064 4676 4.096833 GTGATGCACTTCTATTTCATGCCA 59.903 41.667 0.00 0.00 35.37 4.92
4137 4749 5.334414 CGAGTCATAAAGAAGCAAAGCAACT 60.334 40.000 0.00 0.00 0.00 3.16
4158 4773 4.835056 ACTAGGAGCATTTTGCCTTCTTTT 59.165 37.500 0.00 0.00 46.52 2.27
4163 4778 5.528690 GGAGCATTTTGCCTTCTTTTCTTTT 59.471 36.000 0.00 0.00 46.52 2.27
4249 4864 2.659244 TTCCGCGACGTGTGTTCC 60.659 61.111 8.23 0.00 0.00 3.62
4250 4865 3.141522 TTCCGCGACGTGTGTTCCT 62.142 57.895 8.23 0.00 0.00 3.36
4260 4875 1.602165 CGTGTGTTCCTCTGTACGCTT 60.602 52.381 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 54 4.141665 CGAATTATACCCTACCCAACCACA 60.142 45.833 0.00 0.00 0.00 4.17
173 175 3.067833 GCTCGAATAAAGATACAGGGGC 58.932 50.000 0.00 0.00 0.00 5.80
177 179 2.405357 CGCGGCTCGAATAAAGATACAG 59.595 50.000 0.00 0.00 41.67 2.74
178 180 2.390938 CGCGGCTCGAATAAAGATACA 58.609 47.619 0.00 0.00 41.67 2.29
179 181 1.719780 CCGCGGCTCGAATAAAGATAC 59.280 52.381 14.67 0.00 41.67 2.24
180 182 1.336517 CCCGCGGCTCGAATAAAGATA 60.337 52.381 22.85 0.00 41.67 1.98
181 183 0.600255 CCCGCGGCTCGAATAAAGAT 60.600 55.000 22.85 0.00 41.67 2.40
244 246 0.857675 AAGGTTTACCCTGCCTTGGT 59.142 50.000 0.00 0.00 45.47 3.67
306 316 1.668151 GGTTTCTGCGCTCGAACCT 60.668 57.895 23.07 0.00 0.00 3.50
308 318 1.668151 AGGGTTTCTGCGCTCGAAC 60.668 57.895 9.73 10.21 0.00 3.95
309 319 1.667830 CAGGGTTTCTGCGCTCGAA 60.668 57.895 9.73 8.87 36.60 3.71
310 320 2.048222 CAGGGTTTCTGCGCTCGA 60.048 61.111 9.73 1.76 36.60 4.04
318 331 4.604490 TCCATTAGTTAACCCAGGGTTTCT 59.396 41.667 29.73 25.97 44.33 2.52
510 652 7.560991 TGATCCCTAATTGTGATTGCTACAAAT 59.439 33.333 0.00 0.00 40.95 2.32
513 655 5.822519 GTGATCCCTAATTGTGATTGCTACA 59.177 40.000 0.00 0.00 0.00 2.74
643 797 9.796180 TTTATGTACTTACACCAACAAAGGTAT 57.204 29.630 0.00 0.00 40.77 2.73
685 948 4.044426 GAGCACAAACTTTCGAGCAAAAT 58.956 39.130 0.00 0.00 0.00 1.82
693 956 4.214980 ACTGAATGAGCACAAACTTTCG 57.785 40.909 0.00 0.00 0.00 3.46
766 1035 7.703298 TTCAAATGCTATGAAATAAGCATGC 57.297 32.000 10.51 10.51 40.35 4.06
794 1177 6.378582 TCAGAAAATTTGCGAGTATCAAACC 58.621 36.000 0.00 0.00 36.40 3.27
835 1220 8.289618 TCTTCTCAATTTGATAAAGTCCAAACG 58.710 33.333 15.66 0.00 35.42 3.60
936 1327 8.454859 TCAATATTGATCTAGCCCTAGGAAAT 57.545 34.615 14.23 0.00 31.42 2.17
992 1386 2.833338 TGGGGAGCTTTCATGATTTTGG 59.167 45.455 0.00 0.00 0.00 3.28
1119 1513 8.999895 ACTAGAAATTAGGAATAGGGCACTAAA 58.000 33.333 0.00 0.00 31.86 1.85
1239 1636 3.751518 ACTTAACAGGGACATGTGGTTC 58.248 45.455 1.15 0.00 32.52 3.62
1900 2310 1.366111 AAGACACACACACACGCACC 61.366 55.000 0.00 0.00 0.00 5.01
2019 2447 2.724977 TGACATGACGAGACTCCAAC 57.275 50.000 0.00 0.00 0.00 3.77
2139 2568 1.202121 GCCAAAGATTCTTCGCTGCTC 60.202 52.381 0.00 0.00 0.00 4.26
2426 2888 8.999431 GGATTAAGTCTCAAGTACAAATGACAA 58.001 33.333 0.00 0.00 0.00 3.18
2760 3243 4.100653 CCATGAGCTGAAGAGAACATCCTA 59.899 45.833 0.00 0.00 0.00 2.94
2956 3484 4.111577 TGTATCTGAGGGGTTGATTCCTT 58.888 43.478 0.00 0.00 32.74 3.36
2978 3512 5.603813 ACATTATCATTATTGCCCAAGCCTT 59.396 36.000 0.00 0.00 38.69 4.35
3158 3721 0.815615 GCCTAGAGTCAAATGCCCCG 60.816 60.000 0.00 0.00 0.00 5.73
3379 3969 2.417651 CGACTAAGATGGGCCGTTAACA 60.418 50.000 6.39 0.00 0.00 2.41
3438 4034 7.860373 TGGACAGTTTTGAAAATACAGAATTCG 59.140 33.333 0.00 0.00 0.00 3.34
3458 4054 1.069823 AGCCGAGCAGATTATGGACAG 59.930 52.381 0.00 0.00 0.00 3.51
3530 4127 7.483307 TCAAGTCCAAAGTTTCAAAGAGAATG 58.517 34.615 0.00 0.00 35.83 2.67
3617 4214 4.576873 TCAAAGCAATGTAACGGTGAAGAA 59.423 37.500 0.00 0.00 0.00 2.52
3619 4216 4.481930 TCAAAGCAATGTAACGGTGAAG 57.518 40.909 0.00 0.00 0.00 3.02
3620 4217 4.336993 ACTTCAAAGCAATGTAACGGTGAA 59.663 37.500 0.00 0.00 0.00 3.18
3621 4218 3.880490 ACTTCAAAGCAATGTAACGGTGA 59.120 39.130 0.00 0.00 0.00 4.02
3622 4219 4.223320 ACTTCAAAGCAATGTAACGGTG 57.777 40.909 0.00 0.00 0.00 4.94
3623 4220 4.336993 TCAACTTCAAAGCAATGTAACGGT 59.663 37.500 0.00 0.00 0.00 4.83
3624 4221 4.854399 TCAACTTCAAAGCAATGTAACGG 58.146 39.130 0.00 0.00 0.00 4.44
3656 4253 7.095910 TGTTTCTTTCTTTCATGACAAAAGCA 58.904 30.769 14.50 5.72 34.43 3.91
3668 4265 5.066505 TCTCAACCAGCTGTTTCTTTCTTTC 59.933 40.000 13.81 0.00 34.00 2.62
3669 4266 4.949856 TCTCAACCAGCTGTTTCTTTCTTT 59.050 37.500 13.81 0.00 34.00 2.52
3670 4267 4.526970 TCTCAACCAGCTGTTTCTTTCTT 58.473 39.130 13.81 0.00 34.00 2.52
3671 4268 4.156455 TCTCAACCAGCTGTTTCTTTCT 57.844 40.909 13.81 0.00 34.00 2.52
3735 4332 5.954296 AAGAAAACATGGACAGAGTGATG 57.046 39.130 0.00 0.00 0.00 3.07
3740 4337 5.799213 AGGTCTAAGAAAACATGGACAGAG 58.201 41.667 0.00 0.00 0.00 3.35
3750 4347 6.293462 GGACAACATGTGAGGTCTAAGAAAAC 60.293 42.308 19.05 3.45 0.00 2.43
3751 4348 5.763204 GGACAACATGTGAGGTCTAAGAAAA 59.237 40.000 19.05 0.00 0.00 2.29
3758 4355 3.864789 AAAGGACAACATGTGAGGTCT 57.135 42.857 19.05 7.44 0.00 3.85
3761 4358 5.547465 TGTAGTAAAGGACAACATGTGAGG 58.453 41.667 0.00 0.00 0.00 3.86
3767 4364 9.436957 CTTGTATCTTGTAGTAAAGGACAACAT 57.563 33.333 0.00 0.00 33.58 2.71
3805 4402 0.767375 AGGCCATCGTGATATGCCTT 59.233 50.000 15.60 4.82 42.25 4.35
3815 4415 0.613260 TTGTGCTTCTAGGCCATCGT 59.387 50.000 5.01 0.00 0.00 3.73
3816 4416 1.293924 CTTGTGCTTCTAGGCCATCG 58.706 55.000 5.01 0.00 0.00 3.84
3848 4454 3.386768 TCTCTTTGTCTCTGGAAACGG 57.613 47.619 0.00 0.00 38.41 4.44
3922 4534 6.620877 AGACATGTAAACTAACCATCTGGA 57.379 37.500 0.00 0.00 38.94 3.86
3952 4564 9.753674 AACTCCTTTCCAAATTATCATGTCTAA 57.246 29.630 0.00 0.00 0.00 2.10
3990 4602 7.201875 GGAACTGTTCCCTGTAAATGAAAGAAA 60.202 37.037 25.74 0.00 44.30 2.52
4009 4621 6.542370 CCGGTTAAAAGATCATATGGAACTGT 59.458 38.462 2.13 0.00 0.00 3.55
4037 4649 6.037500 GCATGAAATAGAAGTGCATCACTACA 59.962 38.462 0.00 0.00 44.62 2.74
4038 4650 6.425504 GCATGAAATAGAAGTGCATCACTAC 58.574 40.000 0.00 0.00 44.62 2.73
4076 4688 6.096001 AGGTTGCTTGCTTCTTTATAGAATGG 59.904 38.462 0.00 0.00 39.58 3.16
4120 4732 4.455877 GCTCCTAGTTGCTTTGCTTCTTTA 59.544 41.667 0.00 0.00 0.00 1.85
4137 4749 5.079643 AGAAAAGAAGGCAAAATGCTCCTA 58.920 37.500 2.00 0.00 44.28 2.94
4158 4773 0.178915 TCCCTCGGTCTCCCAAAAGA 60.179 55.000 0.00 0.00 0.00 2.52
4163 4778 2.944954 TCCTCCCTCGGTCTCCCA 60.945 66.667 0.00 0.00 0.00 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.