Multiple sequence alignment - TraesCS3D01G118300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G118300 chr3D 100.000 3617 0 0 1 3617 72251014 72254630 0.000000e+00 6680
1 TraesCS3D01G118300 chr3D 89.567 1016 66 17 858 1868 72648689 72649669 0.000000e+00 1253
2 TraesCS3D01G118300 chr3D 87.500 624 36 22 2519 3128 72650193 72650788 0.000000e+00 682
3 TraesCS3D01G118300 chr3D 89.948 388 30 5 2114 2492 72649817 72650204 3.240000e-135 492
4 TraesCS3D01G118300 chr3D 91.566 166 8 1 1897 2062 72649660 72649819 1.310000e-54 224
5 TraesCS3D01G118300 chr3D 89.313 131 14 0 3219 3349 72363951 72364081 8.030000e-37 165
6 TraesCS3D01G118300 chr3D 85.714 126 16 2 668 792 72648565 72648689 8.150000e-27 132
7 TraesCS3D01G118300 chr3A 94.451 3226 109 30 1 3210 84648316 84651487 0.000000e+00 4902
8 TraesCS3D01G118300 chr3A 90.131 993 63 14 858 1849 85270551 85271509 0.000000e+00 1258
9 TraesCS3D01G118300 chr3A 90.221 951 57 21 910 1858 85371404 85372320 0.000000e+00 1208
10 TraesCS3D01G118300 chr3A 86.231 995 100 17 858 1851 85464171 85465129 0.000000e+00 1044
11 TraesCS3D01G118300 chr3A 85.629 1002 107 18 858 1858 85533434 85534399 0.000000e+00 1018
12 TraesCS3D01G118300 chr3A 90.018 561 44 5 1938 2492 85271526 85272080 0.000000e+00 715
13 TraesCS3D01G118300 chr3A 89.539 564 42 8 1939 2492 85372329 85372885 0.000000e+00 699
14 TraesCS3D01G118300 chr3A 86.386 617 42 22 2526 3128 85372880 85373468 1.420000e-178 636
15 TraesCS3D01G118300 chr3A 85.737 624 46 23 2519 3128 85475534 85476128 1.430000e-173 619
16 TraesCS3D01G118300 chr3A 85.737 624 46 23 2519 3128 85544404 85544998 1.430000e-173 619
17 TraesCS3D01G118300 chr3A 88.736 435 37 7 1940 2368 85475095 85475523 4.140000e-144 521
18 TraesCS3D01G118300 chr3A 87.126 435 44 7 1940 2368 85543965 85544393 1.950000e-132 483
19 TraesCS3D01G118300 chr3A 87.213 305 18 13 2519 2810 85272069 85272365 9.680000e-86 327
20 TraesCS3D01G118300 chr3A 93.162 117 8 0 3501 3617 84664909 84665025 4.800000e-39 172
21 TraesCS3D01G118300 chr3A 92.920 113 5 2 3018 3127 85272516 85272628 1.040000e-35 161
22 TraesCS3D01G118300 chr3A 83.333 126 18 3 668 792 85270428 85270551 2.950000e-21 113
23 TraesCS3D01G118300 chr3B 95.130 2505 74 12 553 3023 118136178 118138668 0.000000e+00 3906
24 TraesCS3D01G118300 chr3B 87.926 969 75 11 1529 2491 118251778 118252710 0.000000e+00 1103
25 TraesCS3D01G118300 chr3B 86.174 839 62 17 670 1504 118250998 118251786 0.000000e+00 857
26 TraesCS3D01G118300 chr3B 86.699 624 38 23 2519 3128 118252700 118253292 0.000000e+00 651
27 TraesCS3D01G118300 chr3B 92.839 391 10 6 1 391 118135764 118136136 5.280000e-153 551
28 TraesCS3D01G118300 chr5A 90.310 258 22 2 3 258 238813135 238812879 5.790000e-88 335
29 TraesCS3D01G118300 chr5A 89.535 258 24 2 3 258 667812657 667812401 1.250000e-84 324
30 TraesCS3D01G118300 chr5A 82.083 240 35 4 3374 3611 648791810 648792043 7.920000e-47 198
31 TraesCS3D01G118300 chr2A 90.310 258 22 2 3 258 755507955 755507699 5.790000e-88 335
32 TraesCS3D01G118300 chr7A 89.535 258 23 3 3 258 211386168 211386423 1.250000e-84 324
33 TraesCS3D01G118300 chrUn 91.150 226 20 0 33 258 171033149 171032924 1.260000e-79 307
34 TraesCS3D01G118300 chrUn 81.448 221 23 10 3395 3611 76826609 76826815 8.030000e-37 165
35 TraesCS3D01G118300 chrUn 81.057 227 24 11 3395 3617 76837285 76837074 2.890000e-36 163
36 TraesCS3D01G118300 chr1B 91.150 226 20 0 33 258 683728485 683728260 1.260000e-79 307
37 TraesCS3D01G118300 chr6B 87.984 258 28 2 3 258 236546533 236546789 5.870000e-78 302
38 TraesCS3D01G118300 chr4B 85.156 256 31 3 3351 3605 516956302 516956053 4.630000e-64 255
39 TraesCS3D01G118300 chr4A 84.528 265 32 4 3351 3611 696090779 696091038 1.670000e-63 254
40 TraesCS3D01G118300 chr6D 83.650 263 28 10 3351 3611 308942759 308942510 2.170000e-57 233
41 TraesCS3D01G118300 chr7D 82.642 265 35 8 3351 3611 37973635 37973892 1.310000e-54 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G118300 chr3D 72251014 72254630 3616 False 6680.000000 6680 100.000000 1 3617 1 chr3D.!!$F1 3616
1 TraesCS3D01G118300 chr3D 72648565 72650788 2223 False 556.600000 1253 88.859000 668 3128 5 chr3D.!!$F3 2460
2 TraesCS3D01G118300 chr3A 84648316 84651487 3171 False 4902.000000 4902 94.451000 1 3210 1 chr3A.!!$F1 3209
3 TraesCS3D01G118300 chr3A 85464171 85465129 958 False 1044.000000 1044 86.231000 858 1851 1 chr3A.!!$F3 993
4 TraesCS3D01G118300 chr3A 85533434 85534399 965 False 1018.000000 1018 85.629000 858 1858 1 chr3A.!!$F4 1000
5 TraesCS3D01G118300 chr3A 85371404 85373468 2064 False 847.666667 1208 88.715333 910 3128 3 chr3A.!!$F6 2218
6 TraesCS3D01G118300 chr3A 85475095 85476128 1033 False 570.000000 619 87.236500 1940 3128 2 chr3A.!!$F7 1188
7 TraesCS3D01G118300 chr3A 85543965 85544998 1033 False 551.000000 619 86.431500 1940 3128 2 chr3A.!!$F8 1188
8 TraesCS3D01G118300 chr3A 85270428 85272628 2200 False 514.800000 1258 88.723000 668 3127 5 chr3A.!!$F5 2459
9 TraesCS3D01G118300 chr3B 118135764 118138668 2904 False 2228.500000 3906 93.984500 1 3023 2 chr3B.!!$F1 3022
10 TraesCS3D01G118300 chr3B 118250998 118253292 2294 False 870.333333 1103 86.933000 670 3128 3 chr3B.!!$F2 2458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
735 740 1.377202 CCACCTACAACTGCGCCAT 60.377 57.895 4.18 0.0 0.0 4.40 F
739 744 1.762957 ACCTACAACTGCGCCATAGAT 59.237 47.619 4.18 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2137 1.202348 GTAGTTGTGGAAGCCATTGCC 59.798 52.381 0.0 0.0 38.69 4.52 R
2883 2962 6.328672 AGGTAAGATACTCCAATGCTCTCAAT 59.671 38.462 0.0 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 7.872138 TCTTATTGGGAAGTAGATTGGATTGT 58.128 34.615 0.00 0.00 0.00 2.71
221 222 5.665459 ACTATCTTCATCAAGTAAGCGCTT 58.335 37.500 27.97 27.97 0.00 4.68
391 392 6.162777 GGGCTCTTCATGTAGAGATGAATAC 58.837 44.000 27.87 11.51 43.54 1.89
392 393 5.861251 GGCTCTTCATGTAGAGATGAATACG 59.139 44.000 27.87 4.67 43.54 3.06
393 394 5.861251 GCTCTTCATGTAGAGATGAATACGG 59.139 44.000 27.87 4.03 43.54 4.02
394 395 6.294231 GCTCTTCATGTAGAGATGAATACGGA 60.294 42.308 27.87 0.00 43.54 4.69
395 396 7.208225 TCTTCATGTAGAGATGAATACGGAG 57.792 40.000 0.00 0.00 40.68 4.63
396 397 6.773200 TCTTCATGTAGAGATGAATACGGAGT 59.227 38.462 0.00 0.00 40.68 3.85
416 417 9.052759 ACGGAGTATATTGTAATCAATGTTTCC 57.947 33.333 4.06 7.07 41.94 3.13
607 611 3.760684 TGGTTTGCATTTGCCAAAACTTT 59.239 34.783 14.38 0.00 41.18 2.66
613 617 3.204526 CATTTGCCAAAACTTTGAGGCA 58.795 40.909 14.06 14.06 40.55 4.75
616 620 2.660572 TGCCAAAACTTTGAGGCACTA 58.339 42.857 14.06 0.00 41.55 2.74
617 621 2.360801 TGCCAAAACTTTGAGGCACTAC 59.639 45.455 14.06 0.00 41.55 2.73
618 622 2.360801 GCCAAAACTTTGAGGCACTACA 59.639 45.455 11.53 0.00 41.55 2.74
619 623 3.795488 GCCAAAACTTTGAGGCACTACAC 60.795 47.826 11.53 0.00 41.55 2.90
620 624 3.380004 CCAAAACTTTGAGGCACTACACA 59.620 43.478 3.72 0.00 41.55 3.72
657 661 3.120086 AAACCACAGCCAGCCGAGT 62.120 57.895 0.00 0.00 0.00 4.18
708 712 3.571748 TCCTCGACGGATCTTCTGT 57.428 52.632 0.00 0.00 39.01 3.41
730 735 2.032071 ACGCCCACCTACAACTGC 59.968 61.111 0.00 0.00 0.00 4.40
735 740 1.377202 CCACCTACAACTGCGCCAT 60.377 57.895 4.18 0.00 0.00 4.40
739 744 1.762957 ACCTACAACTGCGCCATAGAT 59.237 47.619 4.18 0.00 0.00 1.98
905 911 2.006888 CTCTTTTTATTCGCCGCTCCA 58.993 47.619 0.00 0.00 0.00 3.86
906 912 2.418628 CTCTTTTTATTCGCCGCTCCAA 59.581 45.455 0.00 0.00 0.00 3.53
907 913 2.160813 TCTTTTTATTCGCCGCTCCAAC 59.839 45.455 0.00 0.00 0.00 3.77
2714 2793 1.167851 CTTTTCCTTCGCCAGCATGA 58.832 50.000 0.00 0.00 39.69 3.07
2883 2962 1.071699 GGAGCCTGTACTTTGTCACCA 59.928 52.381 0.00 0.00 0.00 4.17
2903 2989 4.411540 ACCATTGAGAGCATTGGAGTATCT 59.588 41.667 12.26 0.00 44.52 1.98
2909 2995 6.373759 TGAGAGCATTGGAGTATCTTACCTA 58.626 40.000 0.00 0.00 33.73 3.08
3128 3219 2.905075 CTGGTCAAATGCGTATCCTCA 58.095 47.619 0.00 0.00 0.00 3.86
3130 3221 1.940613 GGTCAAATGCGTATCCTCACC 59.059 52.381 0.00 0.00 0.00 4.02
3131 3222 2.420129 GGTCAAATGCGTATCCTCACCT 60.420 50.000 0.00 0.00 0.00 4.00
3132 3223 3.270877 GTCAAATGCGTATCCTCACCTT 58.729 45.455 0.00 0.00 0.00 3.50
3133 3224 3.689649 GTCAAATGCGTATCCTCACCTTT 59.310 43.478 0.00 0.00 0.00 3.11
3134 3225 4.156008 GTCAAATGCGTATCCTCACCTTTT 59.844 41.667 0.00 0.00 0.00 2.27
3135 3226 4.155826 TCAAATGCGTATCCTCACCTTTTG 59.844 41.667 0.00 0.00 0.00 2.44
3149 3240 1.523154 CTTTTGCAGTGGCCGCCTTA 61.523 55.000 14.07 0.00 40.13 2.69
3150 3241 1.109920 TTTTGCAGTGGCCGCCTTAA 61.110 50.000 14.07 2.40 40.13 1.85
3154 3245 1.971167 CAGTGGCCGCCTTAAAGCA 60.971 57.895 14.07 0.00 0.00 3.91
3163 3254 1.399727 CGCCTTAAAGCAACTCCAACG 60.400 52.381 0.00 0.00 0.00 4.10
3164 3255 1.666023 GCCTTAAAGCAACTCCAACGC 60.666 52.381 0.00 0.00 0.00 4.84
3165 3256 1.399727 CCTTAAAGCAACTCCAACGCG 60.400 52.381 3.53 3.53 0.00 6.01
3166 3257 0.040781 TTAAAGCAACTCCAACGCGC 60.041 50.000 5.73 0.00 0.00 6.86
3167 3258 2.165362 TAAAGCAACTCCAACGCGCG 62.165 55.000 30.96 30.96 0.00 6.86
3183 3274 1.226660 GCGCGGACCCAAATGAATG 60.227 57.895 8.83 0.00 0.00 2.67
3195 3286 7.435192 GGACCCAAATGAATGACGATTTTATTC 59.565 37.037 0.00 0.00 0.00 1.75
3219 3310 2.421751 TTTTCTGTTTGGGTCGGTCA 57.578 45.000 0.00 0.00 0.00 4.02
3220 3311 2.649531 TTTCTGTTTGGGTCGGTCAT 57.350 45.000 0.00 0.00 0.00 3.06
3221 3312 1.890876 TTCTGTTTGGGTCGGTCATG 58.109 50.000 0.00 0.00 0.00 3.07
3222 3313 0.762418 TCTGTTTGGGTCGGTCATGT 59.238 50.000 0.00 0.00 0.00 3.21
3223 3314 1.142060 TCTGTTTGGGTCGGTCATGTT 59.858 47.619 0.00 0.00 0.00 2.71
3224 3315 2.369203 TCTGTTTGGGTCGGTCATGTTA 59.631 45.455 0.00 0.00 0.00 2.41
3225 3316 2.742053 CTGTTTGGGTCGGTCATGTTAG 59.258 50.000 0.00 0.00 0.00 2.34
3226 3317 2.369203 TGTTTGGGTCGGTCATGTTAGA 59.631 45.455 0.00 0.00 0.00 2.10
3227 3318 3.181453 TGTTTGGGTCGGTCATGTTAGAA 60.181 43.478 0.00 0.00 0.00 2.10
3228 3319 2.754946 TGGGTCGGTCATGTTAGAAC 57.245 50.000 0.00 0.00 0.00 3.01
3229 3320 2.253610 TGGGTCGGTCATGTTAGAACT 58.746 47.619 0.00 0.00 0.00 3.01
3230 3321 2.028476 TGGGTCGGTCATGTTAGAACTG 60.028 50.000 0.00 0.00 0.00 3.16
3231 3322 2.618053 GGTCGGTCATGTTAGAACTGG 58.382 52.381 0.00 0.00 0.00 4.00
3232 3323 2.028385 GGTCGGTCATGTTAGAACTGGT 60.028 50.000 0.00 0.00 0.00 4.00
3233 3324 2.993899 GTCGGTCATGTTAGAACTGGTG 59.006 50.000 0.00 0.00 0.00 4.17
3234 3325 2.894765 TCGGTCATGTTAGAACTGGTGA 59.105 45.455 0.00 0.00 0.00 4.02
3235 3326 3.322541 TCGGTCATGTTAGAACTGGTGAA 59.677 43.478 0.00 0.00 0.00 3.18
3236 3327 4.062293 CGGTCATGTTAGAACTGGTGAAA 58.938 43.478 0.00 0.00 0.00 2.69
3237 3328 4.152402 CGGTCATGTTAGAACTGGTGAAAG 59.848 45.833 0.00 0.00 0.00 2.62
3238 3329 4.083271 GGTCATGTTAGAACTGGTGAAAGC 60.083 45.833 0.00 0.00 0.00 3.51
3239 3330 3.745975 TCATGTTAGAACTGGTGAAAGCG 59.254 43.478 0.00 0.00 36.92 4.68
3240 3331 3.188159 TGTTAGAACTGGTGAAAGCGT 57.812 42.857 0.00 0.00 36.92 5.07
3241 3332 3.537580 TGTTAGAACTGGTGAAAGCGTT 58.462 40.909 0.00 0.00 36.92 4.84
3242 3333 3.942748 TGTTAGAACTGGTGAAAGCGTTT 59.057 39.130 0.00 0.00 36.92 3.60
3243 3334 4.034742 TGTTAGAACTGGTGAAAGCGTTTC 59.965 41.667 4.24 4.24 40.08 2.78
3244 3335 2.919228 AGAACTGGTGAAAGCGTTTCT 58.081 42.857 10.41 0.00 40.32 2.52
3245 3336 4.067972 AGAACTGGTGAAAGCGTTTCTA 57.932 40.909 10.41 0.00 40.32 2.10
3246 3337 3.808174 AGAACTGGTGAAAGCGTTTCTAC 59.192 43.478 10.41 2.25 40.32 2.59
3247 3338 3.470645 ACTGGTGAAAGCGTTTCTACT 57.529 42.857 10.41 0.00 40.32 2.57
3248 3339 3.805207 ACTGGTGAAAGCGTTTCTACTT 58.195 40.909 10.41 0.00 40.32 2.24
3249 3340 4.196971 ACTGGTGAAAGCGTTTCTACTTT 58.803 39.130 10.41 0.00 40.32 2.66
3254 3345 4.309254 GAAAGCGTTTCTACTTTCCTCG 57.691 45.455 4.52 0.00 43.82 4.63
3255 3346 3.655276 AAGCGTTTCTACTTTCCTCGA 57.345 42.857 0.00 0.00 0.00 4.04
3256 3347 3.219052 AGCGTTTCTACTTTCCTCGAG 57.781 47.619 5.13 5.13 0.00 4.04
3257 3348 2.094649 AGCGTTTCTACTTTCCTCGAGG 60.095 50.000 26.32 26.32 0.00 4.63
3258 3349 2.877335 CGTTTCTACTTTCCTCGAGGG 58.123 52.381 30.80 17.51 35.41 4.30
3259 3350 2.490903 CGTTTCTACTTTCCTCGAGGGA 59.509 50.000 30.80 21.60 43.41 4.20
3260 3351 3.427773 CGTTTCTACTTTCCTCGAGGGAG 60.428 52.174 30.80 27.42 46.01 4.30
3261 3352 3.733883 TTCTACTTTCCTCGAGGGAGA 57.266 47.619 30.80 20.53 46.01 3.71
3263 3354 1.679153 CTACTTTCCTCGAGGGAGAGC 59.321 57.143 30.80 0.00 46.73 4.09
3264 3355 0.973496 ACTTTCCTCGAGGGAGAGCC 60.973 60.000 30.80 0.00 46.73 4.70
3265 3356 0.972983 CTTTCCTCGAGGGAGAGCCA 60.973 60.000 30.80 7.18 46.01 4.75
3266 3357 1.258445 TTTCCTCGAGGGAGAGCCAC 61.258 60.000 30.80 0.00 46.01 5.01
3267 3358 2.363018 CCTCGAGGGAGAGCCACA 60.363 66.667 24.62 0.00 43.27 4.17
3268 3359 2.422231 CCTCGAGGGAGAGCCACAG 61.422 68.421 24.62 0.00 43.27 3.66
3269 3360 1.379176 CTCGAGGGAGAGCCACAGA 60.379 63.158 3.91 0.00 43.27 3.41
3270 3361 1.662438 CTCGAGGGAGAGCCACAGAC 61.662 65.000 3.91 0.00 43.27 3.51
3271 3362 2.888863 GAGGGAGAGCCACAGACG 59.111 66.667 0.00 0.00 35.15 4.18
3272 3363 1.979693 GAGGGAGAGCCACAGACGT 60.980 63.158 0.00 0.00 35.15 4.34
3273 3364 1.939769 GAGGGAGAGCCACAGACGTC 61.940 65.000 7.70 7.70 35.15 4.34
3274 3365 1.979693 GGGAGAGCCACAGACGTCT 60.980 63.158 13.58 13.58 35.15 4.18
3275 3366 0.680280 GGGAGAGCCACAGACGTCTA 60.680 60.000 19.57 0.00 35.15 2.59
3276 3367 1.394618 GGAGAGCCACAGACGTCTAT 58.605 55.000 19.57 3.28 0.00 1.98
3277 3368 1.751924 GGAGAGCCACAGACGTCTATT 59.248 52.381 19.57 5.29 0.00 1.73
3278 3369 2.166664 GGAGAGCCACAGACGTCTATTT 59.833 50.000 19.57 2.42 0.00 1.40
3279 3370 3.380637 GGAGAGCCACAGACGTCTATTTA 59.619 47.826 19.57 0.00 0.00 1.40
3280 3371 4.038162 GGAGAGCCACAGACGTCTATTTAT 59.962 45.833 19.57 4.53 0.00 1.40
3281 3372 5.452077 GGAGAGCCACAGACGTCTATTTATT 60.452 44.000 19.57 2.47 0.00 1.40
3282 3373 5.352284 AGAGCCACAGACGTCTATTTATTG 58.648 41.667 19.57 7.49 0.00 1.90
3283 3374 5.127194 AGAGCCACAGACGTCTATTTATTGA 59.873 40.000 19.57 0.00 0.00 2.57
3284 3375 5.352284 AGCCACAGACGTCTATTTATTGAG 58.648 41.667 19.57 4.92 0.00 3.02
3285 3376 4.508124 GCCACAGACGTCTATTTATTGAGG 59.492 45.833 19.57 13.56 0.00 3.86
3286 3377 4.508124 CCACAGACGTCTATTTATTGAGGC 59.492 45.833 19.57 0.00 0.00 4.70
3287 3378 5.109210 CACAGACGTCTATTTATTGAGGCA 58.891 41.667 19.57 0.00 0.00 4.75
3288 3379 5.233050 CACAGACGTCTATTTATTGAGGCAG 59.767 44.000 19.57 2.89 0.00 4.85
3289 3380 5.127194 ACAGACGTCTATTTATTGAGGCAGA 59.873 40.000 19.57 0.00 0.00 4.26
3290 3381 6.042777 CAGACGTCTATTTATTGAGGCAGAA 58.957 40.000 19.57 0.00 0.00 3.02
3291 3382 6.019479 CAGACGTCTATTTATTGAGGCAGAAC 60.019 42.308 19.57 0.00 0.00 3.01
3292 3383 5.116882 ACGTCTATTTATTGAGGCAGAACC 58.883 41.667 0.00 0.00 39.61 3.62
3301 3392 4.481195 GGCAGAACCTTGCTGTGA 57.519 55.556 0.00 0.00 43.57 3.58
3302 3393 2.719376 GGCAGAACCTTGCTGTGAA 58.281 52.632 0.00 0.00 43.57 3.18
3303 3394 0.595095 GGCAGAACCTTGCTGTGAAG 59.405 55.000 0.00 0.00 43.57 3.02
3304 3395 1.312815 GCAGAACCTTGCTGTGAAGT 58.687 50.000 0.00 0.00 40.89 3.01
3305 3396 2.494059 GCAGAACCTTGCTGTGAAGTA 58.506 47.619 0.00 0.00 40.89 2.24
3306 3397 2.224314 GCAGAACCTTGCTGTGAAGTAC 59.776 50.000 0.00 0.00 40.89 2.73
3307 3398 3.466836 CAGAACCTTGCTGTGAAGTACA 58.533 45.455 0.00 0.00 37.78 2.90
3308 3399 3.876914 CAGAACCTTGCTGTGAAGTACAA 59.123 43.478 0.00 0.00 39.20 2.41
3309 3400 4.024556 CAGAACCTTGCTGTGAAGTACAAG 60.025 45.833 0.00 0.00 39.20 3.16
3310 3401 3.838244 ACCTTGCTGTGAAGTACAAGA 57.162 42.857 3.29 0.00 41.59 3.02
3311 3402 3.733337 ACCTTGCTGTGAAGTACAAGAG 58.267 45.455 3.29 0.00 41.59 2.85
3312 3403 3.388024 ACCTTGCTGTGAAGTACAAGAGA 59.612 43.478 3.29 0.00 41.59 3.10
3313 3404 4.040952 ACCTTGCTGTGAAGTACAAGAGAT 59.959 41.667 3.29 0.00 41.59 2.75
3314 3405 4.391216 CCTTGCTGTGAAGTACAAGAGATG 59.609 45.833 3.29 0.00 41.59 2.90
3315 3406 3.930336 TGCTGTGAAGTACAAGAGATGG 58.070 45.455 0.00 0.00 39.20 3.51
3316 3407 3.578282 TGCTGTGAAGTACAAGAGATGGA 59.422 43.478 0.00 0.00 39.20 3.41
3317 3408 4.223700 TGCTGTGAAGTACAAGAGATGGAT 59.776 41.667 0.00 0.00 39.20 3.41
3318 3409 5.181748 GCTGTGAAGTACAAGAGATGGATT 58.818 41.667 0.00 0.00 39.20 3.01
3319 3410 6.070824 TGCTGTGAAGTACAAGAGATGGATTA 60.071 38.462 0.00 0.00 39.20 1.75
3320 3411 6.478344 GCTGTGAAGTACAAGAGATGGATTAG 59.522 42.308 0.00 0.00 39.20 1.73
3321 3412 6.878317 TGTGAAGTACAAGAGATGGATTAGG 58.122 40.000 0.00 0.00 36.06 2.69
3322 3413 6.667848 TGTGAAGTACAAGAGATGGATTAGGA 59.332 38.462 0.00 0.00 36.06 2.94
3323 3414 7.180229 TGTGAAGTACAAGAGATGGATTAGGAA 59.820 37.037 0.00 0.00 36.06 3.36
3324 3415 8.207545 GTGAAGTACAAGAGATGGATTAGGAAT 58.792 37.037 0.00 0.00 0.00 3.01
3325 3416 8.424918 TGAAGTACAAGAGATGGATTAGGAATC 58.575 37.037 0.00 0.00 37.17 2.52
3339 3430 3.853355 AGGAATCCAGCTATCACAAGG 57.147 47.619 0.61 0.00 0.00 3.61
3340 3431 3.387962 AGGAATCCAGCTATCACAAGGA 58.612 45.455 0.61 0.00 0.00 3.36
3341 3432 3.390639 AGGAATCCAGCTATCACAAGGAG 59.609 47.826 0.61 0.00 0.00 3.69
3342 3433 3.389329 GGAATCCAGCTATCACAAGGAGA 59.611 47.826 0.00 0.00 0.00 3.71
3343 3434 4.041444 GGAATCCAGCTATCACAAGGAGAT 59.959 45.833 0.00 0.00 0.00 2.75
3344 3435 5.247110 GGAATCCAGCTATCACAAGGAGATA 59.753 44.000 0.00 0.00 0.00 1.98
3345 3436 5.999205 ATCCAGCTATCACAAGGAGATAG 57.001 43.478 5.97 5.97 44.90 2.08
3346 3437 5.066913 TCCAGCTATCACAAGGAGATAGA 57.933 43.478 12.89 0.00 44.91 1.98
3347 3438 5.458595 TCCAGCTATCACAAGGAGATAGAA 58.541 41.667 12.89 0.00 44.91 2.10
3348 3439 5.538053 TCCAGCTATCACAAGGAGATAGAAG 59.462 44.000 12.89 5.33 44.91 2.85
3349 3440 5.229423 CAGCTATCACAAGGAGATAGAAGC 58.771 45.833 12.89 2.25 44.91 3.86
3350 3441 4.283212 AGCTATCACAAGGAGATAGAAGCC 59.717 45.833 12.89 0.00 44.91 4.35
3351 3442 4.039730 GCTATCACAAGGAGATAGAAGCCA 59.960 45.833 12.89 0.00 44.91 4.75
3352 3443 3.895232 TCACAAGGAGATAGAAGCCAC 57.105 47.619 0.00 0.00 0.00 5.01
3353 3444 3.445008 TCACAAGGAGATAGAAGCCACT 58.555 45.455 0.00 0.00 0.00 4.00
3354 3445 3.840666 TCACAAGGAGATAGAAGCCACTT 59.159 43.478 0.00 0.00 0.00 3.16
3355 3446 4.287067 TCACAAGGAGATAGAAGCCACTTT 59.713 41.667 0.00 0.00 0.00 2.66
3356 3447 5.483937 TCACAAGGAGATAGAAGCCACTTTA 59.516 40.000 0.00 0.00 0.00 1.85
3357 3448 5.814705 CACAAGGAGATAGAAGCCACTTTAG 59.185 44.000 0.00 0.00 0.00 1.85
3358 3449 4.681074 AGGAGATAGAAGCCACTTTAGC 57.319 45.455 0.00 0.00 0.00 3.09
3359 3450 4.294347 AGGAGATAGAAGCCACTTTAGCT 58.706 43.478 0.00 0.00 44.19 3.32
3360 3451 5.459505 AGGAGATAGAAGCCACTTTAGCTA 58.540 41.667 0.00 0.00 40.49 3.32
3361 3452 5.538433 AGGAGATAGAAGCCACTTTAGCTAG 59.462 44.000 0.00 0.00 40.49 3.42
3362 3453 5.536916 GGAGATAGAAGCCACTTTAGCTAGA 59.463 44.000 0.00 0.00 40.49 2.43
3363 3454 6.210584 GGAGATAGAAGCCACTTTAGCTAGAT 59.789 42.308 0.00 0.00 40.49 1.98
3364 3455 7.256154 GGAGATAGAAGCCACTTTAGCTAGATT 60.256 40.741 0.00 0.00 40.49 2.40
3365 3456 8.028652 AGATAGAAGCCACTTTAGCTAGATTT 57.971 34.615 0.00 0.00 40.49 2.17
3366 3457 8.490311 AGATAGAAGCCACTTTAGCTAGATTTT 58.510 33.333 0.00 0.00 40.49 1.82
3367 3458 9.765795 GATAGAAGCCACTTTAGCTAGATTTTA 57.234 33.333 0.00 0.00 40.49 1.52
3368 3459 9.771534 ATAGAAGCCACTTTAGCTAGATTTTAG 57.228 33.333 0.00 0.00 40.49 1.85
3369 3460 7.625469 AGAAGCCACTTTAGCTAGATTTTAGT 58.375 34.615 0.00 0.00 40.49 2.24
3370 3461 7.766738 AGAAGCCACTTTAGCTAGATTTTAGTC 59.233 37.037 0.00 0.00 40.49 2.59
3371 3462 6.947464 AGCCACTTTAGCTAGATTTTAGTCA 58.053 36.000 0.00 0.00 39.29 3.41
3372 3463 7.044798 AGCCACTTTAGCTAGATTTTAGTCAG 58.955 38.462 0.00 0.00 39.29 3.51
3373 3464 6.819146 GCCACTTTAGCTAGATTTTAGTCAGT 59.181 38.462 0.00 0.00 0.00 3.41
3374 3465 7.334671 GCCACTTTAGCTAGATTTTAGTCAGTT 59.665 37.037 0.00 0.00 0.00 3.16
3375 3466 8.660373 CCACTTTAGCTAGATTTTAGTCAGTTG 58.340 37.037 0.00 0.00 0.00 3.16
3376 3467 9.424319 CACTTTAGCTAGATTTTAGTCAGTTGA 57.576 33.333 0.00 0.00 0.00 3.18
3377 3468 9.425577 ACTTTAGCTAGATTTTAGTCAGTTGAC 57.574 33.333 4.09 4.09 45.08 3.18
3398 3489 9.590088 GTTGACTTTTAGTTATTTGGTTAGTCG 57.410 33.333 0.00 0.00 33.89 4.18
3399 3490 9.545105 TTGACTTTTAGTTATTTGGTTAGTCGA 57.455 29.630 0.00 0.00 33.89 4.20
3400 3491 9.715121 TGACTTTTAGTTATTTGGTTAGTCGAT 57.285 29.630 0.00 0.00 33.89 3.59
3426 3517 8.553459 TTTTTGGCTCTTGAATTGTGTTTTAA 57.447 26.923 0.00 0.00 0.00 1.52
3427 3518 7.769272 TTTGGCTCTTGAATTGTGTTTTAAG 57.231 32.000 0.00 0.00 0.00 1.85
3428 3519 6.707440 TGGCTCTTGAATTGTGTTTTAAGA 57.293 33.333 0.00 0.00 32.34 2.10
3429 3520 7.288810 TGGCTCTTGAATTGTGTTTTAAGAT 57.711 32.000 0.00 0.00 32.71 2.40
3430 3521 7.725251 TGGCTCTTGAATTGTGTTTTAAGATT 58.275 30.769 0.00 0.00 32.71 2.40
3431 3522 8.203485 TGGCTCTTGAATTGTGTTTTAAGATTT 58.797 29.630 0.00 0.00 32.71 2.17
3432 3523 8.490355 GGCTCTTGAATTGTGTTTTAAGATTTG 58.510 33.333 0.00 0.00 32.71 2.32
3433 3524 9.034544 GCTCTTGAATTGTGTTTTAAGATTTGT 57.965 29.630 0.00 0.00 32.71 2.83
3435 3526 9.868277 TCTTGAATTGTGTTTTAAGATTTGTGT 57.132 25.926 0.00 0.00 29.34 3.72
3436 3527 9.904647 CTTGAATTGTGTTTTAAGATTTGTGTG 57.095 29.630 0.00 0.00 0.00 3.82
3437 3528 8.417780 TGAATTGTGTTTTAAGATTTGTGTGG 57.582 30.769 0.00 0.00 0.00 4.17
3438 3529 8.037758 TGAATTGTGTTTTAAGATTTGTGTGGT 58.962 29.630 0.00 0.00 0.00 4.16
3439 3530 8.785329 AATTGTGTTTTAAGATTTGTGTGGTT 57.215 26.923 0.00 0.00 0.00 3.67
3440 3531 7.820044 TTGTGTTTTAAGATTTGTGTGGTTC 57.180 32.000 0.00 0.00 0.00 3.62
3441 3532 7.164230 TGTGTTTTAAGATTTGTGTGGTTCT 57.836 32.000 0.00 0.00 0.00 3.01
3442 3533 7.607250 TGTGTTTTAAGATTTGTGTGGTTCTT 58.393 30.769 0.00 0.00 33.29 2.52
3443 3534 7.757624 TGTGTTTTAAGATTTGTGTGGTTCTTC 59.242 33.333 0.00 0.00 31.29 2.87
3444 3535 7.973944 GTGTTTTAAGATTTGTGTGGTTCTTCT 59.026 33.333 0.00 0.00 31.29 2.85
3445 3536 8.527810 TGTTTTAAGATTTGTGTGGTTCTTCTT 58.472 29.630 0.00 0.00 31.29 2.52
3446 3537 9.366216 GTTTTAAGATTTGTGTGGTTCTTCTTT 57.634 29.630 0.00 0.00 31.29 2.52
3447 3538 9.936759 TTTTAAGATTTGTGTGGTTCTTCTTTT 57.063 25.926 0.00 0.00 31.29 2.27
3448 3539 9.936759 TTTAAGATTTGTGTGGTTCTTCTTTTT 57.063 25.926 0.00 0.00 31.29 1.94
3466 3557 2.842208 TTTCTGTCACGTTTTGCTGG 57.158 45.000 0.00 0.00 0.00 4.85
3467 3558 1.745232 TTCTGTCACGTTTTGCTGGT 58.255 45.000 0.00 0.00 0.00 4.00
3468 3559 1.013596 TCTGTCACGTTTTGCTGGTG 58.986 50.000 0.00 0.00 0.00 4.17
3469 3560 0.732571 CTGTCACGTTTTGCTGGTGT 59.267 50.000 0.00 0.00 33.51 4.16
3470 3561 1.937223 CTGTCACGTTTTGCTGGTGTA 59.063 47.619 0.00 0.00 33.51 2.90
3471 3562 1.666700 TGTCACGTTTTGCTGGTGTAC 59.333 47.619 0.00 0.00 33.51 2.90
3472 3563 1.937899 GTCACGTTTTGCTGGTGTACT 59.062 47.619 0.00 0.00 33.51 2.73
3473 3564 1.937223 TCACGTTTTGCTGGTGTACTG 59.063 47.619 0.00 0.00 33.51 2.74
3474 3565 1.002900 CACGTTTTGCTGGTGTACTGG 60.003 52.381 0.00 0.00 0.00 4.00
3475 3566 0.591170 CGTTTTGCTGGTGTACTGGG 59.409 55.000 0.00 0.00 0.00 4.45
3476 3567 0.313987 GTTTTGCTGGTGTACTGGGC 59.686 55.000 0.00 0.00 0.00 5.36
3477 3568 0.184933 TTTTGCTGGTGTACTGGGCT 59.815 50.000 0.00 0.00 0.00 5.19
3478 3569 0.537143 TTTGCTGGTGTACTGGGCTG 60.537 55.000 0.00 0.00 0.00 4.85
3479 3570 2.045926 GCTGGTGTACTGGGCTGG 60.046 66.667 0.00 0.00 0.00 4.85
3480 3571 2.671070 CTGGTGTACTGGGCTGGG 59.329 66.667 0.00 0.00 0.00 4.45
3481 3572 3.628646 CTGGTGTACTGGGCTGGGC 62.629 68.421 0.00 0.00 0.00 5.36
3482 3573 3.330720 GGTGTACTGGGCTGGGCT 61.331 66.667 0.00 0.00 0.00 5.19
3483 3574 2.045926 GTGTACTGGGCTGGGCTG 60.046 66.667 0.00 0.00 0.00 4.85
3484 3575 2.529136 TGTACTGGGCTGGGCTGT 60.529 61.111 0.00 0.00 0.00 4.40
3485 3576 2.153401 TGTACTGGGCTGGGCTGTT 61.153 57.895 0.00 0.00 0.00 3.16
3486 3577 1.074951 GTACTGGGCTGGGCTGTTT 59.925 57.895 0.00 0.00 0.00 2.83
3487 3578 1.074775 TACTGGGCTGGGCTGTTTG 59.925 57.895 0.00 0.00 0.00 2.93
3488 3579 1.422977 TACTGGGCTGGGCTGTTTGA 61.423 55.000 0.00 0.00 0.00 2.69
3489 3580 1.531365 CTGGGCTGGGCTGTTTGAA 60.531 57.895 0.00 0.00 0.00 2.69
3490 3581 0.901580 CTGGGCTGGGCTGTTTGAAT 60.902 55.000 0.00 0.00 0.00 2.57
3491 3582 0.471591 TGGGCTGGGCTGTTTGAATT 60.472 50.000 0.00 0.00 0.00 2.17
3492 3583 0.686789 GGGCTGGGCTGTTTGAATTT 59.313 50.000 0.00 0.00 0.00 1.82
3493 3584 1.608801 GGGCTGGGCTGTTTGAATTTG 60.609 52.381 0.00 0.00 0.00 2.32
3494 3585 1.344114 GGCTGGGCTGTTTGAATTTGA 59.656 47.619 0.00 0.00 0.00 2.69
3495 3586 2.407090 GCTGGGCTGTTTGAATTTGAC 58.593 47.619 0.00 0.00 0.00 3.18
3496 3587 2.036346 GCTGGGCTGTTTGAATTTGACT 59.964 45.455 0.00 0.00 0.00 3.41
3497 3588 3.645884 CTGGGCTGTTTGAATTTGACTG 58.354 45.455 0.00 0.00 0.00 3.51
3498 3589 3.295093 TGGGCTGTTTGAATTTGACTGA 58.705 40.909 0.00 0.00 0.00 3.41
3499 3590 3.068024 TGGGCTGTTTGAATTTGACTGAC 59.932 43.478 0.00 0.00 0.00 3.51
3500 3591 3.319122 GGGCTGTTTGAATTTGACTGACT 59.681 43.478 0.00 0.00 0.00 3.41
3501 3592 4.540824 GGCTGTTTGAATTTGACTGACTC 58.459 43.478 0.00 0.00 0.00 3.36
3502 3593 4.540824 GCTGTTTGAATTTGACTGACTCC 58.459 43.478 0.00 0.00 0.00 3.85
3503 3594 4.276926 GCTGTTTGAATTTGACTGACTCCT 59.723 41.667 0.00 0.00 0.00 3.69
3504 3595 5.470098 GCTGTTTGAATTTGACTGACTCCTA 59.530 40.000 0.00 0.00 0.00 2.94
3505 3596 6.150140 GCTGTTTGAATTTGACTGACTCCTAT 59.850 38.462 0.00 0.00 0.00 2.57
3506 3597 7.308830 GCTGTTTGAATTTGACTGACTCCTATT 60.309 37.037 0.00 0.00 0.00 1.73
3507 3598 8.463930 TGTTTGAATTTGACTGACTCCTATTT 57.536 30.769 0.00 0.00 0.00 1.40
3508 3599 8.912988 TGTTTGAATTTGACTGACTCCTATTTT 58.087 29.630 0.00 0.00 0.00 1.82
3509 3600 9.185192 GTTTGAATTTGACTGACTCCTATTTTG 57.815 33.333 0.00 0.00 0.00 2.44
3510 3601 7.452880 TGAATTTGACTGACTCCTATTTTGG 57.547 36.000 0.00 0.00 0.00 3.28
3511 3602 6.434028 TGAATTTGACTGACTCCTATTTTGGG 59.566 38.462 0.00 0.00 0.00 4.12
3512 3603 3.350219 TGACTGACTCCTATTTTGGGC 57.650 47.619 0.00 0.00 0.00 5.36
3513 3604 2.280628 GACTGACTCCTATTTTGGGCG 58.719 52.381 0.00 0.00 0.00 6.13
3514 3605 1.906574 ACTGACTCCTATTTTGGGCGA 59.093 47.619 0.00 0.00 0.00 5.54
3515 3606 2.093447 ACTGACTCCTATTTTGGGCGAG 60.093 50.000 0.00 0.00 0.00 5.03
3516 3607 1.906574 TGACTCCTATTTTGGGCGAGT 59.093 47.619 0.00 0.00 36.53 4.18
3517 3608 2.093658 TGACTCCTATTTTGGGCGAGTC 60.094 50.000 8.26 8.26 46.24 3.36
3518 3609 1.906574 ACTCCTATTTTGGGCGAGTCA 59.093 47.619 0.00 0.00 0.00 3.41
3519 3610 2.304761 ACTCCTATTTTGGGCGAGTCAA 59.695 45.455 0.00 0.00 0.00 3.18
3520 3611 3.054361 ACTCCTATTTTGGGCGAGTCAAT 60.054 43.478 0.00 0.00 0.00 2.57
3521 3612 3.947834 CTCCTATTTTGGGCGAGTCAATT 59.052 43.478 0.00 0.00 0.00 2.32
3522 3613 4.340617 TCCTATTTTGGGCGAGTCAATTT 58.659 39.130 0.00 0.00 0.00 1.82
3523 3614 4.770010 TCCTATTTTGGGCGAGTCAATTTT 59.230 37.500 0.00 0.00 0.00 1.82
3524 3615 4.864247 CCTATTTTGGGCGAGTCAATTTTG 59.136 41.667 0.00 0.00 0.00 2.44
3525 3616 3.810310 TTTTGGGCGAGTCAATTTTGT 57.190 38.095 0.00 0.00 0.00 2.83
3526 3617 3.810310 TTTGGGCGAGTCAATTTTGTT 57.190 38.095 0.00 0.00 0.00 2.83
3527 3618 3.363341 TTGGGCGAGTCAATTTTGTTC 57.637 42.857 0.00 0.00 0.00 3.18
3528 3619 2.582052 TGGGCGAGTCAATTTTGTTCT 58.418 42.857 0.00 0.00 0.00 3.01
3529 3620 2.955660 TGGGCGAGTCAATTTTGTTCTT 59.044 40.909 0.00 0.00 0.00 2.52
3530 3621 3.004315 TGGGCGAGTCAATTTTGTTCTTC 59.996 43.478 0.00 0.00 0.00 2.87
3531 3622 3.226347 GGCGAGTCAATTTTGTTCTTCG 58.774 45.455 0.00 0.00 0.00 3.79
3532 3623 3.226347 GCGAGTCAATTTTGTTCTTCGG 58.774 45.455 0.00 0.00 0.00 4.30
3533 3624 3.226347 CGAGTCAATTTTGTTCTTCGGC 58.774 45.455 0.00 0.00 0.00 5.54
3534 3625 3.058914 CGAGTCAATTTTGTTCTTCGGCT 60.059 43.478 0.00 0.00 0.00 5.52
3535 3626 4.222114 GAGTCAATTTTGTTCTTCGGCTG 58.778 43.478 0.00 0.00 0.00 4.85
3536 3627 3.004734 AGTCAATTTTGTTCTTCGGCTGG 59.995 43.478 0.00 0.00 0.00 4.85
3537 3628 3.004315 GTCAATTTTGTTCTTCGGCTGGA 59.996 43.478 0.00 0.00 0.00 3.86
3538 3629 3.826157 TCAATTTTGTTCTTCGGCTGGAT 59.174 39.130 0.00 0.00 0.00 3.41
3539 3630 4.280677 TCAATTTTGTTCTTCGGCTGGATT 59.719 37.500 0.00 0.00 0.00 3.01
3540 3631 4.871933 ATTTTGTTCTTCGGCTGGATTT 57.128 36.364 0.00 0.00 0.00 2.17
3541 3632 4.664150 TTTTGTTCTTCGGCTGGATTTT 57.336 36.364 0.00 0.00 0.00 1.82
3542 3633 3.641437 TTGTTCTTCGGCTGGATTTTG 57.359 42.857 0.00 0.00 0.00 2.44
3543 3634 1.885887 TGTTCTTCGGCTGGATTTTGG 59.114 47.619 0.00 0.00 0.00 3.28
3544 3635 1.886542 GTTCTTCGGCTGGATTTTGGT 59.113 47.619 0.00 0.00 0.00 3.67
3545 3636 1.533625 TCTTCGGCTGGATTTTGGTG 58.466 50.000 0.00 0.00 0.00 4.17
3546 3637 0.109132 CTTCGGCTGGATTTTGGTGC 60.109 55.000 0.00 0.00 0.00 5.01
3547 3638 1.861542 TTCGGCTGGATTTTGGTGCG 61.862 55.000 0.00 0.00 0.00 5.34
3548 3639 2.625823 CGGCTGGATTTTGGTGCGT 61.626 57.895 0.00 0.00 0.00 5.24
3549 3640 1.080569 GGCTGGATTTTGGTGCGTG 60.081 57.895 0.00 0.00 0.00 5.34
3550 3641 1.734117 GCTGGATTTTGGTGCGTGC 60.734 57.895 0.00 0.00 0.00 5.34
3551 3642 1.659233 CTGGATTTTGGTGCGTGCA 59.341 52.632 0.00 0.00 0.00 4.57
3552 3643 0.244450 CTGGATTTTGGTGCGTGCAT 59.756 50.000 0.00 0.00 0.00 3.96
3553 3644 0.038435 TGGATTTTGGTGCGTGCATG 60.038 50.000 0.09 0.09 0.00 4.06
3554 3645 1.353609 GGATTTTGGTGCGTGCATGC 61.354 55.000 24.20 24.20 0.00 4.06
3555 3646 0.388907 GATTTTGGTGCGTGCATGCT 60.389 50.000 29.83 9.38 35.36 3.79
3556 3647 0.033781 ATTTTGGTGCGTGCATGCTT 59.966 45.000 29.83 5.16 35.36 3.91
3557 3648 0.179089 TTTTGGTGCGTGCATGCTTT 60.179 45.000 29.83 0.00 35.36 3.51
3558 3649 0.179089 TTTGGTGCGTGCATGCTTTT 60.179 45.000 29.83 0.00 35.36 2.27
3559 3650 0.179089 TTGGTGCGTGCATGCTTTTT 60.179 45.000 29.83 0.00 35.36 1.94
3576 3667 3.828875 TTTTTCCATGGGTTCGCTTTT 57.171 38.095 13.02 0.00 0.00 2.27
3577 3668 2.810439 TTTCCATGGGTTCGCTTTTG 57.190 45.000 13.02 0.00 0.00 2.44
3578 3669 1.698506 TTCCATGGGTTCGCTTTTGT 58.301 45.000 13.02 0.00 0.00 2.83
3579 3670 1.698506 TCCATGGGTTCGCTTTTGTT 58.301 45.000 13.02 0.00 0.00 2.83
3580 3671 2.035632 TCCATGGGTTCGCTTTTGTTT 58.964 42.857 13.02 0.00 0.00 2.83
3581 3672 2.432510 TCCATGGGTTCGCTTTTGTTTT 59.567 40.909 13.02 0.00 0.00 2.43
3582 3673 2.799978 CCATGGGTTCGCTTTTGTTTTC 59.200 45.455 2.85 0.00 0.00 2.29
3583 3674 3.492482 CCATGGGTTCGCTTTTGTTTTCT 60.492 43.478 2.85 0.00 0.00 2.52
3584 3675 3.157932 TGGGTTCGCTTTTGTTTTCTG 57.842 42.857 0.00 0.00 0.00 3.02
3585 3676 1.858458 GGGTTCGCTTTTGTTTTCTGC 59.142 47.619 0.00 0.00 0.00 4.26
3586 3677 2.535331 GGTTCGCTTTTGTTTTCTGCA 58.465 42.857 0.00 0.00 0.00 4.41
3587 3678 2.281498 GGTTCGCTTTTGTTTTCTGCAC 59.719 45.455 0.00 0.00 0.00 4.57
3588 3679 1.821336 TCGCTTTTGTTTTCTGCACG 58.179 45.000 0.00 0.00 0.00 5.34
3589 3680 1.131504 TCGCTTTTGTTTTCTGCACGT 59.868 42.857 0.00 0.00 0.00 4.49
3590 3681 1.252524 CGCTTTTGTTTTCTGCACGTG 59.747 47.619 12.28 12.28 0.00 4.49
3591 3682 2.258755 GCTTTTGTTTTCTGCACGTGT 58.741 42.857 18.38 0.00 0.00 4.49
3592 3683 3.430931 GCTTTTGTTTTCTGCACGTGTA 58.569 40.909 18.38 12.42 0.00 2.90
3593 3684 3.239712 GCTTTTGTTTTCTGCACGTGTAC 59.760 43.478 18.38 1.32 0.00 2.90
3594 3685 2.722936 TTGTTTTCTGCACGTGTACG 57.277 45.000 18.38 7.06 46.33 3.67
3595 3686 0.302288 TGTTTTCTGCACGTGTACGC 59.698 50.000 18.38 2.58 44.43 4.42
3596 3687 0.580104 GTTTTCTGCACGTGTACGCT 59.420 50.000 18.38 0.00 44.43 5.07
3597 3688 1.004292 GTTTTCTGCACGTGTACGCTT 60.004 47.619 18.38 0.00 44.43 4.68
3598 3689 1.292061 TTTCTGCACGTGTACGCTTT 58.708 45.000 18.38 0.00 44.43 3.51
3599 3690 1.292061 TTCTGCACGTGTACGCTTTT 58.708 45.000 18.38 0.00 44.43 2.27
3600 3691 2.137129 TCTGCACGTGTACGCTTTTA 57.863 45.000 18.38 0.00 44.43 1.52
3601 3692 2.679450 TCTGCACGTGTACGCTTTTAT 58.321 42.857 18.38 0.00 44.43 1.40
3602 3693 3.061322 TCTGCACGTGTACGCTTTTATT 58.939 40.909 18.38 0.00 44.43 1.40
3603 3694 3.495377 TCTGCACGTGTACGCTTTTATTT 59.505 39.130 18.38 0.00 44.43 1.40
3604 3695 4.024725 TCTGCACGTGTACGCTTTTATTTT 60.025 37.500 18.38 0.00 44.43 1.82
3605 3696 4.212911 TGCACGTGTACGCTTTTATTTTC 58.787 39.130 18.38 0.00 44.43 2.29
3606 3697 4.024725 TGCACGTGTACGCTTTTATTTTCT 60.025 37.500 18.38 0.00 44.43 2.52
3607 3698 5.177142 TGCACGTGTACGCTTTTATTTTCTA 59.823 36.000 18.38 0.00 44.43 2.10
3608 3699 6.128499 TGCACGTGTACGCTTTTATTTTCTAT 60.128 34.615 18.38 0.00 44.43 1.98
3609 3700 6.739550 GCACGTGTACGCTTTTATTTTCTATT 59.260 34.615 18.38 0.00 44.43 1.73
3610 3701 7.269724 GCACGTGTACGCTTTTATTTTCTATTT 59.730 33.333 18.38 0.00 44.43 1.40
3611 3702 9.743937 CACGTGTACGCTTTTATTTTCTATTTA 57.256 29.630 7.58 0.00 44.43 1.40
3612 3703 9.745323 ACGTGTACGCTTTTATTTTCTATTTAC 57.255 29.630 4.67 0.00 44.43 2.01
3613 3704 9.202545 CGTGTACGCTTTTATTTTCTATTTACC 57.797 33.333 4.67 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
137 138 4.564782 AGATCTGCTCCAACTTGAATGA 57.435 40.909 0.00 0.00 0.00 2.57
198 199 5.269505 AGCGCTTACTTGATGAAGATAGT 57.730 39.130 2.64 0.00 32.98 2.12
200 201 7.039313 TCTAAGCGCTTACTTGATGAAGATA 57.961 36.000 25.53 2.47 32.98 1.98
212 213 7.488471 TCTTTGAACTAGAATCTAAGCGCTTAC 59.512 37.037 25.53 15.66 32.17 2.34
221 222 8.768501 TGCTCCTATCTTTGAACTAGAATCTA 57.231 34.615 0.00 0.00 0.00 1.98
330 331 3.587061 TCAATCCCAGCCTCAAGTCTTAA 59.413 43.478 0.00 0.00 0.00 1.85
331 332 3.181329 TCAATCCCAGCCTCAAGTCTTA 58.819 45.455 0.00 0.00 0.00 2.10
391 392 9.273016 AGGAAACATTGATTACAATATACTCCG 57.727 33.333 0.00 0.00 43.76 4.63
397 398 9.941325 TGCAAAAGGAAACATTGATTACAATAT 57.059 25.926 0.00 0.00 43.76 1.28
398 399 9.770097 TTGCAAAAGGAAACATTGATTACAATA 57.230 25.926 0.00 0.00 43.76 1.90
399 400 8.674263 TTGCAAAAGGAAACATTGATTACAAT 57.326 26.923 0.00 0.00 46.10 2.71
402 403 8.309163 TGATTGCAAAAGGAAACATTGATTAC 57.691 30.769 1.71 0.00 32.89 1.89
543 547 1.153429 AAGCGCCTCACCGGTATTC 60.153 57.895 6.87 0.00 38.06 1.75
549 553 1.781025 TTTTCACAAGCGCCTCACCG 61.781 55.000 2.29 0.00 0.00 4.94
589 593 3.626670 CCTCAAAGTTTTGGCAAATGCAA 59.373 39.130 14.29 0.00 44.36 4.08
607 611 4.415881 TCTTTCTTTGTGTAGTGCCTCA 57.584 40.909 0.00 0.00 0.00 3.86
613 617 6.811665 GGCAAAGTTTTCTTTCTTTGTGTAGT 59.188 34.615 15.60 0.00 46.89 2.73
615 619 6.692486 TGGCAAAGTTTTCTTTCTTTGTGTA 58.308 32.000 15.60 4.16 46.89 2.90
616 620 5.546526 TGGCAAAGTTTTCTTTCTTTGTGT 58.453 33.333 15.60 0.00 46.89 3.72
617 621 6.479095 TTGGCAAAGTTTTCTTTCTTTGTG 57.521 33.333 15.60 0.00 46.89 3.33
618 622 6.072728 GGTTTGGCAAAGTTTTCTTTCTTTGT 60.073 34.615 13.94 0.00 46.89 2.83
619 623 6.072783 TGGTTTGGCAAAGTTTTCTTTCTTTG 60.073 34.615 13.94 11.65 46.89 2.77
620 624 6.000840 TGGTTTGGCAAAGTTTTCTTTCTTT 58.999 32.000 13.94 0.00 46.89 2.52
657 661 3.479203 CTGCCCCGGTATGCCTCA 61.479 66.667 0.00 0.00 0.00 3.86
708 712 3.108288 TTGTAGGTGGGCGTGTGCA 62.108 57.895 0.00 0.00 45.35 4.57
730 735 1.224069 CGGTGGCTTCATCTATGGCG 61.224 60.000 0.00 0.00 0.00 5.69
928 935 2.548920 GGGACTCTTGTGGTCAACTCTG 60.549 54.545 0.00 0.00 35.61 3.35
1164 1188 4.269523 TGGTGGTGCTGGACCTGC 62.270 66.667 19.43 16.03 46.32 4.85
2092 2137 1.202348 GTAGTTGTGGAAGCCATTGCC 59.798 52.381 0.00 0.00 38.69 4.52
2883 2962 6.328672 AGGTAAGATACTCCAATGCTCTCAAT 59.671 38.462 0.00 0.00 0.00 2.57
2903 2989 3.905968 TGGACATCCACGATCTAGGTAA 58.094 45.455 0.00 0.00 42.01 2.85
3128 3219 3.605664 GCGGCCACTGCAAAAGGT 61.606 61.111 2.24 0.00 40.13 3.50
3130 3221 1.523154 TAAGGCGGCCACTGCAAAAG 61.523 55.000 23.09 0.00 40.13 2.27
3131 3222 1.109920 TTAAGGCGGCCACTGCAAAA 61.110 50.000 23.09 1.38 40.13 2.44
3132 3223 1.109920 TTTAAGGCGGCCACTGCAAA 61.110 50.000 23.09 10.17 40.13 3.68
3133 3224 1.523154 CTTTAAGGCGGCCACTGCAA 61.523 55.000 23.09 5.44 40.13 4.08
3134 3225 1.971167 CTTTAAGGCGGCCACTGCA 60.971 57.895 23.09 0.00 40.13 4.41
3135 3226 2.877691 CTTTAAGGCGGCCACTGC 59.122 61.111 23.09 0.00 0.00 4.40
3149 3240 2.331451 GCGCGTTGGAGTTGCTTT 59.669 55.556 8.43 0.00 0.00 3.51
3150 3241 4.012895 CGCGCGTTGGAGTTGCTT 62.013 61.111 24.19 0.00 0.00 3.91
3164 3255 2.760159 ATTCATTTGGGTCCGCGCG 61.760 57.895 25.67 25.67 0.00 6.86
3165 3256 1.226660 CATTCATTTGGGTCCGCGC 60.227 57.895 0.00 0.00 0.00 6.86
3166 3257 0.098728 GTCATTCATTTGGGTCCGCG 59.901 55.000 0.00 0.00 0.00 6.46
3167 3258 0.098728 CGTCATTCATTTGGGTCCGC 59.901 55.000 0.00 0.00 0.00 5.54
3168 3259 1.732941 TCGTCATTCATTTGGGTCCG 58.267 50.000 0.00 0.00 0.00 4.79
3169 3260 4.718940 AAATCGTCATTCATTTGGGTCC 57.281 40.909 0.00 0.00 0.00 4.46
3170 3261 7.165812 CGAATAAAATCGTCATTCATTTGGGTC 59.834 37.037 0.00 0.00 38.01 4.46
3203 3294 0.762418 ACATGACCGACCCAAACAGA 59.238 50.000 0.00 0.00 0.00 3.41
3204 3295 1.604604 AACATGACCGACCCAAACAG 58.395 50.000 0.00 0.00 0.00 3.16
3205 3296 2.369203 TCTAACATGACCGACCCAAACA 59.631 45.455 0.00 0.00 0.00 2.83
3206 3297 3.048337 TCTAACATGACCGACCCAAAC 57.952 47.619 0.00 0.00 0.00 2.93
3207 3298 3.071892 AGTTCTAACATGACCGACCCAAA 59.928 43.478 0.00 0.00 0.00 3.28
3210 3301 2.618053 CAGTTCTAACATGACCGACCC 58.382 52.381 0.00 0.00 0.00 4.46
3211 3302 2.028385 ACCAGTTCTAACATGACCGACC 60.028 50.000 0.00 0.00 0.00 4.79
3212 3303 2.993899 CACCAGTTCTAACATGACCGAC 59.006 50.000 0.00 0.00 0.00 4.79
3213 3304 2.894765 TCACCAGTTCTAACATGACCGA 59.105 45.455 0.00 0.00 0.00 4.69
3214 3305 3.313012 TCACCAGTTCTAACATGACCG 57.687 47.619 0.00 0.00 0.00 4.79
3215 3306 4.083271 GCTTTCACCAGTTCTAACATGACC 60.083 45.833 0.00 0.00 0.00 4.02
3216 3307 4.377431 CGCTTTCACCAGTTCTAACATGAC 60.377 45.833 0.00 0.00 0.00 3.06
3217 3308 3.745975 CGCTTTCACCAGTTCTAACATGA 59.254 43.478 0.00 0.00 0.00 3.07
3218 3309 3.498397 ACGCTTTCACCAGTTCTAACATG 59.502 43.478 0.00 0.00 0.00 3.21
3219 3310 3.740115 ACGCTTTCACCAGTTCTAACAT 58.260 40.909 0.00 0.00 0.00 2.71
3220 3311 3.188159 ACGCTTTCACCAGTTCTAACA 57.812 42.857 0.00 0.00 0.00 2.41
3221 3312 4.272748 AGAAACGCTTTCACCAGTTCTAAC 59.727 41.667 11.33 0.00 42.10 2.34
3222 3313 4.448210 AGAAACGCTTTCACCAGTTCTAA 58.552 39.130 11.33 0.00 42.10 2.10
3223 3314 4.067972 AGAAACGCTTTCACCAGTTCTA 57.932 40.909 11.33 0.00 42.10 2.10
3224 3315 2.919228 AGAAACGCTTTCACCAGTTCT 58.081 42.857 11.33 0.00 42.10 3.01
3225 3316 3.808174 AGTAGAAACGCTTTCACCAGTTC 59.192 43.478 11.33 0.00 42.10 3.01
3226 3317 3.805207 AGTAGAAACGCTTTCACCAGTT 58.195 40.909 11.33 0.00 42.10 3.16
3227 3318 3.470645 AGTAGAAACGCTTTCACCAGT 57.529 42.857 11.33 0.28 42.10 4.00
3228 3319 4.773510 GAAAGTAGAAACGCTTTCACCAG 58.226 43.478 10.88 0.00 45.74 4.00
3229 3320 4.806342 GAAAGTAGAAACGCTTTCACCA 57.194 40.909 10.88 0.00 45.74 4.17
3233 3324 3.985925 TCGAGGAAAGTAGAAACGCTTTC 59.014 43.478 8.11 8.11 45.73 2.62
3234 3325 3.986277 TCGAGGAAAGTAGAAACGCTTT 58.014 40.909 0.00 0.00 37.60 3.51
3235 3326 3.576648 CTCGAGGAAAGTAGAAACGCTT 58.423 45.455 3.91 0.00 0.00 4.68
3236 3327 2.094649 CCTCGAGGAAAGTAGAAACGCT 60.095 50.000 28.21 0.00 37.39 5.07
3237 3328 2.260481 CCTCGAGGAAAGTAGAAACGC 58.740 52.381 28.21 0.00 37.39 4.84
3238 3329 2.490903 TCCCTCGAGGAAAGTAGAAACG 59.509 50.000 33.39 11.20 43.78 3.60
3239 3330 3.762823 TCTCCCTCGAGGAAAGTAGAAAC 59.237 47.826 33.39 0.00 46.94 2.78
3240 3331 4.017808 CTCTCCCTCGAGGAAAGTAGAAA 58.982 47.826 33.39 11.56 46.94 2.52
3241 3332 3.622630 CTCTCCCTCGAGGAAAGTAGAA 58.377 50.000 33.39 11.90 46.94 2.10
3242 3333 2.684334 GCTCTCCCTCGAGGAAAGTAGA 60.684 54.545 33.39 22.08 46.94 2.59
3243 3334 1.679153 GCTCTCCCTCGAGGAAAGTAG 59.321 57.143 33.39 23.42 46.94 2.57
3244 3335 1.685491 GGCTCTCCCTCGAGGAAAGTA 60.685 57.143 33.39 16.28 46.94 2.24
3245 3336 0.973496 GGCTCTCCCTCGAGGAAAGT 60.973 60.000 33.39 0.00 46.94 2.66
3246 3337 0.972983 TGGCTCTCCCTCGAGGAAAG 60.973 60.000 33.39 26.43 46.94 2.62
3247 3338 1.078528 TGGCTCTCCCTCGAGGAAA 59.921 57.895 33.39 18.70 46.94 3.13
3248 3339 1.682684 GTGGCTCTCCCTCGAGGAA 60.683 63.158 33.39 12.89 46.94 3.36
3249 3340 2.043852 GTGGCTCTCCCTCGAGGA 60.044 66.667 33.39 17.24 44.91 3.71
3250 3341 2.363018 TGTGGCTCTCCCTCGAGG 60.363 66.667 25.36 25.36 36.70 4.63
3251 3342 1.379176 TCTGTGGCTCTCCCTCGAG 60.379 63.158 5.13 5.13 37.48 4.04
3252 3343 1.679305 GTCTGTGGCTCTCCCTCGA 60.679 63.158 0.00 0.00 0.00 4.04
3253 3344 2.888863 GTCTGTGGCTCTCCCTCG 59.111 66.667 0.00 0.00 0.00 4.63
3254 3345 1.939769 GACGTCTGTGGCTCTCCCTC 61.940 65.000 8.70 0.00 0.00 4.30
3255 3346 1.979693 GACGTCTGTGGCTCTCCCT 60.980 63.158 8.70 0.00 0.00 4.20
3256 3347 0.680280 TAGACGTCTGTGGCTCTCCC 60.680 60.000 28.12 0.00 0.00 4.30
3257 3348 1.394618 ATAGACGTCTGTGGCTCTCC 58.605 55.000 28.12 0.00 0.00 3.71
3258 3349 3.512033 AAATAGACGTCTGTGGCTCTC 57.488 47.619 28.12 0.00 0.00 3.20
3259 3350 5.127194 TCAATAAATAGACGTCTGTGGCTCT 59.873 40.000 28.12 2.77 0.00 4.09
3260 3351 5.348986 TCAATAAATAGACGTCTGTGGCTC 58.651 41.667 28.12 0.00 0.00 4.70
3261 3352 5.339008 TCAATAAATAGACGTCTGTGGCT 57.661 39.130 28.12 11.94 0.00 4.75
3262 3353 4.508124 CCTCAATAAATAGACGTCTGTGGC 59.492 45.833 28.12 0.00 0.00 5.01
3263 3354 4.508124 GCCTCAATAAATAGACGTCTGTGG 59.492 45.833 28.12 19.11 0.00 4.17
3264 3355 5.109210 TGCCTCAATAAATAGACGTCTGTG 58.891 41.667 28.12 14.70 0.00 3.66
3265 3356 5.127194 TCTGCCTCAATAAATAGACGTCTGT 59.873 40.000 28.12 19.24 0.00 3.41
3266 3357 5.592054 TCTGCCTCAATAAATAGACGTCTG 58.408 41.667 28.12 10.29 0.00 3.51
3267 3358 5.854010 TCTGCCTCAATAAATAGACGTCT 57.146 39.130 23.66 23.66 0.00 4.18
3268 3359 5.234543 GGTTCTGCCTCAATAAATAGACGTC 59.765 44.000 7.70 7.70 0.00 4.34
3269 3360 5.104900 AGGTTCTGCCTCAATAAATAGACGT 60.105 40.000 0.00 0.00 46.96 4.34
3270 3361 5.360591 AGGTTCTGCCTCAATAAATAGACG 58.639 41.667 0.00 0.00 46.96 4.18
3284 3375 0.595095 CTTCACAGCAAGGTTCTGCC 59.405 55.000 0.00 0.00 43.73 4.85
3285 3376 1.312815 ACTTCACAGCAAGGTTCTGC 58.687 50.000 0.00 0.00 42.97 4.26
3286 3377 3.466836 TGTACTTCACAGCAAGGTTCTG 58.533 45.455 0.00 0.00 37.56 3.02
3287 3378 3.838244 TGTACTTCACAGCAAGGTTCT 57.162 42.857 0.00 0.00 31.89 3.01
3288 3379 4.127171 TCTTGTACTTCACAGCAAGGTTC 58.873 43.478 0.00 0.00 38.72 3.62
3289 3380 4.130118 CTCTTGTACTTCACAGCAAGGTT 58.870 43.478 0.00 0.00 38.72 3.50
3290 3381 3.388024 TCTCTTGTACTTCACAGCAAGGT 59.612 43.478 0.00 0.00 38.72 3.50
3291 3382 3.995199 TCTCTTGTACTTCACAGCAAGG 58.005 45.455 0.00 0.00 38.72 3.61
3292 3383 4.391216 CCATCTCTTGTACTTCACAGCAAG 59.609 45.833 0.00 0.00 38.72 4.01
3293 3384 4.040339 TCCATCTCTTGTACTTCACAGCAA 59.960 41.667 0.00 0.00 38.72 3.91
3294 3385 3.578282 TCCATCTCTTGTACTTCACAGCA 59.422 43.478 0.00 0.00 38.72 4.41
3295 3386 4.193826 TCCATCTCTTGTACTTCACAGC 57.806 45.455 0.00 0.00 38.72 4.40
3296 3387 6.983307 CCTAATCCATCTCTTGTACTTCACAG 59.017 42.308 0.00 0.00 38.72 3.66
3297 3388 6.667848 TCCTAATCCATCTCTTGTACTTCACA 59.332 38.462 0.00 0.00 34.51 3.58
3298 3389 7.113658 TCCTAATCCATCTCTTGTACTTCAC 57.886 40.000 0.00 0.00 0.00 3.18
3299 3390 7.733773 TTCCTAATCCATCTCTTGTACTTCA 57.266 36.000 0.00 0.00 0.00 3.02
3300 3391 8.825667 GATTCCTAATCCATCTCTTGTACTTC 57.174 38.462 0.00 0.00 31.60 3.01
3315 3406 5.936956 CCTTGTGATAGCTGGATTCCTAATC 59.063 44.000 3.95 2.88 37.17 1.75
3316 3407 5.608437 TCCTTGTGATAGCTGGATTCCTAAT 59.392 40.000 3.95 0.00 0.00 1.73
3317 3408 4.968719 TCCTTGTGATAGCTGGATTCCTAA 59.031 41.667 3.95 0.00 0.00 2.69
3318 3409 4.556697 TCCTTGTGATAGCTGGATTCCTA 58.443 43.478 3.95 0.00 0.00 2.94
3319 3410 3.387962 TCCTTGTGATAGCTGGATTCCT 58.612 45.455 3.95 0.00 0.00 3.36
3320 3411 3.389329 TCTCCTTGTGATAGCTGGATTCC 59.611 47.826 0.00 0.00 0.00 3.01
3321 3412 4.679373 TCTCCTTGTGATAGCTGGATTC 57.321 45.455 0.00 0.00 0.00 2.52
3322 3413 6.080682 TCTATCTCCTTGTGATAGCTGGATT 58.919 40.000 0.00 0.00 41.67 3.01
3323 3414 5.649265 TCTATCTCCTTGTGATAGCTGGAT 58.351 41.667 0.00 0.00 41.67 3.41
3324 3415 5.066913 TCTATCTCCTTGTGATAGCTGGA 57.933 43.478 0.00 0.00 41.67 3.86
3325 3416 5.782047 CTTCTATCTCCTTGTGATAGCTGG 58.218 45.833 0.00 0.00 41.67 4.85
3326 3417 5.229423 GCTTCTATCTCCTTGTGATAGCTG 58.771 45.833 0.00 5.32 41.67 4.24
3327 3418 4.283212 GGCTTCTATCTCCTTGTGATAGCT 59.717 45.833 0.00 0.00 41.67 3.32
3328 3419 4.039730 TGGCTTCTATCTCCTTGTGATAGC 59.960 45.833 7.84 0.00 41.67 2.97
3329 3420 5.304101 AGTGGCTTCTATCTCCTTGTGATAG 59.696 44.000 0.00 0.00 42.67 2.08
3330 3421 5.211973 AGTGGCTTCTATCTCCTTGTGATA 58.788 41.667 0.00 0.00 0.00 2.15
3331 3422 4.036518 AGTGGCTTCTATCTCCTTGTGAT 58.963 43.478 0.00 0.00 0.00 3.06
3332 3423 3.445008 AGTGGCTTCTATCTCCTTGTGA 58.555 45.455 0.00 0.00 0.00 3.58
3333 3424 3.902881 AGTGGCTTCTATCTCCTTGTG 57.097 47.619 0.00 0.00 0.00 3.33
3334 3425 4.917906 AAAGTGGCTTCTATCTCCTTGT 57.082 40.909 0.00 0.00 0.00 3.16
3335 3426 4.813697 GCTAAAGTGGCTTCTATCTCCTTG 59.186 45.833 0.00 0.00 0.00 3.61
3336 3427 4.719273 AGCTAAAGTGGCTTCTATCTCCTT 59.281 41.667 0.00 0.00 36.56 3.36
3337 3428 4.294347 AGCTAAAGTGGCTTCTATCTCCT 58.706 43.478 0.00 0.00 36.56 3.69
3338 3429 4.681074 AGCTAAAGTGGCTTCTATCTCC 57.319 45.455 0.00 0.00 36.56 3.71
3339 3430 6.642707 TCTAGCTAAAGTGGCTTCTATCTC 57.357 41.667 0.00 0.00 40.74 2.75
3340 3431 7.610580 AATCTAGCTAAAGTGGCTTCTATCT 57.389 36.000 0.00 0.00 40.74 1.98
3341 3432 8.669946 AAAATCTAGCTAAAGTGGCTTCTATC 57.330 34.615 0.00 0.00 40.74 2.08
3342 3433 9.771534 CTAAAATCTAGCTAAAGTGGCTTCTAT 57.228 33.333 0.00 0.00 40.74 1.98
3343 3434 8.759782 ACTAAAATCTAGCTAAAGTGGCTTCTA 58.240 33.333 0.00 0.00 40.74 2.10
3344 3435 7.625469 ACTAAAATCTAGCTAAAGTGGCTTCT 58.375 34.615 0.00 0.00 40.74 2.85
3345 3436 7.549488 TGACTAAAATCTAGCTAAAGTGGCTTC 59.451 37.037 0.00 0.00 40.74 3.86
3346 3437 7.394816 TGACTAAAATCTAGCTAAAGTGGCTT 58.605 34.615 0.00 0.00 40.74 4.35
3347 3438 6.947464 TGACTAAAATCTAGCTAAAGTGGCT 58.053 36.000 0.00 0.00 43.02 4.75
3348 3439 6.819146 ACTGACTAAAATCTAGCTAAAGTGGC 59.181 38.462 0.00 0.00 0.00 5.01
3349 3440 8.660373 CAACTGACTAAAATCTAGCTAAAGTGG 58.340 37.037 0.00 0.00 0.00 4.00
3350 3441 9.424319 TCAACTGACTAAAATCTAGCTAAAGTG 57.576 33.333 0.00 0.00 0.00 3.16
3351 3442 9.425577 GTCAACTGACTAAAATCTAGCTAAAGT 57.574 33.333 2.51 0.00 41.65 2.66
3372 3463 9.590088 CGACTAACCAAATAACTAAAAGTCAAC 57.410 33.333 0.00 0.00 32.34 3.18
3373 3464 9.545105 TCGACTAACCAAATAACTAAAAGTCAA 57.455 29.630 0.00 0.00 32.34 3.18
3374 3465 9.715121 ATCGACTAACCAAATAACTAAAAGTCA 57.285 29.630 0.00 0.00 32.34 3.41
3401 3492 8.553459 TTAAAACACAATTCAAGAGCCAAAAA 57.447 26.923 0.00 0.00 0.00 1.94
3402 3493 8.037758 TCTTAAAACACAATTCAAGAGCCAAAA 58.962 29.630 0.00 0.00 0.00 2.44
3403 3494 7.551585 TCTTAAAACACAATTCAAGAGCCAAA 58.448 30.769 0.00 0.00 0.00 3.28
3404 3495 7.106439 TCTTAAAACACAATTCAAGAGCCAA 57.894 32.000 0.00 0.00 0.00 4.52
3405 3496 6.707440 TCTTAAAACACAATTCAAGAGCCA 57.293 33.333 0.00 0.00 0.00 4.75
3406 3497 8.490355 CAAATCTTAAAACACAATTCAAGAGCC 58.510 33.333 0.00 0.00 0.00 4.70
3407 3498 9.034544 ACAAATCTTAAAACACAATTCAAGAGC 57.965 29.630 0.00 0.00 0.00 4.09
3409 3500 9.868277 ACACAAATCTTAAAACACAATTCAAGA 57.132 25.926 0.00 0.00 0.00 3.02
3410 3501 9.904647 CACACAAATCTTAAAACACAATTCAAG 57.095 29.630 0.00 0.00 0.00 3.02
3411 3502 8.877779 CCACACAAATCTTAAAACACAATTCAA 58.122 29.630 0.00 0.00 0.00 2.69
3412 3503 8.037758 ACCACACAAATCTTAAAACACAATTCA 58.962 29.630 0.00 0.00 0.00 2.57
3413 3504 8.419076 ACCACACAAATCTTAAAACACAATTC 57.581 30.769 0.00 0.00 0.00 2.17
3414 3505 8.785329 AACCACACAAATCTTAAAACACAATT 57.215 26.923 0.00 0.00 0.00 2.32
3415 3506 8.257306 AGAACCACACAAATCTTAAAACACAAT 58.743 29.630 0.00 0.00 0.00 2.71
3416 3507 7.607250 AGAACCACACAAATCTTAAAACACAA 58.393 30.769 0.00 0.00 0.00 3.33
3417 3508 7.164230 AGAACCACACAAATCTTAAAACACA 57.836 32.000 0.00 0.00 0.00 3.72
3418 3509 7.973944 AGAAGAACCACACAAATCTTAAAACAC 59.026 33.333 0.00 0.00 32.54 3.32
3419 3510 8.062065 AGAAGAACCACACAAATCTTAAAACA 57.938 30.769 0.00 0.00 32.54 2.83
3420 3511 8.926715 AAGAAGAACCACACAAATCTTAAAAC 57.073 30.769 0.00 0.00 32.54 2.43
3421 3512 9.936759 AAAAGAAGAACCACACAAATCTTAAAA 57.063 25.926 0.00 0.00 32.54 1.52
3422 3513 9.936759 AAAAAGAAGAACCACACAAATCTTAAA 57.063 25.926 0.00 0.00 32.54 1.52
3445 3536 3.057174 ACCAGCAAAACGTGACAGAAAAA 60.057 39.130 0.00 0.00 0.00 1.94
3446 3537 2.490115 ACCAGCAAAACGTGACAGAAAA 59.510 40.909 0.00 0.00 0.00 2.29
3447 3538 2.088423 ACCAGCAAAACGTGACAGAAA 58.912 42.857 0.00 0.00 0.00 2.52
3448 3539 1.400142 CACCAGCAAAACGTGACAGAA 59.600 47.619 0.00 0.00 0.00 3.02
3449 3540 1.013596 CACCAGCAAAACGTGACAGA 58.986 50.000 0.00 0.00 0.00 3.41
3450 3541 0.732571 ACACCAGCAAAACGTGACAG 59.267 50.000 0.00 0.00 0.00 3.51
3451 3542 1.666700 GTACACCAGCAAAACGTGACA 59.333 47.619 0.00 0.00 0.00 3.58
3452 3543 1.937899 AGTACACCAGCAAAACGTGAC 59.062 47.619 0.00 0.00 0.00 3.67
3453 3544 1.937223 CAGTACACCAGCAAAACGTGA 59.063 47.619 0.00 0.00 0.00 4.35
3454 3545 1.002900 CCAGTACACCAGCAAAACGTG 60.003 52.381 0.00 0.00 0.00 4.49
3455 3546 1.305201 CCAGTACACCAGCAAAACGT 58.695 50.000 0.00 0.00 0.00 3.99
3456 3547 0.591170 CCCAGTACACCAGCAAAACG 59.409 55.000 0.00 0.00 0.00 3.60
3457 3548 0.313987 GCCCAGTACACCAGCAAAAC 59.686 55.000 0.00 0.00 0.00 2.43
3458 3549 0.184933 AGCCCAGTACACCAGCAAAA 59.815 50.000 0.00 0.00 0.00 2.44
3459 3550 0.537143 CAGCCCAGTACACCAGCAAA 60.537 55.000 0.00 0.00 0.00 3.68
3460 3551 1.073025 CAGCCCAGTACACCAGCAA 59.927 57.895 0.00 0.00 0.00 3.91
3461 3552 2.749682 CAGCCCAGTACACCAGCA 59.250 61.111 0.00 0.00 0.00 4.41
3462 3553 2.045926 CCAGCCCAGTACACCAGC 60.046 66.667 0.00 0.00 0.00 4.85
3463 3554 2.671070 CCCAGCCCAGTACACCAG 59.329 66.667 0.00 0.00 0.00 4.00
3464 3555 3.646715 GCCCAGCCCAGTACACCA 61.647 66.667 0.00 0.00 0.00 4.17
3465 3556 3.330720 AGCCCAGCCCAGTACACC 61.331 66.667 0.00 0.00 0.00 4.16
3466 3557 2.045926 CAGCCCAGCCCAGTACAC 60.046 66.667 0.00 0.00 0.00 2.90
3467 3558 1.715019 AAACAGCCCAGCCCAGTACA 61.715 55.000 0.00 0.00 0.00 2.90
3468 3559 1.074951 AAACAGCCCAGCCCAGTAC 59.925 57.895 0.00 0.00 0.00 2.73
3469 3560 1.074775 CAAACAGCCCAGCCCAGTA 59.925 57.895 0.00 0.00 0.00 2.74
3470 3561 2.203538 CAAACAGCCCAGCCCAGT 60.204 61.111 0.00 0.00 0.00 4.00
3471 3562 0.901580 ATTCAAACAGCCCAGCCCAG 60.902 55.000 0.00 0.00 0.00 4.45
3472 3563 0.471591 AATTCAAACAGCCCAGCCCA 60.472 50.000 0.00 0.00 0.00 5.36
3473 3564 0.686789 AAATTCAAACAGCCCAGCCC 59.313 50.000 0.00 0.00 0.00 5.19
3474 3565 1.344114 TCAAATTCAAACAGCCCAGCC 59.656 47.619 0.00 0.00 0.00 4.85
3475 3566 2.036346 AGTCAAATTCAAACAGCCCAGC 59.964 45.455 0.00 0.00 0.00 4.85
3476 3567 3.318839 TCAGTCAAATTCAAACAGCCCAG 59.681 43.478 0.00 0.00 0.00 4.45
3477 3568 3.068024 GTCAGTCAAATTCAAACAGCCCA 59.932 43.478 0.00 0.00 0.00 5.36
3478 3569 3.319122 AGTCAGTCAAATTCAAACAGCCC 59.681 43.478 0.00 0.00 0.00 5.19
3479 3570 4.540824 GAGTCAGTCAAATTCAAACAGCC 58.459 43.478 0.00 0.00 0.00 4.85
3480 3571 4.276926 AGGAGTCAGTCAAATTCAAACAGC 59.723 41.667 0.00 0.00 0.00 4.40
3481 3572 7.678947 ATAGGAGTCAGTCAAATTCAAACAG 57.321 36.000 0.00 0.00 0.00 3.16
3482 3573 8.463930 AAATAGGAGTCAGTCAAATTCAAACA 57.536 30.769 0.00 0.00 0.00 2.83
3483 3574 9.185192 CAAAATAGGAGTCAGTCAAATTCAAAC 57.815 33.333 0.00 0.00 0.00 2.93
3484 3575 8.359642 CCAAAATAGGAGTCAGTCAAATTCAAA 58.640 33.333 0.00 0.00 0.00 2.69
3485 3576 7.039784 CCCAAAATAGGAGTCAGTCAAATTCAA 60.040 37.037 0.00 0.00 0.00 2.69
3486 3577 6.434028 CCCAAAATAGGAGTCAGTCAAATTCA 59.566 38.462 0.00 0.00 0.00 2.57
3487 3578 6.625960 GCCCAAAATAGGAGTCAGTCAAATTC 60.626 42.308 0.00 0.00 0.00 2.17
3488 3579 5.185828 GCCCAAAATAGGAGTCAGTCAAATT 59.814 40.000 0.00 0.00 0.00 1.82
3489 3580 4.706962 GCCCAAAATAGGAGTCAGTCAAAT 59.293 41.667 0.00 0.00 0.00 2.32
3490 3581 4.079253 GCCCAAAATAGGAGTCAGTCAAA 58.921 43.478 0.00 0.00 0.00 2.69
3491 3582 3.686016 GCCCAAAATAGGAGTCAGTCAA 58.314 45.455 0.00 0.00 0.00 3.18
3492 3583 2.354704 CGCCCAAAATAGGAGTCAGTCA 60.355 50.000 0.00 0.00 0.00 3.41
3493 3584 2.093658 TCGCCCAAAATAGGAGTCAGTC 60.094 50.000 0.00 0.00 0.00 3.51
3494 3585 1.906574 TCGCCCAAAATAGGAGTCAGT 59.093 47.619 0.00 0.00 0.00 3.41
3495 3586 2.093447 ACTCGCCCAAAATAGGAGTCAG 60.093 50.000 0.00 0.00 32.86 3.51
3496 3587 1.906574 ACTCGCCCAAAATAGGAGTCA 59.093 47.619 0.00 0.00 32.86 3.41
3497 3588 2.552031 GACTCGCCCAAAATAGGAGTC 58.448 52.381 4.02 4.02 44.51 3.36
3498 3589 1.906574 TGACTCGCCCAAAATAGGAGT 59.093 47.619 0.00 0.00 40.43 3.85
3499 3590 2.691409 TGACTCGCCCAAAATAGGAG 57.309 50.000 0.00 0.00 0.00 3.69
3500 3591 3.644966 ATTGACTCGCCCAAAATAGGA 57.355 42.857 0.00 0.00 0.00 2.94
3501 3592 4.718940 AAATTGACTCGCCCAAAATAGG 57.281 40.909 0.00 0.00 0.00 2.57
3502 3593 5.469479 ACAAAATTGACTCGCCCAAAATAG 58.531 37.500 0.00 0.00 0.00 1.73
3503 3594 5.461032 ACAAAATTGACTCGCCCAAAATA 57.539 34.783 0.00 0.00 0.00 1.40
3504 3595 4.335400 ACAAAATTGACTCGCCCAAAAT 57.665 36.364 0.00 0.00 0.00 1.82
3505 3596 3.810310 ACAAAATTGACTCGCCCAAAA 57.190 38.095 0.00 0.00 0.00 2.44
3506 3597 3.383185 AGAACAAAATTGACTCGCCCAAA 59.617 39.130 0.00 0.00 0.00 3.28
3507 3598 2.955660 AGAACAAAATTGACTCGCCCAA 59.044 40.909 0.00 0.00 0.00 4.12
3508 3599 2.582052 AGAACAAAATTGACTCGCCCA 58.418 42.857 0.00 0.00 0.00 5.36
3509 3600 3.565516 GAAGAACAAAATTGACTCGCCC 58.434 45.455 0.00 0.00 0.00 6.13
3510 3601 3.226347 CGAAGAACAAAATTGACTCGCC 58.774 45.455 0.00 0.00 0.00 5.54
3511 3602 3.226347 CCGAAGAACAAAATTGACTCGC 58.774 45.455 0.00 0.00 0.00 5.03
3512 3603 3.058914 AGCCGAAGAACAAAATTGACTCG 60.059 43.478 0.00 2.90 0.00 4.18
3513 3604 4.222114 CAGCCGAAGAACAAAATTGACTC 58.778 43.478 0.00 0.00 0.00 3.36
3514 3605 3.004734 CCAGCCGAAGAACAAAATTGACT 59.995 43.478 0.00 0.00 0.00 3.41
3515 3606 3.004315 TCCAGCCGAAGAACAAAATTGAC 59.996 43.478 0.00 0.00 0.00 3.18
3516 3607 3.218453 TCCAGCCGAAGAACAAAATTGA 58.782 40.909 0.00 0.00 0.00 2.57
3517 3608 3.641437 TCCAGCCGAAGAACAAAATTG 57.359 42.857 0.00 0.00 0.00 2.32
3518 3609 4.871933 AATCCAGCCGAAGAACAAAATT 57.128 36.364 0.00 0.00 0.00 1.82
3519 3610 4.871933 AAATCCAGCCGAAGAACAAAAT 57.128 36.364 0.00 0.00 0.00 1.82
3520 3611 4.367450 CAAAATCCAGCCGAAGAACAAAA 58.633 39.130 0.00 0.00 0.00 2.44
3521 3612 3.243704 CCAAAATCCAGCCGAAGAACAAA 60.244 43.478 0.00 0.00 0.00 2.83
3522 3613 2.295909 CCAAAATCCAGCCGAAGAACAA 59.704 45.455 0.00 0.00 0.00 2.83
3523 3614 1.885887 CCAAAATCCAGCCGAAGAACA 59.114 47.619 0.00 0.00 0.00 3.18
3524 3615 1.886542 ACCAAAATCCAGCCGAAGAAC 59.113 47.619 0.00 0.00 0.00 3.01
3525 3616 1.885887 CACCAAAATCCAGCCGAAGAA 59.114 47.619 0.00 0.00 0.00 2.52
3526 3617 1.533625 CACCAAAATCCAGCCGAAGA 58.466 50.000 0.00 0.00 0.00 2.87
3527 3618 0.109132 GCACCAAAATCCAGCCGAAG 60.109 55.000 0.00 0.00 0.00 3.79
3528 3619 1.861542 CGCACCAAAATCCAGCCGAA 61.862 55.000 0.00 0.00 0.00 4.30
3529 3620 2.331893 CGCACCAAAATCCAGCCGA 61.332 57.895 0.00 0.00 0.00 5.54
3530 3621 2.179018 CGCACCAAAATCCAGCCG 59.821 61.111 0.00 0.00 0.00 5.52
3531 3622 1.080569 CACGCACCAAAATCCAGCC 60.081 57.895 0.00 0.00 0.00 4.85
3532 3623 1.734117 GCACGCACCAAAATCCAGC 60.734 57.895 0.00 0.00 0.00 4.85
3533 3624 0.244450 ATGCACGCACCAAAATCCAG 59.756 50.000 0.00 0.00 0.00 3.86
3534 3625 0.038435 CATGCACGCACCAAAATCCA 60.038 50.000 0.00 0.00 0.00 3.41
3535 3626 1.353609 GCATGCACGCACCAAAATCC 61.354 55.000 14.21 0.00 0.00 3.01
3536 3627 0.388907 AGCATGCACGCACCAAAATC 60.389 50.000 21.98 0.00 0.00 2.17
3537 3628 0.033781 AAGCATGCACGCACCAAAAT 59.966 45.000 21.98 0.00 0.00 1.82
3538 3629 0.179089 AAAGCATGCACGCACCAAAA 60.179 45.000 21.98 0.00 0.00 2.44
3539 3630 0.179089 AAAAGCATGCACGCACCAAA 60.179 45.000 21.98 0.00 0.00 3.28
3540 3631 0.179089 AAAAAGCATGCACGCACCAA 60.179 45.000 21.98 0.00 0.00 3.67
3541 3632 1.440893 AAAAAGCATGCACGCACCA 59.559 47.368 21.98 0.00 0.00 4.17
3542 3633 4.341827 AAAAAGCATGCACGCACC 57.658 50.000 21.98 0.00 0.00 5.01
3556 3647 3.118592 ACAAAAGCGAACCCATGGAAAAA 60.119 39.130 15.22 0.00 0.00 1.94
3557 3648 2.432510 ACAAAAGCGAACCCATGGAAAA 59.567 40.909 15.22 0.00 0.00 2.29
3558 3649 2.035632 ACAAAAGCGAACCCATGGAAA 58.964 42.857 15.22 0.00 0.00 3.13
3559 3650 1.698506 ACAAAAGCGAACCCATGGAA 58.301 45.000 15.22 0.00 0.00 3.53
3560 3651 1.698506 AACAAAAGCGAACCCATGGA 58.301 45.000 15.22 0.00 0.00 3.41
3561 3652 2.524569 AAACAAAAGCGAACCCATGG 57.475 45.000 4.14 4.14 0.00 3.66
3562 3653 3.490526 CAGAAAACAAAAGCGAACCCATG 59.509 43.478 0.00 0.00 0.00 3.66
3563 3654 3.716601 CAGAAAACAAAAGCGAACCCAT 58.283 40.909 0.00 0.00 0.00 4.00
3564 3655 2.737039 GCAGAAAACAAAAGCGAACCCA 60.737 45.455 0.00 0.00 0.00 4.51
3565 3656 1.858458 GCAGAAAACAAAAGCGAACCC 59.142 47.619 0.00 0.00 0.00 4.11
3566 3657 2.281498 GTGCAGAAAACAAAAGCGAACC 59.719 45.455 0.00 0.00 0.00 3.62
3567 3658 2.035756 CGTGCAGAAAACAAAAGCGAAC 60.036 45.455 0.00 0.00 0.00 3.95
3568 3659 2.181205 CGTGCAGAAAACAAAAGCGAA 58.819 42.857 0.00 0.00 0.00 4.70
3569 3660 1.131504 ACGTGCAGAAAACAAAAGCGA 59.868 42.857 0.00 0.00 0.00 4.93
3570 3661 1.252524 CACGTGCAGAAAACAAAAGCG 59.747 47.619 0.82 0.00 0.00 4.68
3571 3662 2.258755 ACACGTGCAGAAAACAAAAGC 58.741 42.857 17.22 0.00 0.00 3.51
3572 3663 3.477090 CGTACACGTGCAGAAAACAAAAG 59.523 43.478 17.22 0.00 34.11 2.27
3573 3664 3.418094 CGTACACGTGCAGAAAACAAAA 58.582 40.909 17.22 0.00 34.11 2.44
3574 3665 2.788407 GCGTACACGTGCAGAAAACAAA 60.788 45.455 17.22 0.00 42.22 2.83
3575 3666 1.267632 GCGTACACGTGCAGAAAACAA 60.268 47.619 17.22 0.00 42.22 2.83
3576 3667 0.302288 GCGTACACGTGCAGAAAACA 59.698 50.000 17.22 0.00 42.22 2.83
3577 3668 0.580104 AGCGTACACGTGCAGAAAAC 59.420 50.000 17.22 3.72 42.22 2.43
3578 3669 1.292061 AAGCGTACACGTGCAGAAAA 58.708 45.000 17.22 0.00 42.22 2.29
3579 3670 1.292061 AAAGCGTACACGTGCAGAAA 58.708 45.000 17.22 0.00 42.22 2.52
3580 3671 1.292061 AAAAGCGTACACGTGCAGAA 58.708 45.000 17.22 0.00 42.22 3.02
3581 3672 2.137129 TAAAAGCGTACACGTGCAGA 57.863 45.000 17.22 0.00 42.22 4.26
3582 3673 3.449322 AATAAAAGCGTACACGTGCAG 57.551 42.857 17.22 8.34 42.22 4.41
3583 3674 3.881780 AAATAAAAGCGTACACGTGCA 57.118 38.095 17.22 0.00 42.22 4.57
3584 3675 4.460505 AGAAAATAAAAGCGTACACGTGC 58.539 39.130 17.22 0.41 42.22 5.34
3585 3676 8.649810 AAATAGAAAATAAAAGCGTACACGTG 57.350 30.769 15.48 15.48 42.22 4.49
3586 3677 9.745323 GTAAATAGAAAATAAAAGCGTACACGT 57.255 29.630 3.44 0.00 42.22 4.49
3587 3678 9.202545 GGTAAATAGAAAATAAAAGCGTACACG 57.797 33.333 0.00 0.00 43.27 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.