Multiple sequence alignment - TraesCS3D01G118200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G118200 chr3D 100.000 7596 0 0 1 7596 71965370 71972965 0.000000e+00 14028.0
1 TraesCS3D01G118200 chr3D 92.000 50 2 2 2357 2404 71967489 71967538 1.370000e-07 69.4
2 TraesCS3D01G118200 chr3D 92.000 50 2 2 2120 2169 71967726 71967773 1.370000e-07 69.4
3 TraesCS3D01G118200 chr3D 96.970 33 1 0 7564 7596 96128781 96128749 1.000000e-03 56.5
4 TraesCS3D01G118200 chr3B 97.344 3502 70 11 3601 7092 117928195 117931683 0.000000e+00 5930.0
5 TraesCS3D01G118200 chr3B 95.896 2534 61 30 1 2528 117924490 117926986 0.000000e+00 4063.0
6 TraesCS3D01G118200 chr3B 99.099 666 6 0 2937 3602 117927484 117928149 0.000000e+00 1197.0
7 TraesCS3D01G118200 chr3B 98.349 424 7 0 2526 2949 117927028 117927451 0.000000e+00 745.0
8 TraesCS3D01G118200 chr3B 87.850 214 18 3 7074 7284 117931748 117931956 2.120000e-60 244.0
9 TraesCS3D01G118200 chr3B 94.000 50 1 2 2120 2169 117926815 117926862 2.940000e-09 75.0
10 TraesCS3D01G118200 chr3A 97.241 3443 71 9 3601 7036 84189552 84192977 0.000000e+00 5810.0
11 TraesCS3D01G118200 chr3A 95.618 2282 59 29 1 2278 84185686 84187930 0.000000e+00 3622.0
12 TraesCS3D01G118200 chr3A 98.609 1078 11 3 2526 3602 84188432 84189506 0.000000e+00 1905.0
13 TraesCS3D01G118200 chr3A 96.035 227 6 2 2305 2528 84188163 84188389 4.330000e-97 366.0
14 TraesCS3D01G118200 chr3A 94.048 84 5 0 7198 7281 84192993 84193076 2.220000e-25 128.0
15 TraesCS3D01G118200 chr3A 93.506 77 3 2 2245 2321 84187866 84187940 6.230000e-21 113.0
16 TraesCS3D01G118200 chr5B 98.734 158 2 0 7383 7540 622890884 622890727 1.610000e-71 281.0
17 TraesCS3D01G118200 chr5B 93.038 158 10 1 7383 7539 643653779 643653936 5.930000e-56 230.0
18 TraesCS3D01G118200 chr5B 92.727 55 4 0 7542 7596 641109739 641109685 6.320000e-11 80.5
19 TraesCS3D01G118200 chr5B 94.286 35 2 0 7561 7595 548158252 548158218 4.000000e-03 54.7
20 TraesCS3D01G118200 chr5B 94.286 35 2 0 7561 7595 548172832 548172798 4.000000e-03 54.7
21 TraesCS3D01G118200 chr4B 94.904 157 8 0 7383 7539 387499771 387499927 5.890000e-61 246.0
22 TraesCS3D01G118200 chr4B 94.340 159 9 0 7384 7542 648363593 648363435 2.120000e-60 244.0
23 TraesCS3D01G118200 chr6A 93.210 162 11 0 7384 7545 327762684 327762523 9.850000e-59 239.0
24 TraesCS3D01G118200 chr6A 92.727 55 2 1 7542 7596 263890502 263890450 2.270000e-10 78.7
25 TraesCS3D01G118200 chr1B 95.946 148 4 2 7383 7528 332090656 332090803 9.850000e-59 239.0
26 TraesCS3D01G118200 chr4D 93.377 151 8 1 7389 7539 196185324 196185176 9.920000e-54 222.0
27 TraesCS3D01G118200 chr2B 91.304 161 7 2 7380 7539 13911109 13911263 5.970000e-51 213.0
28 TraesCS3D01G118200 chr2B 87.421 159 18 2 7383 7540 41070507 41070350 1.680000e-41 182.0
29 TraesCS3D01G118200 chr2B 87.234 94 8 2 7283 7375 797736635 797736725 3.750000e-18 104.0
30 TraesCS3D01G118200 chr1A 91.379 58 5 0 7539 7596 531481282 531481339 6.320000e-11 80.5
31 TraesCS3D01G118200 chr6D 92.727 55 2 1 7542 7596 221846652 221846600 2.270000e-10 78.7
32 TraesCS3D01G118200 chr6B 89.286 56 4 1 7541 7596 345221017 345220964 1.370000e-07 69.4
33 TraesCS3D01G118200 chr5A 100.000 35 0 0 7542 7576 599211138 599211104 1.770000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G118200 chr3D 71965370 71972965 7595 False 14028.000000 14028 100.000000 1 7596 1 chr3D.!!$F1 7595
1 TraesCS3D01G118200 chr3B 117924490 117931956 7466 False 2042.333333 5930 95.423000 1 7284 6 chr3B.!!$F1 7283
2 TraesCS3D01G118200 chr3A 84185686 84193076 7390 False 1990.666667 5810 95.842833 1 7281 6 chr3A.!!$F1 7280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 564 1.047002 TTGTTCCATTGGCTGGTTGG 58.953 50.000 0.00 0.0 46.08 3.77 F
1868 1873 0.031178 CCACAGCAAGTTGTTCTGCC 59.969 55.000 4.48 0.0 0.00 4.85 F
2224 2229 1.250328 CCAAACTGCAAGCATCTCCA 58.750 50.000 0.00 0.0 37.60 3.86 F
2848 3140 2.303549 CTGCCCTTCTGCTACCTCCG 62.304 65.000 0.00 0.0 0.00 4.63 F
3805 4190 1.062587 GCTGCGCATTCAACTATCGTT 59.937 47.619 12.24 0.0 0.00 3.85 F
4431 4822 1.007387 GGGCAGCAAAAGACCAACG 60.007 57.895 0.00 0.0 33.02 4.10 F
4533 4924 2.042979 AGGGCCTGTTGGTACATTTGAT 59.957 45.455 4.50 0.0 39.30 2.57 F
6301 6695 0.370273 GTTTGCAGTGCCGTCTATCG 59.630 55.000 13.72 0.0 39.52 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2163 2168 0.035458 CCTGACTTTCGGCCTGAAGT 59.965 55.000 17.47 17.47 37.99 3.01 R
2848 3140 1.303317 ATCCAAGGGTGTTGTCGGC 60.303 57.895 0.00 0.00 0.00 5.54 R
3687 4072 2.357009 GCATTCCACAGGAGCAAGTATG 59.643 50.000 0.00 0.00 31.21 2.39 R
4389 4780 1.881973 GGCAAAGCTTGATGACTGACA 59.118 47.619 0.00 0.00 0.00 3.58 R
5169 5560 0.390603 TCCCGGATGTACTTGCAACG 60.391 55.000 0.73 0.00 0.00 4.10 R
5771 6162 2.568956 CCACATCTTCTGACCTTCCTCA 59.431 50.000 0.00 0.00 0.00 3.86 R
6444 6838 3.576356 CTGCCGCGCATTGGTAGG 61.576 66.667 8.75 0.00 38.13 3.18 R
7537 8023 0.032403 CCGAACCAAGTACACGACCA 59.968 55.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 7.028926 TCGTTCAATTTGCAACCTAAAACTA 57.971 32.000 0.00 0.00 0.00 2.24
78 79 6.913673 TCGTTCAATTTGCAACCTAAAACTAC 59.086 34.615 0.00 0.00 0.00 2.73
79 80 6.143278 CGTTCAATTTGCAACCTAAAACTACC 59.857 38.462 0.00 0.00 0.00 3.18
80 81 6.091718 TCAATTTGCAACCTAAAACTACCC 57.908 37.500 0.00 0.00 0.00 3.69
81 82 5.011227 TCAATTTGCAACCTAAAACTACCCC 59.989 40.000 0.00 0.00 0.00 4.95
82 83 2.590282 TGCAACCTAAAACTACCCCC 57.410 50.000 0.00 0.00 0.00 5.40
120 121 1.978617 CACTCAACCCACCCATGCC 60.979 63.158 0.00 0.00 0.00 4.40
121 122 2.440147 CTCAACCCACCCATGCCA 59.560 61.111 0.00 0.00 0.00 4.92
234 235 6.479006 TCTGAAACCAATGATGAAGATGAGT 58.521 36.000 0.00 0.00 0.00 3.41
244 245 7.836479 ATGATGAAGATGAGTAGATGACTGA 57.164 36.000 0.00 0.00 39.06 3.41
304 305 7.255277 GGCGATTAGATATTTCTTTCCTTTGCT 60.255 37.037 0.00 0.00 33.17 3.91
305 306 8.131731 GCGATTAGATATTTCTTTCCTTTGCTT 58.868 33.333 0.00 0.00 33.17 3.91
306 307 9.657121 CGATTAGATATTTCTTTCCTTTGCTTC 57.343 33.333 0.00 0.00 33.17 3.86
307 308 9.958234 GATTAGATATTTCTTTCCTTTGCTTCC 57.042 33.333 0.00 0.00 33.17 3.46
563 564 1.047002 TTGTTCCATTGGCTGGTTGG 58.953 50.000 0.00 0.00 46.08 3.77
579 580 2.163509 GTTGGCCTCCTCTCTTTTTCC 58.836 52.381 3.32 0.00 0.00 3.13
858 860 9.660180 GTAGCTTATAAGAAGAATAGGGAATGG 57.340 37.037 16.85 0.00 0.00 3.16
881 883 4.503296 GCATAGATGGATAAACTGACCGGT 60.503 45.833 6.92 6.92 0.00 5.28
1150 1154 3.897141 TGCGGACACCTGATGTTAATA 57.103 42.857 0.00 0.00 43.56 0.98
1344 1349 3.330701 TGTACCCTTCCATCTTTCTTGCT 59.669 43.478 0.00 0.00 0.00 3.91
1709 1714 3.013921 TGGTTGTGGTTGAAGTTCTGTC 58.986 45.455 4.17 0.00 0.00 3.51
1710 1715 2.031683 GGTTGTGGTTGAAGTTCTGTCG 59.968 50.000 4.17 0.00 0.00 4.35
1838 1843 2.943033 AGTTGCAGACTGTAACAACACC 59.057 45.455 30.17 9.52 43.89 4.16
1868 1873 0.031178 CCACAGCAAGTTGTTCTGCC 59.969 55.000 4.48 0.00 0.00 4.85
2128 2133 7.844009 AGAACCACGTGAGGAAAATAGTATTA 58.156 34.615 19.30 0.00 0.00 0.98
2130 2135 7.179076 ACCACGTGAGGAAAATAGTATTACT 57.821 36.000 19.30 1.30 0.00 2.24
2132 2137 7.039882 CCACGTGAGGAAAATAGTATTACTGT 58.960 38.462 19.30 0.00 0.00 3.55
2134 2139 9.577110 CACGTGAGGAAAATAGTATTACTGTTA 57.423 33.333 10.90 0.00 29.13 2.41
2135 2140 9.578439 ACGTGAGGAAAATAGTATTACTGTTAC 57.422 33.333 6.60 4.74 29.13 2.50
2136 2141 9.798994 CGTGAGGAAAATAGTATTACTGTTACT 57.201 33.333 6.60 4.31 29.13 2.24
2165 2170 9.448438 TGTAAATCAACAGTTTGCTATCATACT 57.552 29.630 0.00 0.00 35.35 2.12
2177 2182 3.743396 GCTATCATACTTCAGGCCGAAAG 59.257 47.826 16.03 16.03 31.71 2.62
2191 2196 2.029290 GCCGAAAGTCAGGAGTAAGTGA 60.029 50.000 0.00 0.00 0.00 3.41
2224 2229 1.250328 CCAAACTGCAAGCATCTCCA 58.750 50.000 0.00 0.00 37.60 3.86
2363 2607 6.974622 CGCTTTTCAGCTTGTTGGAATATATT 59.025 34.615 0.00 0.00 44.85 1.28
2364 2608 7.489113 CGCTTTTCAGCTTGTTGGAATATATTT 59.511 33.333 0.00 0.00 44.85 1.40
2411 2656 9.672673 AGTTTGCTATCATACTTCATACACTTT 57.327 29.630 0.00 0.00 31.79 2.66
2489 2736 2.949644 AGTTATGGGAAAATACGCAGCC 59.050 45.455 0.00 0.00 36.27 4.85
2848 3140 2.303549 CTGCCCTTCTGCTACCTCCG 62.304 65.000 0.00 0.00 0.00 4.63
3634 4019 5.335191 GCATTAGTTGAGCTAAAACACTGCT 60.335 40.000 12.84 0.00 42.35 4.24
3643 4028 4.039245 AGCTAAAACACTGCTACAGACAGA 59.961 41.667 0.78 0.00 38.55 3.41
3645 4030 5.062809 GCTAAAACACTGCTACAGACAGATC 59.937 44.000 0.78 0.00 38.55 2.75
3653 4038 5.068460 ACTGCTACAGACAGATCATCCTTAC 59.932 44.000 0.78 0.00 38.55 2.34
3687 4072 6.092944 TCCATTCAGCATTTGATCATTTTTGC 59.907 34.615 0.00 3.99 35.27 3.68
3759 4144 4.877378 TGGTTTACCACGTTCTATGACT 57.123 40.909 0.00 0.00 42.01 3.41
3760 4145 5.981088 TGGTTTACCACGTTCTATGACTA 57.019 39.130 0.00 0.00 42.01 2.59
3761 4146 5.713025 TGGTTTACCACGTTCTATGACTAC 58.287 41.667 0.00 0.00 42.01 2.73
3762 4147 5.477984 TGGTTTACCACGTTCTATGACTACT 59.522 40.000 0.00 0.00 42.01 2.57
3763 4148 5.803967 GGTTTACCACGTTCTATGACTACTG 59.196 44.000 0.00 0.00 35.64 2.74
3764 4149 6.385033 GTTTACCACGTTCTATGACTACTGT 58.615 40.000 0.00 0.00 0.00 3.55
3765 4150 6.579666 TTACCACGTTCTATGACTACTGTT 57.420 37.500 0.00 0.00 0.00 3.16
3766 4151 5.464030 ACCACGTTCTATGACTACTGTTT 57.536 39.130 0.00 0.00 0.00 2.83
3805 4190 1.062587 GCTGCGCATTCAACTATCGTT 59.937 47.619 12.24 0.00 0.00 3.85
3843 4228 4.955450 TCCATGTGGGAATCCATGTTTTAG 59.045 41.667 0.09 0.00 44.80 1.85
4185 4570 3.840831 TGGAAGTCCATCTGAAGCG 57.159 52.632 0.00 0.00 42.01 4.68
4236 4621 6.533367 CAGTTGAAGCTATACTCAGAAGAACC 59.467 42.308 0.00 0.00 0.00 3.62
4308 4699 1.872237 GCTGTTGCTGAACTCCGTACA 60.872 52.381 0.00 0.00 36.03 2.90
4431 4822 1.007387 GGGCAGCAAAAGACCAACG 60.007 57.895 0.00 0.00 33.02 4.10
4533 4924 2.042979 AGGGCCTGTTGGTACATTTGAT 59.957 45.455 4.50 0.00 39.30 2.57
4560 4951 3.289834 CTGGCCGCTGTTTGTGCT 61.290 61.111 0.00 0.00 0.00 4.40
4617 5008 2.475200 AGAGCGCAACAAACTCAAAC 57.525 45.000 11.47 0.00 32.71 2.93
4631 5022 7.903062 ACAAACTCAAACGTAAAAGACTCTAC 58.097 34.615 0.00 0.00 0.00 2.59
5050 5441 5.651387 TCAACAACACATTGAGGAAAACA 57.349 34.783 0.00 0.00 39.30 2.83
5169 5560 2.158943 AGAGGCTAGGCGAAATGGTAAC 60.159 50.000 11.10 0.00 0.00 2.50
5284 5675 2.572290 GAGGCTCTCAGACTCTCCTAC 58.428 57.143 7.40 0.00 46.93 3.18
5331 5722 4.103365 ACTATGCTTCTCTGTTGTCTCG 57.897 45.455 0.00 0.00 0.00 4.04
5361 5752 3.192212 GGCATAAGCTTATTGCATCTCCC 59.808 47.826 27.21 14.44 45.94 4.30
5601 5992 7.624549 TCTGCAGGTAAAGATTTATTCAGACT 58.375 34.615 15.13 0.00 0.00 3.24
5676 6067 3.595173 TCTCACGTGGGAACATACATTG 58.405 45.455 17.66 0.00 46.14 2.82
5771 6162 1.347050 CCCTGGATTGCTCGAGATGAT 59.653 52.381 18.75 5.95 29.23 2.45
6026 6417 5.576384 TGTCGTACTTTGTTGTCGTTAAAGT 59.424 36.000 0.00 0.00 44.29 2.66
6211 6605 7.824289 CCTCTCAAATCTGTTAAAGGTATGTCA 59.176 37.037 0.00 0.00 0.00 3.58
6301 6695 0.370273 GTTTGCAGTGCCGTCTATCG 59.630 55.000 13.72 0.00 39.52 2.92
6337 6731 4.735132 TCCCACGCTAGCGCACAC 62.735 66.667 35.63 0.00 44.19 3.82
6343 6737 2.503375 GCTAGCGCACACGTACGT 60.503 61.111 16.72 16.72 42.83 3.57
6427 6821 0.605319 TTCAAGGCGAGCAACGGAAT 60.605 50.000 5.57 0.00 42.83 3.01
7036 7431 5.238868 CCTGATTCTCCATCTACAAATGCTG 59.761 44.000 0.00 0.00 32.34 4.41
7041 7436 2.092429 TCCATCTACAAATGCTGGGGTC 60.092 50.000 0.00 0.00 0.00 4.46
7044 7439 3.737559 TCTACAAATGCTGGGGTCAAT 57.262 42.857 0.00 0.00 0.00 2.57
7046 7441 2.307496 ACAAATGCTGGGGTCAATCA 57.693 45.000 0.00 0.00 0.00 2.57
7047 7442 1.895131 ACAAATGCTGGGGTCAATCAC 59.105 47.619 0.00 0.00 0.00 3.06
7048 7443 2.173519 CAAATGCTGGGGTCAATCACT 58.826 47.619 0.00 0.00 0.00 3.41
7054 7449 2.029918 GCTGGGGTCAATCACTTTTGTC 60.030 50.000 0.00 0.00 0.00 3.18
7072 7467 7.544566 ACTTTTGTCGTACGATTCTATCAACAT 59.455 33.333 22.57 4.95 0.00 2.71
7118 7596 3.302347 AAGCGAGCTCCCTGGTTCG 62.302 63.158 8.47 0.00 0.00 3.95
7121 7600 1.738099 CGAGCTCCCTGGTTCGTTG 60.738 63.158 8.47 0.00 0.00 4.10
7124 7603 1.600916 GCTCCCTGGTTCGTTGCTT 60.601 57.895 0.00 0.00 0.00 3.91
7130 7609 1.927174 CCTGGTTCGTTGCTTAGATCG 59.073 52.381 0.00 0.00 0.00 3.69
7137 7616 3.250744 TCGTTGCTTAGATCGAAACCAG 58.749 45.455 0.00 0.00 0.00 4.00
7138 7617 2.348666 CGTTGCTTAGATCGAAACCAGG 59.651 50.000 0.00 0.00 0.00 4.45
7139 7618 2.678336 GTTGCTTAGATCGAAACCAGGG 59.322 50.000 0.00 0.00 0.00 4.45
7141 7620 2.093658 TGCTTAGATCGAAACCAGGGTC 60.094 50.000 0.00 0.00 0.00 4.46
7142 7621 2.810650 CTTAGATCGAAACCAGGGTCG 58.189 52.381 8.23 8.23 38.62 4.79
7144 7623 1.079405 GATCGAAACCAGGGTCGCA 60.079 57.895 9.45 1.13 37.19 5.10
7145 7624 0.672401 GATCGAAACCAGGGTCGCAA 60.672 55.000 9.45 0.00 37.19 4.85
7146 7625 0.035439 ATCGAAACCAGGGTCGCAAT 60.035 50.000 9.45 0.00 37.19 3.56
7147 7626 0.953471 TCGAAACCAGGGTCGCAATG 60.953 55.000 9.45 0.00 37.19 2.82
7148 7627 0.953471 CGAAACCAGGGTCGCAATGA 60.953 55.000 2.12 0.00 0.00 2.57
7150 7629 1.200020 GAAACCAGGGTCGCAATGAAG 59.800 52.381 0.00 0.00 0.00 3.02
7192 7673 5.479124 AAGGCTGCAAAATTCAAAGAGAT 57.521 34.783 0.50 0.00 0.00 2.75
7212 7693 5.274718 AGATACGATAGCGAAAACACAGAG 58.725 41.667 7.69 0.00 41.64 3.35
7241 7722 1.669115 CGGACACAGTTCTGGCCTG 60.669 63.158 3.32 2.92 37.15 4.85
7242 7723 1.968540 GGACACAGTTCTGGCCTGC 60.969 63.158 3.32 0.00 36.23 4.85
7243 7724 1.227943 GACACAGTTCTGGCCTGCA 60.228 57.895 3.32 0.00 33.09 4.41
7244 7725 0.819259 GACACAGTTCTGGCCTGCAA 60.819 55.000 3.32 0.00 33.09 4.08
7245 7726 0.395586 ACACAGTTCTGGCCTGCAAA 60.396 50.000 3.32 0.00 33.09 3.68
7274 7760 2.009051 CTCATGCAGGCGTCATAACAA 58.991 47.619 0.00 0.00 0.00 2.83
7284 7770 3.243602 GGCGTCATAACAACCAAAACCTT 60.244 43.478 0.00 0.00 0.00 3.50
7285 7771 4.364860 GCGTCATAACAACCAAAACCTTT 58.635 39.130 0.00 0.00 0.00 3.11
7286 7772 4.443063 GCGTCATAACAACCAAAACCTTTC 59.557 41.667 0.00 0.00 0.00 2.62
7287 7773 5.735070 GCGTCATAACAACCAAAACCTTTCT 60.735 40.000 0.00 0.00 0.00 2.52
7288 7774 6.270064 CGTCATAACAACCAAAACCTTTCTT 58.730 36.000 0.00 0.00 0.00 2.52
7289 7775 6.754675 CGTCATAACAACCAAAACCTTTCTTT 59.245 34.615 0.00 0.00 0.00 2.52
7290 7776 7.043656 CGTCATAACAACCAAAACCTTTCTTTC 60.044 37.037 0.00 0.00 0.00 2.62
7291 7777 6.975772 TCATAACAACCAAAACCTTTCTTTCG 59.024 34.615 0.00 0.00 0.00 3.46
7292 7778 4.118093 ACAACCAAAACCTTTCTTTCGG 57.882 40.909 0.00 0.00 0.00 4.30
7293 7779 3.512329 ACAACCAAAACCTTTCTTTCGGT 59.488 39.130 0.00 0.00 34.27 4.69
7294 7780 4.705991 ACAACCAAAACCTTTCTTTCGGTA 59.294 37.500 0.00 0.00 32.07 4.02
7295 7781 5.163591 ACAACCAAAACCTTTCTTTCGGTAG 60.164 40.000 0.00 0.00 32.07 3.18
7296 7782 3.317149 ACCAAAACCTTTCTTTCGGTAGC 59.683 43.478 0.00 0.00 32.07 3.58
7297 7783 3.551551 CAAAACCTTTCTTTCGGTAGCG 58.448 45.455 8.29 8.29 32.07 4.26
7298 7784 2.538512 AACCTTTCTTTCGGTAGCGT 57.461 45.000 14.79 0.00 32.07 5.07
7299 7785 3.665745 AACCTTTCTTTCGGTAGCGTA 57.334 42.857 14.79 1.01 32.07 4.42
7300 7786 3.227810 ACCTTTCTTTCGGTAGCGTAG 57.772 47.619 14.79 12.67 0.00 3.51
7301 7787 2.094338 ACCTTTCTTTCGGTAGCGTAGG 60.094 50.000 14.79 13.50 0.00 3.18
7302 7788 1.925185 CTTTCTTTCGGTAGCGTAGGC 59.075 52.381 14.79 0.00 40.37 3.93
7303 7789 0.179156 TTCTTTCGGTAGCGTAGGCG 60.179 55.000 14.79 0.40 46.35 5.52
7304 7790 1.138247 CTTTCGGTAGCGTAGGCGT 59.862 57.895 14.79 0.00 46.35 5.68
7305 7791 0.378257 CTTTCGGTAGCGTAGGCGTA 59.622 55.000 14.79 0.00 46.35 4.42
7306 7792 0.378257 TTTCGGTAGCGTAGGCGTAG 59.622 55.000 14.79 0.00 46.35 3.51
7307 7793 0.744414 TTCGGTAGCGTAGGCGTAGT 60.744 55.000 14.79 0.00 46.35 2.73
7308 7794 1.154205 TCGGTAGCGTAGGCGTAGTC 61.154 60.000 14.79 0.00 46.35 2.59
7310 7796 0.307146 GGTAGCGTAGGCGTAGTCTG 59.693 60.000 1.05 0.00 46.61 3.51
7311 7797 1.012841 GTAGCGTAGGCGTAGTCTGT 58.987 55.000 1.05 0.00 46.61 3.41
7312 7798 1.012086 TAGCGTAGGCGTAGTCTGTG 58.988 55.000 1.05 0.00 46.61 3.66
7313 7799 0.959372 AGCGTAGGCGTAGTCTGTGT 60.959 55.000 1.05 0.00 46.61 3.72
7314 7800 0.797249 GCGTAGGCGTAGTCTGTGTG 60.797 60.000 0.00 0.00 46.61 3.82
7315 7801 0.800631 CGTAGGCGTAGTCTGTGTGA 59.199 55.000 0.00 0.00 46.61 3.58
7316 7802 1.400846 CGTAGGCGTAGTCTGTGTGAT 59.599 52.381 0.00 0.00 46.61 3.06
7317 7803 2.539142 CGTAGGCGTAGTCTGTGTGATC 60.539 54.545 0.00 0.00 46.61 2.92
7318 7804 0.818296 AGGCGTAGTCTGTGTGATCC 59.182 55.000 0.00 0.00 46.61 3.36
7319 7805 0.525668 GGCGTAGTCTGTGTGATCCG 60.526 60.000 0.00 0.00 0.00 4.18
7320 7806 0.170561 GCGTAGTCTGTGTGATCCGT 59.829 55.000 0.00 0.00 0.00 4.69
7321 7807 1.794437 GCGTAGTCTGTGTGATCCGTC 60.794 57.143 0.00 0.00 0.00 4.79
7322 7808 1.738350 CGTAGTCTGTGTGATCCGTCT 59.262 52.381 0.00 0.00 0.00 4.18
7323 7809 2.934553 CGTAGTCTGTGTGATCCGTCTA 59.065 50.000 0.00 0.00 0.00 2.59
7324 7810 3.560481 CGTAGTCTGTGTGATCCGTCTAT 59.440 47.826 0.00 0.00 0.00 1.98
7325 7811 4.318903 CGTAGTCTGTGTGATCCGTCTATC 60.319 50.000 0.00 0.00 0.00 2.08
7326 7812 3.892284 AGTCTGTGTGATCCGTCTATCT 58.108 45.455 0.00 0.00 0.00 1.98
7327 7813 4.274147 AGTCTGTGTGATCCGTCTATCTT 58.726 43.478 0.00 0.00 0.00 2.40
7328 7814 5.437946 AGTCTGTGTGATCCGTCTATCTTA 58.562 41.667 0.00 0.00 0.00 2.10
7329 7815 5.529430 AGTCTGTGTGATCCGTCTATCTTAG 59.471 44.000 0.00 0.00 0.00 2.18
7330 7816 4.822350 TCTGTGTGATCCGTCTATCTTAGG 59.178 45.833 0.00 0.00 0.00 2.69
7331 7817 4.788679 TGTGTGATCCGTCTATCTTAGGA 58.211 43.478 0.00 0.00 37.17 2.94
7332 7818 5.386060 TGTGTGATCCGTCTATCTTAGGAT 58.614 41.667 0.00 0.00 45.32 3.24
7335 7821 4.886247 GATCCGTCTATCTTAGGATCGG 57.114 50.000 7.46 7.02 46.33 4.18
7336 7822 2.434428 TCCGTCTATCTTAGGATCGGC 58.566 52.381 8.17 0.00 36.11 5.54
7337 7823 2.160205 CCGTCTATCTTAGGATCGGCA 58.840 52.381 1.32 0.00 33.71 5.69
7338 7824 2.095161 CCGTCTATCTTAGGATCGGCAC 60.095 54.545 1.32 0.00 33.71 5.01
7339 7825 2.814919 CGTCTATCTTAGGATCGGCACT 59.185 50.000 0.00 0.00 33.71 4.40
7340 7826 3.365465 CGTCTATCTTAGGATCGGCACTG 60.365 52.174 0.00 0.00 33.71 3.66
7341 7827 3.570550 GTCTATCTTAGGATCGGCACTGT 59.429 47.826 0.00 0.00 33.71 3.55
7342 7828 4.760715 GTCTATCTTAGGATCGGCACTGTA 59.239 45.833 0.00 0.00 33.71 2.74
7343 7829 5.416326 GTCTATCTTAGGATCGGCACTGTAT 59.584 44.000 0.00 0.00 33.71 2.29
7344 7830 4.527509 ATCTTAGGATCGGCACTGTATG 57.472 45.455 0.00 0.00 0.00 2.39
7345 7831 3.562182 TCTTAGGATCGGCACTGTATGA 58.438 45.455 0.00 0.00 0.00 2.15
7346 7832 3.570125 TCTTAGGATCGGCACTGTATGAG 59.430 47.826 0.00 0.00 0.00 2.90
7347 7833 1.043816 AGGATCGGCACTGTATGAGG 58.956 55.000 0.00 0.00 0.00 3.86
7348 7834 1.040646 GGATCGGCACTGTATGAGGA 58.959 55.000 0.00 0.00 0.00 3.71
7349 7835 1.269831 GGATCGGCACTGTATGAGGAC 60.270 57.143 0.00 0.00 0.00 3.85
7350 7836 1.683917 GATCGGCACTGTATGAGGACT 59.316 52.381 0.00 0.00 0.00 3.85
7351 7837 2.430248 TCGGCACTGTATGAGGACTA 57.570 50.000 0.00 0.00 0.00 2.59
7352 7838 2.022195 TCGGCACTGTATGAGGACTAC 58.978 52.381 0.00 0.00 0.00 2.73
7353 7839 1.067212 CGGCACTGTATGAGGACTACC 59.933 57.143 0.00 0.00 0.00 3.18
7371 7857 9.845214 AGGACTACCTCACCATCTTATATTATT 57.155 33.333 0.00 0.00 44.13 1.40
7373 7859 9.790389 GACTACCTCACCATCTTATATTATTCG 57.210 37.037 0.00 0.00 0.00 3.34
7374 7860 8.750298 ACTACCTCACCATCTTATATTATTCGG 58.250 37.037 0.00 0.00 0.00 4.30
7375 7861 7.554959 ACCTCACCATCTTATATTATTCGGT 57.445 36.000 0.00 0.00 0.00 4.69
7376 7862 7.612677 ACCTCACCATCTTATATTATTCGGTC 58.387 38.462 0.00 0.00 0.00 4.79
7377 7863 6.752351 CCTCACCATCTTATATTATTCGGTCG 59.248 42.308 0.00 0.00 0.00 4.79
7378 7864 7.223260 TCACCATCTTATATTATTCGGTCGT 57.777 36.000 0.00 0.00 0.00 4.34
7379 7865 7.088272 TCACCATCTTATATTATTCGGTCGTG 58.912 38.462 0.00 0.00 0.00 4.35
7380 7866 6.866770 CACCATCTTATATTATTCGGTCGTGT 59.133 38.462 0.00 0.00 0.00 4.49
7381 7867 8.024865 CACCATCTTATATTATTCGGTCGTGTA 58.975 37.037 0.00 0.00 0.00 2.90
7382 7868 8.025445 ACCATCTTATATTATTCGGTCGTGTAC 58.975 37.037 0.00 0.00 0.00 2.90
7383 7869 8.024865 CCATCTTATATTATTCGGTCGTGTACA 58.975 37.037 0.00 0.00 0.00 2.90
7384 7870 9.062674 CATCTTATATTATTCGGTCGTGTACAG 57.937 37.037 0.00 0.00 0.00 2.74
7385 7871 7.587629 TCTTATATTATTCGGTCGTGTACAGG 58.412 38.462 9.30 9.30 0.00 4.00
7386 7872 2.945447 TTATTCGGTCGTGTACAGGG 57.055 50.000 15.15 1.67 0.00 4.45
7387 7873 1.105457 TATTCGGTCGTGTACAGGGG 58.895 55.000 15.15 5.91 0.00 4.79
7388 7874 2.234913 ATTCGGTCGTGTACAGGGGC 62.235 60.000 15.15 8.68 0.00 5.80
7389 7875 4.789075 CGGTCGTGTACAGGGGCG 62.789 72.222 15.15 6.50 0.00 6.13
7390 7876 3.376078 GGTCGTGTACAGGGGCGA 61.376 66.667 15.15 8.81 0.00 5.54
7391 7877 2.652530 GTCGTGTACAGGGGCGAA 59.347 61.111 15.15 0.00 35.08 4.70
7392 7878 1.445582 GTCGTGTACAGGGGCGAAG 60.446 63.158 15.15 0.00 35.08 3.79
7412 7898 6.310197 CGAAGCTAGAAGAAAAGTTCAATGG 58.690 40.000 0.00 0.00 0.00 3.16
7413 7899 6.581171 AAGCTAGAAGAAAAGTTCAATGGG 57.419 37.500 0.00 0.00 0.00 4.00
7414 7900 5.012893 AGCTAGAAGAAAAGTTCAATGGGG 58.987 41.667 0.00 0.00 0.00 4.96
7415 7901 4.767409 GCTAGAAGAAAAGTTCAATGGGGT 59.233 41.667 0.00 0.00 0.00 4.95
7416 7902 5.106118 GCTAGAAGAAAAGTTCAATGGGGTC 60.106 44.000 0.00 0.00 0.00 4.46
7417 7903 4.803452 AGAAGAAAAGTTCAATGGGGTCA 58.197 39.130 0.00 0.00 0.00 4.02
7418 7904 5.397360 AGAAGAAAAGTTCAATGGGGTCAT 58.603 37.500 0.00 0.00 34.56 3.06
7419 7905 5.244626 AGAAGAAAAGTTCAATGGGGTCATG 59.755 40.000 0.00 0.00 33.18 3.07
7420 7906 4.482990 AGAAAAGTTCAATGGGGTCATGT 58.517 39.130 0.00 0.00 33.18 3.21
7421 7907 4.524328 AGAAAAGTTCAATGGGGTCATGTC 59.476 41.667 0.00 0.00 33.18 3.06
7422 7908 3.814504 AAGTTCAATGGGGTCATGTCT 57.185 42.857 0.00 0.00 33.18 3.41
7423 7909 4.927267 AAGTTCAATGGGGTCATGTCTA 57.073 40.909 0.00 0.00 33.18 2.59
7424 7910 5.456921 AAGTTCAATGGGGTCATGTCTAT 57.543 39.130 0.00 0.00 33.18 1.98
7425 7911 4.785301 AGTTCAATGGGGTCATGTCTATG 58.215 43.478 0.00 0.00 33.18 2.23
7426 7912 4.474651 AGTTCAATGGGGTCATGTCTATGA 59.525 41.667 0.00 0.00 40.92 2.15
7435 7921 2.832838 TCATGTCTATGACAGTGGGGT 58.167 47.619 6.55 0.00 46.04 4.95
7436 7922 2.766263 TCATGTCTATGACAGTGGGGTC 59.234 50.000 6.55 0.00 46.04 4.46
7443 7929 2.030027 TGACAGTGGGGTCATCTTCT 57.970 50.000 0.00 0.00 42.56 2.85
7444 7930 3.184382 TGACAGTGGGGTCATCTTCTA 57.816 47.619 0.00 0.00 42.56 2.10
7445 7931 3.724478 TGACAGTGGGGTCATCTTCTAT 58.276 45.455 0.00 0.00 42.56 1.98
7446 7932 4.104086 TGACAGTGGGGTCATCTTCTATT 58.896 43.478 0.00 0.00 42.56 1.73
7447 7933 5.277250 TGACAGTGGGGTCATCTTCTATTA 58.723 41.667 0.00 0.00 42.56 0.98
7448 7934 5.724370 TGACAGTGGGGTCATCTTCTATTAA 59.276 40.000 0.00 0.00 42.56 1.40
7449 7935 6.386927 TGACAGTGGGGTCATCTTCTATTAAT 59.613 38.462 0.00 0.00 42.56 1.40
7450 7936 6.595682 ACAGTGGGGTCATCTTCTATTAATG 58.404 40.000 0.00 0.00 0.00 1.90
7451 7937 6.386927 ACAGTGGGGTCATCTTCTATTAATGA 59.613 38.462 0.00 0.00 0.00 2.57
7452 7938 7.092444 ACAGTGGGGTCATCTTCTATTAATGAA 60.092 37.037 0.00 0.00 31.61 2.57
7453 7939 7.941238 CAGTGGGGTCATCTTCTATTAATGAAT 59.059 37.037 0.00 0.00 31.61 2.57
7454 7940 9.170890 AGTGGGGTCATCTTCTATTAATGAATA 57.829 33.333 0.00 0.00 31.61 1.75
7455 7941 9.442047 GTGGGGTCATCTTCTATTAATGAATAG 57.558 37.037 3.60 3.60 44.14 1.73
7456 7942 9.170890 TGGGGTCATCTTCTATTAATGAATAGT 57.829 33.333 9.31 0.00 43.50 2.12
7457 7943 9.442047 GGGGTCATCTTCTATTAATGAATAGTG 57.558 37.037 9.31 1.78 43.50 2.74
7480 7966 9.310449 AGTGATTAGTACTTAGTTTCTGAAGGA 57.690 33.333 0.00 0.00 0.00 3.36
7485 7971 7.674471 AGTACTTAGTTTCTGAAGGATTTGC 57.326 36.000 0.00 0.00 0.00 3.68
7486 7972 7.454225 AGTACTTAGTTTCTGAAGGATTTGCT 58.546 34.615 0.00 0.00 0.00 3.91
7487 7973 6.566197 ACTTAGTTTCTGAAGGATTTGCTG 57.434 37.500 0.00 0.00 0.00 4.41
7488 7974 6.299141 ACTTAGTTTCTGAAGGATTTGCTGA 58.701 36.000 0.00 0.00 0.00 4.26
7489 7975 6.944862 ACTTAGTTTCTGAAGGATTTGCTGAT 59.055 34.615 0.00 0.00 0.00 2.90
7490 7976 7.449704 ACTTAGTTTCTGAAGGATTTGCTGATT 59.550 33.333 0.00 0.00 0.00 2.57
7491 7977 6.264841 AGTTTCTGAAGGATTTGCTGATTC 57.735 37.500 0.00 0.00 0.00 2.52
7492 7978 5.184671 AGTTTCTGAAGGATTTGCTGATTCC 59.815 40.000 0.00 0.00 0.00 3.01
7493 7979 4.305539 TCTGAAGGATTTGCTGATTCCA 57.694 40.909 0.00 0.00 31.49 3.53
7494 7980 4.863548 TCTGAAGGATTTGCTGATTCCAT 58.136 39.130 0.00 0.00 31.49 3.41
7495 7981 5.266788 TCTGAAGGATTTGCTGATTCCATT 58.733 37.500 0.00 0.00 31.49 3.16
7496 7982 5.126545 TCTGAAGGATTTGCTGATTCCATTG 59.873 40.000 0.00 0.00 31.49 2.82
7497 7983 4.160814 TGAAGGATTTGCTGATTCCATTGG 59.839 41.667 0.00 0.00 31.49 3.16
7498 7984 3.036091 AGGATTTGCTGATTCCATTGGG 58.964 45.455 2.09 0.00 31.49 4.12
7499 7985 2.103601 GGATTTGCTGATTCCATTGGGG 59.896 50.000 2.09 0.00 38.37 4.96
7500 7986 2.323999 TTTGCTGATTCCATTGGGGT 57.676 45.000 2.09 0.00 38.11 4.95
7501 7987 1.851304 TTGCTGATTCCATTGGGGTC 58.149 50.000 2.09 2.30 38.11 4.46
7502 7988 0.703488 TGCTGATTCCATTGGGGTCA 59.297 50.000 2.09 6.79 38.11 4.02
7503 7989 1.076841 TGCTGATTCCATTGGGGTCAA 59.923 47.619 2.09 0.00 38.11 3.18
7504 7990 2.292389 TGCTGATTCCATTGGGGTCAAT 60.292 45.455 2.09 0.00 43.79 2.57
7505 7991 2.767960 GCTGATTCCATTGGGGTCAATT 59.232 45.455 2.09 0.00 41.29 2.32
7506 7992 3.431207 GCTGATTCCATTGGGGTCAATTG 60.431 47.826 2.09 0.00 41.29 2.32
7507 7993 4.025360 CTGATTCCATTGGGGTCAATTGA 58.975 43.478 3.38 3.38 41.29 2.57
7508 7994 3.768757 TGATTCCATTGGGGTCAATTGAC 59.231 43.478 27.16 27.16 41.29 3.18
7520 8006 4.983671 GTCAATTGACCCCAATCCTTAC 57.016 45.455 25.26 0.00 41.84 2.34
7521 8007 4.340617 GTCAATTGACCCCAATCCTTACA 58.659 43.478 25.26 0.00 41.84 2.41
7522 8008 4.770010 GTCAATTGACCCCAATCCTTACAA 59.230 41.667 25.26 0.00 41.84 2.41
7523 8009 5.016173 TCAATTGACCCCAATCCTTACAAG 58.984 41.667 3.38 0.00 41.84 3.16
7524 8010 3.981212 ATTGACCCCAATCCTTACAAGG 58.019 45.455 1.26 1.26 38.57 3.61
7525 8011 1.005450 TGACCCCAATCCTTACAAGGC 59.995 52.381 2.93 0.00 46.06 4.35
7526 8012 1.005450 GACCCCAATCCTTACAAGGCA 59.995 52.381 2.93 0.00 46.06 4.75
7527 8013 1.005924 ACCCCAATCCTTACAAGGCAG 59.994 52.381 2.93 0.00 46.06 4.85
7528 8014 1.106285 CCCAATCCTTACAAGGCAGC 58.894 55.000 2.93 0.00 46.06 5.25
7529 8015 1.341383 CCCAATCCTTACAAGGCAGCT 60.341 52.381 2.93 0.00 46.06 4.24
7530 8016 2.019984 CCAATCCTTACAAGGCAGCTC 58.980 52.381 2.93 0.00 46.06 4.09
7531 8017 2.019984 CAATCCTTACAAGGCAGCTCC 58.980 52.381 2.93 0.00 46.06 4.70
7532 8018 0.179000 ATCCTTACAAGGCAGCTCCG 59.821 55.000 2.93 0.00 46.06 4.63
7533 8019 1.192146 TCCTTACAAGGCAGCTCCGT 61.192 55.000 2.93 0.00 46.06 4.69
7534 8020 0.741221 CCTTACAAGGCAGCTCCGTC 60.741 60.000 0.00 0.00 39.76 4.79
7535 8021 0.741221 CTTACAAGGCAGCTCCGTCC 60.741 60.000 0.00 0.00 40.77 4.79
7536 8022 2.180159 TTACAAGGCAGCTCCGTCCC 62.180 60.000 0.00 0.00 40.77 4.46
7537 8023 3.710722 CAAGGCAGCTCCGTCCCT 61.711 66.667 0.00 0.00 40.77 4.20
7538 8024 3.710722 AAGGCAGCTCCGTCCCTG 61.711 66.667 0.00 0.00 40.77 4.45
7541 8027 4.459089 GCAGCTCCGTCCCTGGTC 62.459 72.222 0.00 0.00 0.00 4.02
7542 8028 4.135153 CAGCTCCGTCCCTGGTCG 62.135 72.222 0.00 0.00 0.00 4.79
7543 8029 4.680537 AGCTCCGTCCCTGGTCGT 62.681 66.667 2.39 0.00 0.00 4.34
7544 8030 4.436998 GCTCCGTCCCTGGTCGTG 62.437 72.222 2.39 0.00 0.00 4.35
7545 8031 2.989824 CTCCGTCCCTGGTCGTGT 60.990 66.667 2.39 0.00 0.00 4.49
7546 8032 1.676635 CTCCGTCCCTGGTCGTGTA 60.677 63.158 2.39 0.00 0.00 2.90
7547 8033 1.930908 CTCCGTCCCTGGTCGTGTAC 61.931 65.000 2.39 0.00 0.00 2.90
7548 8034 1.975407 CCGTCCCTGGTCGTGTACT 60.975 63.158 2.39 0.00 0.00 2.73
7549 8035 1.530013 CCGTCCCTGGTCGTGTACTT 61.530 60.000 2.39 0.00 0.00 2.24
7550 8036 0.388134 CGTCCCTGGTCGTGTACTTG 60.388 60.000 0.00 0.00 0.00 3.16
7551 8037 0.037605 GTCCCTGGTCGTGTACTTGG 60.038 60.000 0.00 0.00 0.00 3.61
7552 8038 0.470456 TCCCTGGTCGTGTACTTGGT 60.470 55.000 0.00 0.00 0.00 3.67
7553 8039 0.395312 CCCTGGTCGTGTACTTGGTT 59.605 55.000 0.00 0.00 0.00 3.67
7554 8040 1.607251 CCCTGGTCGTGTACTTGGTTC 60.607 57.143 0.00 0.00 0.00 3.62
7555 8041 1.415374 CTGGTCGTGTACTTGGTTCG 58.585 55.000 0.00 0.00 0.00 3.95
7556 8042 0.032403 TGGTCGTGTACTTGGTTCGG 59.968 55.000 0.00 0.00 0.00 4.30
7557 8043 0.032540 GGTCGTGTACTTGGTTCGGT 59.967 55.000 0.00 0.00 0.00 4.69
7558 8044 1.134226 GTCGTGTACTTGGTTCGGTG 58.866 55.000 0.00 0.00 0.00 4.94
7559 8045 1.031235 TCGTGTACTTGGTTCGGTGA 58.969 50.000 0.00 0.00 0.00 4.02
7560 8046 1.614903 TCGTGTACTTGGTTCGGTGAT 59.385 47.619 0.00 0.00 0.00 3.06
7561 8047 2.036217 TCGTGTACTTGGTTCGGTGATT 59.964 45.455 0.00 0.00 0.00 2.57
7562 8048 2.156891 CGTGTACTTGGTTCGGTGATTG 59.843 50.000 0.00 0.00 0.00 2.67
7563 8049 2.095919 GTGTACTTGGTTCGGTGATTGC 60.096 50.000 0.00 0.00 0.00 3.56
7564 8050 2.224426 TGTACTTGGTTCGGTGATTGCT 60.224 45.455 0.00 0.00 0.00 3.91
7565 8051 1.981256 ACTTGGTTCGGTGATTGCTT 58.019 45.000 0.00 0.00 0.00 3.91
7566 8052 2.306847 ACTTGGTTCGGTGATTGCTTT 58.693 42.857 0.00 0.00 0.00 3.51
7567 8053 3.482436 ACTTGGTTCGGTGATTGCTTTA 58.518 40.909 0.00 0.00 0.00 1.85
7568 8054 4.079253 ACTTGGTTCGGTGATTGCTTTAT 58.921 39.130 0.00 0.00 0.00 1.40
7569 8055 5.250200 ACTTGGTTCGGTGATTGCTTTATA 58.750 37.500 0.00 0.00 0.00 0.98
7570 8056 5.885912 ACTTGGTTCGGTGATTGCTTTATAT 59.114 36.000 0.00 0.00 0.00 0.86
7571 8057 7.051623 ACTTGGTTCGGTGATTGCTTTATATA 58.948 34.615 0.00 0.00 0.00 0.86
7572 8058 7.719633 ACTTGGTTCGGTGATTGCTTTATATAT 59.280 33.333 0.00 0.00 0.00 0.86
7573 8059 9.214957 CTTGGTTCGGTGATTGCTTTATATATA 57.785 33.333 0.00 0.00 0.00 0.86
7574 8060 9.562408 TTGGTTCGGTGATTGCTTTATATATAA 57.438 29.630 0.81 0.81 0.00 0.98
7575 8061 9.562408 TGGTTCGGTGATTGCTTTATATATAAA 57.438 29.630 15.47 15.47 0.00 1.40
7579 8065 9.478768 TCGGTGATTGCTTTATATATAAAACGA 57.521 29.630 16.69 13.15 32.39 3.85
7580 8066 9.741168 CGGTGATTGCTTTATATATAAAACGAG 57.259 33.333 16.69 8.05 32.39 4.18
7588 8074 9.513554 GCTTTATATATAAAACGAGACGAAAGC 57.486 33.333 16.69 10.91 37.71 3.51
7590 8076 9.754382 TTTATATATAAAACGAGACGAAAGCCT 57.246 29.630 14.26 0.00 29.93 4.58
7591 8077 5.968387 ATATAAAACGAGACGAAAGCCTG 57.032 39.130 0.00 0.00 0.00 4.85
7592 8078 1.949465 AAAACGAGACGAAAGCCTGT 58.051 45.000 0.00 0.00 0.00 4.00
7593 8079 1.949465 AAACGAGACGAAAGCCTGTT 58.051 45.000 0.00 0.00 0.00 3.16
7594 8080 1.949465 AACGAGACGAAAGCCTGTTT 58.051 45.000 0.00 0.00 0.00 2.83
7595 8081 1.499049 ACGAGACGAAAGCCTGTTTC 58.501 50.000 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.048643 GTCTTTTGGACTTAAGAAAGAGCCC 60.049 44.000 10.09 0.00 41.46 5.19
88 89 0.392327 TGAGTGTGGGTGTGTGTGTG 60.392 55.000 0.00 0.00 0.00 3.82
89 90 0.326595 TTGAGTGTGGGTGTGTGTGT 59.673 50.000 0.00 0.00 0.00 3.72
91 92 0.393808 GGTTGAGTGTGGGTGTGTGT 60.394 55.000 0.00 0.00 0.00 3.72
95 96 1.226262 GTGGGTTGAGTGTGGGTGT 59.774 57.895 0.00 0.00 0.00 4.16
96 97 1.528309 GGTGGGTTGAGTGTGGGTG 60.528 63.158 0.00 0.00 0.00 4.61
234 235 2.023984 TCCAAGGGCTCTCAGTCATCTA 60.024 50.000 0.00 0.00 0.00 1.98
244 245 1.433121 GATCAGGATCCAAGGGCTCT 58.567 55.000 15.82 0.00 31.76 4.09
304 305 3.316868 GTGTTTGGTTTGAGGAATCGGAA 59.683 43.478 0.00 0.00 0.00 4.30
305 306 2.882137 GTGTTTGGTTTGAGGAATCGGA 59.118 45.455 0.00 0.00 0.00 4.55
306 307 2.030274 GGTGTTTGGTTTGAGGAATCGG 60.030 50.000 0.00 0.00 0.00 4.18
307 308 2.621055 TGGTGTTTGGTTTGAGGAATCG 59.379 45.455 0.00 0.00 0.00 3.34
563 564 3.491342 ACAAAGGAAAAAGAGAGGAGGC 58.509 45.455 0.00 0.00 0.00 4.70
579 580 6.863126 AGAAATATTGCCGAAACTTGACAAAG 59.137 34.615 0.00 0.00 39.49 2.77
858 860 3.997021 CCGGTCAGTTTATCCATCTATGC 59.003 47.826 0.00 0.00 0.00 3.14
1119 1123 1.301423 GTGTCCGCAAAGTTACACCA 58.699 50.000 0.00 0.00 36.97 4.17
1121 1125 1.263217 CAGGTGTCCGCAAAGTTACAC 59.737 52.381 0.00 0.00 41.14 2.90
1132 1136 3.795101 GTCGTATTAACATCAGGTGTCCG 59.205 47.826 0.00 0.00 41.14 4.79
1133 1137 3.795101 CGTCGTATTAACATCAGGTGTCC 59.205 47.826 0.00 0.00 41.14 4.02
1150 1154 2.676342 AGAAAAACAACAGAAGCGTCGT 59.324 40.909 0.00 0.00 0.00 4.34
1323 1328 3.956744 AGCAAGAAAGATGGAAGGGTAC 58.043 45.455 0.00 0.00 0.00 3.34
1344 1349 4.916983 ACTTTGAATTAGCTGCACACAA 57.083 36.364 1.02 0.00 0.00 3.33
1484 1489 1.904287 AAGTTGCTGGGCGAAATGTA 58.096 45.000 0.00 0.00 0.00 2.29
1709 1714 3.667960 GCCAAAAGTACACTTCATGAGCG 60.668 47.826 0.00 0.00 34.61 5.03
1710 1715 3.503748 AGCCAAAAGTACACTTCATGAGC 59.496 43.478 0.00 9.49 34.61 4.26
1838 1843 2.046507 GCTGTGGCCTGGTCAGAG 60.047 66.667 20.19 20.19 31.51 3.35
1868 1873 5.606505 GGAGAGTAATTAGCTTTCTCCTGG 58.393 45.833 18.84 0.00 46.65 4.45
2036 2041 3.402628 AGTCACATTGCCTTAAGTCGT 57.597 42.857 0.97 0.00 0.00 4.34
2065 2070 3.627577 TCTCCATTCGCTAATTTTGCTCC 59.372 43.478 1.56 0.00 0.00 4.70
2139 2144 9.448438 AGTATGATAGCAAACTGTTGATTTACA 57.552 29.630 0.00 0.00 36.83 2.41
2142 2147 9.013229 TGAAGTATGATAGCAAACTGTTGATTT 57.987 29.630 0.00 0.00 36.83 2.17
2143 2148 8.565896 TGAAGTATGATAGCAAACTGTTGATT 57.434 30.769 0.00 0.00 36.83 2.57
2144 2149 7.281774 CCTGAAGTATGATAGCAAACTGTTGAT 59.718 37.037 0.00 0.00 36.83 2.57
2145 2150 6.595326 CCTGAAGTATGATAGCAAACTGTTGA 59.405 38.462 0.00 0.00 36.83 3.18
2146 2151 6.676456 GCCTGAAGTATGATAGCAAACTGTTG 60.676 42.308 0.00 0.00 37.83 3.33
2147 2152 5.355350 GCCTGAAGTATGATAGCAAACTGTT 59.645 40.000 0.00 0.00 0.00 3.16
2148 2153 4.878397 GCCTGAAGTATGATAGCAAACTGT 59.122 41.667 0.00 0.00 0.00 3.55
2149 2154 4.274459 GGCCTGAAGTATGATAGCAAACTG 59.726 45.833 0.00 0.00 0.00 3.16
2150 2155 4.455606 GGCCTGAAGTATGATAGCAAACT 58.544 43.478 0.00 0.00 0.00 2.66
2151 2156 3.248602 CGGCCTGAAGTATGATAGCAAAC 59.751 47.826 0.00 0.00 0.00 2.93
2152 2157 3.133901 TCGGCCTGAAGTATGATAGCAAA 59.866 43.478 0.00 0.00 0.00 3.68
2153 2158 2.698274 TCGGCCTGAAGTATGATAGCAA 59.302 45.455 0.00 0.00 0.00 3.91
2154 2159 2.316108 TCGGCCTGAAGTATGATAGCA 58.684 47.619 0.00 0.00 0.00 3.49
2155 2160 3.386768 TTCGGCCTGAAGTATGATAGC 57.613 47.619 0.00 0.00 31.44 2.97
2156 2161 4.950050 ACTTTCGGCCTGAAGTATGATAG 58.050 43.478 16.34 9.14 37.99 2.08
2157 2162 4.404394 TGACTTTCGGCCTGAAGTATGATA 59.596 41.667 17.46 3.70 37.99 2.15
2158 2163 3.197766 TGACTTTCGGCCTGAAGTATGAT 59.802 43.478 17.46 0.00 37.99 2.45
2159 2164 2.565391 TGACTTTCGGCCTGAAGTATGA 59.435 45.455 17.46 5.59 37.99 2.15
2160 2165 2.932614 CTGACTTTCGGCCTGAAGTATG 59.067 50.000 17.46 11.05 37.99 2.39
2161 2166 2.093447 CCTGACTTTCGGCCTGAAGTAT 60.093 50.000 17.46 5.54 37.99 2.12
2162 2167 1.275291 CCTGACTTTCGGCCTGAAGTA 59.725 52.381 17.46 8.13 37.99 2.24
2163 2168 0.035458 CCTGACTTTCGGCCTGAAGT 59.965 55.000 17.47 17.47 37.99 3.01
2164 2169 0.321671 TCCTGACTTTCGGCCTGAAG 59.678 55.000 12.03 12.03 37.99 3.02
2165 2170 0.321671 CTCCTGACTTTCGGCCTGAA 59.678 55.000 0.00 3.25 33.85 3.02
2166 2171 0.832135 ACTCCTGACTTTCGGCCTGA 60.832 55.000 0.00 0.00 0.00 3.86
2167 2172 0.895530 TACTCCTGACTTTCGGCCTG 59.104 55.000 0.00 0.00 0.00 4.85
2191 2196 3.821033 GCAGTTTGGTCTTGATTACAGGT 59.179 43.478 0.00 0.00 0.00 4.00
2224 2229 3.885297 GCACACACTCCCATTAGCATATT 59.115 43.478 0.00 0.00 0.00 1.28
2489 2736 1.373570 GAGGCTTCAATTCTCCACCG 58.626 55.000 0.00 0.00 0.00 4.94
2622 2914 8.405531 GTTTATGGCAAGAATTAGCATCTGTTA 58.594 33.333 0.00 0.00 0.00 2.41
2830 3122 2.359169 CGGAGGTAGCAGAAGGGCA 61.359 63.158 0.00 0.00 35.83 5.36
2848 3140 1.303317 ATCCAAGGGTGTTGTCGGC 60.303 57.895 0.00 0.00 0.00 5.54
3208 3545 6.434652 ACACCCAAAACATACGATATGGAAAA 59.565 34.615 0.00 0.00 0.00 2.29
3634 4019 8.589701 TTAACTGTAAGGATGATCTGTCTGTA 57.410 34.615 0.00 0.00 39.30 2.74
3643 4028 9.699410 TGAATGGAAATTAACTGTAAGGATGAT 57.301 29.630 0.00 0.00 39.30 2.45
3645 4030 7.917505 GCTGAATGGAAATTAACTGTAAGGATG 59.082 37.037 0.00 0.00 39.30 3.51
3653 4038 8.712285 ATCAAATGCTGAATGGAAATTAACTG 57.288 30.769 0.00 0.00 37.67 3.16
3687 4072 2.357009 GCATTCCACAGGAGCAAGTATG 59.643 50.000 0.00 0.00 31.21 2.39
3748 4133 9.790389 AATCTCTAAAACAGTAGTCATAGAACG 57.210 33.333 0.00 0.00 29.71 3.95
3758 4143 7.962964 TGGTGTGAAATCTCTAAAACAGTAG 57.037 36.000 0.00 0.00 0.00 2.57
3759 4144 8.740123 TTTGGTGTGAAATCTCTAAAACAGTA 57.260 30.769 0.00 0.00 0.00 2.74
3760 4145 7.639113 TTTGGTGTGAAATCTCTAAAACAGT 57.361 32.000 0.00 0.00 0.00 3.55
3761 4146 6.638468 GCTTTGGTGTGAAATCTCTAAAACAG 59.362 38.462 0.00 0.00 0.00 3.16
3762 4147 6.321181 AGCTTTGGTGTGAAATCTCTAAAACA 59.679 34.615 0.00 0.00 0.00 2.83
3763 4148 6.638468 CAGCTTTGGTGTGAAATCTCTAAAAC 59.362 38.462 0.00 0.00 0.00 2.43
3764 4149 6.735694 GCAGCTTTGGTGTGAAATCTCTAAAA 60.736 38.462 0.00 0.00 33.19 1.52
3765 4150 5.278463 GCAGCTTTGGTGTGAAATCTCTAAA 60.278 40.000 0.00 0.00 33.19 1.85
3766 4151 4.216257 GCAGCTTTGGTGTGAAATCTCTAA 59.784 41.667 0.00 0.00 33.19 2.10
3805 4190 5.482175 CCCACATGGAAGGGTGTAAATAAAA 59.518 40.000 10.97 0.00 40.34 1.52
3843 4228 6.292328 GCAGCAATCAGTAAAACCAAGAAAAC 60.292 38.462 0.00 0.00 0.00 2.43
4185 4570 5.067674 TGCCACAAATATTCTCATAAGGCAC 59.932 40.000 0.00 0.00 42.84 5.01
4389 4780 1.881973 GGCAAAGCTTGATGACTGACA 59.118 47.619 0.00 0.00 0.00 3.58
4431 4822 5.313712 TCAGAAGAATGGTTTTCACTACCC 58.686 41.667 0.00 0.00 34.66 3.69
4617 5008 7.313646 TCAGGATCTTTGTAGAGTCTTTTACG 58.686 38.462 0.00 0.00 32.92 3.18
4631 5022 2.795231 TCCAGGCTTCAGGATCTTTG 57.205 50.000 0.00 0.00 0.00 2.77
4926 5317 4.096231 CCATGCAAGTCGATCAAATGGTAA 59.904 41.667 0.00 0.00 0.00 2.85
5128 5519 5.219343 TCTTCTGAGCATTTCAAGAGTGA 57.781 39.130 0.00 0.00 34.81 3.41
5169 5560 0.390603 TCCCGGATGTACTTGCAACG 60.391 55.000 0.73 0.00 0.00 4.10
5284 5675 6.813649 TCCTGTTTTTCTGAGATAACAGATCG 59.186 38.462 26.34 16.28 46.43 3.69
5601 5992 4.446371 ACCAAATTTCATTGCGACCAAAA 58.554 34.783 0.00 0.00 34.05 2.44
5697 6088 7.446625 AGAGTCCATAAATATGACAGGAAATGC 59.553 37.037 1.98 0.00 35.75 3.56
5698 6089 8.915057 AGAGTCCATAAATATGACAGGAAATG 57.085 34.615 1.98 0.00 35.75 2.32
5771 6162 2.568956 CCACATCTTCTGACCTTCCTCA 59.431 50.000 0.00 0.00 0.00 3.86
6026 6417 7.414429 CCAAAGCAAGAAAATGAGTCGATGATA 60.414 37.037 0.00 0.00 0.00 2.15
6301 6695 3.816367 GAGGCAGCGGATGGTAGGC 62.816 68.421 0.00 0.00 0.00 3.93
6444 6838 3.576356 CTGCCGCGCATTGGTAGG 61.576 66.667 8.75 0.00 38.13 3.18
7000 7394 4.079253 GGAGAATCAGGTAAAGCAACCAA 58.921 43.478 5.79 0.00 42.40 3.67
7036 7431 2.227194 ACGACAAAAGTGATTGACCCC 58.773 47.619 0.00 0.00 34.38 4.95
7041 7436 6.153212 AGAATCGTACGACAAAAGTGATTG 57.847 37.500 22.14 0.00 36.37 2.67
7044 7439 6.614160 TGATAGAATCGTACGACAAAAGTGA 58.386 36.000 22.14 1.12 0.00 3.41
7046 7441 6.864685 TGTTGATAGAATCGTACGACAAAAGT 59.135 34.615 22.14 5.35 0.00 2.66
7047 7442 7.273188 TGTTGATAGAATCGTACGACAAAAG 57.727 36.000 22.14 0.00 0.00 2.27
7048 7443 7.821595 ATGTTGATAGAATCGTACGACAAAA 57.178 32.000 22.14 14.11 0.00 2.44
7118 7596 2.678336 CCCTGGTTTCGATCTAAGCAAC 59.322 50.000 9.59 0.00 33.16 4.17
7121 7600 2.552031 GACCCTGGTTTCGATCTAAGC 58.448 52.381 0.00 0.00 0.00 3.09
7124 7603 0.458669 GCGACCCTGGTTTCGATCTA 59.541 55.000 16.62 0.00 37.43 1.98
7130 7609 1.200020 CTTCATTGCGACCCTGGTTTC 59.800 52.381 0.00 0.00 0.00 2.78
7137 7616 2.380084 TACTGACTTCATTGCGACCC 57.620 50.000 0.00 0.00 0.00 4.46
7138 7617 6.213677 TGTATATACTGACTTCATTGCGACC 58.786 40.000 13.89 0.00 0.00 4.79
7139 7618 7.306632 GGTTGTATATACTGACTTCATTGCGAC 60.307 40.741 13.89 0.00 0.00 5.19
7141 7620 6.701841 AGGTTGTATATACTGACTTCATTGCG 59.298 38.462 13.89 0.00 0.00 4.85
7142 7621 8.438676 AAGGTTGTATATACTGACTTCATTGC 57.561 34.615 13.89 0.21 0.00 3.56
7146 7625 9.653287 CTTTGAAGGTTGTATATACTGACTTCA 57.347 33.333 25.49 25.49 37.59 3.02
7147 7626 9.099454 CCTTTGAAGGTTGTATATACTGACTTC 57.901 37.037 22.78 22.78 41.41 3.01
7192 7673 3.119602 AGCTCTGTGTTTTCGCTATCGTA 60.120 43.478 0.00 0.00 36.96 3.43
7241 7722 3.054878 CTGCATGAGTTTCCTGTTTTGC 58.945 45.455 0.00 0.00 0.00 3.68
7242 7723 3.645884 CCTGCATGAGTTTCCTGTTTTG 58.354 45.455 0.00 0.00 0.00 2.44
7243 7724 2.036346 GCCTGCATGAGTTTCCTGTTTT 59.964 45.455 0.00 0.00 0.00 2.43
7244 7725 1.615392 GCCTGCATGAGTTTCCTGTTT 59.385 47.619 0.00 0.00 0.00 2.83
7245 7726 1.251251 GCCTGCATGAGTTTCCTGTT 58.749 50.000 0.00 0.00 0.00 3.16
7284 7770 0.179156 CGCCTACGCTACCGAAAGAA 60.179 55.000 0.00 0.00 38.29 2.52
7285 7771 1.308069 ACGCCTACGCTACCGAAAGA 61.308 55.000 0.00 0.00 45.53 2.52
7286 7772 0.378257 TACGCCTACGCTACCGAAAG 59.622 55.000 0.00 0.00 45.53 2.62
7287 7773 0.378257 CTACGCCTACGCTACCGAAA 59.622 55.000 0.00 0.00 45.53 3.46
7288 7774 0.744414 ACTACGCCTACGCTACCGAA 60.744 55.000 0.00 0.00 45.53 4.30
7289 7775 1.153369 ACTACGCCTACGCTACCGA 60.153 57.895 0.00 0.00 45.53 4.69
7290 7776 1.156645 AGACTACGCCTACGCTACCG 61.157 60.000 0.00 0.00 45.53 4.02
7291 7777 0.307146 CAGACTACGCCTACGCTACC 59.693 60.000 0.00 0.00 45.53 3.18
7292 7778 1.012841 ACAGACTACGCCTACGCTAC 58.987 55.000 0.00 0.00 45.53 3.58
7293 7779 1.012086 CACAGACTACGCCTACGCTA 58.988 55.000 0.00 0.00 45.53 4.26
7294 7780 0.959372 ACACAGACTACGCCTACGCT 60.959 55.000 0.00 0.00 45.53 5.07
7295 7781 0.797249 CACACAGACTACGCCTACGC 60.797 60.000 0.00 0.00 45.53 4.42
7297 7783 2.223525 GGATCACACAGACTACGCCTAC 60.224 54.545 0.00 0.00 0.00 3.18
7298 7784 2.022195 GGATCACACAGACTACGCCTA 58.978 52.381 0.00 0.00 0.00 3.93
7299 7785 0.818296 GGATCACACAGACTACGCCT 59.182 55.000 0.00 0.00 0.00 5.52
7300 7786 0.525668 CGGATCACACAGACTACGCC 60.526 60.000 0.00 0.00 0.00 5.68
7301 7787 0.170561 ACGGATCACACAGACTACGC 59.829 55.000 0.00 0.00 0.00 4.42
7302 7788 1.738350 AGACGGATCACACAGACTACG 59.262 52.381 0.00 0.00 0.00 3.51
7303 7789 4.817464 AGATAGACGGATCACACAGACTAC 59.183 45.833 0.00 0.00 0.00 2.73
7304 7790 5.037383 AGATAGACGGATCACACAGACTA 57.963 43.478 0.00 0.00 0.00 2.59
7305 7791 3.892284 AGATAGACGGATCACACAGACT 58.108 45.455 0.00 0.00 0.00 3.24
7306 7792 4.640789 AAGATAGACGGATCACACAGAC 57.359 45.455 0.00 0.00 0.00 3.51
7307 7793 4.822350 CCTAAGATAGACGGATCACACAGA 59.178 45.833 0.00 0.00 0.00 3.41
7308 7794 4.822350 TCCTAAGATAGACGGATCACACAG 59.178 45.833 0.00 0.00 0.00 3.66
7309 7795 4.788679 TCCTAAGATAGACGGATCACACA 58.211 43.478 0.00 0.00 0.00 3.72
7310 7796 5.968528 ATCCTAAGATAGACGGATCACAC 57.031 43.478 0.00 0.00 30.69 3.82
7314 7800 3.065648 GCCGATCCTAAGATAGACGGATC 59.934 52.174 0.00 7.00 45.33 3.36
7315 7801 3.018149 GCCGATCCTAAGATAGACGGAT 58.982 50.000 0.00 0.00 38.90 4.18
7316 7802 2.224695 TGCCGATCCTAAGATAGACGGA 60.225 50.000 0.00 0.00 38.23 4.69
7317 7803 2.095161 GTGCCGATCCTAAGATAGACGG 60.095 54.545 0.00 0.00 38.62 4.79
7318 7804 2.814919 AGTGCCGATCCTAAGATAGACG 59.185 50.000 0.00 0.00 30.90 4.18
7319 7805 3.570550 ACAGTGCCGATCCTAAGATAGAC 59.429 47.826 0.00 0.00 30.90 2.59
7320 7806 3.833732 ACAGTGCCGATCCTAAGATAGA 58.166 45.455 0.00 0.00 30.90 1.98
7321 7807 5.416013 TCATACAGTGCCGATCCTAAGATAG 59.584 44.000 0.00 0.00 30.90 2.08
7322 7808 5.321927 TCATACAGTGCCGATCCTAAGATA 58.678 41.667 0.00 0.00 30.90 1.98
7323 7809 4.152647 TCATACAGTGCCGATCCTAAGAT 58.847 43.478 0.00 0.00 34.57 2.40
7324 7810 3.562182 TCATACAGTGCCGATCCTAAGA 58.438 45.455 0.00 0.00 0.00 2.10
7325 7811 3.305676 CCTCATACAGTGCCGATCCTAAG 60.306 52.174 0.00 0.00 0.00 2.18
7326 7812 2.628178 CCTCATACAGTGCCGATCCTAA 59.372 50.000 0.00 0.00 0.00 2.69
7327 7813 2.158519 TCCTCATACAGTGCCGATCCTA 60.159 50.000 0.00 0.00 0.00 2.94
7328 7814 1.043816 CCTCATACAGTGCCGATCCT 58.956 55.000 0.00 0.00 0.00 3.24
7329 7815 1.040646 TCCTCATACAGTGCCGATCC 58.959 55.000 0.00 0.00 0.00 3.36
7330 7816 1.683917 AGTCCTCATACAGTGCCGATC 59.316 52.381 0.00 0.00 0.00 3.69
7331 7817 1.781786 AGTCCTCATACAGTGCCGAT 58.218 50.000 0.00 0.00 0.00 4.18
7332 7818 2.022195 GTAGTCCTCATACAGTGCCGA 58.978 52.381 0.00 0.00 0.00 5.54
7333 7819 1.067212 GGTAGTCCTCATACAGTGCCG 59.933 57.143 0.00 0.00 0.00 5.69
7334 7820 2.389715 AGGTAGTCCTCATACAGTGCC 58.610 52.381 0.00 0.00 40.58 5.01
7347 7833 9.790389 CGAATAATATAAGATGGTGAGGTAGTC 57.210 37.037 0.00 0.00 0.00 2.59
7348 7834 8.750298 CCGAATAATATAAGATGGTGAGGTAGT 58.250 37.037 0.00 0.00 0.00 2.73
7349 7835 8.750298 ACCGAATAATATAAGATGGTGAGGTAG 58.250 37.037 0.00 0.00 0.00 3.18
7350 7836 8.660295 ACCGAATAATATAAGATGGTGAGGTA 57.340 34.615 0.00 0.00 0.00 3.08
7351 7837 7.554959 ACCGAATAATATAAGATGGTGAGGT 57.445 36.000 0.00 0.00 0.00 3.85
7352 7838 6.752351 CGACCGAATAATATAAGATGGTGAGG 59.248 42.308 0.00 0.00 0.00 3.86
7353 7839 7.273598 CACGACCGAATAATATAAGATGGTGAG 59.726 40.741 0.00 0.00 0.00 3.51
7354 7840 7.088272 CACGACCGAATAATATAAGATGGTGA 58.912 38.462 0.00 0.00 0.00 4.02
7355 7841 6.866770 ACACGACCGAATAATATAAGATGGTG 59.133 38.462 0.00 0.00 0.00 4.17
7356 7842 6.989659 ACACGACCGAATAATATAAGATGGT 58.010 36.000 0.00 0.00 0.00 3.55
7357 7843 8.024865 TGTACACGACCGAATAATATAAGATGG 58.975 37.037 0.00 0.00 0.00 3.51
7358 7844 8.959734 TGTACACGACCGAATAATATAAGATG 57.040 34.615 0.00 0.00 0.00 2.90
7359 7845 8.242053 CCTGTACACGACCGAATAATATAAGAT 58.758 37.037 0.00 0.00 0.00 2.40
7360 7846 7.308770 CCCTGTACACGACCGAATAATATAAGA 60.309 40.741 0.00 0.00 0.00 2.10
7361 7847 6.805271 CCCTGTACACGACCGAATAATATAAG 59.195 42.308 0.00 0.00 0.00 1.73
7362 7848 6.294675 CCCCTGTACACGACCGAATAATATAA 60.295 42.308 0.00 0.00 0.00 0.98
7363 7849 5.183713 CCCCTGTACACGACCGAATAATATA 59.816 44.000 0.00 0.00 0.00 0.86
7364 7850 4.021719 CCCCTGTACACGACCGAATAATAT 60.022 45.833 0.00 0.00 0.00 1.28
7365 7851 3.318839 CCCCTGTACACGACCGAATAATA 59.681 47.826 0.00 0.00 0.00 0.98
7366 7852 2.101917 CCCCTGTACACGACCGAATAAT 59.898 50.000 0.00 0.00 0.00 1.28
7367 7853 1.477700 CCCCTGTACACGACCGAATAA 59.522 52.381 0.00 0.00 0.00 1.40
7368 7854 1.105457 CCCCTGTACACGACCGAATA 58.895 55.000 0.00 0.00 0.00 1.75
7369 7855 1.895238 CCCCTGTACACGACCGAAT 59.105 57.895 0.00 0.00 0.00 3.34
7370 7856 2.934570 GCCCCTGTACACGACCGAA 61.935 63.158 0.00 0.00 0.00 4.30
7371 7857 3.376078 GCCCCTGTACACGACCGA 61.376 66.667 0.00 0.00 0.00 4.69
7372 7858 4.789075 CGCCCCTGTACACGACCG 62.789 72.222 0.00 0.00 0.00 4.79
7373 7859 2.830704 CTTCGCCCCTGTACACGACC 62.831 65.000 5.86 0.00 33.69 4.79
7374 7860 1.445582 CTTCGCCCCTGTACACGAC 60.446 63.158 5.86 0.00 33.69 4.34
7375 7861 2.967397 CTTCGCCCCTGTACACGA 59.033 61.111 2.49 2.49 0.00 4.35
7376 7862 1.940883 TAGCTTCGCCCCTGTACACG 61.941 60.000 0.00 0.00 0.00 4.49
7377 7863 0.179108 CTAGCTTCGCCCCTGTACAC 60.179 60.000 0.00 0.00 0.00 2.90
7378 7864 0.323999 TCTAGCTTCGCCCCTGTACA 60.324 55.000 0.00 0.00 0.00 2.90
7379 7865 0.822164 TTCTAGCTTCGCCCCTGTAC 59.178 55.000 0.00 0.00 0.00 2.90
7380 7866 1.112113 CTTCTAGCTTCGCCCCTGTA 58.888 55.000 0.00 0.00 0.00 2.74
7381 7867 0.614979 TCTTCTAGCTTCGCCCCTGT 60.615 55.000 0.00 0.00 0.00 4.00
7382 7868 0.537188 TTCTTCTAGCTTCGCCCCTG 59.463 55.000 0.00 0.00 0.00 4.45
7383 7869 1.276622 TTTCTTCTAGCTTCGCCCCT 58.723 50.000 0.00 0.00 0.00 4.79
7384 7870 2.010497 CTTTTCTTCTAGCTTCGCCCC 58.990 52.381 0.00 0.00 0.00 5.80
7385 7871 2.701107 ACTTTTCTTCTAGCTTCGCCC 58.299 47.619 0.00 0.00 0.00 6.13
7386 7872 3.746492 TGAACTTTTCTTCTAGCTTCGCC 59.254 43.478 0.00 0.00 0.00 5.54
7387 7873 4.992381 TGAACTTTTCTTCTAGCTTCGC 57.008 40.909 0.00 0.00 0.00 4.70
7388 7874 6.310197 CCATTGAACTTTTCTTCTAGCTTCG 58.690 40.000 0.00 0.00 0.00 3.79
7389 7875 6.349694 CCCCATTGAACTTTTCTTCTAGCTTC 60.350 42.308 0.00 0.00 0.00 3.86
7390 7876 5.478332 CCCCATTGAACTTTTCTTCTAGCTT 59.522 40.000 0.00 0.00 0.00 3.74
7391 7877 5.012893 CCCCATTGAACTTTTCTTCTAGCT 58.987 41.667 0.00 0.00 0.00 3.32
7392 7878 4.767409 ACCCCATTGAACTTTTCTTCTAGC 59.233 41.667 0.00 0.00 0.00 3.42
7393 7879 6.003950 TGACCCCATTGAACTTTTCTTCTAG 58.996 40.000 0.00 0.00 0.00 2.43
7394 7880 5.947663 TGACCCCATTGAACTTTTCTTCTA 58.052 37.500 0.00 0.00 0.00 2.10
7395 7881 4.803452 TGACCCCATTGAACTTTTCTTCT 58.197 39.130 0.00 0.00 0.00 2.85
7396 7882 5.011023 ACATGACCCCATTGAACTTTTCTTC 59.989 40.000 0.00 0.00 0.00 2.87
7397 7883 4.901250 ACATGACCCCATTGAACTTTTCTT 59.099 37.500 0.00 0.00 0.00 2.52
7398 7884 4.482990 ACATGACCCCATTGAACTTTTCT 58.517 39.130 0.00 0.00 0.00 2.52
7399 7885 4.524328 AGACATGACCCCATTGAACTTTTC 59.476 41.667 0.00 0.00 0.00 2.29
7400 7886 4.482990 AGACATGACCCCATTGAACTTTT 58.517 39.130 0.00 0.00 0.00 2.27
7401 7887 4.118168 AGACATGACCCCATTGAACTTT 57.882 40.909 0.00 0.00 0.00 2.66
7402 7888 3.814504 AGACATGACCCCATTGAACTT 57.185 42.857 0.00 0.00 0.00 2.66
7403 7889 4.474651 TCATAGACATGACCCCATTGAACT 59.525 41.667 0.00 0.00 36.22 3.01
7404 7890 4.780815 TCATAGACATGACCCCATTGAAC 58.219 43.478 0.00 0.00 36.22 3.18
7415 7901 2.766263 GACCCCACTGTCATAGACATGA 59.234 50.000 0.00 0.00 41.94 3.07
7416 7902 2.501316 TGACCCCACTGTCATAGACATG 59.499 50.000 0.00 0.00 41.94 3.21
7417 7903 2.832838 TGACCCCACTGTCATAGACAT 58.167 47.619 0.00 0.00 41.94 3.06
7418 7904 2.319025 TGACCCCACTGTCATAGACA 57.681 50.000 0.00 0.00 40.22 3.41
7425 7911 4.762289 AATAGAAGATGACCCCACTGTC 57.238 45.455 0.00 0.00 35.77 3.51
7426 7912 6.386927 TCATTAATAGAAGATGACCCCACTGT 59.613 38.462 0.00 0.00 0.00 3.55
7427 7913 6.830912 TCATTAATAGAAGATGACCCCACTG 58.169 40.000 0.00 0.00 0.00 3.66
7428 7914 7.451731 TTCATTAATAGAAGATGACCCCACT 57.548 36.000 0.00 0.00 30.10 4.00
7429 7915 9.442047 CTATTCATTAATAGAAGATGACCCCAC 57.558 37.037 1.01 0.00 45.07 4.61
7430 7916 9.170890 ACTATTCATTAATAGAAGATGACCCCA 57.829 33.333 12.58 0.00 45.07 4.96
7431 7917 9.442047 CACTATTCATTAATAGAAGATGACCCC 57.558 37.037 12.58 0.00 45.07 4.95
7454 7940 9.310449 TCCTTCAGAAACTAAGTACTAATCACT 57.690 33.333 0.00 0.00 0.00 3.41
7459 7945 9.216117 GCAAATCCTTCAGAAACTAAGTACTAA 57.784 33.333 0.00 0.00 0.00 2.24
7460 7946 8.594550 AGCAAATCCTTCAGAAACTAAGTACTA 58.405 33.333 0.00 0.00 0.00 1.82
7461 7947 7.389053 CAGCAAATCCTTCAGAAACTAAGTACT 59.611 37.037 0.00 0.00 0.00 2.73
7462 7948 7.387948 TCAGCAAATCCTTCAGAAACTAAGTAC 59.612 37.037 0.00 0.00 0.00 2.73
7463 7949 7.450074 TCAGCAAATCCTTCAGAAACTAAGTA 58.550 34.615 0.00 0.00 0.00 2.24
7464 7950 6.299141 TCAGCAAATCCTTCAGAAACTAAGT 58.701 36.000 0.00 0.00 0.00 2.24
7465 7951 6.808008 TCAGCAAATCCTTCAGAAACTAAG 57.192 37.500 0.00 0.00 0.00 2.18
7466 7952 7.094205 GGAATCAGCAAATCCTTCAGAAACTAA 60.094 37.037 0.00 0.00 0.00 2.24
7467 7953 6.375455 GGAATCAGCAAATCCTTCAGAAACTA 59.625 38.462 0.00 0.00 0.00 2.24
7468 7954 5.184671 GGAATCAGCAAATCCTTCAGAAACT 59.815 40.000 0.00 0.00 0.00 2.66
7469 7955 5.047802 TGGAATCAGCAAATCCTTCAGAAAC 60.048 40.000 0.00 0.00 34.24 2.78
7470 7956 5.078949 TGGAATCAGCAAATCCTTCAGAAA 58.921 37.500 0.00 0.00 34.24 2.52
7471 7957 4.665451 TGGAATCAGCAAATCCTTCAGAA 58.335 39.130 0.00 0.00 34.24 3.02
7472 7958 4.305539 TGGAATCAGCAAATCCTTCAGA 57.694 40.909 0.00 0.00 34.24 3.27
7473 7959 5.348986 CAATGGAATCAGCAAATCCTTCAG 58.651 41.667 0.00 0.00 34.24 3.02
7474 7960 4.160814 CCAATGGAATCAGCAAATCCTTCA 59.839 41.667 0.00 0.00 34.24 3.02
7475 7961 4.442472 CCCAATGGAATCAGCAAATCCTTC 60.442 45.833 0.00 0.00 34.24 3.46
7476 7962 3.453353 CCCAATGGAATCAGCAAATCCTT 59.547 43.478 0.00 0.00 34.24 3.36
7477 7963 3.036091 CCCAATGGAATCAGCAAATCCT 58.964 45.455 0.00 0.00 34.24 3.24
7478 7964 2.103601 CCCCAATGGAATCAGCAAATCC 59.896 50.000 0.00 0.00 35.39 3.01
7479 7965 2.767960 ACCCCAATGGAATCAGCAAATC 59.232 45.455 0.00 0.00 38.00 2.17
7480 7966 2.767960 GACCCCAATGGAATCAGCAAAT 59.232 45.455 0.00 0.00 38.00 2.32
7481 7967 2.178580 GACCCCAATGGAATCAGCAAA 58.821 47.619 0.00 0.00 38.00 3.68
7482 7968 1.076841 TGACCCCAATGGAATCAGCAA 59.923 47.619 0.00 0.00 38.00 3.91
7483 7969 0.703488 TGACCCCAATGGAATCAGCA 59.297 50.000 0.00 0.00 38.00 4.41
7484 7970 1.851304 TTGACCCCAATGGAATCAGC 58.149 50.000 0.00 0.00 38.00 4.26
7485 7971 4.025360 TCAATTGACCCCAATGGAATCAG 58.975 43.478 3.38 0.00 41.84 2.90
7486 7972 3.768757 GTCAATTGACCCCAATGGAATCA 59.231 43.478 25.26 0.49 42.62 2.57
7487 7973 4.391405 GTCAATTGACCCCAATGGAATC 57.609 45.455 25.26 0.00 42.62 2.52
7499 7985 4.340617 TGTAAGGATTGGGGTCAATTGAC 58.659 43.478 27.16 27.16 43.08 3.18
7500 7986 4.666412 TGTAAGGATTGGGGTCAATTGA 57.334 40.909 3.38 3.38 43.08 2.57
7501 7987 5.329035 CTTGTAAGGATTGGGGTCAATTG 57.671 43.478 0.00 0.00 43.08 2.32
7516 8002 0.741221 GGACGGAGCTGCCTTGTAAG 60.741 60.000 0.00 0.00 0.00 2.34
7517 8003 1.295423 GGACGGAGCTGCCTTGTAA 59.705 57.895 0.00 0.00 0.00 2.41
7518 8004 2.656069 GGGACGGAGCTGCCTTGTA 61.656 63.158 0.00 0.00 0.00 2.41
7519 8005 4.021925 GGGACGGAGCTGCCTTGT 62.022 66.667 0.00 0.00 0.00 3.16
7520 8006 3.710722 AGGGACGGAGCTGCCTTG 61.711 66.667 0.00 0.00 0.00 3.61
7521 8007 3.710722 CAGGGACGGAGCTGCCTT 61.711 66.667 0.00 0.00 28.59 4.35
7524 8010 4.459089 GACCAGGGACGGAGCTGC 62.459 72.222 0.00 0.00 0.00 5.25
7525 8011 4.135153 CGACCAGGGACGGAGCTG 62.135 72.222 0.00 0.00 0.00 4.24
7526 8012 4.680537 ACGACCAGGGACGGAGCT 62.681 66.667 14.14 0.00 37.58 4.09
7527 8013 4.436998 CACGACCAGGGACGGAGC 62.437 72.222 14.14 0.00 37.58 4.70
7528 8014 1.676635 TACACGACCAGGGACGGAG 60.677 63.158 14.14 8.76 37.58 4.63
7529 8015 1.973281 GTACACGACCAGGGACGGA 60.973 63.158 14.14 0.00 37.58 4.69
7530 8016 1.530013 AAGTACACGACCAGGGACGG 61.530 60.000 14.14 6.22 37.58 4.79
7531 8017 0.388134 CAAGTACACGACCAGGGACG 60.388 60.000 8.57 8.57 39.00 4.79
7532 8018 0.037605 CCAAGTACACGACCAGGGAC 60.038 60.000 0.00 0.00 0.00 4.46
7533 8019 0.470456 ACCAAGTACACGACCAGGGA 60.470 55.000 0.00 0.00 0.00 4.20
7534 8020 0.395312 AACCAAGTACACGACCAGGG 59.605 55.000 0.00 0.00 0.00 4.45
7535 8021 1.792006 GAACCAAGTACACGACCAGG 58.208 55.000 0.00 0.00 0.00 4.45
7536 8022 1.415374 CGAACCAAGTACACGACCAG 58.585 55.000 0.00 0.00 0.00 4.00
7537 8023 0.032403 CCGAACCAAGTACACGACCA 59.968 55.000 0.00 0.00 0.00 4.02
7538 8024 0.032540 ACCGAACCAAGTACACGACC 59.967 55.000 0.00 0.00 0.00 4.79
7539 8025 1.134226 CACCGAACCAAGTACACGAC 58.866 55.000 0.00 0.00 0.00 4.34
7540 8026 1.031235 TCACCGAACCAAGTACACGA 58.969 50.000 0.00 0.00 0.00 4.35
7541 8027 2.074547 ATCACCGAACCAAGTACACG 57.925 50.000 0.00 0.00 0.00 4.49
7542 8028 2.095919 GCAATCACCGAACCAAGTACAC 60.096 50.000 0.00 0.00 0.00 2.90
7543 8029 2.147958 GCAATCACCGAACCAAGTACA 58.852 47.619 0.00 0.00 0.00 2.90
7544 8030 2.423577 AGCAATCACCGAACCAAGTAC 58.576 47.619 0.00 0.00 0.00 2.73
7545 8031 2.851263 AGCAATCACCGAACCAAGTA 57.149 45.000 0.00 0.00 0.00 2.24
7546 8032 1.981256 AAGCAATCACCGAACCAAGT 58.019 45.000 0.00 0.00 0.00 3.16
7547 8033 4.701956 ATAAAGCAATCACCGAACCAAG 57.298 40.909 0.00 0.00 0.00 3.61
7548 8034 9.562408 TTATATATAAAGCAATCACCGAACCAA 57.438 29.630 2.56 0.00 0.00 3.67
7549 8035 9.562408 TTTATATATAAAGCAATCACCGAACCA 57.438 29.630 12.90 0.00 0.00 3.67
7553 8039 9.478768 TCGTTTTATATATAAAGCAATCACCGA 57.521 29.630 23.58 15.53 34.42 4.69
7554 8040 9.741168 CTCGTTTTATATATAAAGCAATCACCG 57.259 33.333 23.58 14.20 34.42 4.94
7562 8048 9.513554 GCTTTCGTCTCGTTTTATATATAAAGC 57.486 33.333 17.54 17.54 37.73 3.51
7564 8050 9.754382 AGGCTTTCGTCTCGTTTTATATATAAA 57.246 29.630 12.90 12.90 0.00 1.40
7565 8051 9.188588 CAGGCTTTCGTCTCGTTTTATATATAA 57.811 33.333 0.81 0.81 0.00 0.98
7566 8052 8.355169 ACAGGCTTTCGTCTCGTTTTATATATA 58.645 33.333 0.00 0.00 0.00 0.86
7567 8053 7.208080 ACAGGCTTTCGTCTCGTTTTATATAT 58.792 34.615 0.00 0.00 0.00 0.86
7568 8054 6.567050 ACAGGCTTTCGTCTCGTTTTATATA 58.433 36.000 0.00 0.00 0.00 0.86
7569 8055 5.416947 ACAGGCTTTCGTCTCGTTTTATAT 58.583 37.500 0.00 0.00 0.00 0.86
7570 8056 4.813027 ACAGGCTTTCGTCTCGTTTTATA 58.187 39.130 0.00 0.00 0.00 0.98
7571 8057 3.660865 ACAGGCTTTCGTCTCGTTTTAT 58.339 40.909 0.00 0.00 0.00 1.40
7572 8058 3.102052 ACAGGCTTTCGTCTCGTTTTA 57.898 42.857 0.00 0.00 0.00 1.52
7573 8059 1.949465 ACAGGCTTTCGTCTCGTTTT 58.051 45.000 0.00 0.00 0.00 2.43
7574 8060 1.949465 AACAGGCTTTCGTCTCGTTT 58.051 45.000 0.00 0.00 0.00 3.60
7575 8061 1.865340 GAAACAGGCTTTCGTCTCGTT 59.135 47.619 0.00 0.00 0.00 3.85
7576 8062 1.499049 GAAACAGGCTTTCGTCTCGT 58.501 50.000 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.