Multiple sequence alignment - TraesCS3D01G118100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G118100 chr3D 100.000 5746 0 0 1744 7489 71759596 71765341 0.000000e+00 10611.0
1 TraesCS3D01G118100 chr3D 100.000 1333 0 0 1 1333 71757853 71759185 0.000000e+00 2462.0
2 TraesCS3D01G118100 chr3D 91.489 47 3 1 5582 5627 384864320 384864274 6.270000e-06 63.9
3 TraesCS3D01G118100 chr3B 91.885 1984 94 31 2223 4170 117721758 117723710 0.000000e+00 2710.0
4 TraesCS3D01G118100 chr3B 94.139 1382 39 12 5337 6704 117725055 117726408 0.000000e+00 2065.0
5 TraesCS3D01G118100 chr3B 89.384 1168 91 15 4180 5338 117723817 117724960 0.000000e+00 1439.0
6 TraesCS3D01G118100 chr3B 90.363 633 28 16 726 1333 117720633 117721257 0.000000e+00 800.0
7 TraesCS3D01G118100 chr3B 85.048 622 41 18 6696 7310 117731379 117731955 3.010000e-163 586.0
8 TraesCS3D01G118100 chr3B 91.253 423 23 3 1744 2153 117721345 117721766 1.410000e-156 564.0
9 TraesCS3D01G118100 chr3B 94.054 185 9 2 7307 7489 117732192 117732376 5.720000e-71 279.0
10 TraesCS3D01G118100 chr3A 91.315 1589 99 15 1744 3298 83977795 83979378 0.000000e+00 2134.0
11 TraesCS3D01G118100 chr3A 88.370 1178 82 30 3358 4501 83979522 83980678 0.000000e+00 1365.0
12 TraesCS3D01G118100 chr3A 89.345 779 60 18 17 775 83974682 83975457 0.000000e+00 957.0
13 TraesCS3D01G118100 chr3A 91.979 561 20 5 783 1324 83976846 83977400 0.000000e+00 763.0
14 TraesCS3D01G118100 chr3A 86.207 696 44 26 6217 6885 83982602 83983272 0.000000e+00 706.0
15 TraesCS3D01G118100 chr3A 90.135 517 26 14 5720 6218 83982011 83982520 0.000000e+00 649.0
16 TraesCS3D01G118100 chr3A 89.183 453 17 9 4499 4939 83980706 83981138 3.080000e-148 536.0
17 TraesCS3D01G118100 chr3A 79.775 178 15 10 517 673 721456460 721456283 7.940000e-20 110.0
18 TraesCS3D01G118100 chr3A 90.141 71 7 0 7216 7286 580031071 580031141 8.000000e-15 93.5
19 TraesCS3D01G118100 chr3A 89.041 73 7 1 5123 5195 583703572 583703501 1.030000e-13 89.8
20 TraesCS3D01G118100 chr5B 85.000 160 19 2 526 680 640152455 640152614 2.800000e-34 158.0
21 TraesCS3D01G118100 chr7A 81.977 172 30 1 5054 5224 62482529 62482700 2.180000e-30 145.0
22 TraesCS3D01G118100 chr7A 87.719 57 7 0 5567 5623 171555406 171555462 4.850000e-07 67.6
23 TraesCS3D01G118100 chr7A 100.000 32 0 0 6166 6197 14188961 14188992 8.110000e-05 60.2
24 TraesCS3D01G118100 chr4D 84.746 118 16 2 5054 5170 505988451 505988567 4.750000e-22 117.0
25 TraesCS3D01G118100 chr4B 83.333 120 16 4 5054 5171 661679522 661679639 2.860000e-19 108.0
26 TraesCS3D01G118100 chr4B 92.857 42 3 0 5582 5623 183611688 183611729 2.260000e-05 62.1
27 TraesCS3D01G118100 chr5A 82.353 119 19 2 5054 5171 702137151 702137268 1.330000e-17 102.0
28 TraesCS3D01G118100 chr2D 78.571 182 19 11 515 676 438256470 438256289 1.330000e-17 102.0
29 TraesCS3D01G118100 chr2D 92.857 42 1 2 345 385 378738808 378738768 8.110000e-05 60.2
30 TraesCS3D01G118100 chr7D 87.209 86 10 1 5110 5195 230490961 230490877 6.190000e-16 97.1
31 TraesCS3D01G118100 chr7D 88.312 77 9 0 5112 5188 279743710 279743786 8.000000e-15 93.5
32 TraesCS3D01G118100 chr7D 86.792 53 7 0 283 335 35245103 35245051 8.110000e-05 60.2
33 TraesCS3D01G118100 chrUn 84.884 86 13 0 5110 5195 31301260 31301175 3.720000e-13 87.9
34 TraesCS3D01G118100 chrUn 87.719 57 7 0 5567 5623 82713349 82713405 4.850000e-07 67.6
35 TraesCS3D01G118100 chr2B 76.923 182 22 11 515 676 515923716 515923535 1.340000e-12 86.1
36 TraesCS3D01G118100 chr2B 92.000 50 3 1 628 676 317028727 317028678 1.350000e-07 69.4
37 TraesCS3D01G118100 chr1A 95.918 49 2 0 1970 2018 540287031 540286983 6.230000e-11 80.5
38 TraesCS3D01G118100 chr1A 92.308 52 4 0 1967 2018 540191631 540191682 2.900000e-09 75.0
39 TraesCS3D01G118100 chr1D 92.308 52 4 0 1967 2018 444892433 444892484 2.900000e-09 75.0
40 TraesCS3D01G118100 chr1D 93.878 49 3 0 1970 2018 445040141 445040093 2.900000e-09 75.0
41 TraesCS3D01G118100 chr1B 87.500 64 8 0 1955 2018 605433225 605433288 2.900000e-09 75.0
42 TraesCS3D01G118100 chr1B 87.692 65 6 2 1970 2033 605584148 605584085 2.900000e-09 75.0
43 TraesCS3D01G118100 chr6B 92.000 50 3 1 628 676 197747644 197747693 1.350000e-07 69.4
44 TraesCS3D01G118100 chr6B 92.000 50 3 1 628 676 332408102 332408053 1.350000e-07 69.4
45 TraesCS3D01G118100 chr5D 90.566 53 4 1 628 679 206092890 206092838 1.350000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G118100 chr3D 71757853 71765341 7488 False 6536.500000 10611 100.000000 1 7489 2 chr3D.!!$F1 7488
1 TraesCS3D01G118100 chr3B 117720633 117726408 5775 False 1515.600000 2710 91.404800 726 6704 5 chr3B.!!$F1 5978
2 TraesCS3D01G118100 chr3B 117731379 117732376 997 False 432.500000 586 89.551000 6696 7489 2 chr3B.!!$F2 793
3 TraesCS3D01G118100 chr3A 83974682 83983272 8590 False 1015.714286 2134 89.504857 17 6885 7 chr3A.!!$F2 6868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 0.036306 AAGATTTGGCGGTTCGGTCT 59.964 50.000 0.00 0.0 0.00 3.85 F
777 795 0.110238 CGTGCCACCAAGATCAAACG 60.110 55.000 0.00 0.0 0.00 3.60 F
922 2342 0.749454 GCCCTAAGTCCCTACGACGA 60.749 60.000 0.00 0.0 46.92 4.20 F
1839 3602 1.287815 GTCACATGGGTCGTCGTCA 59.712 57.895 0.00 0.0 0.00 4.35 F
2084 3850 0.840103 CTCGACGTGACGCACATATG 59.160 55.000 4.25 0.0 33.40 1.78 F
3157 4976 2.504367 AGGACCTCATGTTTGGTTTCG 58.496 47.619 8.64 0.0 36.59 3.46 F
3838 5792 0.038251 TAGCTCGTGTTCCACTGCTG 60.038 55.000 16.40 0.0 40.10 4.41 F
4648 6740 0.041663 ATACGTGCGTGTTTGTGTGC 60.042 50.000 7.55 0.0 0.00 4.57 F
4694 6790 0.321346 ACCAGTCGATGCATGTGTGA 59.679 50.000 2.46 0.0 0.00 3.58 F
5538 7986 0.247736 ACGTTGATCAGACAGCTCCC 59.752 55.000 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1968 3731 1.287815 CCACTTGTAGCCGTCGTCA 59.712 57.895 0.00 0.00 0.00 4.35 R
2060 3826 2.804090 GCGTCACGTCGAGGGTTC 60.804 66.667 10.27 0.00 0.00 3.62 R
2084 3850 3.433274 ACATGCACATATGTAGCGTATGC 59.567 43.478 18.43 12.69 39.40 3.14 R
3838 5792 0.034670 ATTGGCTCTCTGTTCCCTGC 60.035 55.000 0.00 0.00 0.00 4.85 R
3839 5793 2.026449 AGAATTGGCTCTCTGTTCCCTG 60.026 50.000 0.00 0.00 0.00 4.45 R
4694 6790 0.035152 ACCACCACACATGCATCGAT 60.035 50.000 0.00 0.00 0.00 3.59 R
5130 7481 0.311790 ACGCGAGGACGACAAGTTTA 59.688 50.000 15.93 0.00 42.66 2.01 R
5518 7966 1.354040 GGAGCTGTCTGATCAACGTG 58.646 55.000 0.00 0.00 31.67 4.49 R
5602 8050 2.721425 ACTTCCTTCGTCCCAAAACA 57.279 45.000 0.00 0.00 0.00 2.83 R
7259 10241 0.475044 TGATGCTGGCATGCCATCTA 59.525 50.000 38.47 26.41 46.15 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.491675 GGACCTCCCGAGTTTTCAAT 57.508 50.000 0.00 0.00 0.00 2.57
21 22 3.622166 GGACCTCCCGAGTTTTCAATA 57.378 47.619 0.00 0.00 0.00 1.90
22 23 3.532542 GGACCTCCCGAGTTTTCAATAG 58.467 50.000 0.00 0.00 0.00 1.73
28 29 3.938963 TCCCGAGTTTTCAATAGCATCAC 59.061 43.478 0.00 0.00 0.00 3.06
33 34 3.440173 AGTTTTCAATAGCATCACCACCG 59.560 43.478 0.00 0.00 0.00 4.94
54 55 3.301642 CGTACCTTCGACCATCGTTAAAC 59.698 47.826 0.00 0.00 41.35 2.01
74 75 6.787085 AAACTTCGAGTTTGATCCTTAGTG 57.213 37.500 10.79 0.00 45.83 2.74
109 110 6.819397 AAAGATACAAGTGCCTCCTTAAAC 57.181 37.500 0.00 0.00 0.00 2.01
142 143 3.073274 AGCCTATGACAAGGGTGAAAC 57.927 47.619 7.35 0.00 45.57 2.78
145 146 3.559171 GCCTATGACAAGGGTGAAACTCA 60.559 47.826 6.01 0.00 42.69 3.41
186 187 8.732746 ACACTAGAGTTCAATGTAACTTTTGT 57.267 30.769 0.00 0.00 39.78 2.83
225 226 7.559590 ACATGTATTTCAAATAGGCACTCTC 57.440 36.000 0.00 0.00 41.75 3.20
239 240 2.029649 GCACTCTCCATGCAAATTGTGT 60.030 45.455 0.00 0.00 42.88 3.72
269 270 6.914665 TGATGATTAGATTCCTTTGGATGGT 58.085 36.000 0.00 0.00 0.00 3.55
289 290 0.106217 ACCAACCCACCCAGTTCAAG 60.106 55.000 0.00 0.00 0.00 3.02
290 291 0.106217 CCAACCCACCCAGTTCAAGT 60.106 55.000 0.00 0.00 0.00 3.16
302 303 6.595716 CACCCAGTTCAAGTCCTAGATTTAAG 59.404 42.308 0.00 0.00 0.00 1.85
305 306 7.386851 CCAGTTCAAGTCCTAGATTTAAGACA 58.613 38.462 0.00 0.00 0.00 3.41
307 308 8.307483 CAGTTCAAGTCCTAGATTTAAGACAGA 58.693 37.037 0.00 0.00 0.00 3.41
335 336 7.111247 TCGCATTTTCCTGAATTTATTCCAT 57.889 32.000 0.32 0.00 35.97 3.41
336 337 7.555087 TCGCATTTTCCTGAATTTATTCCATT 58.445 30.769 0.32 0.00 35.97 3.16
359 360 4.338118 TCTTTTCGGCAACTTTGTCAATCT 59.662 37.500 0.00 0.00 31.86 2.40
375 376 3.440173 TCAATCTCAAGATTTGGCGGTTC 59.560 43.478 2.47 0.00 42.41 3.62
376 377 1.438651 TCTCAAGATTTGGCGGTTCG 58.561 50.000 0.00 0.00 0.00 3.95
378 379 0.250553 TCAAGATTTGGCGGTTCGGT 60.251 50.000 0.00 0.00 0.00 4.69
379 380 0.168128 CAAGATTTGGCGGTTCGGTC 59.832 55.000 0.00 0.00 0.00 4.79
380 381 0.036306 AAGATTTGGCGGTTCGGTCT 59.964 50.000 0.00 0.00 0.00 3.85
382 383 2.253414 GATTTGGCGGTTCGGTCTGC 62.253 60.000 3.60 3.60 38.81 4.26
383 384 2.748058 ATTTGGCGGTTCGGTCTGCT 62.748 55.000 10.34 0.00 39.41 4.24
384 385 3.876589 TTGGCGGTTCGGTCTGCTC 62.877 63.158 10.34 3.56 39.41 4.26
386 387 4.719369 GCGGTTCGGTCTGCTCGT 62.719 66.667 4.74 0.00 36.83 4.18
387 388 2.504244 CGGTTCGGTCTGCTCGTC 60.504 66.667 0.00 0.00 0.00 4.20
411 417 1.451651 GCGTTTCAAAATGAACAGGCG 59.548 47.619 0.00 0.00 35.89 5.52
415 421 1.896220 TCAAAATGAACAGGCGCTCT 58.104 45.000 7.64 0.00 0.00 4.09
431 437 3.643763 CGCTCTCAATACATGGTAGTCC 58.356 50.000 0.00 0.00 0.00 3.85
461 467 4.433186 TGTAAACATAATTGCGCTTGCT 57.567 36.364 9.73 0.00 40.12 3.91
483 489 9.862371 TTGCTATGTTTTTGTTGAGAGTAAAAA 57.138 25.926 0.00 0.00 32.64 1.94
498 504 8.145767 TGAGAGTAAAAATAAACGAGAACAGGA 58.854 33.333 0.00 0.00 0.00 3.86
533 542 6.037610 GCGGTTTCTCTCTTTATTGATGATGT 59.962 38.462 0.00 0.00 0.00 3.06
535 544 9.098355 CGGTTTCTCTCTTTATTGATGATGTTA 57.902 33.333 0.00 0.00 0.00 2.41
559 573 1.873698 TTGTTACAAGGGACACGAGC 58.126 50.000 0.00 0.00 0.00 5.03
568 582 1.070786 GGACACGAGCAAAGGGTCA 59.929 57.895 9.98 0.00 43.44 4.02
570 584 1.066430 GGACACGAGCAAAGGGTCATA 60.066 52.381 9.98 0.00 43.44 2.15
572 586 3.181469 GGACACGAGCAAAGGGTCATATA 60.181 47.826 9.98 0.00 43.44 0.86
573 587 4.051922 GACACGAGCAAAGGGTCATATAG 58.948 47.826 4.01 0.00 41.42 1.31
596 610 0.387565 GGAGAAGGGATGCGTCTCTC 59.612 60.000 9.25 11.53 32.69 3.20
599 613 1.668101 GAAGGGATGCGTCTCTCCGT 61.668 60.000 9.25 0.00 32.69 4.69
616 630 2.292569 TCCGTAGAGATAACCGCATGAC 59.707 50.000 0.00 0.00 0.00 3.06
617 631 2.034179 CCGTAGAGATAACCGCATGACA 59.966 50.000 0.00 0.00 0.00 3.58
618 632 3.300857 CGTAGAGATAACCGCATGACAG 58.699 50.000 0.00 0.00 0.00 3.51
627 641 1.806542 ACCGCATGACAGTTGCTAAAG 59.193 47.619 0.00 0.00 37.96 1.85
628 642 2.076100 CCGCATGACAGTTGCTAAAGA 58.924 47.619 0.00 0.00 37.96 2.52
629 643 2.159653 CCGCATGACAGTTGCTAAAGAC 60.160 50.000 0.00 0.00 37.96 3.01
630 644 2.159653 CGCATGACAGTTGCTAAAGACC 60.160 50.000 0.00 0.00 37.96 3.85
632 646 2.902705 TGACAGTTGCTAAAGACCGT 57.097 45.000 0.00 0.00 0.00 4.83
633 647 3.188159 TGACAGTTGCTAAAGACCGTT 57.812 42.857 0.00 0.00 0.00 4.44
634 648 3.128349 TGACAGTTGCTAAAGACCGTTC 58.872 45.455 0.00 0.00 0.00 3.95
635 649 2.479275 GACAGTTGCTAAAGACCGTTCC 59.521 50.000 0.00 0.00 0.00 3.62
653 671 7.736893 ACCGTTCCTAATTAAGCAGAGATTAT 58.263 34.615 0.00 0.00 0.00 1.28
713 731 2.450476 CTTAGCCACCAGAATTGCCTT 58.550 47.619 0.00 0.00 0.00 4.35
719 737 3.094572 CCACCAGAATTGCCTTGAGATT 58.905 45.455 0.00 0.00 0.00 2.40
745 763 8.034215 TCACATTTTTCAATCATCATGGGTAAC 58.966 33.333 0.00 0.00 0.00 2.50
777 795 0.110238 CGTGCCACCAAGATCAAACG 60.110 55.000 0.00 0.00 0.00 3.60
920 2340 1.732417 CGGCCCTAAGTCCCTACGAC 61.732 65.000 0.00 0.00 42.32 4.34
921 2341 1.732308 GCCCTAAGTCCCTACGACG 59.268 63.158 0.00 0.00 46.92 5.12
922 2342 0.749454 GCCCTAAGTCCCTACGACGA 60.749 60.000 0.00 0.00 46.92 4.20
934 2354 5.180868 GTCCCTACGACGACATCAGTATATT 59.819 44.000 0.00 0.00 0.00 1.28
1837 3600 2.654877 GGTCACATGGGTCGTCGT 59.345 61.111 0.00 0.00 0.00 4.34
1839 3602 1.287815 GTCACATGGGTCGTCGTCA 59.712 57.895 0.00 0.00 0.00 4.35
2055 3821 3.172050 CGCACTGTACATCGATATAGCC 58.828 50.000 0.00 0.00 0.00 3.93
2060 3826 3.014623 TGTACATCGATATAGCCCCTCG 58.985 50.000 0.00 0.00 0.00 4.63
2084 3850 0.840103 CTCGACGTGACGCACATATG 59.160 55.000 4.25 0.00 33.40 1.78
2261 4039 6.758886 TGTTTTTGATGTCCAATTTGGTGTAC 59.241 34.615 14.98 7.02 39.03 2.90
2262 4040 5.461032 TTTGATGTCCAATTTGGTGTACC 57.539 39.130 14.98 0.00 39.03 3.34
2295 4073 7.657761 CAGAAGTGACAACTTGACTAATTAGGT 59.342 37.037 16.73 3.00 46.84 3.08
2596 4387 5.587388 AATCTCCATACAGCACATTTTGG 57.413 39.130 0.00 0.00 0.00 3.28
2605 4396 4.831107 ACAGCACATTTTGGAACTGTTTT 58.169 34.783 0.00 0.00 34.89 2.43
2652 4443 8.995220 GTTAATGTATTATTACATCGAAGGGCA 58.005 33.333 10.00 0.00 46.10 5.36
2798 4593 4.023291 GGCTTTCTTCATGGGTAATTCCA 58.977 43.478 0.00 0.00 41.60 3.53
2918 4729 8.506168 TGGGTATCTTGAAGCAATAACTAAAG 57.494 34.615 0.00 0.00 0.00 1.85
2991 4808 7.875327 TTGAATACTTCATTAGTTAAGGCCC 57.125 36.000 0.00 0.00 39.84 5.80
2993 4810 6.159751 TGAATACTTCATTAGTTAAGGCCCCT 59.840 38.462 0.00 0.00 38.33 4.79
3087 4905 4.445385 GCAAAACTGTTATTTGGCTGTCAG 59.555 41.667 6.98 0.00 35.87 3.51
3102 4920 4.641989 GGCTGTCAGGTATGAAAATCACAT 59.358 41.667 1.14 0.00 37.14 3.21
3105 4923 7.189512 GCTGTCAGGTATGAAAATCACATAAC 58.810 38.462 1.14 0.00 37.14 1.89
3157 4976 2.504367 AGGACCTCATGTTTGGTTTCG 58.496 47.619 8.64 0.00 36.59 3.46
3172 4992 3.447586 TGGTTTCGTCCAAAATTTCCACA 59.552 39.130 0.00 0.00 34.24 4.17
3233 5053 6.441604 AGGATAGCAATTCCTTTGTTCCAAAT 59.558 34.615 0.00 0.00 40.84 2.32
3341 5216 5.574443 GCTTTGAGAGGCATACAAAATGTTC 59.426 40.000 5.12 0.00 34.03 3.18
3476 5388 4.938226 GTCATGGTGTTCTAGAAGGGAAAG 59.062 45.833 5.12 0.00 0.00 2.62
3478 5390 2.708861 TGGTGTTCTAGAAGGGAAAGCA 59.291 45.455 5.12 3.03 0.00 3.91
3486 5398 8.325787 TGTTCTAGAAGGGAAAGCATATAAACA 58.674 33.333 5.12 0.00 0.00 2.83
3622 5534 4.974399 AGGCTTATGTTATCTTGGCCTAC 58.026 43.478 3.32 0.00 45.32 3.18
3698 5611 8.474831 AGTTGGCATAAGTTATAAAATTGTCCC 58.525 33.333 0.00 0.00 0.00 4.46
3724 5637 3.193267 GCAGAACTTTATGGCATTCACCA 59.807 43.478 4.78 0.00 45.82 4.17
3799 5753 6.238429 GCTAAGAGATTCTGGCATGAAGAAAG 60.238 42.308 13.37 7.83 37.22 2.62
3838 5792 0.038251 TAGCTCGTGTTCCACTGCTG 60.038 55.000 16.40 0.00 40.10 4.41
3839 5793 2.959357 GCTCGTGTTCCACTGCTGC 61.959 63.158 0.00 0.00 32.20 5.25
3840 5794 1.595109 CTCGTGTTCCACTGCTGCA 60.595 57.895 0.88 0.88 31.34 4.41
3843 5799 2.113774 TGTTCCACTGCTGCAGGG 59.886 61.111 31.00 28.04 35.51 4.45
3845 5801 1.228245 GTTCCACTGCTGCAGGGAA 60.228 57.895 31.33 31.33 36.97 3.97
3889 5848 4.049186 ACTTTTGTGCACTCGTACAGTAG 58.951 43.478 19.41 5.08 39.05 2.57
4009 5969 2.632996 CCCCTTGTTGTCTCTCTACACA 59.367 50.000 0.00 0.00 32.22 3.72
4010 5970 3.555168 CCCCTTGTTGTCTCTCTACACAC 60.555 52.174 0.00 0.00 32.22 3.82
4039 5999 9.082313 CCTAAATTGAACCCTAAATGCATATCT 57.918 33.333 0.00 0.00 0.00 1.98
4121 6081 5.410132 CCATACACAAAGGTACGAAACATGA 59.590 40.000 0.00 0.00 0.00 3.07
4127 6087 6.370442 CACAAAGGTACGAAACATGATCCTAA 59.630 38.462 0.00 0.00 0.00 2.69
4128 6088 6.594159 ACAAAGGTACGAAACATGATCCTAAG 59.406 38.462 0.00 0.00 0.00 2.18
4137 6098 6.093495 CGAAACATGATCCTAAGCCTTTGTTA 59.907 38.462 0.00 0.00 0.00 2.41
4138 6099 7.201732 CGAAACATGATCCTAAGCCTTTGTTAT 60.202 37.037 0.00 0.00 0.00 1.89
4155 6116 6.870971 TTGTTATTTTTCTAGGTCGTGCTT 57.129 33.333 0.00 0.00 0.00 3.91
4159 6120 1.795768 TTTCTAGGTCGTGCTTGCTG 58.204 50.000 0.00 0.00 0.00 4.41
4166 6127 2.076863 GGTCGTGCTTGCTGTTCTAAT 58.923 47.619 0.00 0.00 0.00 1.73
4170 6131 4.625742 GTCGTGCTTGCTGTTCTAATCTAA 59.374 41.667 0.00 0.00 0.00 2.10
4172 6133 5.520288 TCGTGCTTGCTGTTCTAATCTAATC 59.480 40.000 0.00 0.00 0.00 1.75
4173 6134 5.521735 CGTGCTTGCTGTTCTAATCTAATCT 59.478 40.000 0.00 0.00 0.00 2.40
4174 6135 6.697455 CGTGCTTGCTGTTCTAATCTAATCTA 59.303 38.462 0.00 0.00 0.00 1.98
4175 6136 7.096271 CGTGCTTGCTGTTCTAATCTAATCTAG 60.096 40.741 0.00 0.00 0.00 2.43
4176 6137 7.708752 GTGCTTGCTGTTCTAATCTAATCTAGT 59.291 37.037 0.00 0.00 0.00 2.57
4177 6138 7.708322 TGCTTGCTGTTCTAATCTAATCTAGTG 59.292 37.037 0.00 0.00 0.00 2.74
4178 6139 7.923344 GCTTGCTGTTCTAATCTAATCTAGTGA 59.077 37.037 0.00 0.00 0.00 3.41
4201 6259 8.133627 GTGATAGCTCTTTATTTGCATGTCATT 58.866 33.333 0.00 0.00 0.00 2.57
4211 6269 5.999205 TTTGCATGTCATTTGGATTAGGT 57.001 34.783 0.00 0.00 0.00 3.08
4218 6276 5.439721 TGTCATTTGGATTAGGTCAGATGG 58.560 41.667 0.00 0.00 0.00 3.51
4225 6283 5.784023 TGGATTAGGTCAGATGGTAACCTA 58.216 41.667 0.00 0.00 43.18 3.08
4255 6313 7.656948 TGTTCTTTGCTTAATTTCTTTGATGGG 59.343 33.333 0.00 0.00 0.00 4.00
4267 6325 4.934356 TCTTTGATGGGCTAGTCCATTTT 58.066 39.130 29.17 9.22 46.67 1.82
4279 6337 4.396357 AGTCCATTTTATGTTGTGGGGA 57.604 40.909 0.00 0.00 32.58 4.81
4422 6480 4.326009 GCCATCGCGACAAACAAAATAAAT 59.674 37.500 12.93 0.00 0.00 1.40
4482 6540 6.998673 AGCTAGAAGAAAAGGTTACATGTTGT 59.001 34.615 2.30 0.00 0.00 3.32
4503 6591 9.739276 TGTTGTTACTCTGAATAAGATTTCCAT 57.261 29.630 0.00 0.00 33.29 3.41
4538 6626 7.462571 AAACTAGCCACCTTAATTTTGTAGG 57.537 36.000 0.00 0.00 35.14 3.18
4560 6648 4.638865 GGTGCAATTAACCACCTTACTAGG 59.361 45.833 12.26 0.00 46.23 3.02
4619 6711 6.659668 CCAATATATCTCCTCTCGGTGTCTAA 59.340 42.308 0.00 0.00 0.00 2.10
4647 6739 2.473609 ACTATACGTGCGTGTTTGTGTG 59.526 45.455 7.55 0.00 0.00 3.82
4648 6740 0.041663 ATACGTGCGTGTTTGTGTGC 60.042 50.000 7.55 0.00 0.00 4.57
4692 6788 3.143675 GACCAGTCGATGCATGTGT 57.856 52.632 2.46 0.00 0.00 3.72
4693 6789 0.723414 GACCAGTCGATGCATGTGTG 59.277 55.000 2.46 0.00 0.00 3.82
4694 6790 0.321346 ACCAGTCGATGCATGTGTGA 59.679 50.000 2.46 0.00 0.00 3.58
4695 6791 1.065926 ACCAGTCGATGCATGTGTGAT 60.066 47.619 2.46 0.00 0.00 3.06
4696 6792 1.596260 CCAGTCGATGCATGTGTGATC 59.404 52.381 2.46 0.00 0.00 2.92
4697 6793 1.257155 CAGTCGATGCATGTGTGATCG 59.743 52.381 2.46 0.00 37.05 3.69
4838 6957 1.386155 CCAACCCAACCCTATGGCA 59.614 57.895 0.00 0.00 39.26 4.92
5037 7388 4.737054 TGTCGATAAGTTAAGTCCCGAAC 58.263 43.478 0.00 0.00 0.00 3.95
5060 7411 2.917933 TCGGGATTTGACTATGGCAAG 58.082 47.619 0.00 0.00 0.00 4.01
5078 7429 2.557924 CAAGTTTAGTTGGCAGCCATGA 59.442 45.455 17.09 0.00 31.53 3.07
5089 7440 1.729284 CAGCCATGACAAATTTGCCC 58.271 50.000 18.12 10.66 0.00 5.36
5092 7443 2.372837 AGCCATGACAAATTTGCCCTTT 59.627 40.909 18.12 0.00 0.00 3.11
5102 7453 8.743714 TGACAAATTTGCCCTTTGTTTAATTTT 58.256 25.926 18.12 0.00 44.56 1.82
5125 7476 2.721090 GTCAGAAAATTGACGTGCTTGC 59.279 45.455 0.00 0.00 38.23 4.01
5126 7477 2.053627 CAGAAAATTGACGTGCTTGCC 58.946 47.619 0.00 0.00 0.00 4.52
5127 7478 1.680735 AGAAAATTGACGTGCTTGCCA 59.319 42.857 0.00 0.00 0.00 4.92
5128 7479 2.100584 AGAAAATTGACGTGCTTGCCAA 59.899 40.909 0.00 0.00 0.00 4.52
5129 7480 1.851658 AAATTGACGTGCTTGCCAAC 58.148 45.000 0.00 0.00 0.00 3.77
5130 7481 1.032014 AATTGACGTGCTTGCCAACT 58.968 45.000 0.00 0.00 0.00 3.16
5131 7482 1.890876 ATTGACGTGCTTGCCAACTA 58.109 45.000 0.00 0.00 0.00 2.24
5132 7483 1.669604 TTGACGTGCTTGCCAACTAA 58.330 45.000 0.00 0.00 0.00 2.24
5133 7484 1.669604 TGACGTGCTTGCCAACTAAA 58.330 45.000 0.00 0.00 0.00 1.85
5134 7485 1.332375 TGACGTGCTTGCCAACTAAAC 59.668 47.619 0.00 0.00 0.00 2.01
5140 7491 2.032799 TGCTTGCCAACTAAACTTGTCG 59.967 45.455 0.00 0.00 0.00 4.35
5148 7499 0.982673 CTAAACTTGTCGTCCTCGCG 59.017 55.000 0.00 0.00 36.96 5.87
5188 7539 4.582701 AAAAGTGTTCGATTTGCCATGA 57.417 36.364 0.00 0.00 0.00 3.07
5210 7561 4.413495 TCAAAAATTTGACGTCCGGATC 57.587 40.909 14.12 1.89 41.88 3.36
5242 7594 8.980143 TTCCGGAAAATAAACAGATGATTTTC 57.020 30.769 16.28 9.70 43.83 2.29
5249 7601 8.792830 AAATAAACAGATGATTTTCGGAGAGA 57.207 30.769 0.00 0.00 38.43 3.10
5272 7624 3.726291 AAAAACAGGACCATCAAACCG 57.274 42.857 0.00 0.00 0.00 4.44
5274 7626 2.879103 AACAGGACCATCAAACCGAT 57.121 45.000 0.00 0.00 33.27 4.18
5276 7628 1.909302 ACAGGACCATCAAACCGATCT 59.091 47.619 0.00 0.00 29.21 2.75
5298 7650 3.501828 TGATACACGATATGGCAAATGGC 59.498 43.478 0.00 0.00 43.74 4.40
5304 7656 1.409790 GATATGGCAAATGGCTGTGCA 59.590 47.619 8.50 0.00 42.74 4.57
5318 7670 6.677781 TGGCTGTGCATTAGTATTAGTTTC 57.322 37.500 0.00 0.00 0.00 2.78
5338 7690 5.897377 TTCTTTAAGGGAAGTGCATTAGC 57.103 39.130 0.00 0.00 42.57 3.09
5397 7845 3.157087 GGAGCAACCAAGATCCTGAAAA 58.843 45.455 0.00 0.00 40.85 2.29
5398 7846 3.573967 GGAGCAACCAAGATCCTGAAAAA 59.426 43.478 0.00 0.00 40.85 1.94
5439 7887 3.189287 GCAAGCCACCATGCTATATGTAC 59.811 47.826 0.00 0.00 41.80 2.90
5458 7906 1.376812 CAGTAAACCACCCGGAGCC 60.377 63.158 0.73 0.00 35.59 4.70
5518 7966 5.339008 AAGAAGTTTCACCCTTGGTTTTC 57.661 39.130 0.00 0.00 31.02 2.29
5538 7986 0.247736 ACGTTGATCAGACAGCTCCC 59.752 55.000 0.00 0.00 0.00 4.30
5622 8070 3.842007 TGTTTTGGGACGAAGGAAGTA 57.158 42.857 0.00 0.00 0.00 2.24
5670 8118 1.109920 CCACGATCGATCTGACCCCT 61.110 60.000 24.34 0.00 0.00 4.79
5734 8580 6.747659 ATTTTGTGTTTCTGCGTGTTAATC 57.252 33.333 0.00 0.00 0.00 1.75
5996 8848 6.779049 CCTGGAATTTTTATCATCTCCATCCA 59.221 38.462 0.00 0.00 32.70 3.41
5999 8851 7.175467 TGGAATTTTTATCATCTCCATCCATCG 59.825 37.037 0.00 0.00 0.00 3.84
6000 8852 7.362401 GGAATTTTTATCATCTCCATCCATCGG 60.362 40.741 0.00 0.00 0.00 4.18
6167 9025 2.417933 GCTTGTGATGTGCTACCTCTTG 59.582 50.000 0.00 0.00 0.00 3.02
6176 9040 1.630369 TGCTACCTCTTGAACTGCCAT 59.370 47.619 0.00 0.00 0.00 4.40
6192 9056 9.602568 TGAACTGCCATAACGTCTTATATTTAA 57.397 29.630 0.00 0.00 0.00 1.52
6254 9205 1.003545 CATGGCGAGCCTAACGATTTG 60.004 52.381 15.75 0.00 36.94 2.32
6280 9231 6.723131 AAGAAATGGCGTAGTAGAAAACTC 57.277 37.500 0.00 0.00 39.80 3.01
6494 9445 1.012841 GCTTCATCTGGTAGCAGCAC 58.987 55.000 17.20 0.00 35.05 4.40
6553 9504 3.931247 CCACCCACCCACGAACGA 61.931 66.667 0.14 0.00 0.00 3.85
6554 9505 2.109387 CACCCACCCACGAACGAA 59.891 61.111 0.14 0.00 0.00 3.85
6557 9508 3.708734 CCACCCACGAACGAACGC 61.709 66.667 0.14 0.00 36.70 4.84
6705 9659 4.044426 GCGGGAATAAAGACGTACGTTAT 58.956 43.478 23.70 13.48 35.38 1.89
6798 9774 3.084786 CCTGGGATCTGGTGAAGAAAAC 58.915 50.000 0.00 0.00 38.79 2.43
6856 9835 2.420022 GTGTCTGTCTTTTGTGTGTGCT 59.580 45.455 0.00 0.00 0.00 4.40
6886 9867 0.394352 CCATGGTGTAGGTTCCTGGC 60.394 60.000 2.57 0.00 0.00 4.85
6909 9890 2.027285 TCCTGCTGAAATCATTGTCGGA 60.027 45.455 0.00 0.00 0.00 4.55
6910 9891 2.749076 CCTGCTGAAATCATTGTCGGAA 59.251 45.455 0.00 0.00 0.00 4.30
6916 9897 4.651778 TGAAATCATTGTCGGAAGAGGTT 58.348 39.130 0.00 0.00 43.49 3.50
6949 9931 7.182026 TCCTAGATTCTTGTGGGTTCTGAATTA 59.818 37.037 0.00 0.00 0.00 1.40
6952 9934 7.234355 AGATTCTTGTGGGTTCTGAATTACTT 58.766 34.615 0.00 0.00 0.00 2.24
6953 9935 8.383175 AGATTCTTGTGGGTTCTGAATTACTTA 58.617 33.333 0.00 0.00 0.00 2.24
7021 10003 1.112916 AGGCCCAAGTTCCAAAACCG 61.113 55.000 0.00 0.00 35.92 4.44
7034 10016 2.164624 CCAAAACCGACACCAACTTTGA 59.835 45.455 0.00 0.00 0.00 2.69
7036 10018 1.021968 AACCGACACCAACTTTGAGC 58.978 50.000 0.00 0.00 0.00 4.26
7041 10023 1.668751 GACACCAACTTTGAGCAACGA 59.331 47.619 0.00 0.00 0.00 3.85
7042 10024 1.670811 ACACCAACTTTGAGCAACGAG 59.329 47.619 0.00 0.00 0.00 4.18
7043 10025 0.663153 ACCAACTTTGAGCAACGAGC 59.337 50.000 0.00 0.00 46.19 5.03
7076 10058 6.259550 AGCTCACTTACATGACAATTTTCC 57.740 37.500 0.00 0.00 0.00 3.13
7079 10061 6.294731 GCTCACTTACATGACAATTTTCCCTT 60.295 38.462 0.00 0.00 0.00 3.95
7084 10066 4.959723 ACATGACAATTTTCCCTTTGTGG 58.040 39.130 0.00 0.00 36.25 4.17
7087 10069 5.212532 TGACAATTTTCCCTTTGTGGATG 57.787 39.130 0.00 0.00 36.25 3.51
7089 10071 5.010922 TGACAATTTTCCCTTTGTGGATGAG 59.989 40.000 0.00 0.00 36.25 2.90
7099 10081 8.101309 TCCCTTTGTGGATGAGAAAGATATAA 57.899 34.615 0.00 0.00 37.15 0.98
7136 10118 5.940192 CTCTCACGCAAGAGTCTATCTAT 57.060 43.478 0.00 0.00 37.23 1.98
7144 10126 5.277393 CGCAAGAGTCTATCTATACGTGTGT 60.277 44.000 0.00 0.00 37.23 3.72
7176 10158 9.257651 GGCAGATACAATAAATACGTAGAAAGT 57.742 33.333 0.08 0.00 0.00 2.66
7187 10169 8.882415 AAATACGTAGAAAGTGACAAAGAGAA 57.118 30.769 0.08 0.00 0.00 2.87
7188 10170 8.522178 AATACGTAGAAAGTGACAAAGAGAAG 57.478 34.615 0.08 0.00 0.00 2.85
7189 10171 5.290386 ACGTAGAAAGTGACAAAGAGAAGG 58.710 41.667 0.00 0.00 0.00 3.46
7190 10172 5.163437 ACGTAGAAAGTGACAAAGAGAAGGT 60.163 40.000 0.00 0.00 0.00 3.50
7191 10173 5.175856 CGTAGAAAGTGACAAAGAGAAGGTG 59.824 44.000 0.00 0.00 0.00 4.00
7192 10174 4.455606 AGAAAGTGACAAAGAGAAGGTGG 58.544 43.478 0.00 0.00 0.00 4.61
7193 10175 4.164221 AGAAAGTGACAAAGAGAAGGTGGA 59.836 41.667 0.00 0.00 0.00 4.02
7194 10176 4.503714 AAGTGACAAAGAGAAGGTGGAA 57.496 40.909 0.00 0.00 0.00 3.53
7195 10177 4.503714 AGTGACAAAGAGAAGGTGGAAA 57.496 40.909 0.00 0.00 0.00 3.13
7196 10178 4.855340 AGTGACAAAGAGAAGGTGGAAAA 58.145 39.130 0.00 0.00 0.00 2.29
7197 10179 5.261216 AGTGACAAAGAGAAGGTGGAAAAA 58.739 37.500 0.00 0.00 0.00 1.94
7243 10225 5.821204 AGCAAACTTTGTTGTATGAGTGAC 58.179 37.500 3.48 0.00 0.00 3.67
7259 10241 7.609097 ATGAGTGACCATAAGTGATGACTAT 57.391 36.000 0.00 0.00 37.82 2.12
7271 10253 3.937706 GTGATGACTATAGATGGCATGCC 59.062 47.826 30.54 30.54 0.00 4.40
7293 10275 3.436015 CAGCATCATATAGCCAGCAGTTC 59.564 47.826 0.00 0.00 0.00 3.01
7300 10282 5.522460 TCATATAGCCAGCAGTTCGTTTTAC 59.478 40.000 0.00 0.00 0.00 2.01
7305 10287 5.484715 AGCCAGCAGTTCGTTTTACTATTA 58.515 37.500 0.00 0.00 0.00 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.491675 ATTGAAAACTCGGGAGGTCC 57.508 50.000 0.00 0.00 0.00 4.46
2 3 2.937149 GCTATTGAAAACTCGGGAGGTC 59.063 50.000 0.00 0.00 0.00 3.85
5 6 4.034510 GTGATGCTATTGAAAACTCGGGAG 59.965 45.833 0.00 0.00 0.00 4.30
8 9 3.689161 TGGTGATGCTATTGAAAACTCGG 59.311 43.478 0.00 0.00 0.00 4.63
10 11 4.437390 CGGTGGTGATGCTATTGAAAACTC 60.437 45.833 0.00 0.00 0.00 3.01
11 12 3.440173 CGGTGGTGATGCTATTGAAAACT 59.560 43.478 0.00 0.00 0.00 2.66
14 15 3.066291 ACGGTGGTGATGCTATTGAAA 57.934 42.857 0.00 0.00 0.00 2.69
15 16 2.779755 ACGGTGGTGATGCTATTGAA 57.220 45.000 0.00 0.00 0.00 2.69
16 17 2.159014 GGTACGGTGGTGATGCTATTGA 60.159 50.000 0.00 0.00 0.00 2.57
17 18 2.158957 AGGTACGGTGGTGATGCTATTG 60.159 50.000 0.00 0.00 0.00 1.90
18 19 2.116238 AGGTACGGTGGTGATGCTATT 58.884 47.619 0.00 0.00 0.00 1.73
19 20 1.789523 AGGTACGGTGGTGATGCTAT 58.210 50.000 0.00 0.00 0.00 2.97
20 21 1.479323 GAAGGTACGGTGGTGATGCTA 59.521 52.381 0.00 0.00 0.00 3.49
21 22 0.249398 GAAGGTACGGTGGTGATGCT 59.751 55.000 0.00 0.00 0.00 3.79
22 23 1.082117 CGAAGGTACGGTGGTGATGC 61.082 60.000 0.00 0.00 0.00 3.91
28 29 0.179119 GATGGTCGAAGGTACGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
33 34 4.488879 AGTTTAACGATGGTCGAAGGTAC 58.511 43.478 6.34 0.00 43.74 3.34
54 55 5.073311 TCCACTAAGGATCAAACTCGAAG 57.927 43.478 0.00 0.00 43.07 3.79
74 75 9.952188 GGCACTTGTATCTTTAATTCTTTATCC 57.048 33.333 0.00 0.00 0.00 2.59
102 103 3.864003 GCTCGTAGCTTGGTAGTTTAAGG 59.136 47.826 0.00 0.00 38.45 2.69
109 110 2.885266 TCATAGGCTCGTAGCTTGGTAG 59.115 50.000 0.00 0.00 41.99 3.18
150 151 9.429359 CATTGAACTCTAGTGTTCTGACTAAAT 57.571 33.333 28.48 19.16 44.63 1.40
215 216 3.018856 CAATTTGCATGGAGAGTGCCTA 58.981 45.455 0.00 0.00 41.83 3.93
225 226 3.253921 TCAGAGTGACACAATTTGCATGG 59.746 43.478 8.59 0.00 0.00 3.66
239 240 7.126268 TCCAAAGGAATCTAATCATCAGAGTGA 59.874 37.037 0.00 0.00 0.00 3.41
269 270 1.144093 CTTGAACTGGGTGGGTTGGTA 59.856 52.381 0.00 0.00 0.00 3.25
289 290 5.918011 CGAGCATCTGTCTTAAATCTAGGAC 59.082 44.000 0.00 0.00 35.28 3.85
290 291 5.508153 GCGAGCATCTGTCTTAAATCTAGGA 60.508 44.000 0.00 0.00 0.00 2.94
302 303 2.012673 AGGAAAATGCGAGCATCTGTC 58.987 47.619 11.26 8.63 35.31 3.51
305 306 2.408271 TCAGGAAAATGCGAGCATCT 57.592 45.000 11.26 1.26 35.31 2.90
307 308 4.460948 AAATTCAGGAAAATGCGAGCAT 57.539 36.364 4.52 4.52 38.46 3.79
335 336 4.442375 TTGACAAAGTTGCCGAAAAGAA 57.558 36.364 0.00 0.00 0.00 2.52
336 337 4.338118 AGATTGACAAAGTTGCCGAAAAGA 59.662 37.500 0.00 0.00 0.00 2.52
359 360 0.250553 ACCGAACCGCCAAATCTTGA 60.251 50.000 0.00 0.00 0.00 3.02
382 383 6.811268 TTCATTTTGAAACGCGGTGACGAG 62.811 45.833 12.47 0.00 45.28 4.18
383 384 5.073364 TTCATTTTGAAACGCGGTGACGA 62.073 43.478 12.47 0.00 45.28 4.20
384 385 2.851386 TTCATTTTGAAACGCGGTGACG 60.851 45.455 12.47 0.00 45.25 4.35
386 387 2.097629 TGTTCATTTTGAAACGCGGTGA 59.902 40.909 12.47 0.00 38.22 4.02
387 388 2.455032 TGTTCATTTTGAAACGCGGTG 58.545 42.857 12.47 0.00 38.22 4.94
411 417 4.626042 CTGGACTACCATGTATTGAGAGC 58.374 47.826 0.00 0.00 45.87 4.09
415 421 2.483013 GCGCTGGACTACCATGTATTGA 60.483 50.000 0.00 0.00 45.87 2.57
431 437 6.366644 GCAATTATGTTTACATATGCGCTG 57.633 37.500 9.73 0.08 38.49 5.18
439 445 4.997565 AGCAAGCGCAATTATGTTTACAT 58.002 34.783 11.47 0.53 42.27 2.29
440 446 4.433186 AGCAAGCGCAATTATGTTTACA 57.567 36.364 11.47 0.00 42.27 2.41
483 489 7.438459 GCACTATTACATCCTGTTCTCGTTTAT 59.562 37.037 0.00 0.00 0.00 1.40
489 495 4.051922 CCGCACTATTACATCCTGTTCTC 58.948 47.826 0.00 0.00 0.00 2.87
498 504 5.599999 AGAGAGAAACCGCACTATTACAT 57.400 39.130 0.00 0.00 0.00 2.29
509 515 7.545362 ACATCATCAATAAAGAGAGAAACCG 57.455 36.000 0.00 0.00 0.00 4.44
533 542 7.654520 GCTCGTGTCCCTTGTAACAATATATAA 59.345 37.037 0.00 0.00 0.00 0.98
535 544 5.989777 GCTCGTGTCCCTTGTAACAATATAT 59.010 40.000 0.00 0.00 0.00 0.86
537 546 4.189231 GCTCGTGTCCCTTGTAACAATAT 58.811 43.478 0.00 0.00 0.00 1.28
538 547 3.007074 TGCTCGTGTCCCTTGTAACAATA 59.993 43.478 0.00 0.00 0.00 1.90
539 548 2.224426 TGCTCGTGTCCCTTGTAACAAT 60.224 45.455 0.00 0.00 0.00 2.71
540 549 1.139256 TGCTCGTGTCCCTTGTAACAA 59.861 47.619 0.00 0.00 0.00 2.83
541 550 0.753867 TGCTCGTGTCCCTTGTAACA 59.246 50.000 0.00 0.00 0.00 2.41
542 551 1.873698 TTGCTCGTGTCCCTTGTAAC 58.126 50.000 0.00 0.00 0.00 2.50
544 553 1.270625 CCTTTGCTCGTGTCCCTTGTA 60.271 52.381 0.00 0.00 0.00 2.41
545 554 0.535102 CCTTTGCTCGTGTCCCTTGT 60.535 55.000 0.00 0.00 0.00 3.16
546 555 1.237285 CCCTTTGCTCGTGTCCCTTG 61.237 60.000 0.00 0.00 0.00 3.61
559 573 5.630415 TCTCCAACCTATATGACCCTTTG 57.370 43.478 0.00 0.00 0.00 2.77
568 582 3.261897 CGCATCCCTTCTCCAACCTATAT 59.738 47.826 0.00 0.00 0.00 0.86
570 584 1.417890 CGCATCCCTTCTCCAACCTAT 59.582 52.381 0.00 0.00 0.00 2.57
572 586 1.201429 ACGCATCCCTTCTCCAACCT 61.201 55.000 0.00 0.00 0.00 3.50
573 587 0.744771 GACGCATCCCTTCTCCAACC 60.745 60.000 0.00 0.00 0.00 3.77
596 610 2.034179 TGTCATGCGGTTATCTCTACGG 59.966 50.000 0.00 0.00 0.00 4.02
599 613 4.682787 CAACTGTCATGCGGTTATCTCTA 58.317 43.478 12.14 0.00 44.34 2.43
616 630 2.767505 AGGAACGGTCTTTAGCAACTG 58.232 47.619 0.00 0.00 0.00 3.16
617 631 4.612264 TTAGGAACGGTCTTTAGCAACT 57.388 40.909 0.00 0.00 0.00 3.16
618 632 5.874895 AATTAGGAACGGTCTTTAGCAAC 57.125 39.130 0.00 0.00 0.00 4.17
627 641 5.007385 TCTCTGCTTAATTAGGAACGGTC 57.993 43.478 0.00 0.00 0.00 4.79
628 642 5.615925 ATCTCTGCTTAATTAGGAACGGT 57.384 39.130 0.00 0.00 0.00 4.83
629 643 8.608844 AATAATCTCTGCTTAATTAGGAACGG 57.391 34.615 0.00 0.00 0.00 4.44
704 722 7.385752 TGAAAAATGTGAATCTCAAGGCAATTC 59.614 33.333 0.00 0.00 0.00 2.17
713 731 9.581099 CATGATGATTGAAAAATGTGAATCTCA 57.419 29.630 0.00 0.00 0.00 3.27
719 737 6.608539 ACCCATGATGATTGAAAAATGTGA 57.391 33.333 0.00 0.00 0.00 3.58
745 763 3.249917 GGTGGCACGGTTAAAATTGATG 58.750 45.455 12.17 0.00 0.00 3.07
777 795 2.939103 GCATTAGTCACACAGATGGACC 59.061 50.000 0.00 0.00 31.99 4.46
920 2340 6.641314 GGACTTGTGGTAATATACTGATGTCG 59.359 42.308 0.00 0.00 0.00 4.35
921 2341 7.438459 GTGGACTTGTGGTAATATACTGATGTC 59.562 40.741 0.00 0.00 0.00 3.06
922 2342 7.093068 TGTGGACTTGTGGTAATATACTGATGT 60.093 37.037 0.00 0.00 0.00 3.06
934 2354 3.275143 CTTGTGTTGTGGACTTGTGGTA 58.725 45.455 0.00 0.00 0.00 3.25
1093 2513 3.634397 CTGGAAGCTGAAGGTTATGGA 57.366 47.619 0.00 0.00 35.69 3.41
1968 3731 1.287815 CCACTTGTAGCCGTCGTCA 59.712 57.895 0.00 0.00 0.00 4.35
2060 3826 2.804090 GCGTCACGTCGAGGGTTC 60.804 66.667 10.27 0.00 0.00 3.62
2084 3850 3.433274 ACATGCACATATGTAGCGTATGC 59.567 43.478 18.43 12.69 39.40 3.14
2261 4039 4.000331 AGTTGTCACTTCTGATGAGTGG 58.000 45.455 9.07 0.00 34.60 4.00
2262 4040 5.050499 GTCAAGTTGTCACTTCTGATGAGTG 60.050 44.000 2.11 3.60 41.69 3.51
2520 4306 3.854286 AACAGCGAAAACAGTACTTCG 57.146 42.857 9.78 9.78 45.58 3.79
2534 4320 5.811100 TGGGGTTTAAAGTTTTAAAACAGCG 59.189 36.000 28.03 0.00 46.80 5.18
2584 4375 5.799681 AAAAACAGTTCCAAAATGTGCTG 57.200 34.783 0.00 0.00 0.00 4.41
2869 4664 5.483685 AGTACACTTCTGGTAAAGCATGA 57.516 39.130 0.00 0.00 0.00 3.07
2918 4729 4.152402 ACAATATGTCGCCGATAATCAAGC 59.848 41.667 0.00 0.00 0.00 4.01
2991 4808 6.446318 TCTTCGAATTCATTGTTCCAAAAGG 58.554 36.000 6.22 0.00 0.00 3.11
2993 4810 7.038154 ACTCTTCGAATTCATTGTTCCAAAA 57.962 32.000 6.22 0.00 0.00 2.44
3087 4905 8.827677 GTCTACAGGTTATGTGATTTTCATACC 58.172 37.037 0.00 0.00 43.80 2.73
3102 4920 7.834881 TTCTTCTCTTTCTGTCTACAGGTTA 57.165 36.000 10.11 0.00 43.91 2.85
3105 4923 5.929415 GGTTTCTTCTCTTTCTGTCTACAGG 59.071 44.000 10.11 0.00 43.91 4.00
3157 4976 5.410924 GGCTATTCTGTGGAAATTTTGGAC 58.589 41.667 0.00 0.00 34.90 4.02
3172 4992 6.521527 AACTTCTATGGAATGGGCTATTCT 57.478 37.500 20.87 7.00 43.81 2.40
3341 5216 7.338703 CCCAAATGAGGATGATATTGTATCCAG 59.661 40.741 13.72 1.81 44.26 3.86
3534 5446 6.866248 CACAAAACTGTACTTCAACACCTTTT 59.134 34.615 0.00 0.00 0.00 2.27
3539 5451 7.966204 ACATTACACAAAACTGTACTTCAACAC 59.034 33.333 0.00 0.00 0.00 3.32
3622 5534 3.349927 TCAAGGGATGCACTTCAATCAG 58.650 45.455 0.00 0.00 0.00 2.90
3671 5583 9.301153 GGACAATTTTATAACTTATGCCAACTG 57.699 33.333 0.00 0.00 0.00 3.16
3698 5611 1.737838 TGCCATAAAGTTCTGCTCCG 58.262 50.000 0.00 0.00 0.00 4.63
3799 5753 7.365840 AGCTACATGTAAAGTGAGCTTTTAC 57.634 36.000 11.86 11.11 41.78 2.01
3838 5792 0.034670 ATTGGCTCTCTGTTCCCTGC 60.035 55.000 0.00 0.00 0.00 4.85
3839 5793 2.026449 AGAATTGGCTCTCTGTTCCCTG 60.026 50.000 0.00 0.00 0.00 4.45
3840 5794 2.238395 GAGAATTGGCTCTCTGTTCCCT 59.762 50.000 0.00 0.00 39.08 4.20
3843 5799 3.668447 TGTGAGAATTGGCTCTCTGTTC 58.332 45.455 4.19 0.00 42.11 3.18
3845 5801 3.777106 TTGTGAGAATTGGCTCTCTGT 57.223 42.857 4.19 0.00 42.11 3.41
3875 5834 6.578691 CAAAAGTTAACTACTGTACGAGTGC 58.421 40.000 8.92 0.00 37.12 4.40
4009 5969 5.656859 GCATTTAGGGTTCAATTTAGGAGGT 59.343 40.000 0.00 0.00 0.00 3.85
4010 5970 5.656416 TGCATTTAGGGTTCAATTTAGGAGG 59.344 40.000 0.00 0.00 0.00 4.30
4039 5999 9.806203 ATATACGTGTGCTAATTAAGTTGTGTA 57.194 29.630 0.00 0.00 0.00 2.90
4121 6081 9.190317 CCTAGAAAAATAACAAAGGCTTAGGAT 57.810 33.333 0.00 0.00 0.00 3.24
4127 6087 6.002082 ACGACCTAGAAAAATAACAAAGGCT 58.998 36.000 0.00 0.00 0.00 4.58
4128 6088 6.084277 CACGACCTAGAAAAATAACAAAGGC 58.916 40.000 0.00 0.00 0.00 4.35
4137 6098 3.189287 CAGCAAGCACGACCTAGAAAAAT 59.811 43.478 0.00 0.00 0.00 1.82
4138 6099 2.548057 CAGCAAGCACGACCTAGAAAAA 59.452 45.455 0.00 0.00 0.00 1.94
4170 6131 9.217278 CATGCAAATAAAGAGCTATCACTAGAT 57.783 33.333 0.00 0.00 38.29 1.98
4172 6133 8.375608 ACATGCAAATAAAGAGCTATCACTAG 57.624 34.615 0.00 0.00 0.00 2.57
4173 6134 7.986889 TGACATGCAAATAAAGAGCTATCACTA 59.013 33.333 0.00 0.00 0.00 2.74
4174 6135 6.825213 TGACATGCAAATAAAGAGCTATCACT 59.175 34.615 0.00 0.00 0.00 3.41
4175 6136 7.019774 TGACATGCAAATAAAGAGCTATCAC 57.980 36.000 0.00 0.00 0.00 3.06
4176 6137 7.812690 ATGACATGCAAATAAAGAGCTATCA 57.187 32.000 0.00 0.00 0.00 2.15
4177 6138 8.965172 CAAATGACATGCAAATAAAGAGCTATC 58.035 33.333 0.00 0.00 0.00 2.08
4178 6139 7.924412 CCAAATGACATGCAAATAAAGAGCTAT 59.076 33.333 0.00 0.00 0.00 2.97
4191 6249 4.598022 TGACCTAATCCAAATGACATGCA 58.402 39.130 0.00 0.00 0.00 3.96
4192 6250 4.883585 TCTGACCTAATCCAAATGACATGC 59.116 41.667 0.00 0.00 0.00 4.06
4201 6259 5.036916 AGGTTACCATCTGACCTAATCCAA 58.963 41.667 3.51 0.00 41.83 3.53
4211 6269 4.777896 AGAACAAGCTAGGTTACCATCTGA 59.222 41.667 6.90 0.00 0.00 3.27
4218 6276 5.690997 AAGCAAAGAACAAGCTAGGTTAC 57.309 39.130 6.90 2.57 37.70 2.50
4225 6283 7.981225 TCAAAGAAATTAAGCAAAGAACAAGCT 59.019 29.630 0.00 0.00 41.03 3.74
4255 6313 4.097892 CCCCACAACATAAAATGGACTAGC 59.902 45.833 0.00 0.00 33.80 3.42
4267 6325 1.002659 CTTGGACGTCCCCACAACATA 59.997 52.381 31.19 6.76 35.62 2.29
4422 6480 8.579850 AATAGAAATGCATGGAAAACTAGTCA 57.420 30.769 0.00 0.00 0.00 3.41
4451 6509 9.740710 ATGTAACCTTTTCTTCTAGCTAACAAT 57.259 29.630 0.00 0.00 0.00 2.71
4454 6512 8.549338 ACATGTAACCTTTTCTTCTAGCTAAC 57.451 34.615 0.00 0.00 0.00 2.34
4455 6513 8.999431 CAACATGTAACCTTTTCTTCTAGCTAA 58.001 33.333 0.00 0.00 0.00 3.09
4457 6515 6.998673 ACAACATGTAACCTTTTCTTCTAGCT 59.001 34.615 0.00 0.00 0.00 3.32
4460 6518 9.841295 AGTAACAACATGTAACCTTTTCTTCTA 57.159 29.630 0.00 0.00 0.00 2.10
4461 6519 8.747538 AGTAACAACATGTAACCTTTTCTTCT 57.252 30.769 0.00 0.00 0.00 2.85
4503 6591 7.826918 AAGGTGGCTAGTTTTAAAACATACA 57.173 32.000 28.03 18.93 41.30 2.29
4513 6601 7.507956 ACCTACAAAATTAAGGTGGCTAGTTTT 59.492 33.333 0.00 0.00 42.08 2.43
4538 6626 5.813080 CCTAGTAAGGTGGTTAATTGCAC 57.187 43.478 0.00 0.00 38.19 4.57
4560 6648 1.141645 CATGCATGCCACAACACAAC 58.858 50.000 14.93 0.00 0.00 3.32
4619 6711 3.581755 ACACGCACGTATAGTTGTCATT 58.418 40.909 0.00 0.00 0.00 2.57
4628 6720 1.192757 GCACACAAACACGCACGTATA 59.807 47.619 0.00 0.00 0.00 1.47
4683 6779 1.670791 TGCATCGATCACACATGCAT 58.329 45.000 12.30 0.00 46.22 3.96
4685 6781 1.332686 ACATGCATCGATCACACATGC 59.667 47.619 19.46 11.17 41.38 4.06
4686 6782 2.353579 ACACATGCATCGATCACACATG 59.646 45.455 18.55 18.55 42.92 3.21
4687 6783 2.353579 CACACATGCATCGATCACACAT 59.646 45.455 0.00 0.00 0.00 3.21
4688 6784 1.733360 CACACATGCATCGATCACACA 59.267 47.619 0.00 0.00 0.00 3.72
4689 6785 1.063027 CCACACATGCATCGATCACAC 59.937 52.381 0.00 0.00 0.00 3.82
4690 6786 1.338960 ACCACACATGCATCGATCACA 60.339 47.619 0.00 0.00 0.00 3.58
4691 6787 1.063027 CACCACACATGCATCGATCAC 59.937 52.381 0.00 0.00 0.00 3.06
4692 6788 1.371595 CACCACACATGCATCGATCA 58.628 50.000 0.00 0.00 0.00 2.92
4693 6789 0.659427 CCACCACACATGCATCGATC 59.341 55.000 0.00 0.00 0.00 3.69
4694 6790 0.035152 ACCACCACACATGCATCGAT 60.035 50.000 0.00 0.00 0.00 3.59
4695 6791 0.954938 CACCACCACACATGCATCGA 60.955 55.000 0.00 0.00 0.00 3.59
4696 6792 0.954938 TCACCACCACACATGCATCG 60.955 55.000 0.00 0.00 0.00 3.84
4697 6793 1.402968 GATCACCACCACACATGCATC 59.597 52.381 0.00 0.00 0.00 3.91
4838 6957 0.749649 GTGAGCCAGAGATCGACCAT 59.250 55.000 0.00 0.00 0.00 3.55
5015 7366 4.218200 TGTTCGGGACTTAACTTATCGACA 59.782 41.667 0.00 0.00 0.00 4.35
5037 7388 3.213506 TGCCATAGTCAAATCCCGAATG 58.786 45.455 0.00 0.00 0.00 2.67
5042 7393 5.652452 ACTAAACTTGCCATAGTCAAATCCC 59.348 40.000 0.00 0.00 0.00 3.85
5044 7395 7.029563 CCAACTAAACTTGCCATAGTCAAATC 58.970 38.462 0.00 0.00 0.00 2.17
5052 7403 2.491693 GCTGCCAACTAAACTTGCCATA 59.508 45.455 0.00 0.00 0.00 2.74
5060 7411 1.885887 TGTCATGGCTGCCAACTAAAC 59.114 47.619 27.24 18.06 36.95 2.01
5070 7421 1.276989 AGGGCAAATTTGTCATGGCTG 59.723 47.619 23.34 0.00 39.38 4.85
5072 7423 2.477845 AAGGGCAAATTTGTCATGGC 57.522 45.000 23.34 8.50 38.76 4.40
5073 7424 3.742385 ACAAAGGGCAAATTTGTCATGG 58.258 40.909 23.34 14.82 45.33 3.66
5084 7435 7.106239 TCTGACAAAAATTAAACAAAGGGCAA 58.894 30.769 0.00 0.00 0.00 4.52
5102 7453 4.350346 CAAGCACGTCAATTTTCTGACAA 58.650 39.130 4.75 0.00 45.03 3.18
5125 7476 2.729882 CGAGGACGACAAGTTTAGTTGG 59.270 50.000 0.00 0.00 42.66 3.77
5126 7477 2.155155 GCGAGGACGACAAGTTTAGTTG 59.845 50.000 0.00 0.00 42.66 3.16
5127 7478 2.401351 GCGAGGACGACAAGTTTAGTT 58.599 47.619 0.00 0.00 42.66 2.24
5128 7479 1.665161 CGCGAGGACGACAAGTTTAGT 60.665 52.381 0.00 0.00 42.66 2.24
5129 7480 0.982673 CGCGAGGACGACAAGTTTAG 59.017 55.000 0.00 0.00 42.66 1.85
5130 7481 0.311790 ACGCGAGGACGACAAGTTTA 59.688 50.000 15.93 0.00 42.66 2.01
5131 7482 0.938168 GACGCGAGGACGACAAGTTT 60.938 55.000 15.93 0.00 42.66 2.66
5132 7483 1.371389 GACGCGAGGACGACAAGTT 60.371 57.895 15.93 0.00 42.66 2.66
5133 7484 2.067091 TTGACGCGAGGACGACAAGT 62.067 55.000 15.93 0.00 41.41 3.16
5134 7485 1.371267 TTGACGCGAGGACGACAAG 60.371 57.895 15.93 0.00 41.41 3.16
5140 7491 2.061740 ACTTTAGTTGACGCGAGGAC 57.938 50.000 15.93 7.82 0.00 3.85
5162 7513 5.226396 TGGCAAATCGAACACTTTTTATGG 58.774 37.500 0.00 0.00 0.00 2.74
5163 7514 6.585702 TCATGGCAAATCGAACACTTTTTATG 59.414 34.615 0.00 0.00 0.00 1.90
5164 7515 6.686630 TCATGGCAAATCGAACACTTTTTAT 58.313 32.000 0.00 0.00 0.00 1.40
5172 7523 4.780275 TTTGATCATGGCAAATCGAACA 57.220 36.364 10.34 0.40 30.87 3.18
5210 7561 9.669353 CATCTGTTTATTTTCCGGAATGATAAG 57.331 33.333 19.62 13.02 0.00 1.73
5253 7605 2.938838 TCGGTTTGATGGTCCTGTTTT 58.061 42.857 0.00 0.00 0.00 2.43
5272 7624 6.183360 CCATTTGCCATATCGTGTATCAGATC 60.183 42.308 0.00 0.00 0.00 2.75
5274 7626 4.996758 CCATTTGCCATATCGTGTATCAGA 59.003 41.667 0.00 0.00 0.00 3.27
5276 7628 3.501828 GCCATTTGCCATATCGTGTATCA 59.498 43.478 0.00 0.00 0.00 2.15
5338 7690 3.868077 GCCTCTGCACTGACTAACTAATG 59.132 47.826 0.00 0.00 37.47 1.90
5368 7816 3.565764 TCTTGGTTGCTCCATCTATGG 57.434 47.619 2.34 2.34 46.60 2.74
5439 7887 1.376812 GCTCCGGGTGGTTTACTGG 60.377 63.158 0.00 0.00 36.30 4.00
5518 7966 1.354040 GGAGCTGTCTGATCAACGTG 58.646 55.000 0.00 0.00 31.67 4.49
5560 8008 9.509855 CACTATCAGAGAGTAGACAATTAACAC 57.490 37.037 0.00 0.00 0.00 3.32
5602 8050 2.721425 ACTTCCTTCGTCCCAAAACA 57.279 45.000 0.00 0.00 0.00 2.83
5622 8070 3.317993 GGCATGTCACCCGCTTAATAATT 59.682 43.478 0.00 0.00 0.00 1.40
5670 8118 6.295249 TGTTGAATACAGGAACAATCAGTGA 58.705 36.000 0.00 0.00 31.68 3.41
5722 8568 5.176774 TGAACTAACACAGATTAACACGCAG 59.823 40.000 0.00 0.00 0.00 5.18
5734 8580 7.701078 AGCACGTATATAACTGAACTAACACAG 59.299 37.037 0.00 0.00 39.65 3.66
6192 9056 7.865706 AGAATAGAAAACAACACACTGTTCT 57.134 32.000 0.00 0.00 38.77 3.01
6202 9070 7.545965 TCACTGCTAGCTAGAATAGAAAACAAC 59.454 37.037 25.15 2.23 42.77 3.32
6254 9205 8.026341 AGTTTTCTACTACGCCATTTCTTTAC 57.974 34.615 0.00 0.00 34.56 2.01
6280 9231 4.395231 ACACAACATCTTCATCATCAGCTG 59.605 41.667 7.63 7.63 0.00 4.24
6705 9659 1.813859 CAGATAACCTCGTCGGGCA 59.186 57.895 0.00 0.00 36.97 5.36
6757 9717 4.785453 GCCTGAGGCTTCACCCCG 62.785 72.222 17.96 0.00 46.69 5.73
6772 9733 0.691078 TCACCAGATCCCAGGTAGCC 60.691 60.000 2.15 0.00 36.07 3.93
6774 9735 2.752030 TCTTCACCAGATCCCAGGTAG 58.248 52.381 2.15 0.00 36.07 3.18
6798 9774 1.338674 TGCCATGTCTACCTTTCCACG 60.339 52.381 0.00 0.00 0.00 4.94
6856 9835 7.419287 GGAACCTACACCATGGTATACATACAA 60.419 40.741 19.28 0.00 37.84 2.41
6886 9867 3.181503 CCGACAATGATTTCAGCAGGAAG 60.182 47.826 0.00 0.00 36.72 3.46
6923 9904 4.425772 TCAGAACCCACAAGAATCTAGGA 58.574 43.478 0.00 0.00 0.00 2.94
6953 9935 8.507249 CGACTTTTGGAATAAGAAATTCTCACT 58.493 33.333 0.00 0.00 0.00 3.41
6996 9978 5.373222 GTTTTGGAACTTGGGCCTATTTTT 58.627 37.500 4.53 0.00 32.91 1.94
7000 9982 2.536066 GGTTTTGGAACTTGGGCCTAT 58.464 47.619 4.53 0.00 36.03 2.57
7021 10003 1.668751 TCGTTGCTCAAAGTTGGTGTC 59.331 47.619 0.00 0.00 0.00 3.67
7042 10024 3.924686 TGTAAGTGAGCTAAGCTTTACGC 59.075 43.478 3.20 5.58 39.88 4.42
7043 10025 5.805486 TCATGTAAGTGAGCTAAGCTTTACG 59.195 40.000 3.20 0.00 39.88 3.18
7044 10026 6.590292 TGTCATGTAAGTGAGCTAAGCTTTAC 59.410 38.462 3.20 0.00 39.88 2.01
7045 10027 6.697395 TGTCATGTAAGTGAGCTAAGCTTTA 58.303 36.000 3.20 0.00 39.88 1.85
7046 10028 5.551233 TGTCATGTAAGTGAGCTAAGCTTT 58.449 37.500 3.20 0.00 39.88 3.51
7047 10029 5.152623 TGTCATGTAAGTGAGCTAAGCTT 57.847 39.130 3.48 3.48 39.88 3.74
7048 10030 4.808414 TGTCATGTAAGTGAGCTAAGCT 57.192 40.909 0.00 0.00 43.88 3.74
7049 10031 6.428385 AATTGTCATGTAAGTGAGCTAAGC 57.572 37.500 0.00 0.00 0.00 3.09
7050 10032 7.965107 GGAAAATTGTCATGTAAGTGAGCTAAG 59.035 37.037 0.00 0.00 0.00 2.18
7051 10033 7.094377 GGGAAAATTGTCATGTAAGTGAGCTAA 60.094 37.037 0.00 0.00 0.00 3.09
7052 10034 6.374333 GGGAAAATTGTCATGTAAGTGAGCTA 59.626 38.462 0.00 0.00 0.00 3.32
7053 10035 5.183904 GGGAAAATTGTCATGTAAGTGAGCT 59.816 40.000 0.00 0.00 0.00 4.09
7054 10036 5.183904 AGGGAAAATTGTCATGTAAGTGAGC 59.816 40.000 0.00 0.00 0.00 4.26
7055 10037 6.824305 AGGGAAAATTGTCATGTAAGTGAG 57.176 37.500 0.00 0.00 0.00 3.51
7056 10038 7.069331 ACAAAGGGAAAATTGTCATGTAAGTGA 59.931 33.333 0.00 0.00 34.84 3.41
7057 10039 7.169645 CACAAAGGGAAAATTGTCATGTAAGTG 59.830 37.037 0.00 0.00 37.66 3.16
7058 10040 7.209475 CACAAAGGGAAAATTGTCATGTAAGT 58.791 34.615 0.00 0.00 37.66 2.24
7059 10041 6.646240 CCACAAAGGGAAAATTGTCATGTAAG 59.354 38.462 0.00 0.00 37.66 2.34
7060 10042 6.325028 TCCACAAAGGGAAAATTGTCATGTAA 59.675 34.615 0.00 0.00 37.66 2.41
7099 10081 3.391049 GTGAGAGTACACTCCGCTTTTT 58.609 45.455 16.41 0.00 43.88 1.94
7136 10118 6.453926 TGTATCTGCCTAATAACACACGTA 57.546 37.500 0.00 0.00 0.00 3.57
7227 10209 7.220740 TCACTTATGGTCACTCATACAACAAA 58.779 34.615 0.00 0.00 30.23 2.83
7236 10218 7.998964 TCTATAGTCATCACTTATGGTCACTCA 59.001 37.037 0.00 0.00 36.15 3.41
7243 10225 6.939622 TGCCATCTATAGTCATCACTTATGG 58.060 40.000 0.00 3.60 36.15 2.74
7259 10241 0.475044 TGATGCTGGCATGCCATCTA 59.525 50.000 38.47 26.41 46.15 1.98
7271 10253 3.055209 ACTGCTGGCTATATGATGCTG 57.945 47.619 0.00 0.00 0.00 4.41
7273 10255 2.414481 CGAACTGCTGGCTATATGATGC 59.586 50.000 0.00 0.00 0.00 3.91
7436 10660 5.417266 TCAAAATCATGTGCGGGAATTTAGA 59.583 36.000 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.