Multiple sequence alignment - TraesCS3D01G117000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G117000 chr3D 100.000 4910 0 0 1 4910 70709655 70704746 0.000000e+00 9068.0
1 TraesCS3D01G117000 chr3D 93.820 712 31 7 1700 2407 333205135 333204433 0.000000e+00 1059.0
2 TraesCS3D01G117000 chr3D 91.315 426 27 5 1987 2407 564131949 564131529 1.530000e-159 573.0
3 TraesCS3D01G117000 chr3D 98.889 90 1 0 4083 4172 70705528 70705439 1.410000e-35 161.0
4 TraesCS3D01G117000 chr3D 98.889 90 1 0 4128 4217 70705573 70705484 1.410000e-35 161.0
5 TraesCS3D01G117000 chr3D 91.304 69 3 3 2691 2757 110398499 110398566 1.880000e-14 91.6
6 TraesCS3D01G117000 chr3A 91.926 1350 85 9 2764 4097 82240239 82238898 0.000000e+00 1868.0
7 TraesCS3D01G117000 chr3A 91.041 1239 79 10 2876 4100 82113396 82112176 0.000000e+00 1644.0
8 TraesCS3D01G117000 chr3A 91.732 1016 67 7 2759 3759 82347426 82346413 0.000000e+00 1395.0
9 TraesCS3D01G117000 chr3A 86.180 1165 84 47 566 1698 82241628 82240509 0.000000e+00 1188.0
10 TraesCS3D01G117000 chr3A 95.105 715 29 5 1696 2406 60863493 60864205 0.000000e+00 1122.0
11 TraesCS3D01G117000 chr3A 89.560 795 56 13 848 1634 82348681 82347906 0.000000e+00 983.0
12 TraesCS3D01G117000 chr3A 89.946 746 62 7 4173 4910 82112193 82111453 0.000000e+00 950.0
13 TraesCS3D01G117000 chr3A 90.754 703 42 10 917 1614 82114086 82113402 0.000000e+00 917.0
14 TraesCS3D01G117000 chr3A 91.267 584 38 3 153 724 82349503 82348921 0.000000e+00 784.0
15 TraesCS3D01G117000 chr3A 82.065 736 100 20 47 763 82238180 82237458 2.530000e-167 599.0
16 TraesCS3D01G117000 chr3A 86.076 395 54 1 4200 4594 82238885 82238492 1.630000e-114 424.0
17 TraesCS3D01G117000 chr3A 85.000 420 56 4 4176 4594 82346023 82345610 2.110000e-113 420.0
18 TraesCS3D01G117000 chr3A 86.139 303 25 3 3825 4127 82346270 82345985 1.330000e-80 311.0
19 TraesCS3D01G117000 chr3A 95.455 132 3 2 2593 2723 82240369 82240240 1.790000e-49 207.0
20 TraesCS3D01G117000 chr3A 95.146 103 3 2 2407 2507 82240507 82240405 1.410000e-35 161.0
21 TraesCS3D01G117000 chr3A 97.561 41 1 0 1630 1670 82347892 82347852 2.450000e-08 71.3
22 TraesCS3D01G117000 chr3A 97.436 39 1 0 3757 3795 82346309 82346271 3.170000e-07 67.6
23 TraesCS3D01G117000 chr1D 96.062 711 24 3 1699 2407 159191727 159191019 0.000000e+00 1155.0
24 TraesCS3D01G117000 chr1D 99.130 115 1 0 2201 2315 445251497 445251383 1.790000e-49 207.0
25 TraesCS3D01G117000 chr1D 100.000 78 0 0 2330 2407 445251519 445251596 1.420000e-30 145.0
26 TraesCS3D01G117000 chr1D 90.411 73 6 1 2693 2764 246070304 246070232 1.450000e-15 95.3
27 TraesCS3D01G117000 chr1D 91.429 70 3 1 2698 2764 464799794 464799725 5.230000e-15 93.5
28 TraesCS3D01G117000 chr1D 89.552 67 6 1 2691 2757 251742157 251742222 3.150000e-12 84.2
29 TraesCS3D01G117000 chr7D 92.160 727 25 8 1686 2407 610796648 610795949 0.000000e+00 998.0
30 TraesCS3D01G117000 chr7D 96.667 60 2 0 2698 2757 139819004 139819063 3.130000e-17 100.0
31 TraesCS3D01G117000 chr5A 94.136 648 31 4 1697 2339 15123622 15122977 0.000000e+00 979.0
32 TraesCS3D01G117000 chr5A 91.549 71 1 3 2698 2764 385397422 385397491 5.230000e-15 93.5
33 TraesCS3D01G117000 chr4A 93.750 640 28 6 1696 2325 601150618 601149981 0.000000e+00 950.0
34 TraesCS3D01G117000 chr4A 86.255 713 80 12 1699 2407 698455991 698455293 0.000000e+00 758.0
35 TraesCS3D01G117000 chr6D 88.873 719 62 12 1699 2405 29875062 29874350 0.000000e+00 869.0
36 TraesCS3D01G117000 chr2D 97.847 418 8 1 1990 2407 181585047 181585463 0.000000e+00 721.0
37 TraesCS3D01G117000 chr2D 95.522 268 9 2 1739 2004 181564875 181565141 4.540000e-115 425.0
38 TraesCS3D01G117000 chr2D 96.774 62 1 1 2696 2757 485621621 485621681 8.700000e-18 102.0
39 TraesCS3D01G117000 chr2D 98.182 55 1 0 2698 2752 70029111 70029057 4.050000e-16 97.1
40 TraesCS3D01G117000 chr3B 88.333 180 18 3 1700 1879 751744589 751744413 3.850000e-51 213.0
41 TraesCS3D01G117000 chr6B 96.667 60 2 0 2698 2757 594860721 594860780 3.130000e-17 100.0
42 TraesCS3D01G117000 chr6B 88.679 53 6 0 870 922 642730678 642730730 1.140000e-06 65.8
43 TraesCS3D01G117000 chr7B 91.304 69 4 1 2696 2764 620597893 620597827 5.230000e-15 93.5
44 TraesCS3D01G117000 chr7B 91.837 49 4 0 870 918 547279247 547279295 8.820000e-08 69.4
45 TraesCS3D01G117000 chr2B 98.039 51 1 0 2698 2748 765092958 765093008 6.770000e-14 89.8
46 TraesCS3D01G117000 chr2B 90.000 50 5 0 869 918 175629199 175629150 1.140000e-06 65.8
47 TraesCS3D01G117000 chr2A 87.838 74 8 1 2693 2766 585135351 585135423 8.760000e-13 86.1
48 TraesCS3D01G117000 chr2A 87.671 73 8 1 2694 2766 585135423 585135352 3.150000e-12 84.2
49 TraesCS3D01G117000 chr4D 86.667 75 9 1 2698 2771 487289823 487289897 1.130000e-11 82.4
50 TraesCS3D01G117000 chr4B 88.136 59 6 1 866 923 161519236 161519294 8.820000e-08 69.4
51 TraesCS3D01G117000 chr7A 97.297 37 1 0 1758 1794 273648967 273649003 4.100000e-06 63.9
52 TraesCS3D01G117000 chr7A 94.872 39 2 0 880 918 508567379 508567341 1.480000e-05 62.1
53 TraesCS3D01G117000 chr7A 85.965 57 4 3 850 902 672021730 672021786 1.910000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G117000 chr3D 70704746 70709655 4909 True 9068.000000 9068 100.000000 1 4910 1 chr3D.!!$R1 4909
1 TraesCS3D01G117000 chr3D 333204433 333205135 702 True 1059.000000 1059 93.820000 1700 2407 1 chr3D.!!$R2 707
2 TraesCS3D01G117000 chr3A 82111453 82114086 2633 True 1170.333333 1644 90.580333 917 4910 3 chr3A.!!$R1 3993
3 TraesCS3D01G117000 chr3A 60863493 60864205 712 False 1122.000000 1122 95.105000 1696 2406 1 chr3A.!!$F1 710
4 TraesCS3D01G117000 chr3A 82237458 82241628 4170 True 741.166667 1868 89.474667 47 4594 6 chr3A.!!$R2 4547
5 TraesCS3D01G117000 chr3A 82345610 82349503 3893 True 575.985714 1395 91.242143 153 4594 7 chr3A.!!$R3 4441
6 TraesCS3D01G117000 chr1D 159191019 159191727 708 True 1155.000000 1155 96.062000 1699 2407 1 chr1D.!!$R1 708
7 TraesCS3D01G117000 chr7D 610795949 610796648 699 True 998.000000 998 92.160000 1686 2407 1 chr7D.!!$R1 721
8 TraesCS3D01G117000 chr5A 15122977 15123622 645 True 979.000000 979 94.136000 1697 2339 1 chr5A.!!$R1 642
9 TraesCS3D01G117000 chr4A 601149981 601150618 637 True 950.000000 950 93.750000 1696 2325 1 chr4A.!!$R1 629
10 TraesCS3D01G117000 chr4A 698455293 698455991 698 True 758.000000 758 86.255000 1699 2407 1 chr4A.!!$R2 708
11 TraesCS3D01G117000 chr6D 29874350 29875062 712 True 869.000000 869 88.873000 1699 2405 1 chr6D.!!$R1 706

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.179001 ACCCCAAACAGTACTGGCAC 60.179 55.000 26.12 0.00 34.19 5.01 F
105 106 0.252197 AATCCACCTCGGCCAGTTAC 59.748 55.000 2.24 0.00 33.14 2.50 F
112 113 0.319211 CTCGGCCAGTTACACGACAA 60.319 55.000 2.24 0.00 0.00 3.18 F
113 114 0.598158 TCGGCCAGTTACACGACAAC 60.598 55.000 2.24 0.00 0.00 3.32 F
237 238 0.603569 GGAGTTGCTCCGAAGTGAGA 59.396 55.000 0.00 0.00 41.08 3.27 F
1359 1556 0.767446 TCCCGTAGTTTGGTGGGGAA 60.767 55.000 0.00 0.00 43.77 3.97 F
1549 1761 1.000938 AGTGTGTTCGGTACCGTTCTC 60.001 52.381 32.16 23.93 40.74 2.87 F
3126 3505 0.108329 AGGCGTAATTGAGTCCCGTG 60.108 55.000 0.00 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1341 1538 0.607217 GTTCCCCACCAAACTACGGG 60.607 60.000 0.0 0.0 38.52 5.28 R
1350 1547 0.856982 ACCATTTCAGTTCCCCACCA 59.143 50.000 0.0 0.0 0.00 4.17 R
1549 1761 0.869068 AGTCGATGGTATCTCTCGCG 59.131 55.000 0.0 0.0 32.62 5.87 R
2078 2333 1.331756 GTGTGCTTCAGTGACCAACAG 59.668 52.381 0.0 0.0 0.00 3.16 R
2118 2392 4.415150 CCCTGCCATGCACGAGGT 62.415 66.667 0.0 0.0 33.79 3.85 R
3126 3505 0.329596 ATGGGTCCAGAGTCAAAGGC 59.670 55.000 0.0 0.0 0.00 4.35 R
3397 3778 0.458669 CGTCGCATGTAGGTAAGGGT 59.541 55.000 0.0 0.0 0.00 4.34 R
4302 4805 0.037590 TGAACCTTGGGACGGGATTG 59.962 55.000 0.0 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.578157 ATCAACTAACCCCAAACAGTACT 57.422 39.130 0.00 0.00 0.00 2.73
23 24 4.710324 TCAACTAACCCCAAACAGTACTG 58.290 43.478 21.44 21.44 0.00 2.74
24 25 3.782656 ACTAACCCCAAACAGTACTGG 57.217 47.619 26.12 10.29 34.19 4.00
25 26 2.224695 ACTAACCCCAAACAGTACTGGC 60.225 50.000 26.12 0.00 34.19 4.85
26 27 0.553819 AACCCCAAACAGTACTGGCA 59.446 50.000 26.12 0.00 34.19 4.92
27 28 0.179001 ACCCCAAACAGTACTGGCAC 60.179 55.000 26.12 0.00 34.19 5.01
28 29 1.234615 CCCCAAACAGTACTGGCACG 61.235 60.000 26.12 11.54 34.19 5.34
29 30 1.234615 CCCAAACAGTACTGGCACGG 61.235 60.000 26.12 18.81 42.99 4.94
30 31 1.234615 CCAAACAGTACTGGCACGGG 61.235 60.000 26.12 15.43 40.47 5.28
31 32 1.599797 AAACAGTACTGGCACGGGC 60.600 57.895 26.12 0.00 40.47 6.13
32 33 2.332312 AAACAGTACTGGCACGGGCA 62.332 55.000 26.12 5.92 43.71 5.36
64 65 3.697747 CGTGGTGGCGGGAGGTTA 61.698 66.667 0.00 0.00 0.00 2.85
65 66 2.046604 GTGGTGGCGGGAGGTTAC 60.047 66.667 0.00 0.00 0.00 2.50
66 67 2.527123 TGGTGGCGGGAGGTTACA 60.527 61.111 0.00 0.00 0.00 2.41
67 68 2.046604 GGTGGCGGGAGGTTACAC 60.047 66.667 0.00 0.00 0.00 2.90
68 69 2.745037 GTGGCGGGAGGTTACACA 59.255 61.111 0.00 0.00 32.58 3.72
69 70 1.375523 GTGGCGGGAGGTTACACAG 60.376 63.158 0.00 0.00 32.58 3.66
70 71 1.534476 TGGCGGGAGGTTACACAGA 60.534 57.895 0.00 0.00 0.00 3.41
71 72 1.218316 GGCGGGAGGTTACACAGAG 59.782 63.158 0.00 0.00 0.00 3.35
72 73 1.218316 GCGGGAGGTTACACAGAGG 59.782 63.158 0.00 0.00 0.00 3.69
73 74 1.898154 CGGGAGGTTACACAGAGGG 59.102 63.158 0.00 0.00 0.00 4.30
74 75 1.614241 CGGGAGGTTACACAGAGGGG 61.614 65.000 0.00 0.00 0.00 4.79
75 76 1.602771 GGAGGTTACACAGAGGGGC 59.397 63.158 0.00 0.00 0.00 5.80
76 77 0.910088 GGAGGTTACACAGAGGGGCT 60.910 60.000 0.00 0.00 0.00 5.19
77 78 0.984995 GAGGTTACACAGAGGGGCTT 59.015 55.000 0.00 0.00 0.00 4.35
78 79 0.693049 AGGTTACACAGAGGGGCTTG 59.307 55.000 0.00 0.00 0.00 4.01
79 80 0.322546 GGTTACACAGAGGGGCTTGG 60.323 60.000 0.00 0.00 0.00 3.61
80 81 0.960861 GTTACACAGAGGGGCTTGGC 60.961 60.000 0.00 0.00 0.00 4.52
90 91 2.885113 GGCTTGGCCGACAAATCC 59.115 61.111 0.00 0.00 39.62 3.01
91 92 1.976474 GGCTTGGCCGACAAATCCA 60.976 57.895 0.00 0.00 39.62 3.41
92 93 1.212751 GCTTGGCCGACAAATCCAC 59.787 57.895 0.00 0.00 38.91 4.02
93 94 1.883021 CTTGGCCGACAAATCCACC 59.117 57.895 0.00 0.00 38.91 4.61
94 95 0.609131 CTTGGCCGACAAATCCACCT 60.609 55.000 0.00 0.00 38.91 4.00
95 96 0.608035 TTGGCCGACAAATCCACCTC 60.608 55.000 0.00 0.00 35.79 3.85
96 97 2.106683 GGCCGACAAATCCACCTCG 61.107 63.158 0.00 0.00 0.00 4.63
97 98 2.106683 GCCGACAAATCCACCTCGG 61.107 63.158 0.50 0.50 46.97 4.63
98 99 2.106683 CCGACAAATCCACCTCGGC 61.107 63.158 0.00 0.00 39.32 5.54
99 100 2.106683 CGACAAATCCACCTCGGCC 61.107 63.158 0.00 0.00 33.14 6.13
100 101 1.002624 GACAAATCCACCTCGGCCA 60.003 57.895 2.24 0.00 33.14 5.36
101 102 1.002134 ACAAATCCACCTCGGCCAG 60.002 57.895 2.24 0.00 33.14 4.85
102 103 1.002134 CAAATCCACCTCGGCCAGT 60.002 57.895 2.24 0.00 33.14 4.00
103 104 0.609131 CAAATCCACCTCGGCCAGTT 60.609 55.000 2.24 0.00 33.14 3.16
104 105 0.988832 AAATCCACCTCGGCCAGTTA 59.011 50.000 2.24 0.00 33.14 2.24
105 106 0.252197 AATCCACCTCGGCCAGTTAC 59.748 55.000 2.24 0.00 33.14 2.50
106 107 0.907704 ATCCACCTCGGCCAGTTACA 60.908 55.000 2.24 0.00 33.14 2.41
107 108 1.375523 CCACCTCGGCCAGTTACAC 60.376 63.158 2.24 0.00 0.00 2.90
108 109 1.736645 CACCTCGGCCAGTTACACG 60.737 63.158 2.24 0.00 0.00 4.49
109 110 1.904865 ACCTCGGCCAGTTACACGA 60.905 57.895 2.24 0.00 0.00 4.35
110 111 1.445582 CCTCGGCCAGTTACACGAC 60.446 63.158 2.24 0.00 0.00 4.34
111 112 1.287815 CTCGGCCAGTTACACGACA 59.712 57.895 2.24 0.00 0.00 4.35
112 113 0.319211 CTCGGCCAGTTACACGACAA 60.319 55.000 2.24 0.00 0.00 3.18
113 114 0.598158 TCGGCCAGTTACACGACAAC 60.598 55.000 2.24 0.00 0.00 3.32
114 115 0.876777 CGGCCAGTTACACGACAACA 60.877 55.000 2.24 0.00 0.00 3.33
115 116 1.301423 GGCCAGTTACACGACAACAA 58.699 50.000 0.00 0.00 0.00 2.83
116 117 1.003223 GGCCAGTTACACGACAACAAC 60.003 52.381 0.00 0.00 0.00 3.32
117 118 1.937899 GCCAGTTACACGACAACAACT 59.062 47.619 0.00 0.00 0.00 3.16
118 119 2.286184 GCCAGTTACACGACAACAACTG 60.286 50.000 6.38 6.38 44.74 3.16
119 120 2.933906 CCAGTTACACGACAACAACTGT 59.066 45.455 11.19 0.00 44.02 3.55
126 127 4.141144 ACAACAACTGTCAGCGGG 57.859 55.556 0.00 0.00 29.87 6.13
127 128 1.525995 ACAACAACTGTCAGCGGGG 60.526 57.895 0.00 0.00 29.87 5.73
128 129 1.227823 CAACAACTGTCAGCGGGGA 60.228 57.895 0.00 0.00 0.00 4.81
129 130 1.071471 AACAACTGTCAGCGGGGAG 59.929 57.895 0.00 0.00 0.00 4.30
166 167 1.673168 GGGCTTTGTGGATCTAGCAG 58.327 55.000 0.00 0.00 35.36 4.24
216 217 1.066002 CGGGCTTAATCACATGCTTGG 59.934 52.381 4.44 0.00 0.00 3.61
237 238 0.603569 GGAGTTGCTCCGAAGTGAGA 59.396 55.000 0.00 0.00 41.08 3.27
266 267 3.072476 TGGCTTGAGGCAGAGGAC 58.928 61.111 2.81 0.00 46.12 3.85
291 292 2.931512 TGTGTAGCATCGACGATGAA 57.068 45.000 35.61 21.94 42.09 2.57
344 345 1.421410 GACGCTAGTGGCCACGATTG 61.421 60.000 29.68 22.13 37.74 2.67
363 364 3.337694 TGTAACAACCCGGGAGTAATG 57.662 47.619 32.02 19.07 0.00 1.90
418 419 4.277672 GTGCAGCATGTCCATCTCATAAAT 59.722 41.667 0.00 0.00 39.31 1.40
522 523 6.192970 TCCCTTCTTCTTTCAATCTTCTGT 57.807 37.500 0.00 0.00 0.00 3.41
526 527 8.046107 CCCTTCTTCTTTCAATCTTCTGTATCT 58.954 37.037 0.00 0.00 0.00 1.98
529 530 9.593134 TTCTTCTTTCAATCTTCTGTATCTAGC 57.407 33.333 0.00 0.00 0.00 3.42
545 546 3.253220 TCTAGCCTCACCCAAAACCTAA 58.747 45.455 0.00 0.00 0.00 2.69
594 595 1.561542 ACTGTCCAGCCCCTTAATCAG 59.438 52.381 0.00 0.00 0.00 2.90
627 639 2.359850 GTGATGGCAGCCGGTGAA 60.360 61.111 7.03 0.00 0.00 3.18
631 643 1.304381 ATGGCAGCCGGTGAATTGT 60.304 52.632 7.03 0.00 0.00 2.71
708 750 4.475345 AGGACGCATCTTCCTTCTACTAT 58.525 43.478 0.00 0.00 40.95 2.12
715 757 7.388500 ACGCATCTTCCTTCTACTATAGTCTAC 59.612 40.741 9.12 0.00 0.00 2.59
788 975 3.950397 TCTGGCGTGACTGGAATAAATT 58.050 40.909 0.00 0.00 0.00 1.82
800 987 6.342111 ACTGGAATAAATTCTCTCTTCGTCC 58.658 40.000 2.91 0.00 37.00 4.79
817 1004 2.159393 CGTCCGGGTATACTTGTCGAAA 60.159 50.000 0.00 0.00 0.00 3.46
820 1007 4.872124 GTCCGGGTATACTTGTCGAAAAAT 59.128 41.667 0.00 0.00 0.00 1.82
821 1008 6.042143 GTCCGGGTATACTTGTCGAAAAATA 58.958 40.000 0.00 0.00 0.00 1.40
822 1009 6.199719 GTCCGGGTATACTTGTCGAAAAATAG 59.800 42.308 0.00 0.00 0.00 1.73
823 1010 6.096705 TCCGGGTATACTTGTCGAAAAATAGA 59.903 38.462 0.00 0.00 0.00 1.98
824 1011 6.927381 CCGGGTATACTTGTCGAAAAATAGAT 59.073 38.462 2.25 0.00 0.00 1.98
825 1012 7.095774 CCGGGTATACTTGTCGAAAAATAGATG 60.096 40.741 2.25 0.00 0.00 2.90
826 1013 7.650504 CGGGTATACTTGTCGAAAAATAGATGA 59.349 37.037 2.25 0.00 0.00 2.92
913 1100 7.230747 TCTGACAAGTATTTTTGAATGGAGGA 58.769 34.615 0.00 0.00 0.00 3.71
919 1106 9.231297 CAAGTATTTTTGAATGGAGGAAGTAGA 57.769 33.333 0.00 0.00 0.00 2.59
975 1170 2.675056 CGTCAGTGCAGGCTCTTGC 61.675 63.158 0.00 0.00 44.33 4.01
1343 1540 6.590234 ACAACCATTTCTGTTTAATCTCCC 57.410 37.500 0.00 0.00 0.00 4.30
1344 1541 5.183140 ACAACCATTTCTGTTTAATCTCCCG 59.817 40.000 0.00 0.00 0.00 5.14
1345 1542 4.918588 ACCATTTCTGTTTAATCTCCCGT 58.081 39.130 0.00 0.00 0.00 5.28
1346 1543 6.057321 ACCATTTCTGTTTAATCTCCCGTA 57.943 37.500 0.00 0.00 0.00 4.02
1347 1544 6.113411 ACCATTTCTGTTTAATCTCCCGTAG 58.887 40.000 0.00 0.00 0.00 3.51
1348 1545 6.113411 CCATTTCTGTTTAATCTCCCGTAGT 58.887 40.000 0.00 0.00 0.00 2.73
1349 1546 6.598064 CCATTTCTGTTTAATCTCCCGTAGTT 59.402 38.462 0.00 0.00 0.00 2.24
1350 1547 7.120726 CCATTTCTGTTTAATCTCCCGTAGTTT 59.879 37.037 0.00 0.00 0.00 2.66
1351 1548 7.429636 TTTCTGTTTAATCTCCCGTAGTTTG 57.570 36.000 0.00 0.00 0.00 2.93
1352 1549 5.484715 TCTGTTTAATCTCCCGTAGTTTGG 58.515 41.667 0.00 0.00 0.00 3.28
1353 1550 5.012354 TCTGTTTAATCTCCCGTAGTTTGGT 59.988 40.000 0.00 0.00 0.00 3.67
1354 1551 4.998672 TGTTTAATCTCCCGTAGTTTGGTG 59.001 41.667 0.00 0.00 0.00 4.17
1355 1552 2.781681 AATCTCCCGTAGTTTGGTGG 57.218 50.000 0.00 0.00 0.00 4.61
1356 1553 0.909623 ATCTCCCGTAGTTTGGTGGG 59.090 55.000 0.00 0.00 43.36 4.61
1357 1554 1.196104 TCTCCCGTAGTTTGGTGGGG 61.196 60.000 0.00 0.00 42.20 4.96
1358 1555 1.152074 TCCCGTAGTTTGGTGGGGA 60.152 57.895 0.00 0.00 44.50 4.81
1359 1556 0.767446 TCCCGTAGTTTGGTGGGGAA 60.767 55.000 0.00 0.00 43.77 3.97
1404 1616 2.699846 TCCCTGATTTTGCTTTGCTTGT 59.300 40.909 0.00 0.00 0.00 3.16
1547 1759 1.134226 CAGTGTGTTCGGTACCGTTC 58.866 55.000 32.16 24.56 40.74 3.95
1549 1761 1.000938 AGTGTGTTCGGTACCGTTCTC 60.001 52.381 32.16 23.93 40.74 2.87
1609 1821 3.943034 CGCGAGCGAGACGATCCT 61.943 66.667 12.58 0.00 39.19 3.24
1986 2238 5.335740 CCGACTCCTATCTGTTGCGTATATT 60.336 44.000 0.00 0.00 0.00 1.28
2078 2333 1.770294 AGCTAGCCTGTGGAGTAGAC 58.230 55.000 12.13 0.00 0.00 2.59
2118 2392 1.827344 CACTCATACACAGGAGGCTGA 59.173 52.381 0.00 0.00 36.89 4.26
2119 2393 1.827969 ACTCATACACAGGAGGCTGAC 59.172 52.381 0.00 0.00 36.89 3.51
2120 2394 1.137872 CTCATACACAGGAGGCTGACC 59.862 57.143 0.00 0.00 0.00 4.02
2129 2403 2.267006 AGGCTGACCTCGTGCATG 59.733 61.111 0.00 0.00 46.34 4.06
2382 2665 8.194769 ACTGTGGTTTTAGAATACTTTGGTTTG 58.805 33.333 0.00 0.00 0.00 2.93
2465 2749 6.912082 TGATTGATTTCACATTGGTACACTG 58.088 36.000 0.00 0.00 44.93 3.66
2475 2759 5.984926 CACATTGGTACACTGCAATTTCTTT 59.015 36.000 0.00 0.00 43.11 2.52
2554 2852 4.833390 AGTGCTCTAAGAATGGGTGTTAC 58.167 43.478 0.00 0.00 0.00 2.50
2578 2877 4.586421 TGCCAAACCATACAACTTCATCAA 59.414 37.500 0.00 0.00 0.00 2.57
2706 3084 6.494952 TCCATCTGAATATACTACTCCCTCC 58.505 44.000 0.00 0.00 0.00 4.30
2723 3101 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2724 3102 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
2725 3103 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
2726 3104 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
2727 3105 6.350277 CCTCCGTCCCATAATATAAGAGTGTC 60.350 46.154 0.00 0.00 0.00 3.67
2728 3106 6.072649 TCCGTCCCATAATATAAGAGTGTCA 58.927 40.000 0.00 0.00 0.00 3.58
2729 3107 6.551975 TCCGTCCCATAATATAAGAGTGTCAA 59.448 38.462 0.00 0.00 0.00 3.18
2730 3108 7.070198 TCCGTCCCATAATATAAGAGTGTCAAA 59.930 37.037 0.00 0.00 0.00 2.69
2731 3109 7.713507 CCGTCCCATAATATAAGAGTGTCAAAA 59.286 37.037 0.00 0.00 0.00 2.44
2732 3110 9.104965 CGTCCCATAATATAAGAGTGTCAAAAA 57.895 33.333 0.00 0.00 0.00 1.94
2735 3113 9.683069 CCCATAATATAAGAGTGTCAAAAATGC 57.317 33.333 0.00 0.00 0.00 3.56
2749 3127 9.683069 GTGTCAAAAATGCTCTTATATTATGGG 57.317 33.333 0.00 0.00 0.00 4.00
2750 3128 9.639563 TGTCAAAAATGCTCTTATATTATGGGA 57.360 29.630 0.00 0.00 0.00 4.37
2751 3129 9.899226 GTCAAAAATGCTCTTATATTATGGGAC 57.101 33.333 0.00 0.00 0.00 4.46
2752 3130 8.783093 TCAAAAATGCTCTTATATTATGGGACG 58.217 33.333 0.00 0.00 0.00 4.79
2753 3131 7.687941 AAAATGCTCTTATATTATGGGACGG 57.312 36.000 0.00 0.00 0.00 4.79
2754 3132 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2755 3133 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
2756 3134 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2757 3135 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
2762 3140 7.614583 TCTTATATTATGGGACGGAGGAACTAG 59.385 40.741 0.00 0.00 41.55 2.57
2781 3159 6.624352 ACTAGTATGCAAGCCACAAATATG 57.376 37.500 0.00 0.00 0.00 1.78
2810 3188 3.023119 TGGTAGCAATTTATGGGCACTG 58.977 45.455 0.00 0.00 0.00 3.66
2835 3213 1.535462 AGTGCGGCAACAGAATTACAC 59.465 47.619 3.23 0.00 0.00 2.90
2971 3349 6.020971 TCAACTACGTAGACATGTTGTGAT 57.979 37.500 28.74 0.00 39.03 3.06
3012 3391 3.755378 GCAGGAGGATATGTTAGCATTGG 59.245 47.826 0.00 0.00 36.58 3.16
3013 3392 4.747931 GCAGGAGGATATGTTAGCATTGGT 60.748 45.833 0.00 0.00 36.58 3.67
3045 3424 5.343593 CGTCGAGGATTAGTAGCATTTGATC 59.656 44.000 0.00 0.00 0.00 2.92
3125 3504 0.611714 AAGGCGTAATTGAGTCCCGT 59.388 50.000 0.00 0.00 0.00 5.28
3126 3505 0.108329 AGGCGTAATTGAGTCCCGTG 60.108 55.000 0.00 0.00 0.00 4.94
3146 3525 1.680249 GCCTTTGACTCTGGACCCATC 60.680 57.143 0.00 0.00 0.00 3.51
3151 3530 2.457598 TGACTCTGGACCCATCACTAC 58.542 52.381 0.00 0.00 0.00 2.73
3263 3642 2.278738 CCGCCCTATGCCCCTTTT 59.721 61.111 0.00 0.00 36.24 2.27
3397 3778 6.875195 CCCTTGAGTCGTAATTTGGTAGTTAA 59.125 38.462 0.00 0.00 0.00 2.01
3412 3794 5.363101 GGTAGTTAACCCTTACCTACATGC 58.637 45.833 12.92 0.00 43.16 4.06
3532 3914 1.621317 TGCACTCACGGTTCCTATGAA 59.379 47.619 0.00 0.00 0.00 2.57
3574 3956 0.617413 CTGCCATCCTCACAAGACCT 59.383 55.000 0.00 0.00 0.00 3.85
3616 3998 0.712979 TGAGGGACCTCTCATGGACT 59.287 55.000 18.48 0.00 43.12 3.85
3636 4018 2.926200 CTGAGTGTTATGGTTCGCTGAG 59.074 50.000 0.00 0.00 0.00 3.35
3660 4042 1.960689 CAGTGGTTTTTAGGGTGGTGG 59.039 52.381 0.00 0.00 0.00 4.61
3668 4050 0.259065 TTAGGGTGGTGGTTGTTGCA 59.741 50.000 0.00 0.00 0.00 4.08
3671 4053 2.055042 GGTGGTGGTTGTTGCACCA 61.055 57.895 0.00 0.00 45.13 4.17
3679 4061 1.001378 GGTTGTTGCACCATGTCTGTC 60.001 52.381 0.00 0.00 36.73 3.51
3682 4064 0.877071 GTTGCACCATGTCTGTCTGG 59.123 55.000 0.00 0.00 38.55 3.86
3688 4070 0.397941 CCATGTCTGTCTGGTGTGGT 59.602 55.000 0.00 0.00 0.00 4.16
3692 4074 0.608640 GTCTGTCTGGTGTGGTAGGG 59.391 60.000 0.00 0.00 0.00 3.53
3727 4122 4.161377 ACTCTTCCTCTCATCTTACCAAGC 59.839 45.833 0.00 0.00 0.00 4.01
3748 4143 3.829948 CTGTAAGATTTGTGCTTGCTGG 58.170 45.455 0.00 0.00 34.07 4.85
3855 4356 9.014297 GTATCTTTCTTCTTGGAGGAAAATTCA 57.986 33.333 6.36 0.00 37.24 2.57
3861 4362 8.567285 TCTTCTTGGAGGAAAATTCAGTTATC 57.433 34.615 0.00 0.00 0.00 1.75
3911 4412 9.439500 AATTTGTTGTTTGCTTCATATGCTAAT 57.561 25.926 0.00 0.00 0.00 1.73
3913 4414 9.920133 TTTGTTGTTTGCTTCATATGCTAATAA 57.080 25.926 0.00 0.00 0.00 1.40
3914 4415 9.920133 TTGTTGTTTGCTTCATATGCTAATAAA 57.080 25.926 0.00 0.00 31.48 1.40
3944 4445 1.787058 AGGTAACAAAAAGGGGAGGCT 59.213 47.619 0.00 0.00 41.41 4.58
3947 4448 4.045462 AGGTAACAAAAAGGGGAGGCTATT 59.955 41.667 0.00 0.00 41.41 1.73
4072 4573 9.213777 AGACATAATGAGTTAAGACTTATCCCA 57.786 33.333 0.00 0.00 35.88 4.37
4097 4598 6.782986 TCATATATCTGGCAATGCTAACCTT 58.217 36.000 4.82 0.00 0.00 3.50
4100 4601 3.281727 TCTGGCAATGCTAACCTTAGG 57.718 47.619 4.82 0.00 0.00 2.69
4101 4602 2.843730 TCTGGCAATGCTAACCTTAGGA 59.156 45.455 4.77 0.00 35.54 2.94
4102 4603 3.118261 TCTGGCAATGCTAACCTTAGGAG 60.118 47.826 4.77 0.00 34.53 3.69
4104 4605 2.172717 GGCAATGCTAACCTTAGGAGGA 59.827 50.000 4.77 0.00 46.74 3.71
4105 4606 3.181439 GGCAATGCTAACCTTAGGAGGAT 60.181 47.826 4.77 0.00 46.74 3.24
4106 4607 4.068599 GCAATGCTAACCTTAGGAGGATC 58.931 47.826 4.77 0.00 46.74 3.36
4107 4608 4.444876 GCAATGCTAACCTTAGGAGGATCA 60.445 45.833 4.77 0.00 46.74 2.92
4108 4609 5.303971 CAATGCTAACCTTAGGAGGATCAG 58.696 45.833 4.77 0.00 46.74 2.90
4109 4610 3.995636 TGCTAACCTTAGGAGGATCAGT 58.004 45.455 4.77 0.00 46.74 3.41
4110 4611 4.362677 TGCTAACCTTAGGAGGATCAGTT 58.637 43.478 4.77 0.00 46.74 3.16
4111 4612 4.406003 TGCTAACCTTAGGAGGATCAGTTC 59.594 45.833 4.77 0.00 46.74 3.01
4112 4613 4.651962 GCTAACCTTAGGAGGATCAGTTCT 59.348 45.833 4.77 0.00 46.74 3.01
4113 4614 5.129650 GCTAACCTTAGGAGGATCAGTTCTT 59.870 44.000 4.77 0.00 46.74 2.52
4114 4615 6.352308 GCTAACCTTAGGAGGATCAGTTCTTT 60.352 42.308 4.77 0.00 46.74 2.52
4115 4616 5.685520 ACCTTAGGAGGATCAGTTCTTTC 57.314 43.478 4.77 0.00 46.74 2.62
4116 4617 4.471747 ACCTTAGGAGGATCAGTTCTTTCC 59.528 45.833 4.77 0.00 46.74 3.13
4117 4618 4.141597 CCTTAGGAGGATCAGTTCTTTCCC 60.142 50.000 0.00 0.00 46.74 3.97
4118 4619 1.834263 AGGAGGATCAGTTCTTTCCCG 59.166 52.381 0.00 0.00 36.25 5.14
4119 4620 1.831736 GGAGGATCAGTTCTTTCCCGA 59.168 52.381 0.00 0.00 36.25 5.14
4120 4621 2.236395 GGAGGATCAGTTCTTTCCCGAA 59.764 50.000 0.00 0.00 36.25 4.30
4121 4622 3.263261 GAGGATCAGTTCTTTCCCGAAC 58.737 50.000 0.00 0.00 42.73 3.95
4122 4623 2.027100 AGGATCAGTTCTTTCCCGAACC 60.027 50.000 0.00 0.00 43.27 3.62
4123 4624 2.290071 GGATCAGTTCTTTCCCGAACCA 60.290 50.000 0.00 0.00 43.27 3.67
4124 4625 2.249844 TCAGTTCTTTCCCGAACCAC 57.750 50.000 0.00 0.00 43.27 4.16
4125 4626 1.766496 TCAGTTCTTTCCCGAACCACT 59.234 47.619 0.00 0.00 43.27 4.00
4126 4627 2.171870 TCAGTTCTTTCCCGAACCACTT 59.828 45.455 0.00 0.00 43.27 3.16
4127 4628 2.949644 CAGTTCTTTCCCGAACCACTTT 59.050 45.455 0.00 0.00 43.27 2.66
4128 4629 2.949644 AGTTCTTTCCCGAACCACTTTG 59.050 45.455 0.00 0.00 43.27 2.77
4129 4630 1.975660 TCTTTCCCGAACCACTTTGG 58.024 50.000 0.00 0.00 45.02 3.28
4130 4631 0.313987 CTTTCCCGAACCACTTTGGC 59.686 55.000 0.00 0.00 42.67 4.52
4131 4632 0.395862 TTTCCCGAACCACTTTGGCA 60.396 50.000 0.00 0.00 42.67 4.92
4132 4633 0.395862 TTCCCGAACCACTTTGGCAA 60.396 50.000 0.00 0.00 42.67 4.52
4133 4634 0.178975 TCCCGAACCACTTTGGCAAT 60.179 50.000 0.00 0.00 42.67 3.56
4134 4635 0.038343 CCCGAACCACTTTGGCAATG 60.038 55.000 11.20 11.20 42.67 2.82
4135 4636 0.667184 CCGAACCACTTTGGCAATGC 60.667 55.000 12.54 0.00 42.67 3.56
4136 4637 0.314935 CGAACCACTTTGGCAATGCT 59.685 50.000 12.54 0.00 42.67 3.79
4137 4638 1.539388 CGAACCACTTTGGCAATGCTA 59.461 47.619 12.54 0.00 42.67 3.49
4138 4639 2.030363 CGAACCACTTTGGCAATGCTAA 60.030 45.455 12.54 1.53 42.67 3.09
4139 4640 3.317150 GAACCACTTTGGCAATGCTAAC 58.683 45.455 2.82 0.00 42.67 2.34
4140 4641 1.618343 ACCACTTTGGCAATGCTAACC 59.382 47.619 2.82 0.00 42.67 2.85
4141 4642 1.895131 CCACTTTGGCAATGCTAACCT 59.105 47.619 2.82 0.00 0.00 3.50
4142 4643 2.299867 CCACTTTGGCAATGCTAACCTT 59.700 45.455 2.82 0.00 0.00 3.50
4143 4644 3.509575 CCACTTTGGCAATGCTAACCTTA 59.490 43.478 2.82 0.00 0.00 2.69
4144 4645 4.380867 CCACTTTGGCAATGCTAACCTTAG 60.381 45.833 2.82 1.30 0.00 2.18
4145 4646 3.763897 ACTTTGGCAATGCTAACCTTAGG 59.236 43.478 2.82 0.00 0.00 2.69
4146 4647 3.730215 TTGGCAATGCTAACCTTAGGA 57.270 42.857 4.77 0.00 35.54 2.94
4147 4648 3.281727 TGGCAATGCTAACCTTAGGAG 57.718 47.619 4.77 0.00 34.53 3.69
4149 4650 2.172717 GGCAATGCTAACCTTAGGAGGA 59.827 50.000 4.77 0.00 46.74 3.71
4150 4651 3.181439 GGCAATGCTAACCTTAGGAGGAT 60.181 47.826 4.77 0.00 46.74 3.24
4151 4652 4.068599 GCAATGCTAACCTTAGGAGGATC 58.931 47.826 4.77 0.00 46.74 3.36
4152 4653 4.444876 GCAATGCTAACCTTAGGAGGATCA 60.445 45.833 4.77 0.00 46.74 2.92
4153 4654 5.303971 CAATGCTAACCTTAGGAGGATCAG 58.696 45.833 4.77 0.00 46.74 2.90
4154 4655 3.995636 TGCTAACCTTAGGAGGATCAGT 58.004 45.455 4.77 0.00 46.74 3.41
4155 4656 4.362677 TGCTAACCTTAGGAGGATCAGTT 58.637 43.478 4.77 0.00 46.74 3.16
4156 4657 4.406003 TGCTAACCTTAGGAGGATCAGTTC 59.594 45.833 4.77 0.00 46.74 3.01
4157 4658 4.651962 GCTAACCTTAGGAGGATCAGTTCT 59.348 45.833 4.77 0.00 46.74 3.01
4158 4659 5.129650 GCTAACCTTAGGAGGATCAGTTCTT 59.870 44.000 4.77 0.00 46.74 2.52
4159 4660 6.352308 GCTAACCTTAGGAGGATCAGTTCTTT 60.352 42.308 4.77 0.00 46.74 2.52
4160 4661 5.685520 ACCTTAGGAGGATCAGTTCTTTC 57.314 43.478 4.77 0.00 46.74 2.62
4161 4662 4.471747 ACCTTAGGAGGATCAGTTCTTTCC 59.528 45.833 4.77 0.00 46.74 3.13
4162 4663 4.141597 CCTTAGGAGGATCAGTTCTTTCCC 60.142 50.000 0.00 0.00 46.74 3.97
4163 4664 1.834263 AGGAGGATCAGTTCTTTCCCG 59.166 52.381 0.00 0.00 36.25 5.14
4164 4665 1.831736 GGAGGATCAGTTCTTTCCCGA 59.168 52.381 0.00 0.00 36.25 5.14
4165 4666 2.236395 GGAGGATCAGTTCTTTCCCGAA 59.764 50.000 0.00 0.00 36.25 4.30
4166 4667 3.263261 GAGGATCAGTTCTTTCCCGAAC 58.737 50.000 0.00 0.00 42.73 3.95
4167 4668 2.027100 AGGATCAGTTCTTTCCCGAACC 60.027 50.000 0.00 0.00 43.27 3.62
4168 4669 2.290071 GGATCAGTTCTTTCCCGAACCA 60.290 50.000 0.00 0.00 43.27 3.67
4169 4670 2.249844 TCAGTTCTTTCCCGAACCAC 57.750 50.000 0.00 0.00 43.27 4.16
4170 4671 1.766496 TCAGTTCTTTCCCGAACCACT 59.234 47.619 0.00 0.00 43.27 4.00
4171 4672 2.171870 TCAGTTCTTTCCCGAACCACTT 59.828 45.455 0.00 0.00 43.27 3.16
4172 4673 2.949644 CAGTTCTTTCCCGAACCACTTT 59.050 45.455 0.00 0.00 43.27 2.66
4173 4674 2.949644 AGTTCTTTCCCGAACCACTTTG 59.050 45.455 0.00 0.00 43.27 2.77
4174 4675 1.975660 TCTTTCCCGAACCACTTTGG 58.024 50.000 0.00 0.00 45.02 3.28
4175 4676 0.313987 CTTTCCCGAACCACTTTGGC 59.686 55.000 0.00 0.00 42.67 4.52
4176 4677 0.395862 TTTCCCGAACCACTTTGGCA 60.396 50.000 0.00 0.00 42.67 4.92
4177 4678 0.395862 TTCCCGAACCACTTTGGCAA 60.396 50.000 0.00 0.00 42.67 4.52
4178 4679 0.178975 TCCCGAACCACTTTGGCAAT 60.179 50.000 0.00 0.00 42.67 3.56
4179 4680 0.038343 CCCGAACCACTTTGGCAATG 60.038 55.000 11.20 11.20 42.67 2.82
4180 4681 0.667184 CCGAACCACTTTGGCAATGC 60.667 55.000 12.54 0.00 42.67 3.56
4181 4682 0.314935 CGAACCACTTTGGCAATGCT 59.685 50.000 12.54 0.00 42.67 3.79
4182 4683 1.539388 CGAACCACTTTGGCAATGCTA 59.461 47.619 12.54 0.00 42.67 3.49
4183 4684 2.030363 CGAACCACTTTGGCAATGCTAA 60.030 45.455 12.54 1.53 42.67 3.09
4184 4685 3.317150 GAACCACTTTGGCAATGCTAAC 58.683 45.455 2.82 0.00 42.67 2.34
4185 4686 1.618343 ACCACTTTGGCAATGCTAACC 59.382 47.619 2.82 0.00 42.67 2.85
4186 4687 1.895131 CCACTTTGGCAATGCTAACCT 59.105 47.619 2.82 0.00 0.00 3.50
4187 4688 2.299867 CCACTTTGGCAATGCTAACCTT 59.700 45.455 2.82 0.00 0.00 3.50
4188 4689 3.509575 CCACTTTGGCAATGCTAACCTTA 59.490 43.478 2.82 0.00 0.00 2.69
4189 4690 4.380867 CCACTTTGGCAATGCTAACCTTAG 60.381 45.833 2.82 1.30 0.00 2.18
4190 4691 3.763897 ACTTTGGCAATGCTAACCTTAGG 59.236 43.478 2.82 0.00 0.00 2.69
4191 4692 3.730215 TTGGCAATGCTAACCTTAGGA 57.270 42.857 4.77 0.00 35.54 2.94
4192 4693 3.281727 TGGCAATGCTAACCTTAGGAG 57.718 47.619 4.77 0.00 34.53 3.69
4198 4699 5.684704 CAATGCTAACCTTAGGAGGATCAA 58.315 41.667 4.77 0.00 46.74 2.57
4205 4708 7.227711 GCTAACCTTAGGAGGATCAATTCTTTC 59.772 40.741 4.77 0.00 46.74 2.62
4211 4714 3.628032 GGAGGATCAATTCTTTCCCGAAC 59.372 47.826 0.00 0.00 36.25 3.95
4212 4715 3.621558 AGGATCAATTCTTTCCCGAACC 58.378 45.455 0.00 0.00 0.00 3.62
4223 4726 0.400213 TCCCGAACCACTTGCTGAAT 59.600 50.000 0.00 0.00 0.00 2.57
4224 4727 0.523072 CCCGAACCACTTGCTGAATG 59.477 55.000 0.00 0.00 0.00 2.67
4234 4737 2.144833 TTGCTGAATGCGCCCACTTG 62.145 55.000 4.18 0.00 46.63 3.16
4274 4777 3.118905 AGCAACCTCTCTTCACAACTC 57.881 47.619 0.00 0.00 0.00 3.01
4283 4786 1.964223 TCTTCACAACTCCGAGCTTCT 59.036 47.619 0.00 0.00 0.00 2.85
4298 4801 4.268167 CGAGCTTCTTCATCAGATCAGTTG 59.732 45.833 0.00 0.00 0.00 3.16
4301 4804 2.897436 TCTTCATCAGATCAGTTGCCG 58.103 47.619 0.00 0.00 0.00 5.69
4302 4805 1.329906 CTTCATCAGATCAGTTGCCGC 59.670 52.381 0.00 0.00 0.00 6.53
4311 4814 2.746277 AGTTGCCGCAATCCCGTC 60.746 61.111 9.46 0.00 0.00 4.79
4320 4823 1.313091 GCAATCCCGTCCCAAGGTTC 61.313 60.000 0.00 0.00 0.00 3.62
4321 4824 0.037590 CAATCCCGTCCCAAGGTTCA 59.962 55.000 0.00 0.00 0.00 3.18
4323 4826 0.546598 ATCCCGTCCCAAGGTTCATC 59.453 55.000 0.00 0.00 0.00 2.92
4326 4829 1.679032 CCCGTCCCAAGGTTCATCTTC 60.679 57.143 0.00 0.00 0.00 2.87
4335 4838 1.648467 GGTTCATCTTCCGCCACAGC 61.648 60.000 0.00 0.00 0.00 4.40
4338 4841 2.434884 ATCTTCCGCCACAGCACG 60.435 61.111 0.00 0.00 39.83 5.34
4349 4852 2.234613 ACAGCACGTGAAATGTCCG 58.765 52.632 22.23 0.00 30.19 4.79
4354 4857 1.671054 ACGTGAAATGTCCGCCCAG 60.671 57.895 0.00 0.00 0.00 4.45
4356 4859 0.390603 CGTGAAATGTCCGCCCAGTA 60.391 55.000 0.00 0.00 0.00 2.74
4365 4868 0.759959 TCCGCCCAGTAGTTGAACAA 59.240 50.000 0.00 0.00 0.00 2.83
4411 4914 6.239317 CCGGACTATCCAGTTCTTCATCAATA 60.239 42.308 0.00 0.00 35.91 1.90
4489 4992 2.076184 CGGGAAAGATAGGGGGCCA 61.076 63.158 4.39 0.00 0.00 5.36
4571 5074 1.812571 CGATGCAGTGGGTAAAAGCTT 59.187 47.619 0.00 0.00 0.00 3.74
4605 5108 5.402568 CGTTTATGTCGAATCCACCTATCTG 59.597 44.000 0.00 0.00 0.00 2.90
4606 5109 2.890808 TGTCGAATCCACCTATCTGC 57.109 50.000 0.00 0.00 0.00 4.26
4652 5155 2.198304 GACGGTCCCAATTCCAGGCT 62.198 60.000 0.00 0.00 0.00 4.58
4655 5158 0.972471 GGTCCCAATTCCAGGCTTGG 60.972 60.000 8.96 8.96 46.49 3.61
4657 5160 1.005450 GTCCCAATTCCAGGCTTGGTA 59.995 52.381 15.41 5.56 45.26 3.25
4676 5486 4.202441 GGTACTGTACGGGAACTGATCTA 58.798 47.826 11.52 0.00 38.67 1.98
4752 5566 7.810759 ACCTGTAGTGTAAAACAAACAAACAAG 59.189 33.333 0.00 0.00 29.45 3.16
4767 5581 8.442384 CAAACAAACAAGTCTTGTAATTGCTTT 58.558 29.630 21.96 18.38 44.59 3.51
4808 5846 5.399301 CGTGCTTAAGAAGTGTTTCCATTTG 59.601 40.000 6.67 0.00 33.64 2.32
4855 5893 1.873863 GGCAGTTTGGTAGCCGAAC 59.126 57.895 9.64 9.64 45.62 3.95
4865 5903 0.796927 GTAGCCGAACCAAAGCAGTC 59.203 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.818773 CCAGTACTGTTTGGGGTTAGTTG 59.181 47.826 21.18 0.00 0.00 3.16
4 5 2.224695 GCCAGTACTGTTTGGGGTTAGT 60.225 50.000 21.18 0.00 34.96 2.24
5 6 2.224670 TGCCAGTACTGTTTGGGGTTAG 60.225 50.000 21.18 3.35 34.96 2.34
6 7 1.775459 TGCCAGTACTGTTTGGGGTTA 59.225 47.619 21.18 0.00 34.96 2.85
7 8 0.553819 TGCCAGTACTGTTTGGGGTT 59.446 50.000 21.18 0.00 34.96 4.11
8 9 0.179001 GTGCCAGTACTGTTTGGGGT 60.179 55.000 21.18 0.00 34.96 4.95
9 10 1.234615 CGTGCCAGTACTGTTTGGGG 61.235 60.000 21.18 6.23 34.96 4.96
10 11 1.234615 CCGTGCCAGTACTGTTTGGG 61.235 60.000 21.18 12.85 34.96 4.12
11 12 1.234615 CCCGTGCCAGTACTGTTTGG 61.235 60.000 21.18 15.74 37.53 3.28
12 13 1.852067 GCCCGTGCCAGTACTGTTTG 61.852 60.000 21.18 7.63 0.00 2.93
13 14 1.599797 GCCCGTGCCAGTACTGTTT 60.600 57.895 21.18 0.00 0.00 2.83
14 15 2.032071 GCCCGTGCCAGTACTGTT 59.968 61.111 21.18 0.00 0.00 3.16
15 16 3.238497 TGCCCGTGCCAGTACTGT 61.238 61.111 21.18 0.00 36.33 3.55
16 17 2.434884 CTGCCCGTGCCAGTACTG 60.435 66.667 16.34 16.34 36.33 2.74
17 18 2.923035 ACTGCCCGTGCCAGTACT 60.923 61.111 0.00 0.00 36.33 2.73
18 19 2.742372 CACTGCCCGTGCCAGTAC 60.742 66.667 0.00 0.00 36.72 2.73
19 20 4.015406 CCACTGCCCGTGCCAGTA 62.015 66.667 0.00 0.00 42.42 2.74
47 48 3.697747 TAACCTCCCGCCACCACG 61.698 66.667 0.00 0.00 0.00 4.94
48 49 2.046604 GTAACCTCCCGCCACCAC 60.047 66.667 0.00 0.00 0.00 4.16
49 50 2.527123 TGTAACCTCCCGCCACCA 60.527 61.111 0.00 0.00 0.00 4.17
50 51 2.046604 GTGTAACCTCCCGCCACC 60.047 66.667 0.00 0.00 0.00 4.61
51 52 1.375523 CTGTGTAACCTCCCGCCAC 60.376 63.158 0.00 0.00 34.36 5.01
52 53 1.534476 TCTGTGTAACCTCCCGCCA 60.534 57.895 0.00 0.00 34.36 5.69
53 54 1.218316 CTCTGTGTAACCTCCCGCC 59.782 63.158 0.00 0.00 34.36 6.13
54 55 1.218316 CCTCTGTGTAACCTCCCGC 59.782 63.158 0.00 0.00 34.36 6.13
55 56 1.614241 CCCCTCTGTGTAACCTCCCG 61.614 65.000 0.00 0.00 34.36 5.14
56 57 1.911702 GCCCCTCTGTGTAACCTCCC 61.912 65.000 0.00 0.00 34.36 4.30
57 58 0.910088 AGCCCCTCTGTGTAACCTCC 60.910 60.000 0.00 0.00 34.36 4.30
58 59 0.984995 AAGCCCCTCTGTGTAACCTC 59.015 55.000 0.00 0.00 34.36 3.85
59 60 0.693049 CAAGCCCCTCTGTGTAACCT 59.307 55.000 0.00 0.00 34.36 3.50
60 61 0.322546 CCAAGCCCCTCTGTGTAACC 60.323 60.000 0.00 0.00 34.36 2.85
61 62 0.960861 GCCAAGCCCCTCTGTGTAAC 60.961 60.000 0.00 0.00 37.35 2.50
62 63 1.378762 GCCAAGCCCCTCTGTGTAA 59.621 57.895 0.00 0.00 0.00 2.41
63 64 2.602676 GGCCAAGCCCCTCTGTGTA 61.603 63.158 0.00 0.00 44.06 2.90
64 65 3.971702 GGCCAAGCCCCTCTGTGT 61.972 66.667 0.00 0.00 44.06 3.72
73 74 1.976474 TGGATTTGTCGGCCAAGCC 60.976 57.895 2.24 0.39 46.75 4.35
74 75 1.212751 GTGGATTTGTCGGCCAAGC 59.787 57.895 2.24 0.00 33.75 4.01
75 76 0.609131 AGGTGGATTTGTCGGCCAAG 60.609 55.000 2.24 0.00 33.75 3.61
76 77 0.608035 GAGGTGGATTTGTCGGCCAA 60.608 55.000 2.24 0.00 32.68 4.52
77 78 1.002624 GAGGTGGATTTGTCGGCCA 60.003 57.895 2.24 0.00 0.00 5.36
78 79 2.106683 CGAGGTGGATTTGTCGGCC 61.107 63.158 0.00 0.00 0.00 6.13
79 80 2.106683 CCGAGGTGGATTTGTCGGC 61.107 63.158 0.00 0.00 44.99 5.54
80 81 4.201951 CCGAGGTGGATTTGTCGG 57.798 61.111 0.00 0.00 45.48 4.79
81 82 2.106683 GGCCGAGGTGGATTTGTCG 61.107 63.158 0.00 0.00 42.00 4.35
82 83 1.002624 TGGCCGAGGTGGATTTGTC 60.003 57.895 0.00 0.00 42.00 3.18
83 84 1.002134 CTGGCCGAGGTGGATTTGT 60.002 57.895 0.00 0.00 42.00 2.83
84 85 0.609131 AACTGGCCGAGGTGGATTTG 60.609 55.000 0.00 0.00 42.00 2.32
85 86 0.988832 TAACTGGCCGAGGTGGATTT 59.011 50.000 0.00 0.00 42.00 2.17
86 87 0.252197 GTAACTGGCCGAGGTGGATT 59.748 55.000 0.00 0.00 42.00 3.01
87 88 0.907704 TGTAACTGGCCGAGGTGGAT 60.908 55.000 0.00 0.00 42.00 3.41
88 89 1.534476 TGTAACTGGCCGAGGTGGA 60.534 57.895 0.00 0.00 42.00 4.02
89 90 1.375523 GTGTAACTGGCCGAGGTGG 60.376 63.158 0.00 0.00 42.50 4.61
90 91 1.736645 CGTGTAACTGGCCGAGGTG 60.737 63.158 0.00 0.00 31.75 4.00
91 92 1.904865 TCGTGTAACTGGCCGAGGT 60.905 57.895 0.00 0.00 31.75 3.85
92 93 1.445582 GTCGTGTAACTGGCCGAGG 60.446 63.158 0.00 0.00 31.75 4.63
93 94 0.319211 TTGTCGTGTAACTGGCCGAG 60.319 55.000 0.00 0.00 31.75 4.63
94 95 0.598158 GTTGTCGTGTAACTGGCCGA 60.598 55.000 0.00 0.00 31.75 5.54
95 96 0.876777 TGTTGTCGTGTAACTGGCCG 60.877 55.000 0.00 0.00 31.75 6.13
96 97 1.003223 GTTGTTGTCGTGTAACTGGCC 60.003 52.381 0.00 0.00 31.75 5.36
97 98 1.937899 AGTTGTTGTCGTGTAACTGGC 59.062 47.619 0.00 0.00 32.56 4.85
98 99 3.585748 CAGTTGTTGTCGTGTAACTGG 57.414 47.619 0.00 0.00 43.73 4.00
109 110 1.525995 CCCCGCTGACAGTTGTTGT 60.526 57.895 3.99 0.00 44.55 3.32
110 111 1.227823 TCCCCGCTGACAGTTGTTG 60.228 57.895 3.99 0.00 0.00 3.33
111 112 1.071471 CTCCCCGCTGACAGTTGTT 59.929 57.895 3.99 0.00 0.00 2.83
112 113 2.743718 CTCCCCGCTGACAGTTGT 59.256 61.111 3.99 0.00 0.00 3.32
113 114 2.743928 GCTCCCCGCTGACAGTTG 60.744 66.667 3.99 0.00 35.14 3.16
138 139 4.233558 ACAAAGCCCCACCACCCC 62.234 66.667 0.00 0.00 0.00 4.95
139 140 2.917227 CACAAAGCCCCACCACCC 60.917 66.667 0.00 0.00 0.00 4.61
140 141 2.730129 ATCCACAAAGCCCCACCACC 62.730 60.000 0.00 0.00 0.00 4.61
141 142 1.228862 ATCCACAAAGCCCCACCAC 60.229 57.895 0.00 0.00 0.00 4.16
142 143 1.076549 GATCCACAAAGCCCCACCA 59.923 57.895 0.00 0.00 0.00 4.17
143 144 0.623723 TAGATCCACAAAGCCCCACC 59.376 55.000 0.00 0.00 0.00 4.61
144 145 2.019156 GCTAGATCCACAAAGCCCCAC 61.019 57.143 0.00 0.00 0.00 4.61
145 146 0.255890 GCTAGATCCACAAAGCCCCA 59.744 55.000 0.00 0.00 0.00 4.96
146 147 0.255890 TGCTAGATCCACAAAGCCCC 59.744 55.000 0.00 0.00 33.99 5.80
147 148 1.065126 ACTGCTAGATCCACAAAGCCC 60.065 52.381 0.00 0.00 33.99 5.19
148 149 2.012673 CACTGCTAGATCCACAAAGCC 58.987 52.381 0.00 0.00 33.99 4.35
149 150 2.704572 ACACTGCTAGATCCACAAAGC 58.295 47.619 0.00 0.00 35.51 3.51
150 151 3.120060 GCAACACTGCTAGATCCACAAAG 60.120 47.826 0.00 0.00 45.74 2.77
151 152 2.813754 GCAACACTGCTAGATCCACAAA 59.186 45.455 0.00 0.00 45.74 2.83
191 192 0.916086 ATGTGATTAAGCCCGGTCCA 59.084 50.000 0.00 0.00 0.00 4.02
197 198 2.102578 ACCAAGCATGTGATTAAGCCC 58.897 47.619 0.00 0.00 0.00 5.19
201 202 4.032960 ACTCCACCAAGCATGTGATTAA 57.967 40.909 0.00 0.00 35.74 1.40
230 231 8.435187 TCAAGCCATCATTTATAGATCTCACTT 58.565 33.333 0.00 0.00 0.00 3.16
237 238 5.884322 TGCCTCAAGCCATCATTTATAGAT 58.116 37.500 0.00 0.00 42.71 1.98
286 287 5.254339 CCAACCAGGCTAGAAAATTCATC 57.746 43.478 0.00 0.00 0.00 2.92
309 310 5.703592 ACTAGCGTCTCACTATAGGAGATTG 59.296 44.000 18.25 15.51 42.85 2.67
344 345 2.011947 GCATTACTCCCGGGTTGTTAC 58.988 52.381 22.86 2.10 0.00 2.50
400 401 6.916440 TGCAATATTTATGAGATGGACATGC 58.084 36.000 0.00 0.00 0.00 4.06
499 500 6.192970 ACAGAAGATTGAAAGAAGAAGGGA 57.807 37.500 0.00 0.00 0.00 4.20
503 504 9.593134 GCTAGATACAGAAGATTGAAAGAAGAA 57.407 33.333 0.00 0.00 0.00 2.52
505 506 8.203485 AGGCTAGATACAGAAGATTGAAAGAAG 58.797 37.037 0.00 0.00 0.00 2.85
506 507 8.083828 AGGCTAGATACAGAAGATTGAAAGAA 57.916 34.615 0.00 0.00 0.00 2.52
508 509 7.437862 GTGAGGCTAGATACAGAAGATTGAAAG 59.562 40.741 0.00 0.00 0.00 2.62
522 523 3.460825 AGGTTTTGGGTGAGGCTAGATA 58.539 45.455 0.00 0.00 0.00 1.98
526 527 4.146564 GTTTTAGGTTTTGGGTGAGGCTA 58.853 43.478 0.00 0.00 0.00 3.93
529 530 3.702045 TGTGTTTTAGGTTTTGGGTGAGG 59.298 43.478 0.00 0.00 0.00 3.86
594 595 4.557496 GCCATCACTGGTCTTTTCTTGAAC 60.557 45.833 0.00 0.00 45.10 3.18
627 639 3.868754 GCGTTGAGGTTCTTCCCTACAAT 60.869 47.826 0.00 0.00 34.03 2.71
631 643 0.611714 GGCGTTGAGGTTCTTCCCTA 59.388 55.000 0.00 0.00 34.03 3.53
660 702 1.128188 AGGGTTTGGTTCCTCTCGCT 61.128 55.000 0.00 0.00 0.00 4.93
708 750 8.259411 CCTTCTACTACTCTCTTGTGTAGACTA 58.741 40.741 10.83 0.00 40.66 2.59
715 757 3.440872 ACGCCTTCTACTACTCTCTTGTG 59.559 47.826 0.00 0.00 0.00 3.33
719 761 3.942748 CAGAACGCCTTCTACTACTCTCT 59.057 47.826 0.00 0.00 34.74 3.10
751 938 1.681264 CCAGAACGCCTTGTTTCCTTT 59.319 47.619 0.00 0.00 42.09 3.11
759 946 2.664851 TCACGCCAGAACGCCTTG 60.665 61.111 0.00 0.00 36.19 3.61
765 952 2.380084 TATTCCAGTCACGCCAGAAC 57.620 50.000 0.00 0.00 0.00 3.01
788 975 2.437281 AGTATACCCGGACGAAGAGAGA 59.563 50.000 0.73 0.00 0.00 3.10
800 987 7.650504 TCATCTATTTTTCGACAAGTATACCCG 59.349 37.037 0.00 0.00 0.00 5.28
835 1022 8.638873 TCTAGATCATCTATTACGGCTCAAAAA 58.361 33.333 0.00 0.00 0.00 1.94
836 1023 8.178313 TCTAGATCATCTATTACGGCTCAAAA 57.822 34.615 0.00 0.00 0.00 2.44
837 1024 7.761038 TCTAGATCATCTATTACGGCTCAAA 57.239 36.000 0.00 0.00 0.00 2.69
838 1025 7.394641 ACATCTAGATCATCTATTACGGCTCAA 59.605 37.037 1.03 0.00 0.00 3.02
839 1026 6.887002 ACATCTAGATCATCTATTACGGCTCA 59.113 38.462 1.03 0.00 0.00 4.26
840 1027 7.328277 ACATCTAGATCATCTATTACGGCTC 57.672 40.000 1.03 0.00 0.00 4.70
841 1028 8.988546 ATACATCTAGATCATCTATTACGGCT 57.011 34.615 1.03 0.00 0.00 5.52
842 1029 8.293867 GGATACATCTAGATCATCTATTACGGC 58.706 40.741 17.49 2.45 0.00 5.68
843 1030 9.343539 TGGATACATCTAGATCATCTATTACGG 57.656 37.037 17.49 1.77 46.17 4.02
890 1077 7.505585 ACTTCCTCCATTCAAAAATACTTGTCA 59.494 33.333 0.00 0.00 0.00 3.58
903 1090 6.828785 GCCTTAAAATCTACTTCCTCCATTCA 59.171 38.462 0.00 0.00 0.00 2.57
905 1092 6.129874 GGCCTTAAAATCTACTTCCTCCATT 58.870 40.000 0.00 0.00 0.00 3.16
913 1100 5.425630 CGTAGTGGGCCTTAAAATCTACTT 58.574 41.667 4.53 0.00 0.00 2.24
919 1106 2.365582 CAGCGTAGTGGGCCTTAAAAT 58.634 47.619 4.53 0.00 0.00 1.82
975 1170 3.694058 AAGAGGATGGCCAGCGCTG 62.694 63.158 30.52 30.52 36.29 5.18
1013 1210 1.001268 CATCGATCGACCGATCCAACT 60.001 52.381 22.06 0.00 46.26 3.16
1330 1527 5.121768 CACCAAACTACGGGAGATTAAACAG 59.878 44.000 0.00 0.00 0.00 3.16
1331 1528 4.998672 CACCAAACTACGGGAGATTAAACA 59.001 41.667 0.00 0.00 0.00 2.83
1338 1535 1.196104 CCCCACCAAACTACGGGAGA 61.196 60.000 0.00 0.00 41.62 3.71
1339 1536 1.196104 TCCCCACCAAACTACGGGAG 61.196 60.000 0.00 0.00 41.62 4.30
1341 1538 0.607217 GTTCCCCACCAAACTACGGG 60.607 60.000 0.00 0.00 38.52 5.28
1343 1540 1.071071 TCAGTTCCCCACCAAACTACG 59.929 52.381 0.00 0.00 34.05 3.51
1344 1541 2.943036 TCAGTTCCCCACCAAACTAC 57.057 50.000 0.00 0.00 34.05 2.73
1345 1542 3.955524 TTTCAGTTCCCCACCAAACTA 57.044 42.857 0.00 0.00 34.05 2.24
1346 1543 2.838637 TTTCAGTTCCCCACCAAACT 57.161 45.000 0.00 0.00 36.16 2.66
1347 1544 2.037121 CCATTTCAGTTCCCCACCAAAC 59.963 50.000 0.00 0.00 0.00 2.93
1348 1545 2.324541 CCATTTCAGTTCCCCACCAAA 58.675 47.619 0.00 0.00 0.00 3.28
1349 1546 1.219213 ACCATTTCAGTTCCCCACCAA 59.781 47.619 0.00 0.00 0.00 3.67
1350 1547 0.856982 ACCATTTCAGTTCCCCACCA 59.143 50.000 0.00 0.00 0.00 4.17
1351 1548 1.893137 GAACCATTTCAGTTCCCCACC 59.107 52.381 0.00 0.00 38.12 4.61
1352 1549 2.820197 GAGAACCATTTCAGTTCCCCAC 59.180 50.000 0.25 0.00 43.80 4.61
1353 1550 2.225017 GGAGAACCATTTCAGTTCCCCA 60.225 50.000 0.00 0.00 43.80 4.96
1354 1551 2.041755 AGGAGAACCATTTCAGTTCCCC 59.958 50.000 0.25 0.00 43.80 4.81
1355 1552 3.084786 CAGGAGAACCATTTCAGTTCCC 58.915 50.000 0.25 2.50 43.80 3.97
1356 1553 4.021102 TCAGGAGAACCATTTCAGTTCC 57.979 45.455 0.25 0.00 43.80 3.62
1357 1554 5.495640 AGATCAGGAGAACCATTTCAGTTC 58.504 41.667 0.00 0.00 43.22 3.01
1358 1555 5.511386 AGATCAGGAGAACCATTTCAGTT 57.489 39.130 0.00 0.00 38.94 3.16
1359 1556 5.222007 ACAAGATCAGGAGAACCATTTCAGT 60.222 40.000 0.00 0.00 38.94 3.41
1426 1638 1.676014 GGCGTTACATCCTCAAGCAGT 60.676 52.381 0.00 0.00 0.00 4.40
1457 1669 4.065281 CGTCTCCGCCCGGAACTT 62.065 66.667 0.73 0.00 44.66 2.66
1526 1738 0.963962 ACGGTACCGAACACACTGAT 59.036 50.000 39.52 11.25 42.83 2.90
1547 1759 1.136197 GTCGATGGTATCTCTCGCGAG 60.136 57.143 30.03 30.03 38.67 5.03
1549 1761 0.869068 AGTCGATGGTATCTCTCGCG 59.131 55.000 0.00 0.00 32.62 5.87
1560 1772 1.335182 AGACGCATCTGTAGTCGATGG 59.665 52.381 0.00 0.00 38.88 3.51
1609 1821 2.475155 ACCTTGGAGCTGATGATCTGA 58.525 47.619 3.33 0.00 0.00 3.27
1735 1978 2.781681 AGAAACCACAGTATTCCCGG 57.218 50.000 0.00 0.00 0.00 5.73
2078 2333 1.331756 GTGTGCTTCAGTGACCAACAG 59.668 52.381 0.00 0.00 0.00 3.16
2118 2392 4.415150 CCCTGCCATGCACGAGGT 62.415 66.667 0.00 0.00 33.79 3.85
2120 2394 4.790962 AGCCCTGCCATGCACGAG 62.791 66.667 0.00 0.00 33.79 4.18
2320 2602 5.007682 GGGCAACAAATACTCTGGTTTCTA 58.992 41.667 0.00 0.00 39.74 2.10
2382 2665 3.509967 AGTTTGGCAGTATAGTTTTGGGC 59.490 43.478 0.00 0.00 0.00 5.36
2554 2852 4.218200 TGATGAAGTTGTATGGTTTGGCAG 59.782 41.667 0.00 0.00 0.00 4.85
2587 2886 6.566141 ACAAAATTTAAACAAGCGTACCACT 58.434 32.000 0.00 0.00 0.00 4.00
2591 2890 7.498225 CCATGACAAAATTTAAACAAGCGTAC 58.502 34.615 0.00 0.00 0.00 3.67
2677 3055 8.527810 GGGAGTAGTATATTCAGATGGAGAAAG 58.472 40.741 0.00 0.00 0.00 2.62
2681 3059 6.605594 GGAGGGAGTAGTATATTCAGATGGAG 59.394 46.154 0.00 0.00 0.00 3.86
2706 3084 8.657074 TTTTGACACTCTTATATTATGGGACG 57.343 34.615 0.00 0.00 0.00 4.79
2723 3101 9.683069 CCCATAATATAAGAGCATTTTTGACAC 57.317 33.333 0.00 0.00 0.00 3.67
2724 3102 9.639563 TCCCATAATATAAGAGCATTTTTGACA 57.360 29.630 0.00 0.00 0.00 3.58
2725 3103 9.899226 GTCCCATAATATAAGAGCATTTTTGAC 57.101 33.333 0.00 0.00 0.00 3.18
2726 3104 8.783093 CGTCCCATAATATAAGAGCATTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
2727 3105 8.023128 CCGTCCCATAATATAAGAGCATTTTTG 58.977 37.037 0.00 0.00 0.00 2.44
2728 3106 7.942341 TCCGTCCCATAATATAAGAGCATTTTT 59.058 33.333 0.00 0.00 0.00 1.94
2729 3107 7.458397 TCCGTCCCATAATATAAGAGCATTTT 58.542 34.615 0.00 0.00 0.00 1.82
2730 3108 7.016153 TCCGTCCCATAATATAAGAGCATTT 57.984 36.000 0.00 0.00 0.00 2.32
2731 3109 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
2732 3110 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
2733 3111 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
2734 3112 4.710375 TCCTCCGTCCCATAATATAAGAGC 59.290 45.833 0.00 0.00 0.00 4.09
2735 3113 6.437793 AGTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
2736 3114 6.320518 AGTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
2737 3115 6.607004 AGTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
2738 3116 7.243824 ACTAGTTCCTCCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
2739 3117 6.797707 ACTAGTTCCTCCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
2740 3118 5.652324 ACTAGTTCCTCCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
2741 3119 5.070823 ACTAGTTCCTCCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
2742 3120 3.924922 ACTAGTTCCTCCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
2743 3121 3.393426 ACTAGTTCCTCCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2744 3122 4.404640 CATACTAGTTCCTCCGTCCCATA 58.595 47.826 0.00 0.00 0.00 2.74
2745 3123 3.231818 CATACTAGTTCCTCCGTCCCAT 58.768 50.000 0.00 0.00 0.00 4.00
2746 3124 2.662866 CATACTAGTTCCTCCGTCCCA 58.337 52.381 0.00 0.00 0.00 4.37
2747 3125 1.340568 GCATACTAGTTCCTCCGTCCC 59.659 57.143 0.00 0.00 0.00 4.46
2748 3126 2.029623 TGCATACTAGTTCCTCCGTCC 58.970 52.381 0.00 0.00 0.00 4.79
2749 3127 3.707793 CTTGCATACTAGTTCCTCCGTC 58.292 50.000 0.00 0.00 0.00 4.79
2750 3128 2.159085 GCTTGCATACTAGTTCCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
2751 3129 2.474816 GCTTGCATACTAGTTCCTCCG 58.525 52.381 0.00 0.00 0.00 4.63
2752 3130 2.170607 TGGCTTGCATACTAGTTCCTCC 59.829 50.000 0.00 0.00 0.00 4.30
2753 3131 3.198872 GTGGCTTGCATACTAGTTCCTC 58.801 50.000 0.00 0.00 0.00 3.71
2754 3132 2.571653 TGTGGCTTGCATACTAGTTCCT 59.428 45.455 0.00 0.00 0.00 3.36
2755 3133 2.985896 TGTGGCTTGCATACTAGTTCC 58.014 47.619 0.00 0.00 0.00 3.62
2756 3134 5.567138 ATTTGTGGCTTGCATACTAGTTC 57.433 39.130 0.00 0.00 0.00 3.01
2757 3135 6.603201 ACATATTTGTGGCTTGCATACTAGTT 59.397 34.615 0.00 0.00 33.85 2.24
2810 3188 1.785041 TTCTGTTGCCGCACTGCTTC 61.785 55.000 0.00 0.00 0.00 3.86
2835 3213 2.620251 TGGGGAGCATCGATAACTTG 57.380 50.000 0.00 0.00 34.37 3.16
3012 3391 1.101331 AATCCTCGACGTGGACCTAC 58.899 55.000 20.10 0.00 36.30 3.18
3013 3392 2.092753 ACTAATCCTCGACGTGGACCTA 60.093 50.000 20.10 13.32 36.30 3.08
3045 3424 9.778993 CTTCAGGTTGAACTCAAAATGTATATG 57.221 33.333 0.00 0.00 37.63 1.78
3089 3468 3.181506 CGCCTTTGCTAAAGTCTTCATCC 60.182 47.826 7.53 0.00 36.77 3.51
3125 3504 1.059584 TGGGTCCAGAGTCAAAGGCA 61.060 55.000 0.00 0.00 0.00 4.75
3126 3505 0.329596 ATGGGTCCAGAGTCAAAGGC 59.670 55.000 0.00 0.00 0.00 4.35
3146 3525 3.795826 GCCAACTAGGTAGCATCGTAGTG 60.796 52.174 11.98 8.00 38.47 2.74
3151 3530 1.409064 TGAGCCAACTAGGTAGCATCG 59.591 52.381 0.00 0.00 40.61 3.84
3263 3642 2.161855 CCAGCAGATACTTTGCCAACA 58.838 47.619 0.00 0.00 42.48 3.33
3344 3723 5.105146 GGAGCCATCATCTCCGACTAATATT 60.105 44.000 0.00 0.00 40.51 1.28
3369 3748 4.070009 ACCAAATTACGACTCAAGGGAAC 58.930 43.478 0.00 0.00 0.00 3.62
3397 3778 0.458669 CGTCGCATGTAGGTAAGGGT 59.541 55.000 0.00 0.00 0.00 4.34
3412 3794 4.152402 ACCAAAAACTCTTCATCATCGTCG 59.848 41.667 0.00 0.00 0.00 5.12
3471 3853 5.279306 GGGTGTTGTAGAGTAACATGAGTGA 60.279 44.000 0.00 0.00 39.88 3.41
3532 3914 5.307196 AGTCCATGTAACCTTCACTTGTAGT 59.693 40.000 0.00 0.00 0.00 2.73
3616 3998 2.299013 ACTCAGCGAACCATAACACTCA 59.701 45.455 0.00 0.00 0.00 3.41
3636 4018 4.037089 CACCACCCTAAAAACCACTGTAAC 59.963 45.833 0.00 0.00 0.00 2.50
3648 4030 1.342076 TGCAACAACCACCACCCTAAA 60.342 47.619 0.00 0.00 0.00 1.85
3649 4031 0.259065 TGCAACAACCACCACCCTAA 59.741 50.000 0.00 0.00 0.00 2.69
3650 4032 0.466555 GTGCAACAACCACCACCCTA 60.467 55.000 0.00 0.00 36.32 3.53
3652 4034 2.811799 GTGCAACAACCACCACCC 59.188 61.111 0.00 0.00 36.32 4.61
3660 4042 1.949525 AGACAGACATGGTGCAACAAC 59.050 47.619 9.38 3.42 39.98 3.32
3671 4053 1.902508 CCTACCACACCAGACAGACAT 59.097 52.381 0.00 0.00 0.00 3.06
3679 4061 1.077501 CCATGCCCTACCACACCAG 60.078 63.158 0.00 0.00 0.00 4.00
3682 4064 2.440247 GGCCATGCCCTACCACAC 60.440 66.667 0.00 0.00 44.06 3.82
3692 4074 0.464554 GGAAGAGTACTGGGCCATGC 60.465 60.000 6.72 0.93 0.00 4.06
3727 4122 3.503363 TCCAGCAAGCACAAATCTTACAG 59.497 43.478 0.00 0.00 0.00 2.74
3735 4130 2.483363 CCAAACATCCAGCAAGCACAAA 60.483 45.455 0.00 0.00 0.00 2.83
3748 4143 6.743575 AGCACAACTCTAATACCAAACATC 57.256 37.500 0.00 0.00 0.00 3.06
3855 4356 6.375174 TGTGCATCAATTTACAGCAGATAACT 59.625 34.615 0.00 0.00 35.66 2.24
3861 4362 6.127810 AGTATGTGCATCAATTTACAGCAG 57.872 37.500 0.00 0.00 35.66 4.24
3912 4413 9.119418 CCCTTTTTGTTACCTTTGAATGATTTT 57.881 29.630 0.00 0.00 0.00 1.82
3913 4414 7.719193 CCCCTTTTTGTTACCTTTGAATGATTT 59.281 33.333 0.00 0.00 0.00 2.17
3914 4415 7.071824 TCCCCTTTTTGTTACCTTTGAATGATT 59.928 33.333 0.00 0.00 0.00 2.57
4059 4560 8.928448 GCCAGATATATGATGGGATAAGTCTTA 58.072 37.037 13.14 0.00 34.52 2.10
4064 4565 7.040617 GCATTGCCAGATATATGATGGGATAAG 60.041 40.741 13.14 6.62 34.15 1.73
4066 4567 6.102174 AGCATTGCCAGATATATGATGGGATA 59.898 38.462 4.70 4.90 34.15 2.59
4069 4570 4.533815 AGCATTGCCAGATATATGATGGG 58.466 43.478 4.70 1.40 34.52 4.00
4072 4573 6.966751 AGGTTAGCATTGCCAGATATATGAT 58.033 36.000 4.70 0.00 0.00 2.45
4097 4598 3.031736 CGGGAAAGAACTGATCCTCCTA 58.968 50.000 0.00 0.00 33.12 2.94
4100 4601 3.263261 GTTCGGGAAAGAACTGATCCTC 58.737 50.000 2.95 0.00 45.07 3.71
4101 4602 2.027100 GGTTCGGGAAAGAACTGATCCT 60.027 50.000 9.31 0.00 46.99 3.24
4102 4603 2.290071 TGGTTCGGGAAAGAACTGATCC 60.290 50.000 9.31 0.00 46.99 3.36
4103 4604 2.742589 GTGGTTCGGGAAAGAACTGATC 59.257 50.000 9.31 0.00 46.99 2.92
4104 4605 2.372172 AGTGGTTCGGGAAAGAACTGAT 59.628 45.455 9.31 0.00 46.99 2.90
4105 4606 1.766496 AGTGGTTCGGGAAAGAACTGA 59.234 47.619 9.31 0.00 46.99 3.41
4106 4607 2.256117 AGTGGTTCGGGAAAGAACTG 57.744 50.000 9.31 0.00 46.99 3.16
4107 4608 2.949644 CAAAGTGGTTCGGGAAAGAACT 59.050 45.455 9.31 0.00 46.99 3.01
4109 4610 2.303175 CCAAAGTGGTTCGGGAAAGAA 58.697 47.619 0.00 0.00 31.35 2.52
4110 4611 1.975660 CCAAAGTGGTTCGGGAAAGA 58.024 50.000 0.00 0.00 31.35 2.52
4111 4612 0.313987 GCCAAAGTGGTTCGGGAAAG 59.686 55.000 0.00 0.00 40.46 2.62
4112 4613 0.395862 TGCCAAAGTGGTTCGGGAAA 60.396 50.000 0.00 0.00 40.46 3.13
4113 4614 0.395862 TTGCCAAAGTGGTTCGGGAA 60.396 50.000 0.00 0.00 40.46 3.97
4114 4615 0.178975 ATTGCCAAAGTGGTTCGGGA 60.179 50.000 0.00 0.00 40.46 5.14
4115 4616 0.038343 CATTGCCAAAGTGGTTCGGG 60.038 55.000 0.00 0.00 40.46 5.14
4116 4617 0.667184 GCATTGCCAAAGTGGTTCGG 60.667 55.000 0.00 0.00 40.46 4.30
4117 4618 0.314935 AGCATTGCCAAAGTGGTTCG 59.685 50.000 4.70 0.00 40.46 3.95
4118 4619 3.317150 GTTAGCATTGCCAAAGTGGTTC 58.683 45.455 4.70 0.00 40.46 3.62
4119 4620 2.037121 GGTTAGCATTGCCAAAGTGGTT 59.963 45.455 4.70 0.00 40.46 3.67
4120 4621 1.618343 GGTTAGCATTGCCAAAGTGGT 59.382 47.619 4.70 0.00 40.46 4.16
4121 4622 1.895131 AGGTTAGCATTGCCAAAGTGG 59.105 47.619 4.70 0.00 41.55 4.00
4122 4623 3.665745 AAGGTTAGCATTGCCAAAGTG 57.334 42.857 4.70 0.00 0.00 3.16
4123 4624 3.763897 CCTAAGGTTAGCATTGCCAAAGT 59.236 43.478 4.70 0.00 0.00 2.66
4124 4625 4.016444 TCCTAAGGTTAGCATTGCCAAAG 58.984 43.478 4.70 0.00 0.00 2.77
4125 4626 4.016444 CTCCTAAGGTTAGCATTGCCAAA 58.984 43.478 4.70 0.00 0.00 3.28
4126 4627 3.620488 CTCCTAAGGTTAGCATTGCCAA 58.380 45.455 4.70 0.00 0.00 4.52
4127 4628 2.092429 CCTCCTAAGGTTAGCATTGCCA 60.092 50.000 4.70 0.00 37.94 4.92
4128 4629 2.172717 TCCTCCTAAGGTTAGCATTGCC 59.827 50.000 4.70 0.00 43.82 4.52
4129 4630 3.560636 TCCTCCTAAGGTTAGCATTGC 57.439 47.619 0.00 0.00 43.82 3.56
4130 4631 5.163258 ACTGATCCTCCTAAGGTTAGCATTG 60.163 44.000 0.00 0.00 43.82 2.82
4131 4632 4.971924 ACTGATCCTCCTAAGGTTAGCATT 59.028 41.667 0.00 0.00 43.82 3.56
4132 4633 4.561752 ACTGATCCTCCTAAGGTTAGCAT 58.438 43.478 0.00 0.00 43.82 3.79
4133 4634 3.995636 ACTGATCCTCCTAAGGTTAGCA 58.004 45.455 0.00 0.00 43.82 3.49
4134 4635 4.651962 AGAACTGATCCTCCTAAGGTTAGC 59.348 45.833 0.00 0.00 43.82 3.09
4135 4636 6.800072 AAGAACTGATCCTCCTAAGGTTAG 57.200 41.667 0.00 0.00 43.82 2.34
4136 4637 6.156429 GGAAAGAACTGATCCTCCTAAGGTTA 59.844 42.308 0.00 0.00 43.82 2.85
4137 4638 5.045505 GGAAAGAACTGATCCTCCTAAGGTT 60.046 44.000 0.00 0.00 43.82 3.50
4138 4639 4.471747 GGAAAGAACTGATCCTCCTAAGGT 59.528 45.833 0.00 0.00 43.82 3.50
4139 4640 4.141597 GGGAAAGAACTGATCCTCCTAAGG 60.142 50.000 0.00 0.00 44.89 2.69
4140 4641 4.442192 CGGGAAAGAACTGATCCTCCTAAG 60.442 50.000 0.00 0.00 33.12 2.18
4141 4642 3.451178 CGGGAAAGAACTGATCCTCCTAA 59.549 47.826 0.00 0.00 33.12 2.69
4142 4643 3.031736 CGGGAAAGAACTGATCCTCCTA 58.968 50.000 0.00 0.00 33.12 2.94
4143 4644 1.834263 CGGGAAAGAACTGATCCTCCT 59.166 52.381 0.00 0.00 33.12 3.69
4144 4645 1.831736 TCGGGAAAGAACTGATCCTCC 59.168 52.381 0.00 0.00 33.61 4.30
4145 4646 3.263261 GTTCGGGAAAGAACTGATCCTC 58.737 50.000 2.95 0.00 45.07 3.71
4146 4647 2.027100 GGTTCGGGAAAGAACTGATCCT 60.027 50.000 9.31 0.00 46.99 3.24
4147 4648 2.290071 TGGTTCGGGAAAGAACTGATCC 60.290 50.000 9.31 0.00 46.99 3.36
4148 4649 2.742589 GTGGTTCGGGAAAGAACTGATC 59.257 50.000 9.31 0.00 46.99 2.92
4149 4650 2.372172 AGTGGTTCGGGAAAGAACTGAT 59.628 45.455 9.31 0.00 46.99 2.90
4150 4651 1.766496 AGTGGTTCGGGAAAGAACTGA 59.234 47.619 9.31 0.00 46.99 3.41
4151 4652 2.256117 AGTGGTTCGGGAAAGAACTG 57.744 50.000 9.31 0.00 46.99 3.16
4152 4653 2.949644 CAAAGTGGTTCGGGAAAGAACT 59.050 45.455 9.31 0.00 46.99 3.01
4154 4655 2.303175 CCAAAGTGGTTCGGGAAAGAA 58.697 47.619 0.00 0.00 31.35 2.52
4155 4656 1.975660 CCAAAGTGGTTCGGGAAAGA 58.024 50.000 0.00 0.00 31.35 2.52
4156 4657 0.313987 GCCAAAGTGGTTCGGGAAAG 59.686 55.000 0.00 0.00 40.46 2.62
4157 4658 0.395862 TGCCAAAGTGGTTCGGGAAA 60.396 50.000 0.00 0.00 40.46 3.13
4158 4659 0.395862 TTGCCAAAGTGGTTCGGGAA 60.396 50.000 0.00 0.00 40.46 3.97
4159 4660 0.178975 ATTGCCAAAGTGGTTCGGGA 60.179 50.000 0.00 0.00 40.46 5.14
4160 4661 0.038343 CATTGCCAAAGTGGTTCGGG 60.038 55.000 0.00 0.00 40.46 5.14
4161 4662 0.667184 GCATTGCCAAAGTGGTTCGG 60.667 55.000 0.00 0.00 40.46 4.30
4162 4663 0.314935 AGCATTGCCAAAGTGGTTCG 59.685 50.000 4.70 0.00 40.46 3.95
4163 4664 3.317150 GTTAGCATTGCCAAAGTGGTTC 58.683 45.455 4.70 0.00 40.46 3.62
4164 4665 2.037121 GGTTAGCATTGCCAAAGTGGTT 59.963 45.455 4.70 0.00 40.46 3.67
4165 4666 1.618343 GGTTAGCATTGCCAAAGTGGT 59.382 47.619 4.70 0.00 40.46 4.16
4166 4667 1.895131 AGGTTAGCATTGCCAAAGTGG 59.105 47.619 4.70 0.00 41.55 4.00
4167 4668 3.665745 AAGGTTAGCATTGCCAAAGTG 57.334 42.857 4.70 0.00 0.00 3.16
4168 4669 3.763897 CCTAAGGTTAGCATTGCCAAAGT 59.236 43.478 4.70 0.00 0.00 2.66
4169 4670 4.016444 TCCTAAGGTTAGCATTGCCAAAG 58.984 43.478 4.70 0.00 0.00 2.77
4170 4671 4.016444 CTCCTAAGGTTAGCATTGCCAAA 58.984 43.478 4.70 0.00 0.00 3.28
4171 4672 3.620488 CTCCTAAGGTTAGCATTGCCAA 58.380 45.455 4.70 0.00 0.00 4.52
4172 4673 2.092429 CCTCCTAAGGTTAGCATTGCCA 60.092 50.000 4.70 0.00 37.94 4.92
4173 4674 2.172717 TCCTCCTAAGGTTAGCATTGCC 59.827 50.000 4.70 0.00 43.82 4.52
4174 4675 3.560636 TCCTCCTAAGGTTAGCATTGC 57.439 47.619 0.00 0.00 43.82 3.56
4175 4676 5.296151 TGATCCTCCTAAGGTTAGCATTG 57.704 43.478 0.00 0.00 43.82 2.82
4176 4677 5.975988 TTGATCCTCCTAAGGTTAGCATT 57.024 39.130 0.00 0.00 43.82 3.56
4177 4678 6.331307 AGAATTGATCCTCCTAAGGTTAGCAT 59.669 38.462 0.00 0.00 43.82 3.79
4178 4679 5.667626 AGAATTGATCCTCCTAAGGTTAGCA 59.332 40.000 0.00 0.00 43.82 3.49
4179 4680 6.181206 AGAATTGATCCTCCTAAGGTTAGC 57.819 41.667 0.00 0.00 43.82 3.09
4180 4681 7.717436 GGAAAGAATTGATCCTCCTAAGGTTAG 59.283 40.741 0.00 0.00 43.82 2.34
4181 4682 7.366551 GGGAAAGAATTGATCCTCCTAAGGTTA 60.367 40.741 0.00 0.00 43.82 2.85
4182 4683 6.427441 GGAAAGAATTGATCCTCCTAAGGTT 58.573 40.000 0.00 0.00 43.82 3.50
4183 4684 5.103898 GGGAAAGAATTGATCCTCCTAAGGT 60.104 44.000 0.00 0.00 43.82 3.50
4184 4685 5.380900 GGGAAAGAATTGATCCTCCTAAGG 58.619 45.833 0.00 0.00 44.89 2.69
4185 4686 5.059833 CGGGAAAGAATTGATCCTCCTAAG 58.940 45.833 0.00 0.00 33.12 2.18
4186 4687 4.719773 TCGGGAAAGAATTGATCCTCCTAA 59.280 41.667 0.00 0.00 33.12 2.69
4187 4688 4.295201 TCGGGAAAGAATTGATCCTCCTA 58.705 43.478 0.00 0.00 33.12 2.94
4188 4689 3.115390 TCGGGAAAGAATTGATCCTCCT 58.885 45.455 0.00 0.00 33.12 3.69
4189 4690 3.560636 TCGGGAAAGAATTGATCCTCC 57.439 47.619 0.00 0.00 33.61 4.30
4190 4691 3.628032 GGTTCGGGAAAGAATTGATCCTC 59.372 47.826 0.00 0.00 33.61 3.71
4191 4692 3.010138 TGGTTCGGGAAAGAATTGATCCT 59.990 43.478 0.00 0.00 33.61 3.24
4192 4693 3.128764 GTGGTTCGGGAAAGAATTGATCC 59.871 47.826 0.00 0.00 32.25 3.36
4193 4694 4.010349 AGTGGTTCGGGAAAGAATTGATC 58.990 43.478 0.00 0.00 32.25 2.92
4198 4699 1.886542 GCAAGTGGTTCGGGAAAGAAT 59.113 47.619 0.00 0.00 32.25 2.40
4205 4708 0.523072 CATTCAGCAAGTGGTTCGGG 59.477 55.000 0.00 0.00 0.00 5.14
4211 4714 2.180017 GGCGCATTCAGCAAGTGG 59.820 61.111 10.83 0.00 46.13 4.00
4212 4715 2.180017 GGGCGCATTCAGCAAGTG 59.820 61.111 10.83 0.00 46.13 3.16
4223 4726 2.499214 AAAAAGTCAAGTGGGCGCA 58.501 47.368 10.83 0.00 0.00 6.09
4242 4745 7.344612 TGAAGAGAGGTTGCTATATCAAACCTA 59.655 37.037 13.75 0.00 34.30 3.08
4254 4757 2.224402 GGAGTTGTGAAGAGAGGTTGCT 60.224 50.000 0.00 0.00 0.00 3.91
4256 4759 2.035961 TCGGAGTTGTGAAGAGAGGTTG 59.964 50.000 0.00 0.00 0.00 3.77
4257 4760 2.297597 CTCGGAGTTGTGAAGAGAGGTT 59.702 50.000 0.00 0.00 0.00 3.50
4259 4762 1.403514 GCTCGGAGTTGTGAAGAGAGG 60.404 57.143 6.90 0.00 0.00 3.69
4260 4763 1.543802 AGCTCGGAGTTGTGAAGAGAG 59.456 52.381 6.90 0.00 0.00 3.20
4274 4777 3.181477 ACTGATCTGATGAAGAAGCTCGG 60.181 47.826 6.60 0.00 38.79 4.63
4283 4786 1.338960 TGCGGCAACTGATCTGATGAA 60.339 47.619 13.03 0.00 0.00 2.57
4301 4804 1.304134 AACCTTGGGACGGGATTGC 60.304 57.895 0.00 0.00 0.00 3.56
4302 4805 0.037590 TGAACCTTGGGACGGGATTG 59.962 55.000 0.00 0.00 0.00 2.67
4311 4814 1.032114 GGCGGAAGATGAACCTTGGG 61.032 60.000 0.00 0.00 0.00 4.12
4320 4823 2.743752 CGTGCTGTGGCGGAAGATG 61.744 63.158 0.00 0.00 42.25 2.90
4321 4824 2.434884 CGTGCTGTGGCGGAAGAT 60.435 61.111 0.00 0.00 42.25 2.40
4323 4826 3.716006 CACGTGCTGTGGCGGAAG 61.716 66.667 0.82 0.00 45.21 3.46
4335 4838 1.911293 CTGGGCGGACATTTCACGTG 61.911 60.000 9.94 9.94 0.00 4.49
4338 4841 1.338769 ACTACTGGGCGGACATTTCAC 60.339 52.381 0.00 0.00 0.00 3.18
4346 4849 0.759959 TTGTTCAACTACTGGGCGGA 59.240 50.000 0.00 0.00 0.00 5.54
4348 4851 1.878953 AGTTGTTCAACTACTGGGCG 58.121 50.000 15.30 0.00 33.15 6.13
4349 4852 4.213482 CAGTAAGTTGTTCAACTACTGGGC 59.787 45.833 25.61 13.81 34.57 5.36
4354 4857 5.050295 GGAGCACAGTAAGTTGTTCAACTAC 60.050 44.000 16.84 14.32 31.72 2.73
4356 4859 3.877508 GGAGCACAGTAAGTTGTTCAACT 59.122 43.478 11.75 11.75 33.76 3.16
4365 4868 1.435256 ACCCAAGGAGCACAGTAAGT 58.565 50.000 0.00 0.00 0.00 2.24
4368 4871 1.272807 GGTACCCAAGGAGCACAGTA 58.727 55.000 0.00 0.00 0.00 2.74
4571 5074 3.987547 TCGACATAAACGTGGGTAAACA 58.012 40.909 0.00 0.00 0.00 2.83
4605 5108 2.224402 CCCCTCAATAGCTCCTACTTGC 60.224 54.545 0.00 0.00 0.00 4.01
4606 5109 2.224402 GCCCCTCAATAGCTCCTACTTG 60.224 54.545 0.00 0.00 0.00 3.16
4652 5155 2.596346 TCAGTTCCCGTACAGTACCAA 58.404 47.619 5.07 0.00 0.00 3.67
4655 5158 4.637534 TGTAGATCAGTTCCCGTACAGTAC 59.362 45.833 0.00 0.00 0.00 2.73
4657 5160 3.693807 TGTAGATCAGTTCCCGTACAGT 58.306 45.455 0.00 0.00 0.00 3.55
4676 5486 0.172803 GACATACTTCCGCCGTCTGT 59.827 55.000 0.00 0.00 0.00 3.41
4762 5576 7.908082 GCACGTTATTATATTCTTGTCAAAGCA 59.092 33.333 0.00 0.00 33.06 3.91
4865 5903 8.981647 AAGATAACTTTAGCAACAAATGCAAAG 58.018 29.630 16.46 16.46 44.99 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.