Multiple sequence alignment - TraesCS3D01G116500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G116500 chr3D 100.000 3890 0 0 1 3890 69908814 69904925 0.000000e+00 7184.0
1 TraesCS3D01G116500 chr3D 93.732 2058 102 13 632 2685 70228376 70230410 0.000000e+00 3061.0
2 TraesCS3D01G116500 chr3D 92.139 547 28 9 883 1428 69915667 69915135 0.000000e+00 758.0
3 TraesCS3D01G116500 chr3D 86.971 614 74 6 1 610 69918151 69917540 0.000000e+00 686.0
4 TraesCS3D01G116500 chr3D 96.029 277 11 0 1425 1701 69913632 69913356 5.930000e-123 451.0
5 TraesCS3D01G116500 chr3D 89.571 163 10 4 718 880 69917376 69917221 2.370000e-47 200.0
6 TraesCS3D01G116500 chr3D 91.176 136 11 1 3714 3849 365000830 365000964 2.390000e-42 183.0
7 TraesCS3D01G116500 chr3D 90.000 140 12 2 3706 3845 43217893 43217756 3.090000e-41 180.0
8 TraesCS3D01G116500 chr3D 82.734 139 12 6 2841 2978 70230486 70230613 3.180000e-21 113.0
9 TraesCS3D01G116500 chr3D 84.507 71 10 1 2741 2811 17862610 17862541 6.970000e-08 69.4
10 TraesCS3D01G116500 chr3B 91.807 2197 113 29 879 3050 116080681 116082835 0.000000e+00 2998.0
11 TraesCS3D01G116500 chr3B 92.833 2051 88 24 707 2739 116010687 116008678 0.000000e+00 2918.0
12 TraesCS3D01G116500 chr3B 83.061 490 27 14 2841 3322 116008620 116008179 1.010000e-105 394.0
13 TraesCS3D01G116500 chr3B 91.111 135 12 0 3709 3843 236361941 236362075 2.390000e-42 183.0
14 TraesCS3D01G116500 chr3B 85.106 188 9 3 3348 3516 116008182 116007995 1.440000e-39 174.0
15 TraesCS3D01G116500 chr3B 87.692 65 8 0 2746 2810 757951839 757951903 4.170000e-10 76.8
16 TraesCS3D01G116500 chr3A 91.639 2129 106 37 612 2737 81483981 81481922 0.000000e+00 2880.0
17 TraesCS3D01G116500 chr3A 91.572 2112 121 25 958 3050 81662788 81664861 0.000000e+00 2861.0
18 TraesCS3D01G116500 chr3A 90.566 371 14 7 3016 3386 81481736 81481387 4.550000e-129 472.0
19 TraesCS3D01G116500 chr3A 80.315 254 25 7 357 610 81658396 81658624 6.680000e-38 169.0
20 TraesCS3D01G116500 chr3A 80.000 200 24 8 708 903 81662578 81662765 2.440000e-27 134.0
21 TraesCS3D01G116500 chr3A 97.619 42 1 0 2958 2999 81481775 81481734 5.390000e-09 73.1
22 TraesCS3D01G116500 chr7D 86.249 1709 191 24 961 2638 29677001 29675306 0.000000e+00 1814.0
23 TraesCS3D01G116500 chr7D 86.495 1666 188 21 997 2638 29698239 29696587 0.000000e+00 1796.0
24 TraesCS3D01G116500 chr7D 91.852 135 11 0 3707 3841 234351358 234351224 5.130000e-44 189.0
25 TraesCS3D01G116500 chr7D 89.583 144 14 1 3713 3855 229784762 229784905 8.590000e-42 182.0
26 TraesCS3D01G116500 chr4A 81.592 1570 211 42 1082 2630 5348707 5350219 0.000000e+00 1227.0
27 TraesCS3D01G116500 chr4A 92.366 131 10 0 3715 3845 687265096 687265226 1.850000e-43 187.0
28 TraesCS3D01G116500 chr5A 76.101 636 125 20 2014 2631 674372288 674372914 1.360000e-79 307.0
29 TraesCS3D01G116500 chr5A 95.385 65 3 0 2746 2810 451589891 451589955 1.910000e-18 104.0
30 TraesCS3D01G116500 chr5A 89.744 78 4 3 2742 2816 305883821 305883897 3.200000e-16 97.1
31 TraesCS3D01G116500 chr4D 92.424 132 10 0 3712 3843 106682249 106682380 5.130000e-44 189.0
32 TraesCS3D01G116500 chr1A 92.366 131 10 0 3715 3845 84310301 84310171 1.850000e-43 187.0
33 TraesCS3D01G116500 chr1A 92.308 65 5 0 2746 2810 160152624 160152688 4.140000e-15 93.5
34 TraesCS3D01G116500 chr4B 91.111 135 12 0 3711 3845 163458806 163458672 2.390000e-42 183.0
35 TraesCS3D01G116500 chr2A 96.923 65 2 0 2746 2810 171955741 171955805 4.110000e-20 110.0
36 TraesCS3D01G116500 chr5D 95.385 65 3 0 2746 2810 554754485 554754549 1.910000e-18 104.0
37 TraesCS3D01G116500 chr5D 87.692 65 8 0 2746 2810 556451466 556451402 4.170000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G116500 chr3D 69904925 69908814 3889 True 7184.000000 7184 100.000000 1 3890 1 chr3D.!!$R3 3889
1 TraesCS3D01G116500 chr3D 70228376 70230613 2237 False 1587.000000 3061 88.233000 632 2978 2 chr3D.!!$F2 2346
2 TraesCS3D01G116500 chr3D 69913356 69918151 4795 True 523.750000 758 91.177500 1 1701 4 chr3D.!!$R4 1700
3 TraesCS3D01G116500 chr3B 116080681 116082835 2154 False 2998.000000 2998 91.807000 879 3050 1 chr3B.!!$F1 2171
4 TraesCS3D01G116500 chr3B 116007995 116010687 2692 True 1162.000000 2918 87.000000 707 3516 3 chr3B.!!$R1 2809
5 TraesCS3D01G116500 chr3A 81481387 81483981 2594 True 1141.700000 2880 93.274667 612 3386 3 chr3A.!!$R1 2774
6 TraesCS3D01G116500 chr3A 81658396 81664861 6465 False 1054.666667 2861 83.962333 357 3050 3 chr3A.!!$F1 2693
7 TraesCS3D01G116500 chr7D 29675306 29677001 1695 True 1814.000000 1814 86.249000 961 2638 1 chr7D.!!$R1 1677
8 TraesCS3D01G116500 chr7D 29696587 29698239 1652 True 1796.000000 1796 86.495000 997 2638 1 chr7D.!!$R2 1641
9 TraesCS3D01G116500 chr4A 5348707 5350219 1512 False 1227.000000 1227 81.592000 1082 2630 1 chr4A.!!$F1 1548
10 TraesCS3D01G116500 chr5A 674372288 674372914 626 False 307.000000 307 76.101000 2014 2631 1 chr5A.!!$F3 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 418 0.104120 CACTGGTGTCGTCAACTCCA 59.896 55.0 0.0 0.0 46.66 3.86 F
1850 8835 0.250467 TGACCAAGGCTCAGCAAGTC 60.250 55.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 8931 0.453793 ACGTGAGAAGATCAGCCTCG 59.546 55.0 0.0 0.0 39.07 4.63 R
3666 10828 0.039180 TAGCTGTCCCTTCGAGGTCA 59.961 55.0 0.0 0.0 31.93 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 5.875359 ACCAGTTATACAAGAAGCTAGCAAC 59.125 40.000 18.83 10.23 0.00 4.17
79 80 5.298527 GCAACTCAGGGTTTACAAAGTTACT 59.701 40.000 0.00 0.00 35.74 2.24
80 81 6.484308 GCAACTCAGGGTTTACAAAGTTACTA 59.516 38.462 0.00 0.00 35.74 1.82
81 82 7.174426 GCAACTCAGGGTTTACAAAGTTACTAT 59.826 37.037 0.00 0.00 35.74 2.12
82 83 8.504005 CAACTCAGGGTTTACAAAGTTACTATG 58.496 37.037 0.00 0.00 35.74 2.23
83 84 7.742767 ACTCAGGGTTTACAAAGTTACTATGT 58.257 34.615 0.00 0.00 0.00 2.29
85 86 8.611654 TCAGGGTTTACAAAGTTACTATGTTC 57.388 34.615 0.00 0.00 0.00 3.18
86 87 8.212312 TCAGGGTTTACAAAGTTACTATGTTCA 58.788 33.333 0.00 0.00 0.00 3.18
87 88 8.287503 CAGGGTTTACAAAGTTACTATGTTCAC 58.712 37.037 0.00 0.00 0.00 3.18
88 89 7.994334 AGGGTTTACAAAGTTACTATGTTCACA 59.006 33.333 0.00 0.00 0.00 3.58
89 90 8.789762 GGGTTTACAAAGTTACTATGTTCACAT 58.210 33.333 0.00 0.00 40.22 3.21
90 91 9.607285 GGTTTACAAAGTTACTATGTTCACATG 57.393 33.333 2.50 0.00 37.15 3.21
137 138 3.556775 GCATGTGCATCTCTCTTTCTCTC 59.443 47.826 0.00 0.00 41.59 3.20
151 152 8.365060 TCTCTTTCTCTCTCTCAAAGAATGAT 57.635 34.615 0.00 0.00 36.07 2.45
152 153 8.469200 TCTCTTTCTCTCTCTCAAAGAATGATC 58.531 37.037 0.00 0.00 36.07 2.92
154 155 6.765915 TTCTCTCTCTCAAAGAATGATCGA 57.234 37.500 0.00 0.00 37.44 3.59
156 157 6.969366 TCTCTCTCTCAAAGAATGATCGATC 58.031 40.000 18.72 18.72 37.44 3.69
160 161 3.969976 TCTCAAAGAATGATCGATCCCCT 59.030 43.478 22.31 13.12 37.44 4.79
166 167 3.831911 AGAATGATCGATCCCCTTCTCTC 59.168 47.826 22.31 7.33 0.00 3.20
168 169 1.133761 TGATCGATCCCCTTCTCTCGT 60.134 52.381 22.31 0.00 33.10 4.18
170 171 1.103803 TCGATCCCCTTCTCTCGTTG 58.896 55.000 0.00 0.00 33.10 4.10
171 172 0.818296 CGATCCCCTTCTCTCGTTGT 59.182 55.000 0.00 0.00 0.00 3.32
172 173 2.022195 CGATCCCCTTCTCTCGTTGTA 58.978 52.381 0.00 0.00 0.00 2.41
173 174 2.033550 CGATCCCCTTCTCTCGTTGTAG 59.966 54.545 0.00 0.00 0.00 2.74
175 176 0.895530 CCCCTTCTCTCGTTGTAGCA 59.104 55.000 0.00 0.00 0.00 3.49
180 181 1.218316 CTCTCGTTGTAGCACCCCC 59.782 63.158 0.00 0.00 0.00 5.40
181 182 1.229082 TCTCGTTGTAGCACCCCCT 60.229 57.895 0.00 0.00 0.00 4.79
184 185 2.267961 GTTGTAGCACCCCCTCCG 59.732 66.667 0.00 0.00 0.00 4.63
185 186 3.006728 TTGTAGCACCCCCTCCGG 61.007 66.667 0.00 0.00 0.00 5.14
186 187 3.857521 TTGTAGCACCCCCTCCGGT 62.858 63.158 0.00 0.00 36.18 5.28
187 188 3.007323 GTAGCACCCCCTCCGGTT 61.007 66.667 0.00 0.00 32.17 4.44
216 220 0.109179 CCATGTTGACAATGCCACGG 60.109 55.000 0.00 0.00 0.00 4.94
276 280 2.124695 GGACCCATGACTTCGCCC 60.125 66.667 0.00 0.00 0.00 6.13
284 288 1.972660 ATGACTTCGCCCCCTGCTAC 61.973 60.000 0.00 0.00 38.05 3.58
298 302 1.300542 GCTACGCCTCATGCTCCTC 60.301 63.158 0.00 0.00 38.05 3.71
304 308 2.372890 CCTCATGCTCCTCTGCCCA 61.373 63.158 0.00 0.00 0.00 5.36
305 309 1.153208 CTCATGCTCCTCTGCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
310 314 2.693864 CTCCTCTGCCCACCCCAT 60.694 66.667 0.00 0.00 0.00 4.00
320 324 2.272146 CACCCCATCTCCAACCCG 59.728 66.667 0.00 0.00 0.00 5.28
326 330 4.096003 ATCTCCAACCCGCCACCG 62.096 66.667 0.00 0.00 0.00 4.94
350 354 3.625897 CCAGCACCTCGTCCACCA 61.626 66.667 0.00 0.00 0.00 4.17
383 387 2.046988 TGCCGCAGATGTGACAGG 60.047 61.111 0.00 0.00 0.00 4.00
414 418 0.104120 CACTGGTGTCGTCAACTCCA 59.896 55.000 0.00 0.00 46.66 3.86
451 455 0.467384 ACAGGCTCCATCGATCTTGG 59.533 55.000 0.00 0.00 35.45 3.61
472 476 2.158841 GTGTGCCGAAAATCGCTCTTTA 59.841 45.455 0.00 0.00 38.82 1.85
486 490 3.206150 GCTCTTTATTGGCCTGAATCGA 58.794 45.455 3.32 0.00 0.00 3.59
488 492 4.276926 GCTCTTTATTGGCCTGAATCGAAT 59.723 41.667 3.32 0.00 0.00 3.34
491 495 5.885352 TCTTTATTGGCCTGAATCGAATGAA 59.115 36.000 3.32 0.00 0.00 2.57
500 504 1.739466 GAATCGAATGAAGTGCTGCCA 59.261 47.619 0.00 0.00 0.00 4.92
513 517 1.522355 CTGCCAGATTCGACGCCAT 60.522 57.895 0.00 0.00 0.00 4.40
514 518 1.769098 CTGCCAGATTCGACGCCATG 61.769 60.000 0.00 0.00 0.00 3.66
515 519 3.017323 CCAGATTCGACGCCATGC 58.983 61.111 0.00 0.00 0.00 4.06
517 521 1.815003 CAGATTCGACGCCATGCCA 60.815 57.895 0.00 0.00 0.00 4.92
522 526 4.758251 CGACGCCATGCCACCTCA 62.758 66.667 0.00 0.00 0.00 3.86
545 549 2.706190 CTCCTTCCCCTCATACCGAATT 59.294 50.000 0.00 0.00 0.00 2.17
617 657 9.802039 ACTTTAAGGGAATTTTATGTGTGAGTA 57.198 29.630 0.00 0.00 0.00 2.59
665 707 2.215451 AATGACCCGCTCTGGCCATT 62.215 55.000 5.51 0.00 35.77 3.16
695 737 3.229552 GCAGAAAAGACGCATCAAGAAC 58.770 45.455 0.00 0.00 0.00 3.01
698 740 5.273170 CAGAAAAGACGCATCAAGAACAAA 58.727 37.500 0.00 0.00 0.00 2.83
699 741 5.743398 CAGAAAAGACGCATCAAGAACAAAA 59.257 36.000 0.00 0.00 0.00 2.44
703 745 4.539870 AGACGCATCAAGAACAAAACATG 58.460 39.130 0.00 0.00 0.00 3.21
705 747 3.693300 GCATCAAGAACAAAACATGCG 57.307 42.857 0.00 0.00 0.00 4.73
715 757 1.472082 CAAAACATGCGGGCATCTACA 59.528 47.619 2.58 0.00 33.90 2.74
732 4614 5.759506 TCTACATGAAAGAGACGAGGATC 57.240 43.478 0.00 0.00 0.00 3.36
747 4638 3.384146 CGAGGATCTATATGCATGAGGCT 59.616 47.826 10.16 0.00 45.15 4.58
808 4703 1.953686 GGAGAGGAAGAGATGACGAGG 59.046 57.143 0.00 0.00 0.00 4.63
817 4712 3.492337 AGAGATGACGAGGGATTAGGAC 58.508 50.000 0.00 0.00 0.00 3.85
818 4713 3.139397 AGAGATGACGAGGGATTAGGACT 59.861 47.826 0.00 0.00 0.00 3.85
819 4714 3.892588 GAGATGACGAGGGATTAGGACTT 59.107 47.826 0.00 0.00 0.00 3.01
827 4722 2.872945 AGGGATTAGGACTTAGGAGGGT 59.127 50.000 0.00 0.00 0.00 4.34
863 4764 4.904853 TGCACCCATGAAGTATAGATGGTA 59.095 41.667 0.00 0.00 35.75 3.25
894 6346 9.894783 CATTGATTCAATTCAATATGGTCTCTC 57.105 33.333 9.19 0.00 42.90 3.20
907 6359 3.170717 TGGTCTCTCGGGTAGAAACAAT 58.829 45.455 0.00 0.00 32.46 2.71
909 6361 4.960469 TGGTCTCTCGGGTAGAAACAATAT 59.040 41.667 0.00 0.00 32.46 1.28
912 6364 7.124599 TGGTCTCTCGGGTAGAAACAATATTTA 59.875 37.037 0.00 0.00 32.46 1.40
913 6365 7.437565 GGTCTCTCGGGTAGAAACAATATTTAC 59.562 40.741 0.00 0.00 32.46 2.01
914 6366 8.196103 GTCTCTCGGGTAGAAACAATATTTACT 58.804 37.037 0.00 0.00 32.46 2.24
915 6367 8.411683 TCTCTCGGGTAGAAACAATATTTACTC 58.588 37.037 0.00 0.00 32.46 2.59
983 6439 4.019174 CAAATCTCTGCACCTAAACCCAT 58.981 43.478 0.00 0.00 0.00 4.00
1015 6475 8.375506 TCACCTTTCCACTATATAATAAGCCTG 58.624 37.037 0.00 0.00 0.00 4.85
1018 6478 5.693769 TCCACTATATAATAAGCCTGGCC 57.306 43.478 16.57 0.00 0.00 5.36
1847 8832 0.694771 AGATGACCAAGGCTCAGCAA 59.305 50.000 0.00 0.00 0.00 3.91
1850 8835 0.250467 TGACCAAGGCTCAGCAAGTC 60.250 55.000 0.00 0.00 0.00 3.01
2108 9099 2.839098 CTGCTCACCAACCACCCT 59.161 61.111 0.00 0.00 0.00 4.34
2150 9141 2.716017 GGAGCTCCGTGAGACCCTG 61.716 68.421 19.06 0.00 0.00 4.45
2151 9142 3.363844 GAGCTCCGTGAGACCCTGC 62.364 68.421 0.87 0.00 0.00 4.85
2158 9158 1.374758 GTGAGACCCTGCCGTCTTG 60.375 63.158 0.35 0.00 43.22 3.02
2638 9663 2.483188 GGGTATACAAGAGGCAAGACGG 60.483 54.545 5.01 0.00 0.00 4.79
2639 9664 2.202566 GTATACAAGAGGCAAGACGGC 58.797 52.381 0.00 0.00 41.61 5.68
2658 9685 1.081108 GATGCTCGCTAGGGCTACG 60.081 63.158 1.02 0.00 46.20 3.51
2659 9686 3.214250 ATGCTCGCTAGGGCTACGC 62.214 63.158 1.02 3.01 46.20 4.42
2682 9709 2.953669 CGTACTTACGCCGATTGCT 58.046 52.632 0.00 0.00 43.14 3.91
2683 9710 0.844503 CGTACTTACGCCGATTGCTC 59.155 55.000 0.00 0.00 43.14 4.26
2684 9711 0.844503 GTACTTACGCCGATTGCTCG 59.155 55.000 0.00 0.00 44.62 5.03
2685 9712 0.452987 TACTTACGCCGATTGCTCGT 59.547 50.000 0.00 4.32 43.49 4.18
2751 9792 9.725019 ATATACTACATGTAATCCCACACAATG 57.275 33.333 7.06 0.00 34.45 2.82
2826 9868 6.157211 GGACGGAGATATTATGGTGTGTAAG 58.843 44.000 0.00 0.00 0.00 2.34
2837 9893 2.159014 TGGTGTGTAAGTGTGTGAGGTC 60.159 50.000 0.00 0.00 0.00 3.85
2849 9911 6.530120 AGTGTGTGAGGTCATTGTTTGTATA 58.470 36.000 0.00 0.00 0.00 1.47
2887 9973 8.788325 AAGGAGTAATGTGTATACAAAGGAAC 57.212 34.615 7.25 2.41 40.84 3.62
2954 10041 8.651589 AATAAGAAGGGGAAAAGAAGTAAAGG 57.348 34.615 0.00 0.00 0.00 3.11
3004 10125 6.191657 TGGAATAATGATCCAGCATGTAGT 57.808 37.500 0.00 0.00 41.98 2.73
3005 10126 6.233434 TGGAATAATGATCCAGCATGTAGTC 58.767 40.000 0.00 0.00 41.98 2.59
3006 10127 6.043590 TGGAATAATGATCCAGCATGTAGTCT 59.956 38.462 0.00 0.00 41.98 3.24
3007 10128 6.370994 GGAATAATGATCCAGCATGTAGTCTG 59.629 42.308 0.00 0.00 36.92 3.51
3008 10129 6.676990 ATAATGATCCAGCATGTAGTCTGA 57.323 37.500 0.00 0.00 32.26 3.27
3009 10130 5.563876 AATGATCCAGCATGTAGTCTGAT 57.436 39.130 0.00 0.00 32.26 2.90
3010 10131 4.597404 TGATCCAGCATGTAGTCTGATC 57.403 45.455 0.00 0.00 32.26 2.92
3011 10132 4.221530 TGATCCAGCATGTAGTCTGATCT 58.778 43.478 0.00 0.00 32.26 2.75
3012 10133 4.038883 TGATCCAGCATGTAGTCTGATCTG 59.961 45.833 0.00 0.00 32.26 2.90
3013 10134 2.697229 TCCAGCATGTAGTCTGATCTGG 59.303 50.000 0.00 4.39 40.56 3.86
3014 10135 2.433604 CCAGCATGTAGTCTGATCTGGT 59.566 50.000 0.00 0.00 35.97 4.00
3052 10196 2.629137 TGGGATATGAATGCATGCAACC 59.371 45.455 26.68 19.05 35.94 3.77
3167 10311 5.016051 TCATCAGCTCAGTCTAAACATCC 57.984 43.478 0.00 0.00 0.00 3.51
3245 10389 2.227865 ACGTCGCGGTAAACCTAGTTTA 59.772 45.455 6.13 0.00 37.01 2.01
3291 10435 1.454847 GACAAGGCACCAACCACCA 60.455 57.895 0.00 0.00 0.00 4.17
3292 10436 0.827507 GACAAGGCACCAACCACCAT 60.828 55.000 0.00 0.00 0.00 3.55
3328 10472 3.990092 TGCTGACAAAGAACACTATCGT 58.010 40.909 0.00 0.00 0.00 3.73
3368 10512 6.490381 AGAAAACAGGTTCCAGAAGGTTAATC 59.510 38.462 0.00 0.00 35.89 1.75
3405 10549 4.920376 TGCAGCTGTAAGAACTTTTTGAC 58.080 39.130 16.64 0.00 34.07 3.18
3435 10589 3.942130 AGCAAACAAGGACCTTTATGC 57.058 42.857 20.48 20.48 0.00 3.14
3436 10590 2.562738 AGCAAACAAGGACCTTTATGCC 59.437 45.455 22.78 11.56 0.00 4.40
3482 10644 2.191128 ACCTGCAAAGAAGGCTACAG 57.809 50.000 0.00 0.00 38.48 2.74
3489 10651 1.265454 AAGAAGGCTACAGGGACCGG 61.265 60.000 0.00 0.00 0.00 5.28
3492 10654 3.001406 GGCTACAGGGACCGGTGT 61.001 66.667 14.63 6.17 0.00 4.16
3493 10655 2.264794 GCTACAGGGACCGGTGTG 59.735 66.667 14.63 9.50 0.00 3.82
3511 10673 4.693566 GGTGTGTGAATCCTCGAACAATAA 59.306 41.667 0.00 0.00 0.00 1.40
3513 10675 6.307155 GTGTGTGAATCCTCGAACAATAAAG 58.693 40.000 0.00 0.00 0.00 1.85
3514 10676 6.147164 GTGTGTGAATCCTCGAACAATAAAGA 59.853 38.462 0.00 0.00 0.00 2.52
3515 10677 6.368791 TGTGTGAATCCTCGAACAATAAAGAG 59.631 38.462 0.00 0.00 0.00 2.85
3516 10678 6.590292 GTGTGAATCCTCGAACAATAAAGAGA 59.410 38.462 0.00 0.00 32.84 3.10
3517 10679 7.278868 GTGTGAATCCTCGAACAATAAAGAGAT 59.721 37.037 0.00 0.00 32.84 2.75
3518 10680 7.492669 TGTGAATCCTCGAACAATAAAGAGATC 59.507 37.037 0.00 0.00 32.84 2.75
3519 10681 7.708752 GTGAATCCTCGAACAATAAAGAGATCT 59.291 37.037 0.00 0.00 32.84 2.75
3520 10682 8.260818 TGAATCCTCGAACAATAAAGAGATCTT 58.739 33.333 0.00 0.00 37.91 2.40
3521 10683 9.103861 GAATCCTCGAACAATAAAGAGATCTTT 57.896 33.333 12.19 12.19 46.78 2.52
3522 10684 7.834068 TCCTCGAACAATAAAGAGATCTTTG 57.166 36.000 16.29 0.00 45.01 2.77
3523 10685 7.386851 TCCTCGAACAATAAAGAGATCTTTGT 58.613 34.615 16.29 8.21 45.01 2.83
3524 10686 7.331934 TCCTCGAACAATAAAGAGATCTTTGTG 59.668 37.037 16.29 15.23 45.01 3.33
3525 10687 7.118390 CCTCGAACAATAAAGAGATCTTTGTGT 59.882 37.037 16.29 15.75 45.01 3.72
3526 10688 7.796838 TCGAACAATAAAGAGATCTTTGTGTG 58.203 34.615 19.07 14.87 45.01 3.82
3527 10689 7.655732 TCGAACAATAAAGAGATCTTTGTGTGA 59.344 33.333 19.07 13.48 45.01 3.58
3528 10690 8.282592 CGAACAATAAAGAGATCTTTGTGTGAA 58.717 33.333 19.07 2.78 45.01 3.18
3529 10691 9.950680 GAACAATAAAGAGATCTTTGTGTGAAA 57.049 29.630 19.07 2.22 45.01 2.69
3531 10693 9.956720 ACAATAAAGAGATCTTTGTGTGAAAAG 57.043 29.630 16.29 0.00 45.01 2.27
3532 10694 9.956720 CAATAAAGAGATCTTTGTGTGAAAAGT 57.043 29.630 16.29 0.00 45.01 2.66
3533 10695 9.956720 AATAAAGAGATCTTTGTGTGAAAAGTG 57.043 29.630 16.29 0.00 45.01 3.16
3534 10696 7.396540 AAAGAGATCTTTGTGTGAAAAGTGT 57.603 32.000 7.02 0.00 43.87 3.55
3535 10697 8.506168 AAAGAGATCTTTGTGTGAAAAGTGTA 57.494 30.769 7.02 0.00 43.87 2.90
3536 10698 7.721286 AGAGATCTTTGTGTGAAAAGTGTAG 57.279 36.000 0.00 0.00 38.16 2.74
3537 10699 7.275920 AGAGATCTTTGTGTGAAAAGTGTAGT 58.724 34.615 0.00 0.00 38.16 2.73
3538 10700 8.421784 AGAGATCTTTGTGTGAAAAGTGTAGTA 58.578 33.333 0.00 0.00 38.16 1.82
3539 10701 8.366671 AGATCTTTGTGTGAAAAGTGTAGTAC 57.633 34.615 0.00 0.00 38.16 2.73
3540 10702 7.985184 AGATCTTTGTGTGAAAAGTGTAGTACA 59.015 33.333 0.00 0.00 38.16 2.90
3553 10715 5.376854 GTGTAGTACACGAGGGACTAAAA 57.623 43.478 17.29 0.00 38.04 1.52
3554 10716 5.772521 GTGTAGTACACGAGGGACTAAAAA 58.227 41.667 17.29 0.00 38.04 1.94
3555 10717 5.860716 GTGTAGTACACGAGGGACTAAAAAG 59.139 44.000 17.29 0.00 38.04 2.27
3556 10718 5.769662 TGTAGTACACGAGGGACTAAAAAGA 59.230 40.000 0.00 0.00 41.55 2.52
3557 10719 5.997384 AGTACACGAGGGACTAAAAAGAT 57.003 39.130 0.00 0.00 41.55 2.40
3558 10720 5.721232 AGTACACGAGGGACTAAAAAGATG 58.279 41.667 0.00 0.00 41.55 2.90
3559 10721 4.884668 ACACGAGGGACTAAAAAGATGA 57.115 40.909 0.00 0.00 41.55 2.92
3560 10722 5.223449 ACACGAGGGACTAAAAAGATGAA 57.777 39.130 0.00 0.00 41.55 2.57
3561 10723 5.805728 ACACGAGGGACTAAAAAGATGAAT 58.194 37.500 0.00 0.00 41.55 2.57
3562 10724 6.942976 ACACGAGGGACTAAAAAGATGAATA 58.057 36.000 0.00 0.00 41.55 1.75
3563 10725 6.817140 ACACGAGGGACTAAAAAGATGAATAC 59.183 38.462 0.00 0.00 41.55 1.89
3564 10726 6.019801 CACGAGGGACTAAAAAGATGAATACG 60.020 42.308 0.00 0.00 41.55 3.06
3565 10727 5.050972 CGAGGGACTAAAAAGATGAATACGC 60.051 44.000 0.00 0.00 41.55 4.42
3566 10728 4.809426 AGGGACTAAAAAGATGAATACGCG 59.191 41.667 3.53 3.53 36.02 6.01
3567 10729 4.515432 GGACTAAAAAGATGAATACGCGC 58.485 43.478 5.73 0.00 0.00 6.86
3568 10730 4.178156 ACTAAAAAGATGAATACGCGCG 57.822 40.909 30.96 30.96 0.00 6.86
3569 10731 3.615496 ACTAAAAAGATGAATACGCGCGT 59.385 39.130 39.05 39.05 0.00 6.01
3570 10732 2.435685 AAAAGATGAATACGCGCGTG 57.564 45.000 42.78 19.78 0.00 5.34
3571 10733 1.635844 AAAGATGAATACGCGCGTGA 58.364 45.000 42.78 26.87 0.00 4.35
3572 10734 1.635844 AAGATGAATACGCGCGTGAA 58.364 45.000 42.78 26.84 0.00 3.18
3573 10735 1.635844 AGATGAATACGCGCGTGAAA 58.364 45.000 42.78 26.03 0.00 2.69
3574 10736 1.323534 AGATGAATACGCGCGTGAAAC 59.676 47.619 42.78 28.82 0.00 2.78
3575 10737 0.372334 ATGAATACGCGCGTGAAACC 59.628 50.000 42.78 25.91 0.00 3.27
3576 10738 0.668096 TGAATACGCGCGTGAAACCT 60.668 50.000 42.78 20.92 0.00 3.50
3577 10739 1.270971 GAATACGCGCGTGAAACCTA 58.729 50.000 42.78 23.60 0.00 3.08
3578 10740 1.655099 GAATACGCGCGTGAAACCTAA 59.345 47.619 42.78 22.80 0.00 2.69
3579 10741 1.712401 ATACGCGCGTGAAACCTAAA 58.288 45.000 42.78 22.00 0.00 1.85
3580 10742 1.495878 TACGCGCGTGAAACCTAAAA 58.504 45.000 42.78 18.35 0.00 1.52
3581 10743 0.656785 ACGCGCGTGAAACCTAAAAA 59.343 45.000 37.37 0.00 0.00 1.94
3613 10775 2.834574 TTTTGATTTGTGCGTGTCGT 57.165 40.000 0.00 0.00 0.00 4.34
3614 10776 2.376915 TTTGATTTGTGCGTGTCGTC 57.623 45.000 0.00 0.00 0.00 4.20
3615 10777 0.584396 TTGATTTGTGCGTGTCGTCC 59.416 50.000 0.00 0.00 0.00 4.79
3616 10778 0.249699 TGATTTGTGCGTGTCGTCCT 60.250 50.000 0.00 0.00 0.00 3.85
3617 10779 0.865769 GATTTGTGCGTGTCGTCCTT 59.134 50.000 0.00 0.00 0.00 3.36
3618 10780 0.586319 ATTTGTGCGTGTCGTCCTTG 59.414 50.000 0.00 0.00 0.00 3.61
3619 10781 2.042520 TTTGTGCGTGTCGTCCTTGC 62.043 55.000 0.00 0.00 0.00 4.01
3620 10782 4.059459 GTGCGTGTCGTCCTTGCG 62.059 66.667 0.00 0.00 0.00 4.85
3623 10785 3.767230 CGTGTCGTCCTTGCGCAG 61.767 66.667 11.31 4.92 0.00 5.18
3624 10786 2.355837 GTGTCGTCCTTGCGCAGA 60.356 61.111 11.31 1.84 0.00 4.26
3625 10787 2.049156 TGTCGTCCTTGCGCAGAG 60.049 61.111 11.31 11.26 0.00 3.35
3626 10788 2.811317 GTCGTCCTTGCGCAGAGG 60.811 66.667 24.21 24.21 35.53 3.69
3627 10789 4.742201 TCGTCCTTGCGCAGAGGC 62.742 66.667 24.94 19.92 34.17 4.70
3629 10791 4.704833 GTCCTTGCGCAGAGGCCA 62.705 66.667 24.94 12.45 36.38 5.36
3630 10792 3.720601 TCCTTGCGCAGAGGCCAT 61.721 61.111 24.94 0.00 36.38 4.40
3631 10793 3.515286 CCTTGCGCAGAGGCCATG 61.515 66.667 20.56 4.20 36.38 3.66
3632 10794 4.189188 CTTGCGCAGAGGCCATGC 62.189 66.667 20.05 20.05 40.35 4.06
3633 10795 4.728110 TTGCGCAGAGGCCATGCT 62.728 61.111 25.13 8.92 41.61 3.79
3634 10796 3.328093 TTGCGCAGAGGCCATGCTA 62.328 57.895 25.13 14.42 41.61 3.49
3635 10797 2.514592 GCGCAGAGGCCATGCTAA 60.515 61.111 25.13 0.00 41.61 3.09
3636 10798 1.895707 GCGCAGAGGCCATGCTAAT 60.896 57.895 25.13 0.00 41.61 1.73
3637 10799 1.450531 GCGCAGAGGCCATGCTAATT 61.451 55.000 25.13 0.00 41.61 1.40
3638 10800 1.027357 CGCAGAGGCCATGCTAATTT 58.973 50.000 25.13 0.00 41.61 1.82
3639 10801 1.406539 CGCAGAGGCCATGCTAATTTT 59.593 47.619 25.13 0.00 41.61 1.82
3640 10802 2.542411 CGCAGAGGCCATGCTAATTTTC 60.542 50.000 25.13 2.58 41.61 2.29
3641 10803 2.692041 GCAGAGGCCATGCTAATTTTCT 59.308 45.455 22.05 2.03 40.59 2.52
3642 10804 3.243334 GCAGAGGCCATGCTAATTTTCTC 60.243 47.826 22.05 0.00 40.59 2.87
3643 10805 4.205587 CAGAGGCCATGCTAATTTTCTCT 58.794 43.478 5.01 0.00 0.00 3.10
3644 10806 4.036498 CAGAGGCCATGCTAATTTTCTCTG 59.964 45.833 5.01 0.00 40.29 3.35
3645 10807 3.950395 GAGGCCATGCTAATTTTCTCTGT 59.050 43.478 5.01 0.00 0.00 3.41
3646 10808 5.104360 AGAGGCCATGCTAATTTTCTCTGTA 60.104 40.000 5.01 0.00 0.00 2.74
3647 10809 5.699143 AGGCCATGCTAATTTTCTCTGTAT 58.301 37.500 5.01 0.00 0.00 2.29
3648 10810 5.767168 AGGCCATGCTAATTTTCTCTGTATC 59.233 40.000 5.01 0.00 0.00 2.24
3649 10811 5.532406 GGCCATGCTAATTTTCTCTGTATCA 59.468 40.000 0.00 0.00 0.00 2.15
3650 10812 6.208204 GGCCATGCTAATTTTCTCTGTATCAT 59.792 38.462 0.00 0.00 0.00 2.45
3651 10813 7.255730 GGCCATGCTAATTTTCTCTGTATCATT 60.256 37.037 0.00 0.00 0.00 2.57
3652 10814 7.806960 GCCATGCTAATTTTCTCTGTATCATTC 59.193 37.037 0.00 0.00 0.00 2.67
3653 10815 9.064706 CCATGCTAATTTTCTCTGTATCATTCT 57.935 33.333 0.00 0.00 0.00 2.40
3673 10835 8.978539 TCATTCTAATTTTATCGAATGACCTCG 58.021 33.333 8.88 0.00 43.82 4.63
3679 10841 3.276281 TCGAATGACCTCGAAGGGA 57.724 52.632 0.00 0.00 44.49 4.20
3680 10842 0.815734 TCGAATGACCTCGAAGGGAC 59.184 55.000 0.00 0.00 44.49 4.46
3681 10843 0.530744 CGAATGACCTCGAAGGGACA 59.469 55.000 0.00 0.00 40.58 4.02
3682 10844 1.469940 CGAATGACCTCGAAGGGACAG 60.470 57.143 0.00 0.00 40.58 3.51
3683 10845 0.250513 AATGACCTCGAAGGGACAGC 59.749 55.000 0.00 0.00 40.58 4.40
3684 10846 0.616111 ATGACCTCGAAGGGACAGCT 60.616 55.000 0.00 0.00 40.58 4.24
3685 10847 0.039180 TGACCTCGAAGGGACAGCTA 59.961 55.000 0.00 0.00 40.58 3.32
3686 10848 1.342076 TGACCTCGAAGGGACAGCTAT 60.342 52.381 0.00 0.00 40.58 2.97
3687 10849 2.092049 TGACCTCGAAGGGACAGCTATA 60.092 50.000 0.00 0.00 40.58 1.31
3688 10850 2.554893 GACCTCGAAGGGACAGCTATAG 59.445 54.545 0.00 0.00 40.58 1.31
3689 10851 1.271102 CCTCGAAGGGACAGCTATAGC 59.729 57.143 17.33 17.33 42.49 2.97
3690 10852 5.600573 ACCTCGAAGGGACAGCTATAGCT 62.601 52.174 21.82 21.82 46.72 3.32
3700 10862 2.977700 GCTATAGCTGCAGCAACGA 58.022 52.632 38.24 21.39 45.16 3.85
3701 10863 0.857935 GCTATAGCTGCAGCAACGAG 59.142 55.000 38.24 27.70 45.16 4.18
3702 10864 1.804372 GCTATAGCTGCAGCAACGAGT 60.804 52.381 38.24 20.37 45.16 4.18
3703 10865 2.544685 CTATAGCTGCAGCAACGAGTT 58.455 47.619 38.24 19.63 45.16 3.01
3704 10866 1.813513 ATAGCTGCAGCAACGAGTTT 58.186 45.000 38.24 18.88 45.16 2.66
3705 10867 2.448926 TAGCTGCAGCAACGAGTTTA 57.551 45.000 38.24 17.80 45.16 2.01
3706 10868 1.813513 AGCTGCAGCAACGAGTTTAT 58.186 45.000 38.24 12.75 45.16 1.40
3707 10869 2.972625 AGCTGCAGCAACGAGTTTATA 58.027 42.857 38.24 0.00 45.16 0.98
3708 10870 3.334691 AGCTGCAGCAACGAGTTTATAA 58.665 40.909 38.24 0.00 45.16 0.98
3709 10871 3.751175 AGCTGCAGCAACGAGTTTATAAA 59.249 39.130 38.24 0.00 45.16 1.40
3710 10872 3.846335 GCTGCAGCAACGAGTTTATAAAC 59.154 43.478 33.36 18.77 41.59 2.01
3711 10873 4.378459 GCTGCAGCAACGAGTTTATAAACT 60.378 41.667 33.36 27.01 45.39 2.66
3712 10874 5.163893 GCTGCAGCAACGAGTTTATAAACTA 60.164 40.000 33.36 10.30 44.04 2.24
3713 10875 6.619874 GCTGCAGCAACGAGTTTATAAACTAA 60.620 38.462 33.36 7.20 44.04 2.24
3714 10876 7.887164 GCTGCAGCAACGAGTTTATAAACTAAT 60.887 37.037 33.36 16.71 44.04 1.73
3738 10900 9.454859 AATACTCCCTCTGTCTTAAAATTCTTG 57.545 33.333 0.00 0.00 0.00 3.02
3739 10901 6.842676 ACTCCCTCTGTCTTAAAATTCTTGT 58.157 36.000 0.00 0.00 0.00 3.16
3740 10902 6.937465 ACTCCCTCTGTCTTAAAATTCTTGTC 59.063 38.462 0.00 0.00 0.00 3.18
3741 10903 7.079451 TCCCTCTGTCTTAAAATTCTTGTCT 57.921 36.000 0.00 0.00 0.00 3.41
3742 10904 7.518188 TCCCTCTGTCTTAAAATTCTTGTCTT 58.482 34.615 0.00 0.00 0.00 3.01
3743 10905 8.656806 TCCCTCTGTCTTAAAATTCTTGTCTTA 58.343 33.333 0.00 0.00 0.00 2.10
3744 10906 8.940952 CCCTCTGTCTTAAAATTCTTGTCTTAG 58.059 37.037 0.00 0.00 0.00 2.18
3745 10907 9.712305 CCTCTGTCTTAAAATTCTTGTCTTAGA 57.288 33.333 0.00 0.00 0.00 2.10
3796 10958 7.539712 AGTAAAATGTGTCTTGATACATCCG 57.460 36.000 12.19 0.00 36.56 4.18
3797 10959 7.103641 AGTAAAATGTGTCTTGATACATCCGT 58.896 34.615 12.19 5.18 36.56 4.69
3798 10960 8.255206 AGTAAAATGTGTCTTGATACATCCGTA 58.745 33.333 12.19 4.43 36.56 4.02
3799 10961 9.042008 GTAAAATGTGTCTTGATACATCCGTAT 57.958 33.333 12.19 0.00 41.16 3.06
3800 10962 8.506168 AAAATGTGTCTTGATACATCCGTATT 57.494 30.769 12.19 2.25 38.48 1.89
3801 10963 8.506168 AAATGTGTCTTGATACATCCGTATTT 57.494 30.769 12.19 2.34 38.48 1.40
3802 10964 9.607988 AAATGTGTCTTGATACATCCGTATTTA 57.392 29.630 12.19 0.00 38.48 1.40
3803 10965 8.818141 ATGTGTCTTGATACATCCGTATTTAG 57.182 34.615 7.10 0.00 38.48 1.85
3804 10966 8.002984 TGTGTCTTGATACATCCGTATTTAGA 57.997 34.615 0.00 0.00 38.48 2.10
3805 10967 7.919091 TGTGTCTTGATACATCCGTATTTAGAC 59.081 37.037 14.63 14.63 42.28 2.59
3806 10968 7.919091 GTGTCTTGATACATCCGTATTTAGACA 59.081 37.037 17.56 17.56 45.11 3.41
3807 10969 8.471609 TGTCTTGATACATCCGTATTTAGACAA 58.528 33.333 18.39 6.16 44.80 3.18
3808 10970 9.309516 GTCTTGATACATCCGTATTTAGACAAA 57.690 33.333 15.66 0.00 41.97 2.83
3816 10978 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3817 10979 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3835 10997 8.726988 TCTAAGACAATAATTTTGAAACGGAGG 58.273 33.333 7.18 0.00 0.00 4.30
3836 10998 6.267496 AGACAATAATTTTGAAACGGAGGG 57.733 37.500 7.18 0.00 0.00 4.30
3837 10999 6.007703 AGACAATAATTTTGAAACGGAGGGA 58.992 36.000 7.18 0.00 0.00 4.20
3838 11000 6.151144 AGACAATAATTTTGAAACGGAGGGAG 59.849 38.462 7.18 0.00 0.00 4.30
3839 11001 5.773176 ACAATAATTTTGAAACGGAGGGAGT 59.227 36.000 7.18 0.00 0.00 3.85
3840 11002 6.943718 ACAATAATTTTGAAACGGAGGGAGTA 59.056 34.615 7.18 0.00 0.00 2.59
3841 11003 6.997239 ATAATTTTGAAACGGAGGGAGTAC 57.003 37.500 0.00 0.00 0.00 2.73
3842 11004 4.635699 ATTTTGAAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
3843 11005 4.426736 TTTTGAAACGGAGGGAGTACTT 57.573 40.909 0.00 0.00 0.00 2.24
3844 11006 4.426736 TTTGAAACGGAGGGAGTACTTT 57.573 40.909 0.00 0.00 0.00 2.66
3845 11007 4.426736 TTGAAACGGAGGGAGTACTTTT 57.573 40.909 0.00 0.00 0.00 2.27
3846 11008 4.426736 TGAAACGGAGGGAGTACTTTTT 57.573 40.909 0.00 0.00 0.00 1.94
3867 11029 6.494893 TTTTTCATTGTTCGGAGATACAGG 57.505 37.500 0.00 0.00 35.04 4.00
3868 11030 5.414789 TTTCATTGTTCGGAGATACAGGA 57.585 39.130 0.00 0.00 35.04 3.86
3869 11031 4.386867 TCATTGTTCGGAGATACAGGAC 57.613 45.455 0.00 0.00 35.04 3.85
3870 11032 4.023980 TCATTGTTCGGAGATACAGGACT 58.976 43.478 0.00 0.00 35.04 3.85
3871 11033 5.198207 TCATTGTTCGGAGATACAGGACTA 58.802 41.667 0.00 0.00 35.04 2.59
3872 11034 5.655090 TCATTGTTCGGAGATACAGGACTAA 59.345 40.000 0.00 0.00 35.04 2.24
3873 11035 5.988310 TTGTTCGGAGATACAGGACTAAA 57.012 39.130 0.00 0.00 35.04 1.85
3874 11036 5.320549 TGTTCGGAGATACAGGACTAAAC 57.679 43.478 0.00 0.00 35.04 2.01
3875 11037 4.768448 TGTTCGGAGATACAGGACTAAACA 59.232 41.667 0.00 0.00 35.04 2.83
3876 11038 5.244402 TGTTCGGAGATACAGGACTAAACAA 59.756 40.000 0.00 0.00 35.04 2.83
3877 11039 5.578005 TCGGAGATACAGGACTAAACAAG 57.422 43.478 0.00 0.00 0.00 3.16
3878 11040 4.401519 TCGGAGATACAGGACTAAACAAGG 59.598 45.833 0.00 0.00 0.00 3.61
3879 11041 4.401519 CGGAGATACAGGACTAAACAAGGA 59.598 45.833 0.00 0.00 0.00 3.36
3880 11042 5.450688 CGGAGATACAGGACTAAACAAGGAG 60.451 48.000 0.00 0.00 0.00 3.69
3881 11043 5.657302 GGAGATACAGGACTAAACAAGGAGA 59.343 44.000 0.00 0.00 0.00 3.71
3882 11044 6.154706 GGAGATACAGGACTAAACAAGGAGAA 59.845 42.308 0.00 0.00 0.00 2.87
3883 11045 7.310485 GGAGATACAGGACTAAACAAGGAGAAA 60.310 40.741 0.00 0.00 0.00 2.52
3884 11046 7.974504 AGATACAGGACTAAACAAGGAGAAAA 58.025 34.615 0.00 0.00 0.00 2.29
3885 11047 8.437575 AGATACAGGACTAAACAAGGAGAAAAA 58.562 33.333 0.00 0.00 0.00 1.94
3886 11048 9.232473 GATACAGGACTAAACAAGGAGAAAAAT 57.768 33.333 0.00 0.00 0.00 1.82
3887 11049 7.511959 ACAGGACTAAACAAGGAGAAAAATC 57.488 36.000 0.00 0.00 0.00 2.17
3888 11050 7.290813 ACAGGACTAAACAAGGAGAAAAATCT 58.709 34.615 0.00 0.00 0.00 2.40
3889 11051 8.437575 ACAGGACTAAACAAGGAGAAAAATCTA 58.562 33.333 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.428159 AGCTTCTTGTATAACTGGTGTTTGAG 59.572 38.462 0.00 0.00 37.59 3.02
33 34 5.046591 TGCTAGCTTCTTGTATAACTGGTGT 60.047 40.000 17.23 0.00 0.00 4.16
44 45 2.289945 CCCTGAGTTGCTAGCTTCTTGT 60.290 50.000 17.23 0.00 0.00 3.16
59 60 8.617290 AACATAGTAACTTTGTAAACCCTGAG 57.383 34.615 0.00 0.00 0.00 3.35
137 138 4.040217 AGGGGATCGATCATTCTTTGAGAG 59.960 45.833 25.93 0.00 37.89 3.20
151 152 1.103803 CAACGAGAGAAGGGGATCGA 58.896 55.000 0.00 0.00 38.50 3.59
152 153 0.818296 ACAACGAGAGAAGGGGATCG 59.182 55.000 0.00 0.00 40.86 3.69
154 155 1.757699 GCTACAACGAGAGAAGGGGAT 59.242 52.381 0.00 0.00 0.00 3.85
156 157 0.895530 TGCTACAACGAGAGAAGGGG 59.104 55.000 0.00 0.00 0.00 4.79
160 161 0.606604 GGGGTGCTACAACGAGAGAA 59.393 55.000 0.00 0.00 0.00 2.87
166 167 2.267961 GGAGGGGGTGCTACAACG 59.732 66.667 0.00 0.00 0.00 4.10
185 186 0.737019 CAACATGGATTGCGGGCAAC 60.737 55.000 8.44 3.17 38.88 4.17
186 187 0.897401 TCAACATGGATTGCGGGCAA 60.897 50.000 8.72 8.72 40.47 4.52
187 188 1.303970 TCAACATGGATTGCGGGCA 60.304 52.632 0.00 0.00 0.00 5.36
227 231 4.851179 GGAATGGACGCGGGGGTC 62.851 72.222 12.47 7.29 36.18 4.46
237 241 1.635487 CCTCCAAACTGAGGGAATGGA 59.365 52.381 0.00 0.00 46.85 3.41
257 261 1.745489 GGCGAAGTCATGGGTCCAC 60.745 63.158 0.00 0.00 0.00 4.02
298 302 2.615465 TTGGAGATGGGGTGGGCAG 61.615 63.158 0.00 0.00 0.00 4.85
304 308 3.728373 GCGGGTTGGAGATGGGGT 61.728 66.667 0.00 0.00 0.00 4.95
305 309 4.506255 GGCGGGTTGGAGATGGGG 62.506 72.222 0.00 0.00 0.00 4.96
309 313 4.096003 CGGTGGCGGGTTGGAGAT 62.096 66.667 0.00 0.00 0.00 2.75
326 330 4.537433 CGAGGTGCTGGCCTAGGC 62.537 72.222 26.55 26.55 39.34 3.93
334 338 1.742880 CATGGTGGACGAGGTGCTG 60.743 63.158 0.00 0.00 0.00 4.41
336 340 1.741770 GACATGGTGGACGAGGTGC 60.742 63.158 0.00 0.00 0.00 5.01
350 354 1.134901 GCAGACTCGTCGACGACAT 59.865 57.895 34.97 25.62 44.22 3.06
383 387 0.460284 CACCAGTGGCGACATAGGAC 60.460 60.000 17.76 0.00 46.14 3.85
434 438 0.467384 CACCAAGATCGATGGAGCCT 59.533 55.000 22.64 0.00 40.56 4.58
451 455 0.517316 AAGAGCGATTTTCGGCACAC 59.483 50.000 0.00 0.00 40.84 3.82
472 476 3.379372 CACTTCATTCGATTCAGGCCAAT 59.621 43.478 5.01 0.00 0.00 3.16
486 490 1.741706 CGAATCTGGCAGCACTTCATT 59.258 47.619 10.34 2.86 0.00 2.57
488 492 0.321346 TCGAATCTGGCAGCACTTCA 59.679 50.000 10.34 0.00 0.00 3.02
491 495 1.446792 CGTCGAATCTGGCAGCACT 60.447 57.895 10.34 0.00 0.00 4.40
500 504 1.815421 GTGGCATGGCGTCGAATCT 60.815 57.895 15.27 0.00 0.00 2.40
513 517 2.224159 GGAAGGAGGTGAGGTGGCA 61.224 63.158 0.00 0.00 0.00 4.92
514 518 2.671682 GGAAGGAGGTGAGGTGGC 59.328 66.667 0.00 0.00 0.00 5.01
515 519 2.301738 GGGGAAGGAGGTGAGGTGG 61.302 68.421 0.00 0.00 0.00 4.61
517 521 1.081277 GAGGGGAAGGAGGTGAGGT 59.919 63.158 0.00 0.00 0.00 3.85
522 526 0.398664 CGGTATGAGGGGAAGGAGGT 60.399 60.000 0.00 0.00 0.00 3.85
574 578 3.902881 AAGTGGGACTCATCTGTCATC 57.097 47.619 0.00 0.00 38.61 2.92
665 707 0.937304 GTCTTTTCTGCACTCACGCA 59.063 50.000 0.00 0.00 40.32 5.24
695 737 1.472082 TGTAGATGCCCGCATGTTTTG 59.528 47.619 6.96 0.00 36.70 2.44
698 740 1.134128 TCATGTAGATGCCCGCATGTT 60.134 47.619 6.96 0.00 39.54 2.71
699 741 0.469494 TCATGTAGATGCCCGCATGT 59.531 50.000 6.96 5.67 39.54 3.21
703 745 1.869767 CTCTTTCATGTAGATGCCCGC 59.130 52.381 0.00 0.00 0.00 6.13
705 747 3.126831 CGTCTCTTTCATGTAGATGCCC 58.873 50.000 0.00 0.00 0.00 5.36
715 757 6.435591 TGCATATAGATCCTCGTCTCTTTCAT 59.564 38.462 0.00 0.00 0.00 2.57
732 4614 7.104290 CCATGGATATAGCCTCATGCATATAG 58.896 42.308 5.56 0.00 44.83 1.31
747 4638 3.059853 TCAAAGGCCCACCATGGATATA 58.940 45.455 21.47 0.00 40.96 0.86
808 4703 5.077369 ACTACCCTCCTAAGTCCTAATCC 57.923 47.826 0.00 0.00 0.00 3.01
817 4712 6.038714 GCAATTGAATTGACTACCCTCCTAAG 59.961 42.308 21.14 0.00 42.83 2.18
818 4713 5.885912 GCAATTGAATTGACTACCCTCCTAA 59.114 40.000 21.14 0.00 42.83 2.69
819 4714 5.045213 TGCAATTGAATTGACTACCCTCCTA 60.045 40.000 21.14 0.00 42.83 2.94
827 4722 5.015515 TCATGGGTGCAATTGAATTGACTA 58.984 37.500 21.14 8.74 42.83 2.59
894 6346 6.704937 GGAGGAGTAAATATTGTTTCTACCCG 59.295 42.308 0.00 0.00 0.00 5.28
907 6359 6.391649 AGAGAAGAGAGGAGGAGGAGTAAATA 59.608 42.308 0.00 0.00 0.00 1.40
909 6361 4.542525 AGAGAAGAGAGGAGGAGGAGTAAA 59.457 45.833 0.00 0.00 0.00 2.01
912 6364 2.573463 AGAGAAGAGAGGAGGAGGAGT 58.427 52.381 0.00 0.00 0.00 3.85
913 6365 3.290710 CAAGAGAAGAGAGGAGGAGGAG 58.709 54.545 0.00 0.00 0.00 3.69
914 6366 2.622977 GCAAGAGAAGAGAGGAGGAGGA 60.623 54.545 0.00 0.00 0.00 3.71
915 6367 1.756538 GCAAGAGAAGAGAGGAGGAGG 59.243 57.143 0.00 0.00 0.00 4.30
983 6439 3.502051 ATAGTGGAAAGGTGAGGGGTA 57.498 47.619 0.00 0.00 0.00 3.69
1713 8698 3.925238 CGCGGCGAATGGCACTAC 61.925 66.667 19.16 0.00 46.16 2.73
1940 8931 0.453793 ACGTGAGAAGATCAGCCTCG 59.546 55.000 0.00 0.00 39.07 4.63
2108 9099 1.596934 GATCTTGGCCTCCACGTCA 59.403 57.895 3.32 0.00 30.78 4.35
2132 9123 2.363147 AGGGTCTCACGGAGCTCC 60.363 66.667 23.79 23.79 41.70 4.70
2193 9212 2.663520 CGCGTGCAGGTACACCAA 60.664 61.111 8.40 0.00 37.25 3.67
2367 9386 1.599576 GGAACTCCAGGCAGTCCTC 59.400 63.158 0.00 0.00 41.93 3.71
2640 9665 1.081108 CGTAGCCCTAGCGAGCATC 60.081 63.158 0.00 0.00 46.67 3.91
2679 9706 0.958876 TAGGACTTGCGAGACGAGCA 60.959 55.000 8.31 0.00 43.59 4.26
2680 9707 0.382515 ATAGGACTTGCGAGACGAGC 59.617 55.000 8.31 0.00 32.28 5.03
2681 9708 1.402259 ACATAGGACTTGCGAGACGAG 59.598 52.381 8.31 0.00 35.67 4.18
2682 9709 1.132453 CACATAGGACTTGCGAGACGA 59.868 52.381 8.31 0.00 0.00 4.20
2683 9710 1.550065 CACATAGGACTTGCGAGACG 58.450 55.000 8.31 0.00 0.00 4.18
2684 9711 1.281899 GCACATAGGACTTGCGAGAC 58.718 55.000 8.31 0.42 0.00 3.36
2685 9712 0.894835 TGCACATAGGACTTGCGAGA 59.105 50.000 8.31 0.00 39.22 4.04
2731 9764 8.637196 TTTTACATTGTGTGGGATTACATGTA 57.363 30.769 0.08 0.08 32.43 2.29
2732 9765 7.531857 TTTTACATTGTGTGGGATTACATGT 57.468 32.000 2.69 2.69 32.43 3.21
2733 9766 8.034215 ACATTTTACATTGTGTGGGATTACATG 58.966 33.333 0.00 0.00 32.43 3.21
2751 9792 7.984002 AAAATGGCTTGCAAAAACATTTTAC 57.016 28.000 28.40 5.23 43.83 2.01
2798 9840 3.323691 CACCATAATATCTCCGTCCCACA 59.676 47.826 0.00 0.00 0.00 4.17
2826 9868 5.689383 ATACAAACAATGACCTCACACAC 57.311 39.130 0.00 0.00 0.00 3.82
2849 9911 9.515226 ACACATTACTCCTTTGTATACACATTT 57.485 29.630 4.68 0.00 33.76 2.32
2928 10015 9.749340 CCTTTACTTCTTTTCCCCTTCTTATTA 57.251 33.333 0.00 0.00 0.00 0.98
2931 10018 7.396906 TCCTTTACTTCTTTTCCCCTTCTTA 57.603 36.000 0.00 0.00 0.00 2.10
2932 10019 6.275692 TCCTTTACTTCTTTTCCCCTTCTT 57.724 37.500 0.00 0.00 0.00 2.52
2934 10021 6.971726 TTTCCTTTACTTCTTTTCCCCTTC 57.028 37.500 0.00 0.00 0.00 3.46
2936 10023 5.780282 CCATTTCCTTTACTTCTTTTCCCCT 59.220 40.000 0.00 0.00 0.00 4.79
2940 10027 7.722363 TCCAACCATTTCCTTTACTTCTTTTC 58.278 34.615 0.00 0.00 0.00 2.29
2943 10030 6.609616 TGTTCCAACCATTTCCTTTACTTCTT 59.390 34.615 0.00 0.00 0.00 2.52
2945 10032 6.264518 TCTGTTCCAACCATTTCCTTTACTTC 59.735 38.462 0.00 0.00 0.00 3.01
2947 10034 5.701224 TCTGTTCCAACCATTTCCTTTACT 58.299 37.500 0.00 0.00 0.00 2.24
2948 10035 6.399639 TTCTGTTCCAACCATTTCCTTTAC 57.600 37.500 0.00 0.00 0.00 2.01
2949 10036 6.014669 CCATTCTGTTCCAACCATTTCCTTTA 60.015 38.462 0.00 0.00 0.00 1.85
2950 10037 5.221702 CCATTCTGTTCCAACCATTTCCTTT 60.222 40.000 0.00 0.00 0.00 3.11
2951 10038 4.284234 CCATTCTGTTCCAACCATTTCCTT 59.716 41.667 0.00 0.00 0.00 3.36
2952 10039 3.834231 CCATTCTGTTCCAACCATTTCCT 59.166 43.478 0.00 0.00 0.00 3.36
2953 10040 3.617288 GCCATTCTGTTCCAACCATTTCC 60.617 47.826 0.00 0.00 0.00 3.13
2954 10041 3.588955 GCCATTCTGTTCCAACCATTTC 58.411 45.455 0.00 0.00 0.00 2.17
2996 10117 2.208431 GCACCAGATCAGACTACATGC 58.792 52.381 0.00 0.00 0.00 4.06
2997 10118 3.193263 GTGCACCAGATCAGACTACATG 58.807 50.000 5.22 0.00 0.00 3.21
2998 10119 2.833943 TGTGCACCAGATCAGACTACAT 59.166 45.455 15.69 0.00 0.00 2.29
2999 10120 2.232208 CTGTGCACCAGATCAGACTACA 59.768 50.000 15.69 0.00 44.49 2.74
3000 10121 2.493675 TCTGTGCACCAGATCAGACTAC 59.506 50.000 15.69 0.00 45.34 2.73
3001 10122 2.807676 TCTGTGCACCAGATCAGACTA 58.192 47.619 15.69 0.00 45.34 2.59
3002 10123 1.637338 TCTGTGCACCAGATCAGACT 58.363 50.000 15.69 0.00 45.34 3.24
3010 10131 3.079578 AGTTGATCAATCTGTGCACCAG 58.920 45.455 15.69 11.86 42.97 4.00
3011 10132 2.815503 CAGTTGATCAATCTGTGCACCA 59.184 45.455 15.69 0.34 0.00 4.17
3012 10133 2.163010 CCAGTTGATCAATCTGTGCACC 59.837 50.000 24.08 7.65 0.00 5.01
3013 10134 2.163010 CCCAGTTGATCAATCTGTGCAC 59.837 50.000 24.08 10.75 0.00 4.57
3014 10135 2.040145 TCCCAGTTGATCAATCTGTGCA 59.960 45.455 24.08 12.66 0.00 4.57
3052 10196 1.375908 TGCACCAGGCTAGCTTTCG 60.376 57.895 15.72 1.71 45.15 3.46
3141 10285 4.111916 GTTTAGACTGAGCTGATGAGAGC 58.888 47.826 0.00 0.00 39.46 4.09
3167 10311 1.976728 CTACGCTACGTGTCTGTGTTG 59.023 52.381 0.00 0.00 41.39 3.33
3198 10342 3.014623 TCAGTGACTAACATCGATCGGT 58.985 45.455 16.41 4.70 0.00 4.69
3204 10348 3.604198 CGTTGAGTCAGTGACTAACATCG 59.396 47.826 25.53 22.92 43.53 3.84
3245 10389 0.541863 CTTATCGTGTCTTGGCCCCT 59.458 55.000 0.00 0.00 0.00 4.79
3247 10391 1.653151 GACTTATCGTGTCTTGGCCC 58.347 55.000 0.00 0.00 0.00 5.80
3291 10435 3.751698 GTCAGCAGGAAACCGTAGAAAAT 59.248 43.478 0.00 0.00 0.00 1.82
3292 10436 3.135994 GTCAGCAGGAAACCGTAGAAAA 58.864 45.455 0.00 0.00 0.00 2.29
3368 10512 1.797046 GCTGCAGATATCACGTCCATG 59.203 52.381 20.43 0.00 0.00 3.66
3405 10549 5.011023 AGGTCCTTGTTTGCTTTATTTCCAG 59.989 40.000 0.00 0.00 0.00 3.86
3414 10558 3.006859 GGCATAAAGGTCCTTGTTTGCTT 59.993 43.478 22.90 4.81 0.00 3.91
3435 10589 2.366584 CGCGTGCACTGCATTTTGG 61.367 57.895 25.50 10.47 41.91 3.28
3436 10590 1.332180 CTCGCGTGCACTGCATTTTG 61.332 55.000 25.50 13.66 41.91 2.44
3482 10644 1.376812 GGATTCACACACCGGTCCC 60.377 63.158 2.59 0.00 0.00 4.46
3489 10651 5.856126 TTATTGTTCGAGGATTCACACAC 57.144 39.130 0.00 0.00 0.00 3.82
3492 10654 6.697395 TCTCTTTATTGTTCGAGGATTCACA 58.303 36.000 0.00 0.00 0.00 3.58
3493 10655 7.708752 AGATCTCTTTATTGTTCGAGGATTCAC 59.291 37.037 0.00 0.00 0.00 3.18
3511 10673 7.770897 ACTACACTTTTCACACAAAGATCTCTT 59.229 33.333 0.00 0.00 37.24 2.85
3513 10675 7.484035 ACTACACTTTTCACACAAAGATCTC 57.516 36.000 0.00 0.00 37.24 2.75
3514 10676 7.985184 TGTACTACACTTTTCACACAAAGATCT 59.015 33.333 0.00 0.00 37.24 2.75
3515 10677 8.062448 GTGTACTACACTTTTCACACAAAGATC 58.938 37.037 11.50 0.00 45.27 2.75
3516 10678 7.254319 CGTGTACTACACTTTTCACACAAAGAT 60.254 37.037 15.76 0.00 46.46 2.40
3517 10679 6.035220 CGTGTACTACACTTTTCACACAAAGA 59.965 38.462 15.76 0.00 46.46 2.52
3518 10680 6.035220 TCGTGTACTACACTTTTCACACAAAG 59.965 38.462 15.76 0.00 46.46 2.77
3519 10681 5.868258 TCGTGTACTACACTTTTCACACAAA 59.132 36.000 15.76 0.00 46.46 2.83
3520 10682 5.409211 TCGTGTACTACACTTTTCACACAA 58.591 37.500 15.76 0.00 46.46 3.33
3521 10683 4.996344 TCGTGTACTACACTTTTCACACA 58.004 39.130 15.76 0.00 46.46 3.72
3522 10684 4.443394 CCTCGTGTACTACACTTTTCACAC 59.557 45.833 15.76 0.00 46.46 3.82
3523 10685 4.500205 CCCTCGTGTACTACACTTTTCACA 60.500 45.833 15.76 0.00 46.46 3.58
3524 10686 3.985925 CCCTCGTGTACTACACTTTTCAC 59.014 47.826 15.76 0.00 46.46 3.18
3525 10687 3.890756 TCCCTCGTGTACTACACTTTTCA 59.109 43.478 15.76 0.00 46.46 2.69
3526 10688 4.022503 AGTCCCTCGTGTACTACACTTTTC 60.023 45.833 15.76 3.87 46.46 2.29
3527 10689 3.893813 AGTCCCTCGTGTACTACACTTTT 59.106 43.478 15.76 0.00 46.46 2.27
3528 10690 3.494332 AGTCCCTCGTGTACTACACTTT 58.506 45.455 15.76 0.00 46.46 2.66
3529 10691 3.151912 AGTCCCTCGTGTACTACACTT 57.848 47.619 15.76 0.00 46.46 3.16
3530 10692 2.875094 AGTCCCTCGTGTACTACACT 57.125 50.000 15.76 0.00 46.46 3.55
3531 10693 5.376854 TTTTAGTCCCTCGTGTACTACAC 57.623 43.478 9.04 9.04 45.26 2.90
3532 10694 5.769662 TCTTTTTAGTCCCTCGTGTACTACA 59.230 40.000 0.00 0.00 0.00 2.74
3533 10695 6.259550 TCTTTTTAGTCCCTCGTGTACTAC 57.740 41.667 0.00 0.00 0.00 2.73
3534 10696 6.660521 TCATCTTTTTAGTCCCTCGTGTACTA 59.339 38.462 0.00 0.00 0.00 1.82
3535 10697 5.479375 TCATCTTTTTAGTCCCTCGTGTACT 59.521 40.000 0.00 0.00 0.00 2.73
3536 10698 5.717119 TCATCTTTTTAGTCCCTCGTGTAC 58.283 41.667 0.00 0.00 0.00 2.90
3537 10699 5.988310 TCATCTTTTTAGTCCCTCGTGTA 57.012 39.130 0.00 0.00 0.00 2.90
3538 10700 4.884668 TCATCTTTTTAGTCCCTCGTGT 57.115 40.909 0.00 0.00 0.00 4.49
3539 10701 6.019801 CGTATTCATCTTTTTAGTCCCTCGTG 60.020 42.308 0.00 0.00 0.00 4.35
3540 10702 6.040878 CGTATTCATCTTTTTAGTCCCTCGT 58.959 40.000 0.00 0.00 0.00 4.18
3541 10703 5.050972 GCGTATTCATCTTTTTAGTCCCTCG 60.051 44.000 0.00 0.00 0.00 4.63
3542 10704 5.050972 CGCGTATTCATCTTTTTAGTCCCTC 60.051 44.000 0.00 0.00 0.00 4.30
3543 10705 4.809426 CGCGTATTCATCTTTTTAGTCCCT 59.191 41.667 0.00 0.00 0.00 4.20
3544 10706 4.552184 GCGCGTATTCATCTTTTTAGTCCC 60.552 45.833 8.43 0.00 0.00 4.46
3545 10707 4.515432 GCGCGTATTCATCTTTTTAGTCC 58.485 43.478 8.43 0.00 0.00 3.85
3546 10708 4.194121 CGCGCGTATTCATCTTTTTAGTC 58.806 43.478 24.19 0.00 0.00 2.59
3547 10709 3.615496 ACGCGCGTATTCATCTTTTTAGT 59.385 39.130 37.08 1.91 0.00 2.24
3548 10710 3.953853 CACGCGCGTATTCATCTTTTTAG 59.046 43.478 37.24 14.15 0.00 1.85
3549 10711 3.613299 TCACGCGCGTATTCATCTTTTTA 59.387 39.130 37.24 4.67 0.00 1.52
3550 10712 2.413796 TCACGCGCGTATTCATCTTTTT 59.586 40.909 37.24 4.71 0.00 1.94
3551 10713 1.996898 TCACGCGCGTATTCATCTTTT 59.003 42.857 37.24 4.96 0.00 2.27
3552 10714 1.635844 TCACGCGCGTATTCATCTTT 58.364 45.000 37.24 5.61 0.00 2.52
3553 10715 1.635844 TTCACGCGCGTATTCATCTT 58.364 45.000 37.24 6.52 0.00 2.40
3554 10716 1.323534 GTTTCACGCGCGTATTCATCT 59.676 47.619 37.24 7.43 0.00 2.90
3555 10717 1.591394 GGTTTCACGCGCGTATTCATC 60.591 52.381 37.24 21.68 0.00 2.92
3556 10718 0.372334 GGTTTCACGCGCGTATTCAT 59.628 50.000 37.24 9.28 0.00 2.57
3557 10719 0.668096 AGGTTTCACGCGCGTATTCA 60.668 50.000 37.24 17.10 0.00 2.57
3558 10720 1.270971 TAGGTTTCACGCGCGTATTC 58.729 50.000 37.24 23.74 0.00 1.75
3559 10721 1.712401 TTAGGTTTCACGCGCGTATT 58.288 45.000 37.24 18.55 0.00 1.89
3560 10722 1.712401 TTTAGGTTTCACGCGCGTAT 58.288 45.000 37.24 18.63 0.00 3.06
3561 10723 1.495878 TTTTAGGTTTCACGCGCGTA 58.504 45.000 37.24 19.65 0.00 4.42
3562 10724 0.656785 TTTTTAGGTTTCACGCGCGT 59.343 45.000 32.73 32.73 0.00 6.01
3563 10725 3.441246 TTTTTAGGTTTCACGCGCG 57.559 47.368 30.96 30.96 0.00 6.86
3593 10755 3.102276 GACGACACGCACAAATCAAAAA 58.898 40.909 0.00 0.00 0.00 1.94
3594 10756 2.539953 GGACGACACGCACAAATCAAAA 60.540 45.455 0.00 0.00 0.00 2.44
3595 10757 1.003331 GGACGACACGCACAAATCAAA 60.003 47.619 0.00 0.00 0.00 2.69
3596 10758 0.584396 GGACGACACGCACAAATCAA 59.416 50.000 0.00 0.00 0.00 2.57
3597 10759 0.249699 AGGACGACACGCACAAATCA 60.250 50.000 0.00 0.00 0.00 2.57
3598 10760 0.865769 AAGGACGACACGCACAAATC 59.134 50.000 0.00 0.00 0.00 2.17
3599 10761 0.586319 CAAGGACGACACGCACAAAT 59.414 50.000 0.00 0.00 0.00 2.32
3600 10762 2.010670 CAAGGACGACACGCACAAA 58.989 52.632 0.00 0.00 0.00 2.83
3601 10763 2.530497 GCAAGGACGACACGCACAA 61.530 57.895 0.00 0.00 0.00 3.33
3602 10764 2.964925 GCAAGGACGACACGCACA 60.965 61.111 0.00 0.00 0.00 4.57
3603 10765 4.059459 CGCAAGGACGACACGCAC 62.059 66.667 0.00 0.00 34.06 5.34
3606 10768 3.767230 CTGCGCAAGGACGACACG 61.767 66.667 13.05 0.00 38.28 4.49
3607 10769 2.355837 TCTGCGCAAGGACGACAC 60.356 61.111 13.05 0.00 38.28 3.67
3608 10770 2.049156 CTCTGCGCAAGGACGACA 60.049 61.111 13.05 0.00 38.28 4.35
3609 10771 2.811317 CCTCTGCGCAAGGACGAC 60.811 66.667 25.31 0.00 35.83 4.34
3610 10772 4.742201 GCCTCTGCGCAAGGACGA 62.742 66.667 30.45 16.86 35.83 4.20
3612 10774 3.984193 ATGGCCTCTGCGCAAGGAC 62.984 63.158 30.45 29.06 42.83 3.85
3613 10775 3.720601 ATGGCCTCTGCGCAAGGA 61.721 61.111 30.45 18.13 38.85 3.36
3614 10776 3.515286 CATGGCCTCTGCGCAAGG 61.515 66.667 25.23 25.23 38.85 3.61
3615 10777 4.189188 GCATGGCCTCTGCGCAAG 62.189 66.667 13.05 11.91 38.85 4.01
3616 10778 2.818291 TTAGCATGGCCTCTGCGCAA 62.818 55.000 13.05 16.49 44.38 4.85
3617 10779 2.613660 ATTAGCATGGCCTCTGCGCA 62.614 55.000 20.51 10.98 44.38 6.09
3618 10780 1.450531 AATTAGCATGGCCTCTGCGC 61.451 55.000 20.51 0.00 44.38 6.09
3619 10781 1.027357 AAATTAGCATGGCCTCTGCG 58.973 50.000 20.51 0.02 44.38 5.18
3620 10782 2.692041 AGAAAATTAGCATGGCCTCTGC 59.308 45.455 19.53 19.53 39.97 4.26
3621 10783 4.036498 CAGAGAAAATTAGCATGGCCTCTG 59.964 45.833 3.32 2.44 39.94 3.35
3622 10784 4.205587 CAGAGAAAATTAGCATGGCCTCT 58.794 43.478 3.32 0.64 0.00 3.69
3623 10785 3.950395 ACAGAGAAAATTAGCATGGCCTC 59.050 43.478 3.32 0.00 0.00 4.70
3624 10786 3.973425 ACAGAGAAAATTAGCATGGCCT 58.027 40.909 3.32 0.00 0.00 5.19
3625 10787 5.532406 TGATACAGAGAAAATTAGCATGGCC 59.468 40.000 0.00 0.00 0.00 5.36
3626 10788 6.624352 TGATACAGAGAAAATTAGCATGGC 57.376 37.500 0.00 0.00 0.00 4.40
3627 10789 9.064706 AGAATGATACAGAGAAAATTAGCATGG 57.935 33.333 0.00 0.00 0.00 3.66
3648 10810 8.978539 TCGAGGTCATTCGATAAAATTAGAATG 58.021 33.333 9.88 9.88 46.60 2.67
3661 10823 0.815734 GTCCCTTCGAGGTCATTCGA 59.184 55.000 0.00 0.00 46.86 3.71
3662 10824 0.530744 TGTCCCTTCGAGGTCATTCG 59.469 55.000 0.00 0.00 41.79 3.34
3663 10825 1.740718 GCTGTCCCTTCGAGGTCATTC 60.741 57.143 0.00 0.00 31.93 2.67
3664 10826 0.250513 GCTGTCCCTTCGAGGTCATT 59.749 55.000 0.00 0.00 31.93 2.57
3665 10827 0.616111 AGCTGTCCCTTCGAGGTCAT 60.616 55.000 0.00 0.00 31.93 3.06
3666 10828 0.039180 TAGCTGTCCCTTCGAGGTCA 59.961 55.000 0.00 0.00 31.93 4.02
3667 10829 1.404843 ATAGCTGTCCCTTCGAGGTC 58.595 55.000 0.00 0.00 31.93 3.85
3668 10830 2.588620 CTATAGCTGTCCCTTCGAGGT 58.411 52.381 0.00 0.00 31.93 3.85
3669 10831 1.271102 GCTATAGCTGTCCCTTCGAGG 59.729 57.143 17.75 0.00 38.21 4.63
3670 10832 2.715737 GCTATAGCTGTCCCTTCGAG 57.284 55.000 17.75 0.00 38.21 4.04
3682 10844 0.857935 CTCGTTGCTGCAGCTATAGC 59.142 55.000 36.61 19.29 42.66 2.97
3683 10845 2.215907 ACTCGTTGCTGCAGCTATAG 57.784 50.000 36.61 29.07 42.66 1.31
3684 10846 2.672961 AACTCGTTGCTGCAGCTATA 57.327 45.000 36.61 20.98 42.66 1.31
3685 10847 1.813513 AAACTCGTTGCTGCAGCTAT 58.186 45.000 36.61 13.95 42.66 2.97
3686 10848 2.448926 TAAACTCGTTGCTGCAGCTA 57.551 45.000 36.61 28.48 42.66 3.32
3687 10849 1.813513 ATAAACTCGTTGCTGCAGCT 58.186 45.000 36.61 18.21 42.66 4.24
3688 10850 3.740044 TTATAAACTCGTTGCTGCAGC 57.260 42.857 31.89 31.89 42.50 5.25
3689 10851 5.283060 AGTTTATAAACTCGTTGCTGCAG 57.717 39.130 22.49 10.11 45.65 4.41
3690 10852 6.788684 TTAGTTTATAAACTCGTTGCTGCA 57.211 33.333 29.47 10.20 45.65 4.41
3691 10853 8.601476 AGTATTAGTTTATAAACTCGTTGCTGC 58.399 33.333 29.47 14.77 45.65 5.25
3693 10855 9.310716 GGAGTATTAGTTTATAAACTCGTTGCT 57.689 33.333 29.47 22.49 45.65 3.91
3694 10856 8.546244 GGGAGTATTAGTTTATAAACTCGTTGC 58.454 37.037 29.47 19.18 45.65 4.17
3695 10857 9.813446 AGGGAGTATTAGTTTATAAACTCGTTG 57.187 33.333 29.47 0.00 45.65 4.10
3697 10859 9.418839 AGAGGGAGTATTAGTTTATAAACTCGT 57.581 33.333 29.47 21.61 45.65 4.18
3698 10860 9.680315 CAGAGGGAGTATTAGTTTATAAACTCG 57.320 37.037 29.47 8.46 45.65 4.18
3712 10874 9.454859 CAAGAATTTTAAGACAGAGGGAGTATT 57.545 33.333 0.00 0.00 0.00 1.89
3713 10875 8.606830 ACAAGAATTTTAAGACAGAGGGAGTAT 58.393 33.333 0.00 0.00 0.00 2.12
3714 10876 7.974504 ACAAGAATTTTAAGACAGAGGGAGTA 58.025 34.615 0.00 0.00 0.00 2.59
3715 10877 6.842676 ACAAGAATTTTAAGACAGAGGGAGT 58.157 36.000 0.00 0.00 0.00 3.85
3716 10878 7.164803 AGACAAGAATTTTAAGACAGAGGGAG 58.835 38.462 0.00 0.00 0.00 4.30
3717 10879 7.079451 AGACAAGAATTTTAAGACAGAGGGA 57.921 36.000 0.00 0.00 0.00 4.20
3718 10880 7.751768 AAGACAAGAATTTTAAGACAGAGGG 57.248 36.000 0.00 0.00 0.00 4.30
3719 10881 9.712305 TCTAAGACAAGAATTTTAAGACAGAGG 57.288 33.333 0.00 0.00 0.00 3.69
3770 10932 9.261180 CGGATGTATCAAGACACATTTTACTAT 57.739 33.333 0.00 0.00 35.55 2.12
3771 10933 8.255206 ACGGATGTATCAAGACACATTTTACTA 58.745 33.333 0.00 0.00 35.55 1.82
3772 10934 7.103641 ACGGATGTATCAAGACACATTTTACT 58.896 34.615 0.00 0.00 35.55 2.24
3773 10935 7.303634 ACGGATGTATCAAGACACATTTTAC 57.696 36.000 0.00 0.00 35.55 2.01
3774 10936 9.607988 AATACGGATGTATCAAGACACATTTTA 57.392 29.630 0.00 0.00 40.42 1.52
3775 10937 8.506168 AATACGGATGTATCAAGACACATTTT 57.494 30.769 0.00 0.00 40.42 1.82
3776 10938 8.506168 AAATACGGATGTATCAAGACACATTT 57.494 30.769 0.00 0.00 40.42 2.32
3777 10939 9.261180 CTAAATACGGATGTATCAAGACACATT 57.739 33.333 0.00 0.00 40.42 2.71
3778 10940 8.638873 TCTAAATACGGATGTATCAAGACACAT 58.361 33.333 0.00 0.00 40.42 3.21
3779 10941 7.919091 GTCTAAATACGGATGTATCAAGACACA 59.081 37.037 16.90 0.00 43.62 3.72
3780 10942 7.919091 TGTCTAAATACGGATGTATCAAGACAC 59.081 37.037 18.82 5.84 45.72 3.67
3781 10943 8.002984 TGTCTAAATACGGATGTATCAAGACA 57.997 34.615 18.82 18.82 46.81 3.41
3782 10944 8.867112 TTGTCTAAATACGGATGTATCAAGAC 57.133 34.615 15.87 15.87 43.97 3.01
3790 10952 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
3791 10953 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
3809 10971 8.726988 CCTCCGTTTCAAAATTATTGTCTTAGA 58.273 33.333 0.00 0.00 0.00 2.10
3810 10972 7.968405 CCCTCCGTTTCAAAATTATTGTCTTAG 59.032 37.037 0.00 0.00 0.00 2.18
3811 10973 7.666388 TCCCTCCGTTTCAAAATTATTGTCTTA 59.334 33.333 0.00 0.00 0.00 2.10
3812 10974 6.492087 TCCCTCCGTTTCAAAATTATTGTCTT 59.508 34.615 0.00 0.00 0.00 3.01
3813 10975 6.007703 TCCCTCCGTTTCAAAATTATTGTCT 58.992 36.000 0.00 0.00 0.00 3.41
3814 10976 6.072119 ACTCCCTCCGTTTCAAAATTATTGTC 60.072 38.462 0.00 0.00 0.00 3.18
3815 10977 5.773176 ACTCCCTCCGTTTCAAAATTATTGT 59.227 36.000 0.00 0.00 0.00 2.71
3816 10978 6.267496 ACTCCCTCCGTTTCAAAATTATTG 57.733 37.500 0.00 0.00 0.00 1.90
3817 10979 7.173032 AGTACTCCCTCCGTTTCAAAATTATT 58.827 34.615 0.00 0.00 0.00 1.40
3818 10980 6.718294 AGTACTCCCTCCGTTTCAAAATTAT 58.282 36.000 0.00 0.00 0.00 1.28
3819 10981 6.117975 AGTACTCCCTCCGTTTCAAAATTA 57.882 37.500 0.00 0.00 0.00 1.40
3820 10982 4.981812 AGTACTCCCTCCGTTTCAAAATT 58.018 39.130 0.00 0.00 0.00 1.82
3821 10983 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
3822 10984 4.426736 AAGTACTCCCTCCGTTTCAAAA 57.573 40.909 0.00 0.00 0.00 2.44
3823 10985 4.426736 AAAGTACTCCCTCCGTTTCAAA 57.573 40.909 0.00 0.00 0.00 2.69
3824 10986 4.426736 AAAAGTACTCCCTCCGTTTCAA 57.573 40.909 0.00 0.00 0.00 2.69
3825 10987 4.426736 AAAAAGTACTCCCTCCGTTTCA 57.573 40.909 0.00 0.00 0.00 2.69
3844 11006 6.148811 GTCCTGTATCTCCGAACAATGAAAAA 59.851 38.462 0.00 0.00 0.00 1.94
3845 11007 5.642063 GTCCTGTATCTCCGAACAATGAAAA 59.358 40.000 0.00 0.00 0.00 2.29
3846 11008 5.046591 AGTCCTGTATCTCCGAACAATGAAA 60.047 40.000 0.00 0.00 0.00 2.69
3847 11009 4.466370 AGTCCTGTATCTCCGAACAATGAA 59.534 41.667 0.00 0.00 0.00 2.57
3848 11010 4.023980 AGTCCTGTATCTCCGAACAATGA 58.976 43.478 0.00 0.00 0.00 2.57
3849 11011 4.392921 AGTCCTGTATCTCCGAACAATG 57.607 45.455 0.00 0.00 0.00 2.82
3850 11012 6.070995 TGTTTAGTCCTGTATCTCCGAACAAT 60.071 38.462 0.00 0.00 0.00 2.71
3851 11013 5.244402 TGTTTAGTCCTGTATCTCCGAACAA 59.756 40.000 0.00 0.00 0.00 2.83
3852 11014 4.768448 TGTTTAGTCCTGTATCTCCGAACA 59.232 41.667 0.00 0.00 0.00 3.18
3853 11015 5.320549 TGTTTAGTCCTGTATCTCCGAAC 57.679 43.478 0.00 0.00 0.00 3.95
3854 11016 5.105473 CCTTGTTTAGTCCTGTATCTCCGAA 60.105 44.000 0.00 0.00 0.00 4.30
3855 11017 4.401519 CCTTGTTTAGTCCTGTATCTCCGA 59.598 45.833 0.00 0.00 0.00 4.55
3856 11018 4.401519 TCCTTGTTTAGTCCTGTATCTCCG 59.598 45.833 0.00 0.00 0.00 4.63
3857 11019 5.657302 TCTCCTTGTTTAGTCCTGTATCTCC 59.343 44.000 0.00 0.00 0.00 3.71
3858 11020 6.777213 TCTCCTTGTTTAGTCCTGTATCTC 57.223 41.667 0.00 0.00 0.00 2.75
3859 11021 7.554959 TTTCTCCTTGTTTAGTCCTGTATCT 57.445 36.000 0.00 0.00 0.00 1.98
3860 11022 8.617290 TTTTTCTCCTTGTTTAGTCCTGTATC 57.383 34.615 0.00 0.00 0.00 2.24
3861 11023 9.232473 GATTTTTCTCCTTGTTTAGTCCTGTAT 57.768 33.333 0.00 0.00 0.00 2.29
3862 11024 8.437575 AGATTTTTCTCCTTGTTTAGTCCTGTA 58.562 33.333 0.00 0.00 0.00 2.74
3863 11025 7.290813 AGATTTTTCTCCTTGTTTAGTCCTGT 58.709 34.615 0.00 0.00 0.00 4.00
3864 11026 7.751768 AGATTTTTCTCCTTGTTTAGTCCTG 57.248 36.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.