Multiple sequence alignment - TraesCS3D01G115600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G115600 chr3D 100.000 2987 0 0 1 2987 68879613 68882599 0.000000e+00 5517.0
1 TraesCS3D01G115600 chr3D 91.156 294 22 2 2433 2725 123971458 123971168 2.160000e-106 396.0
2 TraesCS3D01G115600 chr3D 82.424 165 27 1 85 247 324076879 324076715 3.100000e-30 143.0
3 TraesCS3D01G115600 chr3B 92.979 1353 64 10 952 2289 115211763 115213099 0.000000e+00 1943.0
4 TraesCS3D01G115600 chr3A 91.615 644 34 3 1383 2026 80505841 80505218 0.000000e+00 872.0
5 TraesCS3D01G115600 chr3A 87.626 695 67 7 882 1570 80506131 80505450 0.000000e+00 789.0
6 TraesCS3D01G115600 chr3A 84.181 177 24 4 472 647 80506479 80506306 5.120000e-38 169.0
7 TraesCS3D01G115600 chr3A 86.806 144 11 4 2080 2216 80505114 80504972 1.430000e-33 154.0
8 TraesCS3D01G115600 chr6D 99.775 445 1 0 1 445 351239761 351240205 0.000000e+00 817.0
9 TraesCS3D01G115600 chr6D 91.554 296 19 3 2433 2725 345168373 345168665 1.290000e-108 403.0
10 TraesCS3D01G115600 chr6D 91.497 294 20 2 2433 2725 83723882 83723593 1.670000e-107 399.0
11 TraesCS3D01G115600 chr6D 91.275 298 18 3 2433 2725 259921187 259920893 1.670000e-107 399.0
12 TraesCS3D01G115600 chr6D 85.644 202 25 4 2725 2925 466896658 466896460 3.020000e-50 209.0
13 TraesCS3D01G115600 chrUn 98.438 448 7 0 1 448 29533165 29532718 0.000000e+00 789.0
14 TraesCS3D01G115600 chr7D 98.652 445 6 0 1 445 144020265 144020709 0.000000e+00 789.0
15 TraesCS3D01G115600 chr1D 98.427 445 7 0 1 445 206016562 206016118 0.000000e+00 784.0
16 TraesCS3D01G115600 chr1D 91.611 298 17 3 2433 2725 196353201 196353495 3.590000e-109 405.0
17 TraesCS3D01G115600 chr1D 91.497 294 21 2 2433 2725 85675770 85675480 4.640000e-108 401.0
18 TraesCS3D01G115600 chr2D 97.753 445 10 0 1 445 131142993 131143437 0.000000e+00 767.0
19 TraesCS3D01G115600 chr2D 92.096 291 19 2 2436 2725 478093517 478093804 9.970000e-110 407.0
20 TraesCS3D01G115600 chr2D 91.781 292 20 2 2437 2727 647791012 647791300 1.290000e-108 403.0
21 TraesCS3D01G115600 chr1B 94.207 328 14 3 2 329 205902131 205901809 2.070000e-136 496.0
22 TraesCS3D01G115600 chr1B 97.484 159 4 0 2 160 205899856 205900014 3.790000e-69 272.0
23 TraesCS3D01G115600 chr1B 93.827 162 10 0 159 320 205900172 205900333 8.270000e-61 244.0
24 TraesCS3D01G115600 chr1B 92.913 127 9 0 319 445 205900390 205900516 5.080000e-43 185.0
25 TraesCS3D01G115600 chr1B 100.000 28 0 0 408 435 645723324 645723297 5.000000e-03 52.8
26 TraesCS3D01G115600 chr4D 91.216 296 18 5 2433 2725 118668988 118668698 2.160000e-106 396.0
27 TraesCS3D01G115600 chr4B 82.591 247 24 5 79 325 43746835 43747062 1.820000e-47 200.0
28 TraesCS3D01G115600 chr4B 91.765 85 4 1 3 84 43746108 43746192 6.770000e-22 115.0
29 TraesCS3D01G115600 chr4A 91.765 85 4 1 3 84 586770248 586770332 6.770000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G115600 chr3D 68879613 68882599 2986 False 5517.000000 5517 100.000000 1 2987 1 chr3D.!!$F1 2986
1 TraesCS3D01G115600 chr3B 115211763 115213099 1336 False 1943.000000 1943 92.979000 952 2289 1 chr3B.!!$F1 1337
2 TraesCS3D01G115600 chr3A 80504972 80506479 1507 True 496.000000 872 87.557000 472 2216 4 chr3A.!!$R1 1744
3 TraesCS3D01G115600 chr1B 205899856 205900516 660 False 233.666667 272 94.741333 2 445 3 chr1B.!!$F1 443

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1203 0.235926 GCGCAACAGAGAAACAGTCC 59.764 55.0 0.3 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2362 2900 0.03392 TGAGATTGATCCCGATGCCG 59.966 55.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 7.441836 AGACAATCAACCCTTCAAAATTTACC 58.558 34.615 0.00 0.00 0.00 2.85
93 94 5.048364 CCTTCAAAATTTACCGGACACATCA 60.048 40.000 9.46 0.00 0.00 3.07
201 361 6.072673 GGATATTTTCCACGGTGACCAATATC 60.073 42.308 22.27 22.27 44.74 1.63
214 374 7.822334 CGGTGACCAATATCCATTAAGCTATAA 59.178 37.037 1.11 0.00 0.00 0.98
254 414 9.383519 GAACATGGAGATACATTTTCTCTTACA 57.616 33.333 0.00 0.00 39.65 2.41
291 451 8.429641 AGAATGTATGTCGACTATTTTATGGGT 58.570 33.333 17.92 0.00 0.00 4.51
320 480 1.064003 TTGGCAGAGGGCTTGTTAGA 58.936 50.000 0.00 0.00 44.01 2.10
345 563 3.530265 AGAGTTGACCGTGTGTTTGTA 57.470 42.857 0.00 0.00 0.00 2.41
377 595 1.067060 GACAACTGGCAAGGTTGGAAC 59.933 52.381 19.76 9.82 45.61 3.62
399 617 5.957798 ACACCAACAATGATGATGAATGAC 58.042 37.500 0.00 0.00 31.40 3.06
408 626 5.313520 TGATGATGAATGACGTGCAAATT 57.686 34.783 0.00 0.00 0.00 1.82
421 639 4.222886 CGTGCAAATTTATTGTTCCGTGA 58.777 39.130 0.00 0.00 0.00 4.35
435 653 4.307908 GTGACAACGCACGGGCAC 62.308 66.667 11.77 0.00 41.24 5.01
439 657 1.897398 GACAACGCACGGGCACTAAG 61.897 60.000 11.77 0.00 41.24 2.18
445 663 0.806492 GCACGGGCACTAAGCTAGTC 60.806 60.000 3.77 0.00 44.79 2.59
446 664 0.530744 CACGGGCACTAAGCTAGTCA 59.469 55.000 0.00 0.00 44.79 3.41
447 665 1.137086 CACGGGCACTAAGCTAGTCAT 59.863 52.381 0.00 0.00 44.79 3.06
448 666 1.409427 ACGGGCACTAAGCTAGTCATC 59.591 52.381 0.00 0.00 44.79 2.92
449 667 1.269831 CGGGCACTAAGCTAGTCATCC 60.270 57.143 0.00 0.00 44.79 3.51
450 668 1.269831 GGGCACTAAGCTAGTCATCCG 60.270 57.143 0.00 0.00 44.79 4.18
451 669 1.409427 GGCACTAAGCTAGTCATCCGT 59.591 52.381 0.00 0.00 44.79 4.69
452 670 2.621998 GGCACTAAGCTAGTCATCCGTA 59.378 50.000 0.00 0.00 44.79 4.02
453 671 3.067742 GGCACTAAGCTAGTCATCCGTAA 59.932 47.826 0.00 0.00 44.79 3.18
454 672 4.441079 GGCACTAAGCTAGTCATCCGTAAA 60.441 45.833 0.00 0.00 44.79 2.01
455 673 5.107133 GCACTAAGCTAGTCATCCGTAAAA 58.893 41.667 0.00 0.00 41.15 1.52
456 674 5.005490 GCACTAAGCTAGTCATCCGTAAAAC 59.995 44.000 0.00 0.00 41.15 2.43
457 675 6.097356 CACTAAGCTAGTCATCCGTAAAACA 58.903 40.000 0.00 0.00 36.76 2.83
458 676 6.757010 CACTAAGCTAGTCATCCGTAAAACAT 59.243 38.462 0.00 0.00 36.76 2.71
459 677 6.979238 ACTAAGCTAGTCATCCGTAAAACATC 59.021 38.462 0.00 0.00 32.47 3.06
460 678 5.339008 AGCTAGTCATCCGTAAAACATCA 57.661 39.130 0.00 0.00 0.00 3.07
461 679 5.109903 AGCTAGTCATCCGTAAAACATCAC 58.890 41.667 0.00 0.00 0.00 3.06
462 680 4.868171 GCTAGTCATCCGTAAAACATCACA 59.132 41.667 0.00 0.00 0.00 3.58
463 681 5.220416 GCTAGTCATCCGTAAAACATCACAC 60.220 44.000 0.00 0.00 0.00 3.82
464 682 4.894784 AGTCATCCGTAAAACATCACACT 58.105 39.130 0.00 0.00 0.00 3.55
465 683 4.929808 AGTCATCCGTAAAACATCACACTC 59.070 41.667 0.00 0.00 0.00 3.51
466 684 4.929808 GTCATCCGTAAAACATCACACTCT 59.070 41.667 0.00 0.00 0.00 3.24
467 685 5.408604 GTCATCCGTAAAACATCACACTCTT 59.591 40.000 0.00 0.00 0.00 2.85
468 686 5.995282 TCATCCGTAAAACATCACACTCTTT 59.005 36.000 0.00 0.00 0.00 2.52
469 687 6.485313 TCATCCGTAAAACATCACACTCTTTT 59.515 34.615 0.00 0.00 0.00 2.27
470 688 6.687081 TCCGTAAAACATCACACTCTTTTT 57.313 33.333 0.00 0.00 0.00 1.94
527 745 7.834881 TTGATGGTCTTATATTCCTAGACGT 57.165 36.000 0.00 0.00 39.30 4.34
531 749 5.009710 TGGTCTTATATTCCTAGACGTGCAG 59.990 44.000 0.00 0.00 39.30 4.41
537 755 1.095600 TCCTAGACGTGCAGCTACTG 58.904 55.000 0.00 0.00 34.12 2.74
544 762 2.419324 GACGTGCAGCTACTGTAGTACT 59.581 50.000 15.71 0.00 33.43 2.73
552 770 4.042174 AGCTACTGTAGTACTCCCTCTCT 58.958 47.826 15.71 0.00 0.00 3.10
555 773 6.158344 AGCTACTGTAGTACTCCCTCTCTAAA 59.842 42.308 15.71 0.00 0.00 1.85
559 777 8.667592 ACTGTAGTACTCCCTCTCTAAATTTT 57.332 34.615 0.00 0.00 0.00 1.82
560 778 9.102453 ACTGTAGTACTCCCTCTCTAAATTTTT 57.898 33.333 0.00 0.00 0.00 1.94
587 805 7.854934 AAGATCTTTTATATACGAGTGCGAC 57.145 36.000 0.88 0.00 41.64 5.19
593 811 8.781196 TCTTTTATATACGAGTGCGACTAGATT 58.219 33.333 0.00 0.00 41.64 2.40
595 813 9.740239 TTTTATATACGAGTGCGACTAGATTTT 57.260 29.630 0.00 0.00 41.64 1.82
599 817 4.660105 ACGAGTGCGACTAGATTTTAGTC 58.340 43.478 0.00 4.64 41.64 2.59
637 855 6.369065 ACCGAGTCTCAATTAAATGACAAGAC 59.631 38.462 0.00 4.13 32.41 3.01
742 960 5.392286 ACTTCGTTAAGTCTCAATCGACTC 58.608 41.667 0.00 0.00 42.42 3.36
755 973 9.176181 GTCTCAATCGACTCAGATTTAATAGTC 57.824 37.037 0.00 0.00 38.66 2.59
757 975 8.239038 TCAATCGACTCAGATTTAATAGTCCT 57.761 34.615 0.00 0.00 38.66 3.85
758 976 8.138074 TCAATCGACTCAGATTTAATAGTCCTG 58.862 37.037 0.00 0.00 38.66 3.86
760 978 7.406031 TCGACTCAGATTTAATAGTCCTGTT 57.594 36.000 0.00 0.00 35.93 3.16
762 980 7.759886 TCGACTCAGATTTAATAGTCCTGTTTG 59.240 37.037 0.00 0.00 35.93 2.93
763 981 7.545965 CGACTCAGATTTAATAGTCCTGTTTGT 59.454 37.037 0.00 0.00 35.93 2.83
826 1065 8.522542 AGATCACTAATTACTACTTTCTCCGT 57.477 34.615 0.00 0.00 0.00 4.69
827 1066 8.968969 AGATCACTAATTACTACTTTCTCCGTT 58.031 33.333 0.00 0.00 0.00 4.44
828 1067 9.235537 GATCACTAATTACTACTTTCTCCGTTC 57.764 37.037 0.00 0.00 0.00 3.95
829 1068 8.345724 TCACTAATTACTACTTTCTCCGTTCT 57.654 34.615 0.00 0.00 0.00 3.01
830 1069 8.800332 TCACTAATTACTACTTTCTCCGTTCTT 58.200 33.333 0.00 0.00 0.00 2.52
839 1078 9.420551 ACTACTTTCTCCGTTCTTAAATAAGTG 57.579 33.333 0.00 0.00 34.93 3.16
840 1079 9.420551 CTACTTTCTCCGTTCTTAAATAAGTGT 57.579 33.333 0.00 0.00 34.93 3.55
841 1080 8.307921 ACTTTCTCCGTTCTTAAATAAGTGTC 57.692 34.615 0.46 0.00 34.93 3.67
842 1081 8.148999 ACTTTCTCCGTTCTTAAATAAGTGTCT 58.851 33.333 0.46 0.00 34.93 3.41
843 1082 8.530269 TTTCTCCGTTCTTAAATAAGTGTCTC 57.470 34.615 0.46 0.00 34.93 3.36
844 1083 7.223260 TCTCCGTTCTTAAATAAGTGTCTCA 57.777 36.000 0.46 0.00 34.93 3.27
845 1084 7.663827 TCTCCGTTCTTAAATAAGTGTCTCAA 58.336 34.615 0.46 0.00 34.93 3.02
846 1085 8.311836 TCTCCGTTCTTAAATAAGTGTCTCAAT 58.688 33.333 0.46 0.00 34.93 2.57
847 1086 8.475331 TCCGTTCTTAAATAAGTGTCTCAATC 57.525 34.615 0.46 0.00 34.93 2.67
848 1087 8.311836 TCCGTTCTTAAATAAGTGTCTCAATCT 58.688 33.333 0.46 0.00 34.93 2.40
849 1088 8.936864 CCGTTCTTAAATAAGTGTCTCAATCTT 58.063 33.333 0.46 0.00 34.93 2.40
900 1139 9.998106 ATGTATATAAACGCTCCTTTGATACTT 57.002 29.630 0.00 0.00 0.00 2.24
933 1173 8.606040 TGCCAAAGAAAAGGATAAATTTTCAG 57.394 30.769 12.23 3.75 45.10 3.02
949 1189 1.106285 TCAGATAGAGCTCAGCGCAA 58.894 50.000 17.77 0.00 42.61 4.85
963 1203 0.235926 GCGCAACAGAGAAACAGTCC 59.764 55.000 0.30 0.00 0.00 3.85
1077 1321 2.507102 CCGCCGCAGACTGTACAG 60.507 66.667 21.44 21.44 0.00 2.74
1271 1515 3.786586 GCTCTGCTGCTGCGTCAC 61.787 66.667 11.21 0.00 43.34 3.67
1299 1543 4.838486 CTCCAGCGGCTCGACGTC 62.838 72.222 5.18 5.18 35.98 4.34
1306 1550 4.808238 GGCTCGACGTCGACGACC 62.808 72.222 41.52 29.34 44.22 4.79
1307 1551 4.081030 GCTCGACGTCGACGACCA 62.081 66.667 41.52 24.72 44.22 4.02
1308 1552 2.202146 CTCGACGTCGACGACCAC 60.202 66.667 41.52 25.88 44.22 4.16
1309 1553 3.642008 CTCGACGTCGACGACCACC 62.642 68.421 41.52 22.36 44.22 4.61
1310 1554 4.748679 CGACGTCGACGACCACCC 62.749 72.222 41.52 20.80 43.02 4.61
1311 1555 4.748679 GACGTCGACGACCACCCG 62.749 72.222 41.52 15.51 43.02 5.28
1351 1595 4.760047 GGTCCATGCTCGCCGTGT 62.760 66.667 0.00 0.00 0.00 4.49
1352 1596 3.490759 GTCCATGCTCGCCGTGTG 61.491 66.667 0.00 0.00 0.00 3.82
1353 1597 4.758251 TCCATGCTCGCCGTGTGG 62.758 66.667 0.00 0.00 38.77 4.17
1363 1607 4.742201 CCGTGTGGGCAGTCTCGG 62.742 72.222 0.00 0.00 35.14 4.63
1364 1608 3.991051 CGTGTGGGCAGTCTCGGT 61.991 66.667 0.00 0.00 0.00 4.69
1365 1609 2.357517 GTGTGGGCAGTCTCGGTG 60.358 66.667 0.00 0.00 0.00 4.94
1366 1610 4.314440 TGTGGGCAGTCTCGGTGC 62.314 66.667 0.00 0.00 40.42 5.01
1367 1611 4.008933 GTGGGCAGTCTCGGTGCT 62.009 66.667 0.00 0.00 40.97 4.40
1368 1612 4.007644 TGGGCAGTCTCGGTGCTG 62.008 66.667 0.00 0.00 40.97 4.41
1369 1613 4.008933 GGGCAGTCTCGGTGCTGT 62.009 66.667 0.00 0.00 40.97 4.40
1370 1614 2.031163 GGCAGTCTCGGTGCTGTT 59.969 61.111 0.00 0.00 40.97 3.16
1371 1615 2.029844 GGCAGTCTCGGTGCTGTTC 61.030 63.158 0.00 0.00 40.97 3.18
1372 1616 2.029844 GCAGTCTCGGTGCTGTTCC 61.030 63.158 0.00 0.00 37.96 3.62
1373 1617 1.668294 CAGTCTCGGTGCTGTTCCT 59.332 57.895 0.00 0.00 0.00 3.36
1374 1618 0.389166 CAGTCTCGGTGCTGTTCCTC 60.389 60.000 0.00 0.00 0.00 3.71
1375 1619 1.444553 GTCTCGGTGCTGTTCCTCG 60.445 63.158 0.00 0.00 0.00 4.63
1376 1620 2.811317 CTCGGTGCTGTTCCTCGC 60.811 66.667 0.00 0.00 0.00 5.03
1377 1621 3.288308 CTCGGTGCTGTTCCTCGCT 62.288 63.158 0.00 0.00 0.00 4.93
1378 1622 1.934220 CTCGGTGCTGTTCCTCGCTA 61.934 60.000 0.00 0.00 0.00 4.26
1379 1623 1.805945 CGGTGCTGTTCCTCGCTAC 60.806 63.158 0.00 0.00 0.00 3.58
1380 1624 1.448013 GGTGCTGTTCCTCGCTACC 60.448 63.158 0.00 0.00 0.00 3.18
1381 1625 1.592223 GTGCTGTTCCTCGCTACCT 59.408 57.895 0.00 0.00 0.00 3.08
1382 1626 0.737715 GTGCTGTTCCTCGCTACCTG 60.738 60.000 0.00 0.00 0.00 4.00
1383 1627 1.811679 GCTGTTCCTCGCTACCTGC 60.812 63.158 0.00 0.00 38.57 4.85
1384 1628 1.893786 CTGTTCCTCGCTACCTGCT 59.106 57.895 0.00 0.00 40.11 4.24
1385 1629 0.247736 CTGTTCCTCGCTACCTGCTT 59.752 55.000 0.00 0.00 40.11 3.91
1386 1630 0.246635 TGTTCCTCGCTACCTGCTTC 59.753 55.000 0.00 0.00 40.11 3.86
1387 1631 0.802607 GTTCCTCGCTACCTGCTTCG 60.803 60.000 0.00 0.00 40.11 3.79
1388 1632 2.558554 TTCCTCGCTACCTGCTTCGC 62.559 60.000 0.00 0.00 40.11 4.70
1389 1633 2.951745 CTCGCTACCTGCTTCGCG 60.952 66.667 0.00 0.00 46.28 5.87
1390 1634 3.685214 CTCGCTACCTGCTTCGCGT 62.685 63.158 5.77 0.00 45.25 6.01
1391 1635 3.545481 CGCTACCTGCTTCGCGTG 61.545 66.667 5.77 1.17 40.64 5.34
1392 1636 3.188786 GCTACCTGCTTCGCGTGG 61.189 66.667 5.77 4.70 38.95 4.94
1393 1637 2.509336 CTACCTGCTTCGCGTGGG 60.509 66.667 5.77 5.06 0.00 4.61
1394 1638 4.752879 TACCTGCTTCGCGTGGGC 62.753 66.667 5.77 9.83 0.00 5.36
1442 1686 3.103911 CCTCGCGTTCGTGGTCAC 61.104 66.667 5.77 0.00 42.56 3.67
1461 1705 2.968206 ACCTACTGGTTCGTCGCC 59.032 61.111 0.00 0.00 46.05 5.54
1462 1706 2.202570 CCTACTGGTTCGTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
1463 1707 2.564975 CTACTGGTTCGTCGCCGT 59.435 61.111 0.00 0.00 35.01 5.68
1464 1708 1.800315 CTACTGGTTCGTCGCCGTG 60.800 63.158 0.00 0.00 35.01 4.94
1465 1709 3.902162 TACTGGTTCGTCGCCGTGC 62.902 63.158 0.00 0.00 35.01 5.34
1468 1712 4.719369 GGTTCGTCGCCGTGCTCT 62.719 66.667 0.00 0.00 35.01 4.09
1469 1713 3.470567 GTTCGTCGCCGTGCTCTG 61.471 66.667 0.00 0.00 35.01 3.35
1476 1720 4.756458 GCCGTGCTCTGCTGCTCT 62.756 66.667 0.00 0.00 0.00 4.09
1477 1721 2.814341 CCGTGCTCTGCTGCTCTG 60.814 66.667 0.00 0.00 0.00 3.35
1478 1722 2.048409 CGTGCTCTGCTGCTCTGT 60.048 61.111 0.00 0.00 0.00 3.41
1479 1723 2.093473 CGTGCTCTGCTGCTCTGTC 61.093 63.158 0.00 0.00 0.00 3.51
1480 1724 1.292860 GTGCTCTGCTGCTCTGTCT 59.707 57.895 0.00 0.00 0.00 3.41
1481 1725 1.015085 GTGCTCTGCTGCTCTGTCTG 61.015 60.000 0.00 0.00 0.00 3.51
1482 1726 1.448189 GCTCTGCTGCTCTGTCTGG 60.448 63.158 0.00 0.00 0.00 3.86
1483 1727 1.886253 GCTCTGCTGCTCTGTCTGGA 61.886 60.000 0.00 0.00 0.00 3.86
1484 1728 0.607112 CTCTGCTGCTCTGTCTGGAA 59.393 55.000 0.00 0.00 0.00 3.53
1485 1729 0.607112 TCTGCTGCTCTGTCTGGAAG 59.393 55.000 0.00 0.00 0.00 3.46
1486 1730 1.004080 TGCTGCTCTGTCTGGAAGC 60.004 57.895 0.00 0.00 0.00 3.86
1487 1731 1.296068 GCTGCTCTGTCTGGAAGCT 59.704 57.895 0.00 0.00 0.00 3.74
1488 1732 0.740516 GCTGCTCTGTCTGGAAGCTC 60.741 60.000 0.00 0.00 0.00 4.09
1489 1733 0.108233 CTGCTCTGTCTGGAAGCTCC 60.108 60.000 0.00 0.00 36.96 4.70
1490 1734 0.833409 TGCTCTGTCTGGAAGCTCCA 60.833 55.000 5.03 5.03 45.98 3.86
1671 2119 0.750546 ACTACCTCATCGCCGTGCTA 60.751 55.000 0.00 0.00 0.00 3.49
1892 2340 5.049680 GCCTCGTGTACTTCTTCATTTTCAA 60.050 40.000 0.00 0.00 0.00 2.69
1899 2347 4.549458 ACTTCTTCATTTTCAACCGCATG 58.451 39.130 0.00 0.00 0.00 4.06
1974 2422 2.505982 CACGAGCAATCCCCGGAT 59.494 61.111 0.73 0.00 36.23 4.18
1988 2442 1.834378 CGGATCAGAGGGCCTAGCA 60.834 63.158 5.73 0.00 0.00 3.49
1989 2443 1.190833 CGGATCAGAGGGCCTAGCAT 61.191 60.000 5.73 0.00 0.00 3.79
1990 2444 1.892769 CGGATCAGAGGGCCTAGCATA 60.893 57.143 5.73 0.00 0.00 3.14
2090 2611 7.700322 TACTGTATAGTACTACACGTGTAGC 57.300 40.000 41.63 30.57 43.18 3.58
2235 2772 4.892934 TGGTCTGGCTGAATTTTTACTTGT 59.107 37.500 0.00 0.00 0.00 3.16
2236 2773 5.221224 TGGTCTGGCTGAATTTTTACTTGTG 60.221 40.000 0.00 0.00 0.00 3.33
2262 2799 4.215109 GGCATTGGTATTACCTCATGGTT 58.785 43.478 19.25 0.00 46.05 3.67
2276 2814 4.261322 CCTCATGGTTACATTAGCACATGC 60.261 45.833 0.00 0.00 36.54 4.06
2281 2819 4.196193 GGTTACATTAGCACATGCACCTA 58.804 43.478 6.64 0.00 45.16 3.08
2303 2841 2.805845 CATCAGCTGCACCATTTAAGC 58.194 47.619 9.47 0.00 35.86 3.09
2304 2842 2.205022 TCAGCTGCACCATTTAAGCT 57.795 45.000 9.47 0.00 46.70 3.74
2305 2843 2.086869 TCAGCTGCACCATTTAAGCTC 58.913 47.619 9.47 0.00 44.00 4.09
2306 2844 1.814394 CAGCTGCACCATTTAAGCTCA 59.186 47.619 0.00 0.00 44.00 4.26
2307 2845 1.815003 AGCTGCACCATTTAAGCTCAC 59.185 47.619 1.02 0.00 42.20 3.51
2308 2846 1.466360 GCTGCACCATTTAAGCTCACG 60.466 52.381 0.00 0.00 32.82 4.35
2309 2847 2.076100 CTGCACCATTTAAGCTCACGA 58.924 47.619 0.00 0.00 0.00 4.35
2310 2848 1.804151 TGCACCATTTAAGCTCACGAC 59.196 47.619 0.00 0.00 0.00 4.34
2311 2849 1.201921 GCACCATTTAAGCTCACGACG 60.202 52.381 0.00 0.00 0.00 5.12
2312 2850 2.333926 CACCATTTAAGCTCACGACGA 58.666 47.619 0.00 0.00 0.00 4.20
2313 2851 2.092211 CACCATTTAAGCTCACGACGAC 59.908 50.000 0.00 0.00 0.00 4.34
2314 2852 2.029290 ACCATTTAAGCTCACGACGACT 60.029 45.455 0.00 0.00 0.00 4.18
2315 2853 2.993899 CCATTTAAGCTCACGACGACTT 59.006 45.455 0.00 2.26 0.00 3.01
2316 2854 3.432252 CCATTTAAGCTCACGACGACTTT 59.568 43.478 0.00 0.00 0.00 2.66
2317 2855 4.386230 CATTTAAGCTCACGACGACTTTG 58.614 43.478 0.00 0.00 0.00 2.77
2318 2856 1.415374 TAAGCTCACGACGACTTTGC 58.585 50.000 0.00 0.00 0.00 3.68
2319 2857 1.222115 AAGCTCACGACGACTTTGCC 61.222 55.000 0.00 0.00 0.00 4.52
2320 2858 2.668280 GCTCACGACGACTTTGCCC 61.668 63.158 0.00 0.00 0.00 5.36
2321 2859 2.355363 TCACGACGACTTTGCCCG 60.355 61.111 0.00 0.00 0.00 6.13
2322 2860 3.411351 CACGACGACTTTGCCCGG 61.411 66.667 0.00 0.00 0.00 5.73
2329 2867 4.344865 ACTTTGCCCGGCGTCCAT 62.345 61.111 6.01 0.00 0.00 3.41
2330 2868 3.814268 CTTTGCCCGGCGTCCATG 61.814 66.667 6.01 0.00 0.00 3.66
2339 2877 4.408821 GCGTCCATGGAGCCCACA 62.409 66.667 16.81 0.00 35.80 4.17
2340 2878 2.124983 CGTCCATGGAGCCCACAG 60.125 66.667 16.81 0.00 35.80 3.66
2341 2879 2.659063 CGTCCATGGAGCCCACAGA 61.659 63.158 16.81 0.00 35.80 3.41
2342 2880 1.222936 GTCCATGGAGCCCACAGAG 59.777 63.158 16.81 0.00 35.80 3.35
2343 2881 1.080907 TCCATGGAGCCCACAGAGA 59.919 57.895 11.44 0.00 35.80 3.10
2344 2882 1.222936 CCATGGAGCCCACAGAGAC 59.777 63.158 5.56 0.00 35.80 3.36
2345 2883 1.222936 CATGGAGCCCACAGAGACC 59.777 63.158 0.00 0.00 35.80 3.85
2346 2884 1.081833 ATGGAGCCCACAGAGACCT 59.918 57.895 0.00 0.00 35.80 3.85
2347 2885 0.980231 ATGGAGCCCACAGAGACCTC 60.980 60.000 0.00 0.00 35.80 3.85
2348 2886 1.305718 GGAGCCCACAGAGACCTCT 60.306 63.158 0.00 0.00 41.37 3.69
2349 2887 0.907230 GGAGCCCACAGAGACCTCTT 60.907 60.000 0.00 0.00 37.98 2.85
2350 2888 0.980423 GAGCCCACAGAGACCTCTTT 59.020 55.000 0.00 0.00 37.98 2.52
2351 2889 0.980423 AGCCCACAGAGACCTCTTTC 59.020 55.000 0.00 0.00 37.98 2.62
2352 2890 0.035915 GCCCACAGAGACCTCTTTCC 60.036 60.000 0.00 0.00 37.98 3.13
2353 2891 1.650528 CCCACAGAGACCTCTTTCCT 58.349 55.000 0.00 0.00 37.98 3.36
2354 2892 1.277557 CCCACAGAGACCTCTTTCCTG 59.722 57.143 0.00 0.00 37.98 3.86
2355 2893 1.277557 CCACAGAGACCTCTTTCCTGG 59.722 57.143 0.00 0.00 37.98 4.45
2356 2894 1.974236 CACAGAGACCTCTTTCCTGGT 59.026 52.381 0.00 0.00 37.98 4.00
2359 2897 4.600207 GACCTCTTTCCTGGTCGC 57.400 61.111 0.00 0.00 42.51 5.19
2360 2898 1.079057 GACCTCTTTCCTGGTCGCC 60.079 63.158 0.00 0.00 42.51 5.54
2361 2899 1.827399 GACCTCTTTCCTGGTCGCCA 61.827 60.000 0.00 0.00 42.51 5.69
2362 2900 1.376037 CCTCTTTCCTGGTCGCCAC 60.376 63.158 0.00 0.00 0.00 5.01
2363 2901 1.738099 CTCTTTCCTGGTCGCCACG 60.738 63.158 0.00 0.00 0.00 4.94
2364 2902 2.742372 CTTTCCTGGTCGCCACGG 60.742 66.667 0.00 2.29 0.00 4.94
2375 2913 4.545706 GCCACGGCATCGGGATCA 62.546 66.667 2.36 0.00 43.65 2.92
2376 2914 2.189257 CCACGGCATCGGGATCAA 59.811 61.111 0.00 0.00 43.65 2.57
2377 2915 1.227943 CCACGGCATCGGGATCAAT 60.228 57.895 0.00 0.00 43.65 2.57
2378 2916 1.230635 CCACGGCATCGGGATCAATC 61.231 60.000 0.00 0.00 43.65 2.67
2379 2917 0.250038 CACGGCATCGGGATCAATCT 60.250 55.000 0.00 0.00 43.65 2.40
2380 2918 0.034059 ACGGCATCGGGATCAATCTC 59.966 55.000 0.00 0.00 41.39 2.75
2381 2919 0.033920 CGGCATCGGGATCAATCTCA 59.966 55.000 0.00 0.00 0.00 3.27
2382 2920 1.805869 GGCATCGGGATCAATCTCAG 58.194 55.000 0.00 0.00 0.00 3.35
2383 2921 1.071385 GGCATCGGGATCAATCTCAGT 59.929 52.381 0.00 0.00 0.00 3.41
2384 2922 2.411904 GCATCGGGATCAATCTCAGTC 58.588 52.381 0.00 0.00 0.00 3.51
2385 2923 2.869636 GCATCGGGATCAATCTCAGTCC 60.870 54.545 0.00 0.00 0.00 3.85
2386 2924 1.032794 TCGGGATCAATCTCAGTCCG 58.967 55.000 0.00 0.00 37.61 4.79
2387 2925 0.747255 CGGGATCAATCTCAGTCCGT 59.253 55.000 0.00 0.00 0.00 4.69
2388 2926 1.954382 CGGGATCAATCTCAGTCCGTA 59.046 52.381 0.00 0.00 0.00 4.02
2389 2927 2.361119 CGGGATCAATCTCAGTCCGTAA 59.639 50.000 0.00 0.00 0.00 3.18
2390 2928 3.551046 CGGGATCAATCTCAGTCCGTAAG 60.551 52.174 0.00 0.00 0.00 2.34
2391 2929 3.637229 GGGATCAATCTCAGTCCGTAAGA 59.363 47.826 0.00 0.00 43.02 2.10
2392 2930 4.261825 GGGATCAATCTCAGTCCGTAAGAG 60.262 50.000 0.00 0.00 43.02 2.85
2393 2931 3.784701 TCAATCTCAGTCCGTAAGAGC 57.215 47.619 0.00 0.00 43.02 4.09
2394 2932 3.089284 TCAATCTCAGTCCGTAAGAGCA 58.911 45.455 0.00 0.00 43.02 4.26
2395 2933 3.701542 TCAATCTCAGTCCGTAAGAGCAT 59.298 43.478 0.00 0.00 43.02 3.79
2396 2934 4.047822 CAATCTCAGTCCGTAAGAGCATC 58.952 47.826 0.00 0.00 43.02 3.91
2417 2955 9.844257 AGCATCTATAGCAGATCTTTTAAAAGT 57.156 29.630 23.75 13.46 42.40 2.66
2424 2962 9.755122 ATAGCAGATCTTTTAAAAGTTACCCTT 57.245 29.630 23.75 10.67 37.31 3.95
2426 2964 9.582648 AGCAGATCTTTTAAAAGTTACCCTTAA 57.417 29.630 23.75 5.44 37.31 1.85
2446 2984 9.557061 CCCTTAAAAATGAGTATAAGACTACCC 57.443 37.037 0.00 0.00 39.06 3.69
2529 3067 9.171877 AGTAAGCAATAAATGAAGAAAGAGAGG 57.828 33.333 0.00 0.00 0.00 3.69
2530 3068 9.167311 GTAAGCAATAAATGAAGAAAGAGAGGA 57.833 33.333 0.00 0.00 0.00 3.71
2531 3069 8.641498 AAGCAATAAATGAAGAAAGAGAGGAA 57.359 30.769 0.00 0.00 0.00 3.36
2532 3070 8.641498 AGCAATAAATGAAGAAAGAGAGGAAA 57.359 30.769 0.00 0.00 0.00 3.13
2533 3071 8.738106 AGCAATAAATGAAGAAAGAGAGGAAAG 58.262 33.333 0.00 0.00 0.00 2.62
2534 3072 8.518702 GCAATAAATGAAGAAAGAGAGGAAAGT 58.481 33.333 0.00 0.00 0.00 2.66
2540 3078 9.713713 AATGAAGAAAGAGAGGAAAGTAGTAAC 57.286 33.333 0.00 0.00 0.00 2.50
2541 3079 8.246430 TGAAGAAAGAGAGGAAAGTAGTAACA 57.754 34.615 0.00 0.00 0.00 2.41
2542 3080 8.871125 TGAAGAAAGAGAGGAAAGTAGTAACAT 58.129 33.333 0.00 0.00 0.00 2.71
2545 3083 8.471609 AGAAAGAGAGGAAAGTAGTAACATAGC 58.528 37.037 0.00 0.00 0.00 2.97
2546 3084 7.964666 AAGAGAGGAAAGTAGTAACATAGCT 57.035 36.000 0.00 0.00 0.00 3.32
2547 3085 9.476928 AAAGAGAGGAAAGTAGTAACATAGCTA 57.523 33.333 0.00 0.00 0.00 3.32
2548 3086 8.454570 AGAGAGGAAAGTAGTAACATAGCTAC 57.545 38.462 0.00 0.00 38.20 3.58
2549 3087 8.276477 AGAGAGGAAAGTAGTAACATAGCTACT 58.724 37.037 0.00 0.00 46.79 2.57
2550 3088 9.558396 GAGAGGAAAGTAGTAACATAGCTACTA 57.442 37.037 0.00 0.00 44.84 1.82
2551 3089 9.563748 AGAGGAAAGTAGTAACATAGCTACTAG 57.436 37.037 0.00 0.00 44.84 2.57
2552 3090 9.341078 GAGGAAAGTAGTAACATAGCTACTAGT 57.659 37.037 0.00 0.00 44.84 2.57
2553 3091 9.697990 AGGAAAGTAGTAACATAGCTACTAGTT 57.302 33.333 0.00 7.56 44.84 2.24
2606 3144 7.661536 TCAAGTTAAGATGTGTCTATAGCCT 57.338 36.000 0.00 0.00 33.30 4.58
2607 3145 8.762481 TCAAGTTAAGATGTGTCTATAGCCTA 57.238 34.615 0.00 0.00 33.30 3.93
2608 3146 9.197306 TCAAGTTAAGATGTGTCTATAGCCTAA 57.803 33.333 0.00 0.00 33.30 2.69
2609 3147 9.988815 CAAGTTAAGATGTGTCTATAGCCTAAT 57.011 33.333 0.00 0.00 33.30 1.73
2619 3157 9.764363 TGTGTCTATAGCCTAATAAATGAAGTG 57.236 33.333 0.00 0.00 0.00 3.16
2620 3158 9.765795 GTGTCTATAGCCTAATAAATGAAGTGT 57.234 33.333 0.00 0.00 0.00 3.55
2623 3161 9.273016 TCTATAGCCTAATAAATGAAGTGTTGC 57.727 33.333 0.00 0.00 0.00 4.17
2624 3162 7.880160 ATAGCCTAATAAATGAAGTGTTGCA 57.120 32.000 0.00 0.00 0.00 4.08
2625 3163 6.780457 AGCCTAATAAATGAAGTGTTGCAT 57.220 33.333 0.00 0.00 0.00 3.96
2626 3164 6.567050 AGCCTAATAAATGAAGTGTTGCATG 58.433 36.000 0.00 0.00 0.00 4.06
2627 3165 6.153340 AGCCTAATAAATGAAGTGTTGCATGT 59.847 34.615 0.00 0.00 0.00 3.21
2628 3166 6.813152 GCCTAATAAATGAAGTGTTGCATGTT 59.187 34.615 0.00 0.00 0.00 2.71
2629 3167 7.973388 GCCTAATAAATGAAGTGTTGCATGTTA 59.027 33.333 0.00 0.00 0.00 2.41
2630 3168 9.289303 CCTAATAAATGAAGTGTTGCATGTTAC 57.711 33.333 0.00 0.00 0.00 2.50
2631 3169 9.289303 CTAATAAATGAAGTGTTGCATGTTACC 57.711 33.333 0.00 0.00 0.00 2.85
2632 3170 5.528043 AAATGAAGTGTTGCATGTTACCA 57.472 34.783 0.00 0.00 0.00 3.25
2633 3171 3.980646 TGAAGTGTTGCATGTTACCAC 57.019 42.857 0.00 0.00 0.00 4.16
2634 3172 3.282885 TGAAGTGTTGCATGTTACCACA 58.717 40.909 0.00 0.00 37.31 4.17
2635 3173 3.066064 TGAAGTGTTGCATGTTACCACAC 59.934 43.478 7.36 7.36 35.03 3.82
2636 3174 2.649190 AGTGTTGCATGTTACCACACA 58.351 42.857 15.74 0.00 35.03 3.72
2637 3175 3.221771 AGTGTTGCATGTTACCACACAT 58.778 40.909 15.74 1.51 37.93 3.21
2638 3176 4.393834 AGTGTTGCATGTTACCACACATA 58.606 39.130 15.74 0.00 35.51 2.29
2639 3177 5.009631 AGTGTTGCATGTTACCACACATAT 58.990 37.500 15.74 0.00 35.51 1.78
2640 3178 5.094812 GTGTTGCATGTTACCACACATATG 58.905 41.667 10.02 0.00 35.51 1.78
2641 3179 4.764308 TGTTGCATGTTACCACACATATGT 59.236 37.500 1.41 1.41 40.80 2.29
2642 3180 5.242615 TGTTGCATGTTACCACACATATGTT 59.757 36.000 5.37 0.00 36.72 2.71
2643 3181 6.431234 TGTTGCATGTTACCACACATATGTTA 59.569 34.615 5.37 0.00 36.72 2.41
2644 3182 6.429791 TGCATGTTACCACACATATGTTAC 57.570 37.500 5.37 0.00 36.72 2.50
2645 3183 6.176896 TGCATGTTACCACACATATGTTACT 58.823 36.000 5.37 0.00 36.72 2.24
2646 3184 6.657117 TGCATGTTACCACACATATGTTACTT 59.343 34.615 5.37 0.00 36.72 2.24
2647 3185 7.148323 TGCATGTTACCACACATATGTTACTTC 60.148 37.037 5.37 0.00 36.72 3.01
2648 3186 7.678690 GCATGTTACCACACATATGTTACTTCC 60.679 40.741 5.37 0.00 36.72 3.46
2649 3187 6.174760 TGTTACCACACATATGTTACTTCCC 58.825 40.000 5.37 0.00 36.72 3.97
2650 3188 6.013206 TGTTACCACACATATGTTACTTCCCT 60.013 38.462 5.37 0.00 36.72 4.20
2651 3189 5.099042 ACCACACATATGTTACTTCCCTC 57.901 43.478 5.37 0.00 36.72 4.30
2652 3190 4.534500 ACCACACATATGTTACTTCCCTCA 59.466 41.667 5.37 0.00 36.72 3.86
2653 3191 5.013704 ACCACACATATGTTACTTCCCTCAA 59.986 40.000 5.37 0.00 36.72 3.02
2654 3192 6.122277 CCACACATATGTTACTTCCCTCAAT 58.878 40.000 5.37 0.00 36.72 2.57
2655 3193 7.092623 ACCACACATATGTTACTTCCCTCAATA 60.093 37.037 5.37 0.00 36.72 1.90
2656 3194 7.442364 CCACACATATGTTACTTCCCTCAATAG 59.558 40.741 5.37 0.00 36.72 1.73
2657 3195 8.204160 CACACATATGTTACTTCCCTCAATAGA 58.796 37.037 5.37 0.00 36.72 1.98
2658 3196 8.424918 ACACATATGTTACTTCCCTCAATAGAG 58.575 37.037 5.37 0.00 37.42 2.43
2683 3221 9.352191 AGGTAGTAACATAGACTAGTAACATGG 57.648 37.037 0.00 0.00 30.08 3.66
2684 3222 8.574737 GGTAGTAACATAGACTAGTAACATGGG 58.425 40.741 0.00 0.00 30.08 4.00
2685 3223 7.052142 AGTAACATAGACTAGTAACATGGGC 57.948 40.000 0.00 0.00 0.00 5.36
2686 3224 5.950544 AACATAGACTAGTAACATGGGCA 57.049 39.130 0.00 0.00 0.00 5.36
2687 3225 6.500589 AACATAGACTAGTAACATGGGCAT 57.499 37.500 0.00 0.00 0.00 4.40
2688 3226 5.858381 ACATAGACTAGTAACATGGGCATG 58.142 41.667 0.00 0.00 44.15 4.06
2702 3240 5.858381 CATGGGCATGTTACTAGTCTATGT 58.142 41.667 0.00 0.00 34.23 2.29
2703 3241 5.950544 TGGGCATGTTACTAGTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
2704 3242 7.441836 CATGGGCATGTTACTAGTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
2705 3243 7.612065 TGGGCATGTTACTAGTCTATGTTAT 57.388 36.000 0.00 0.00 0.00 1.89
2706 3244 8.029782 TGGGCATGTTACTAGTCTATGTTATT 57.970 34.615 0.00 0.00 0.00 1.40
2707 3245 9.150028 TGGGCATGTTACTAGTCTATGTTATTA 57.850 33.333 0.00 0.00 0.00 0.98
2708 3246 9.420551 GGGCATGTTACTAGTCTATGTTATTAC 57.579 37.037 0.00 0.00 0.00 1.89
2709 3247 9.976511 GGCATGTTACTAGTCTATGTTATTACA 57.023 33.333 0.00 0.00 38.95 2.41
2730 3268 5.930135 ACACATTATGGCTAGTCTAAAGGG 58.070 41.667 0.00 0.00 0.00 3.95
2731 3269 4.757149 CACATTATGGCTAGTCTAAAGGGC 59.243 45.833 0.00 0.00 0.00 5.19
2732 3270 4.412199 ACATTATGGCTAGTCTAAAGGGCA 59.588 41.667 0.00 0.00 38.52 5.36
2733 3271 4.417426 TTATGGCTAGTCTAAAGGGCAC 57.583 45.455 0.00 0.00 37.09 5.01
2734 3272 1.952621 TGGCTAGTCTAAAGGGCACT 58.047 50.000 0.00 0.00 0.00 4.40
2735 3273 1.555075 TGGCTAGTCTAAAGGGCACTG 59.445 52.381 0.00 0.00 0.00 3.66
2736 3274 1.555533 GGCTAGTCTAAAGGGCACTGT 59.444 52.381 0.00 0.00 0.00 3.55
2737 3275 2.764572 GGCTAGTCTAAAGGGCACTGTA 59.235 50.000 0.00 0.00 0.00 2.74
2738 3276 3.181474 GGCTAGTCTAAAGGGCACTGTAG 60.181 52.174 6.87 6.87 36.09 2.74
2739 3277 3.700038 GCTAGTCTAAAGGGCACTGTAGA 59.300 47.826 12.15 12.15 40.48 2.59
2742 3280 2.897350 TCTAAAGGGCACTGTAGACCA 58.103 47.619 12.15 0.00 38.38 4.02
2743 3281 3.450904 TCTAAAGGGCACTGTAGACCAT 58.549 45.455 12.15 0.00 38.38 3.55
2744 3282 3.844211 TCTAAAGGGCACTGTAGACCATT 59.156 43.478 12.15 0.00 38.38 3.16
2745 3283 3.525800 AAAGGGCACTGTAGACCATTT 57.474 42.857 0.00 3.47 32.94 2.32
2746 3284 3.525800 AAGGGCACTGTAGACCATTTT 57.474 42.857 0.00 0.00 0.00 1.82
2747 3285 3.525800 AGGGCACTGTAGACCATTTTT 57.474 42.857 0.00 0.00 0.00 1.94
2748 3286 4.650972 AGGGCACTGTAGACCATTTTTA 57.349 40.909 0.00 0.00 0.00 1.52
2749 3287 4.332828 AGGGCACTGTAGACCATTTTTAC 58.667 43.478 0.00 0.00 0.00 2.01
2750 3288 4.076394 GGGCACTGTAGACCATTTTTACA 58.924 43.478 0.00 0.00 0.00 2.41
2751 3289 4.156008 GGGCACTGTAGACCATTTTTACAG 59.844 45.833 8.81 8.81 46.06 2.74
2755 3293 5.940192 CTGTAGACCATTTTTACAGTGCA 57.060 39.130 0.00 0.00 39.44 4.57
2756 3294 6.312399 CTGTAGACCATTTTTACAGTGCAA 57.688 37.500 0.00 0.00 39.44 4.08
2757 3295 6.701145 TGTAGACCATTTTTACAGTGCAAA 57.299 33.333 0.00 0.00 0.00 3.68
2758 3296 7.101652 TGTAGACCATTTTTACAGTGCAAAA 57.898 32.000 0.00 0.00 0.00 2.44
2759 3297 7.721402 TGTAGACCATTTTTACAGTGCAAAAT 58.279 30.769 2.12 5.18 33.70 1.82
2760 3298 8.200792 TGTAGACCATTTTTACAGTGCAAAATT 58.799 29.630 9.79 1.69 31.54 1.82
2761 3299 7.481275 AGACCATTTTTACAGTGCAAAATTG 57.519 32.000 13.17 13.17 31.54 2.32
2773 3311 2.907910 CAAAATTGCCTCGGACAGAG 57.092 50.000 0.00 0.00 46.44 3.35
2774 3312 1.135575 CAAAATTGCCTCGGACAGAGC 60.136 52.381 0.00 0.00 45.54 4.09
2775 3313 0.036732 AAATTGCCTCGGACAGAGCA 59.963 50.000 0.00 0.00 45.54 4.26
2776 3314 0.392193 AATTGCCTCGGACAGAGCAG 60.392 55.000 0.00 0.00 45.54 4.24
2777 3315 1.260538 ATTGCCTCGGACAGAGCAGA 61.261 55.000 0.00 0.00 45.54 4.26
2778 3316 1.260538 TTGCCTCGGACAGAGCAGAT 61.261 55.000 0.00 0.00 45.54 2.90
2779 3317 1.067250 GCCTCGGACAGAGCAGATC 59.933 63.158 0.00 0.00 45.54 2.75
2780 3318 1.670949 GCCTCGGACAGAGCAGATCA 61.671 60.000 0.00 0.00 45.54 2.92
2781 3319 1.039068 CCTCGGACAGAGCAGATCAT 58.961 55.000 0.00 0.00 45.54 2.45
2782 3320 1.269673 CCTCGGACAGAGCAGATCATG 60.270 57.143 0.00 0.00 45.54 3.07
2783 3321 1.408340 CTCGGACAGAGCAGATCATGT 59.592 52.381 0.00 0.00 40.54 3.21
2784 3322 2.620585 CTCGGACAGAGCAGATCATGTA 59.379 50.000 0.00 0.00 40.54 2.29
2785 3323 3.023832 TCGGACAGAGCAGATCATGTAA 58.976 45.455 0.00 0.00 0.00 2.41
2786 3324 3.447229 TCGGACAGAGCAGATCATGTAAA 59.553 43.478 0.00 0.00 0.00 2.01
2787 3325 4.100035 TCGGACAGAGCAGATCATGTAAAT 59.900 41.667 0.00 0.00 0.00 1.40
2788 3326 5.301805 TCGGACAGAGCAGATCATGTAAATA 59.698 40.000 0.00 0.00 0.00 1.40
2789 3327 5.985530 CGGACAGAGCAGATCATGTAAATAA 59.014 40.000 0.00 0.00 0.00 1.40
2790 3328 6.479990 CGGACAGAGCAGATCATGTAAATAAA 59.520 38.462 0.00 0.00 0.00 1.40
2791 3329 7.011389 CGGACAGAGCAGATCATGTAAATAAAA 59.989 37.037 0.00 0.00 0.00 1.52
2792 3330 8.125448 GGACAGAGCAGATCATGTAAATAAAAC 58.875 37.037 0.00 0.00 0.00 2.43
2793 3331 8.798859 ACAGAGCAGATCATGTAAATAAAACT 57.201 30.769 0.00 0.00 0.00 2.66
2794 3332 8.671921 ACAGAGCAGATCATGTAAATAAAACTG 58.328 33.333 0.00 0.00 0.00 3.16
2795 3333 8.671921 CAGAGCAGATCATGTAAATAAAACTGT 58.328 33.333 0.00 0.00 0.00 3.55
2796 3334 9.890629 AGAGCAGATCATGTAAATAAAACTGTA 57.109 29.630 0.00 0.00 0.00 2.74
2799 3337 9.884465 GCAGATCATGTAAATAAAACTGTATCC 57.116 33.333 0.00 0.00 0.00 2.59
2808 3346 9.946165 GTAAATAAAACTGTATCCCAATGTAGC 57.054 33.333 0.00 0.00 0.00 3.58
2809 3347 8.823220 AAATAAAACTGTATCCCAATGTAGCT 57.177 30.769 0.00 0.00 0.00 3.32
2810 3348 8.451908 AATAAAACTGTATCCCAATGTAGCTC 57.548 34.615 0.00 0.00 0.00 4.09
2811 3349 5.435686 AAACTGTATCCCAATGTAGCTCA 57.564 39.130 0.00 0.00 0.00 4.26
2812 3350 5.636903 AACTGTATCCCAATGTAGCTCAT 57.363 39.130 0.00 0.00 38.57 2.90
2813 3351 5.636903 ACTGTATCCCAATGTAGCTCATT 57.363 39.130 0.00 0.00 46.32 2.57
2814 3352 6.006275 ACTGTATCCCAATGTAGCTCATTT 57.994 37.500 8.19 0.00 43.33 2.32
2815 3353 6.426587 ACTGTATCCCAATGTAGCTCATTTT 58.573 36.000 8.19 0.19 43.33 1.82
2816 3354 6.891908 ACTGTATCCCAATGTAGCTCATTTTT 59.108 34.615 8.19 0.00 43.33 1.94
2837 3375 4.968971 TTATTTCCGTATTCCTCCCTCC 57.031 45.455 0.00 0.00 0.00 4.30
2838 3376 1.503800 TTTCCGTATTCCTCCCTCCC 58.496 55.000 0.00 0.00 0.00 4.30
2839 3377 0.757935 TTCCGTATTCCTCCCTCCCG 60.758 60.000 0.00 0.00 0.00 5.14
2840 3378 2.207924 CCGTATTCCTCCCTCCCGG 61.208 68.421 0.00 0.00 0.00 5.73
2841 3379 2.868986 CGTATTCCTCCCTCCCGGC 61.869 68.421 0.00 0.00 0.00 6.13
2842 3380 1.764854 GTATTCCTCCCTCCCGGCA 60.765 63.158 0.00 0.00 0.00 5.69
2843 3381 1.459539 TATTCCTCCCTCCCGGCAG 60.460 63.158 0.00 0.00 0.00 4.85
2844 3382 1.956639 TATTCCTCCCTCCCGGCAGA 61.957 60.000 0.00 0.00 0.00 4.26
2845 3383 2.628187 ATTCCTCCCTCCCGGCAGAT 62.628 60.000 0.00 0.00 0.00 2.90
2846 3384 3.237741 CCTCCCTCCCGGCAGATC 61.238 72.222 0.00 0.00 0.00 2.75
2847 3385 3.237741 CTCCCTCCCGGCAGATCC 61.238 72.222 0.00 0.00 0.00 3.36
2848 3386 4.880426 TCCCTCCCGGCAGATCCC 62.880 72.222 0.00 0.00 0.00 3.85
2850 3388 2.851102 CCTCCCGGCAGATCCCAT 60.851 66.667 0.00 0.00 0.00 4.00
2851 3389 2.746359 CTCCCGGCAGATCCCATC 59.254 66.667 0.00 0.00 0.00 3.51
2852 3390 1.840650 CTCCCGGCAGATCCCATCT 60.841 63.158 0.00 0.00 41.15 2.90
2853 3391 1.825281 CTCCCGGCAGATCCCATCTC 61.825 65.000 0.00 0.00 37.58 2.75
2854 3392 2.746359 CCGGCAGATCCCATCTCC 59.254 66.667 0.00 0.00 37.58 3.71
2855 3393 2.341543 CGGCAGATCCCATCTCCG 59.658 66.667 8.84 8.84 40.72 4.63
2856 3394 2.746359 GGCAGATCCCATCTCCGG 59.254 66.667 0.00 0.00 37.58 5.14
2857 3395 2.031768 GCAGATCCCATCTCCGGC 59.968 66.667 0.00 0.00 37.58 6.13
2858 3396 2.746359 CAGATCCCATCTCCGGCC 59.254 66.667 0.00 0.00 37.58 6.13
2859 3397 2.142761 CAGATCCCATCTCCGGCCA 61.143 63.158 2.24 0.00 37.58 5.36
2860 3398 2.143419 AGATCCCATCTCCGGCCAC 61.143 63.158 2.24 0.00 33.42 5.01
2861 3399 3.521529 GATCCCATCTCCGGCCACG 62.522 68.421 2.24 0.00 40.55 4.94
2929 3467 4.332637 CTGCCTTGCACCGCACAC 62.333 66.667 2.77 0.00 38.71 3.82
2944 3482 3.953775 CACCCCCTGACGTGCCTT 61.954 66.667 0.00 0.00 0.00 4.35
2945 3483 3.637273 ACCCCCTGACGTGCCTTC 61.637 66.667 0.00 0.00 0.00 3.46
2946 3484 4.410400 CCCCCTGACGTGCCTTCC 62.410 72.222 0.00 0.00 0.00 3.46
2947 3485 4.410400 CCCCTGACGTGCCTTCCC 62.410 72.222 0.00 0.00 0.00 3.97
2948 3486 4.760047 CCCTGACGTGCCTTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
2949 3487 4.003788 CCTGACGTGCCTTCCCGT 62.004 66.667 0.00 0.00 40.54 5.28
2952 3490 4.754667 GACGTGCCTTCCCGTCCC 62.755 72.222 0.00 0.00 45.74 4.46
2957 3495 3.793888 GCCTTCCCGTCCCCGATT 61.794 66.667 0.00 0.00 35.63 3.34
2958 3496 2.995547 CCTTCCCGTCCCCGATTT 59.004 61.111 0.00 0.00 35.63 2.17
2959 3497 1.974973 GCCTTCCCGTCCCCGATTTA 61.975 60.000 0.00 0.00 35.63 1.40
2960 3498 0.106149 CCTTCCCGTCCCCGATTTAG 59.894 60.000 0.00 0.00 35.63 1.85
2961 3499 0.532196 CTTCCCGTCCCCGATTTAGC 60.532 60.000 0.00 0.00 35.63 3.09
2962 3500 1.974973 TTCCCGTCCCCGATTTAGCC 61.975 60.000 0.00 0.00 35.63 3.93
2963 3501 2.110420 CCGTCCCCGATTTAGCCC 59.890 66.667 0.00 0.00 35.63 5.19
2964 3502 2.279918 CGTCCCCGATTTAGCCCG 60.280 66.667 0.00 0.00 35.63 6.13
2965 3503 2.110420 GTCCCCGATTTAGCCCGG 59.890 66.667 0.00 0.00 44.94 5.73
2966 3504 3.868985 TCCCCGATTTAGCCCGGC 61.869 66.667 0.00 0.00 44.07 6.13
2967 3505 4.183858 CCCCGATTTAGCCCGGCA 62.184 66.667 13.15 0.00 44.07 5.69
2968 3506 2.900337 CCCGATTTAGCCCGGCAC 60.900 66.667 13.15 0.00 44.07 5.01
2969 3507 2.900337 CCGATTTAGCCCGGCACC 60.900 66.667 13.15 0.00 39.22 5.01
2970 3508 3.269347 CGATTTAGCCCGGCACCG 61.269 66.667 13.15 1.02 39.44 4.94
2971 3509 3.583086 GATTTAGCCCGGCACCGC 61.583 66.667 13.15 0.00 38.24 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
77 78 3.433598 CCAGGATGATGTGTCCGGTAAAT 60.434 47.826 0.00 0.00 39.69 1.40
83 84 0.826715 ACTCCAGGATGATGTGTCCG 59.173 55.000 0.00 0.00 39.69 4.79
131 132 7.684937 AAATTTAGGCATAGAGATCATGAGC 57.315 36.000 1.78 1.78 0.00 4.26
164 324 4.936891 GGAAAATATCCTCACAATGCCAC 58.063 43.478 0.00 0.00 45.56 5.01
188 348 4.389374 AGCTTAATGGATATTGGTCACCG 58.611 43.478 0.00 0.00 0.00 4.94
214 374 6.955364 TCTCCATGTTCTCAATCAAATCTCT 58.045 36.000 0.00 0.00 0.00 3.10
320 480 1.299541 CACACGGTCAACTCTTTGCT 58.700 50.000 0.00 0.00 32.17 3.91
345 563 2.836020 AGTTGTCTCCCCGTCAACT 58.164 52.632 4.31 4.31 44.24 3.16
377 595 5.032220 CGTCATTCATCATCATTGTTGGTG 58.968 41.667 2.15 2.15 35.12 4.17
384 602 4.968812 TTGCACGTCATTCATCATCATT 57.031 36.364 0.00 0.00 0.00 2.57
399 617 4.087930 GTCACGGAACAATAAATTTGCACG 59.912 41.667 0.00 0.00 0.00 5.34
408 626 2.210961 TGCGTTGTCACGGAACAATAA 58.789 42.857 7.93 0.00 44.68 1.40
421 639 1.959226 CTTAGTGCCCGTGCGTTGT 60.959 57.895 0.00 0.00 41.78 3.32
435 653 6.978659 TGATGTTTTACGGATGACTAGCTTAG 59.021 38.462 0.00 0.00 0.00 2.18
439 657 4.868171 TGTGATGTTTTACGGATGACTAGC 59.132 41.667 0.00 0.00 0.00 3.42
445 663 5.862924 AAGAGTGTGATGTTTTACGGATG 57.137 39.130 0.00 0.00 0.00 3.51
446 664 6.877611 AAAAGAGTGTGATGTTTTACGGAT 57.122 33.333 0.00 0.00 0.00 4.18
447 665 6.687081 AAAAAGAGTGTGATGTTTTACGGA 57.313 33.333 0.00 0.00 0.00 4.69
507 725 4.891168 TGCACGTCTAGGAATATAAGACCA 59.109 41.667 0.00 0.00 37.02 4.02
514 732 4.022762 CAGTAGCTGCACGTCTAGGAATAT 60.023 45.833 4.12 0.00 0.00 1.28
516 734 2.099921 CAGTAGCTGCACGTCTAGGAAT 59.900 50.000 4.12 0.00 0.00 3.01
520 738 2.678836 ACTACAGTAGCTGCACGTCTAG 59.321 50.000 7.57 0.00 34.37 2.43
524 742 2.419324 GAGTACTACAGTAGCTGCACGT 59.581 50.000 7.57 3.28 34.37 4.49
526 744 2.099427 GGGAGTACTACAGTAGCTGCAC 59.901 54.545 7.57 1.42 34.37 4.57
527 745 2.025226 AGGGAGTACTACAGTAGCTGCA 60.025 50.000 7.57 0.00 34.37 4.41
531 749 4.426736 AGAGAGGGAGTACTACAGTAGC 57.573 50.000 7.57 0.00 0.00 3.58
561 779 9.557338 GTCGCACTCGTATATAAAAGATCTTAT 57.443 33.333 8.75 2.01 36.96 1.73
562 780 8.781196 AGTCGCACTCGTATATAAAAGATCTTA 58.219 33.333 8.75 0.00 36.96 2.10
564 782 7.204496 AGTCGCACTCGTATATAAAAGATCT 57.796 36.000 0.00 0.00 36.96 2.75
565 783 8.441608 TCTAGTCGCACTCGTATATAAAAGATC 58.558 37.037 0.00 0.00 36.96 2.75
566 784 8.320396 TCTAGTCGCACTCGTATATAAAAGAT 57.680 34.615 0.00 0.00 36.96 2.40
567 785 7.719778 TCTAGTCGCACTCGTATATAAAAGA 57.280 36.000 0.00 0.00 36.96 2.52
568 786 8.951954 AATCTAGTCGCACTCGTATATAAAAG 57.048 34.615 0.00 0.00 36.96 2.27
593 811 7.425606 ACTCGGTTAAGTTTTAGTCGACTAAA 58.574 34.615 35.56 35.56 44.15 1.85
595 813 6.428159 AGACTCGGTTAAGTTTTAGTCGACTA 59.572 38.462 21.25 21.25 38.65 2.59
596 814 5.240403 AGACTCGGTTAAGTTTTAGTCGACT 59.760 40.000 23.66 23.66 38.65 4.18
599 817 5.455392 TGAGACTCGGTTAAGTTTTAGTCG 58.545 41.667 0.00 0.00 38.65 4.18
600 818 7.886405 ATTGAGACTCGGTTAAGTTTTAGTC 57.114 36.000 0.00 0.00 34.85 2.59
606 824 8.718734 GTCATTTAATTGAGACTCGGTTAAGTT 58.281 33.333 0.32 0.00 0.00 2.66
613 831 6.368791 TGTCTTGTCATTTAATTGAGACTCGG 59.631 38.462 14.32 2.31 32.41 4.63
671 889 9.935682 GAAATCTTATATGAAGATTCGTGCAAA 57.064 29.630 14.44 0.00 43.87 3.68
672 890 9.108284 TGAAATCTTATATGAAGATTCGTGCAA 57.892 29.630 14.44 0.00 43.87 4.08
673 891 8.661352 TGAAATCTTATATGAAGATTCGTGCA 57.339 30.769 14.44 9.72 43.87 4.57
674 892 9.539139 CATGAAATCTTATATGAAGATTCGTGC 57.461 33.333 14.44 8.06 43.87 5.34
729 947 9.176181 GACTATTAAATCTGAGTCGATTGAGAC 57.824 37.037 0.00 0.00 41.23 3.36
813 1052 9.420551 CACTTATTTAAGAACGGAGAAAGTAGT 57.579 33.333 4.40 0.00 37.08 2.73
814 1053 9.420551 ACACTTATTTAAGAACGGAGAAAGTAG 57.579 33.333 4.40 0.00 37.08 2.57
815 1054 9.415544 GACACTTATTTAAGAACGGAGAAAGTA 57.584 33.333 4.40 0.00 37.08 2.24
816 1055 8.148999 AGACACTTATTTAAGAACGGAGAAAGT 58.851 33.333 4.40 0.00 37.08 2.66
817 1056 8.535690 AGACACTTATTTAAGAACGGAGAAAG 57.464 34.615 4.40 0.00 37.08 2.62
818 1057 8.145767 TGAGACACTTATTTAAGAACGGAGAAA 58.854 33.333 4.40 0.00 37.08 2.52
819 1058 7.663827 TGAGACACTTATTTAAGAACGGAGAA 58.336 34.615 4.40 0.00 37.08 2.87
820 1059 7.223260 TGAGACACTTATTTAAGAACGGAGA 57.777 36.000 4.40 0.00 37.08 3.71
821 1060 7.884816 TTGAGACACTTATTTAAGAACGGAG 57.115 36.000 4.40 0.00 37.08 4.63
822 1061 8.311836 AGATTGAGACACTTATTTAAGAACGGA 58.688 33.333 4.40 0.00 37.08 4.69
823 1062 8.480643 AGATTGAGACACTTATTTAAGAACGG 57.519 34.615 4.40 0.00 37.08 4.44
875 1114 9.472361 GAAGTATCAAAGGAGCGTTTATATACA 57.528 33.333 15.22 0.00 0.00 2.29
876 1115 8.923683 GGAAGTATCAAAGGAGCGTTTATATAC 58.076 37.037 0.00 0.00 0.00 1.47
877 1116 8.644216 TGGAAGTATCAAAGGAGCGTTTATATA 58.356 33.333 0.00 0.00 0.00 0.86
880 1119 5.585047 GTGGAAGTATCAAAGGAGCGTTTAT 59.415 40.000 0.00 0.00 0.00 1.40
890 1129 3.820467 TGGCAACTGTGGAAGTATCAAAG 59.180 43.478 0.00 0.00 38.56 2.77
894 1133 4.072131 TCTTTGGCAACTGTGGAAGTATC 58.928 43.478 0.00 0.00 38.56 2.24
895 1134 4.098914 TCTTTGGCAACTGTGGAAGTAT 57.901 40.909 0.00 0.00 38.56 2.12
896 1135 3.569194 TCTTTGGCAACTGTGGAAGTA 57.431 42.857 0.00 0.00 38.56 2.24
897 1136 2.435372 TCTTTGGCAACTGTGGAAGT 57.565 45.000 0.00 0.00 42.60 3.01
898 1137 3.799281 TTTCTTTGGCAACTGTGGAAG 57.201 42.857 0.00 0.00 37.61 3.46
900 1139 2.430332 CCTTTTCTTTGGCAACTGTGGA 59.570 45.455 0.00 0.00 37.61 4.02
949 1189 1.765314 ACTGCTGGACTGTTTCTCTGT 59.235 47.619 0.00 0.00 0.00 3.41
963 1203 2.125753 GACGGAGGAGCACTGCTG 60.126 66.667 8.69 0.00 39.88 4.41
1215 1459 1.467543 GCTGTGATCACGAACGCTAGA 60.468 52.381 20.54 0.00 0.00 2.43
1218 1462 1.738099 GGCTGTGATCACGAACGCT 60.738 57.895 20.54 0.00 0.00 5.07
1334 1578 4.760047 ACACGGCGAGCATGGACC 62.760 66.667 16.62 0.00 0.00 4.46
1335 1579 3.490759 CACACGGCGAGCATGGAC 61.491 66.667 16.62 0.00 0.00 4.02
1336 1580 4.758251 CCACACGGCGAGCATGGA 62.758 66.667 16.62 0.00 31.57 3.41
1346 1590 4.742201 CCGAGACTGCCCACACGG 62.742 72.222 0.00 0.00 34.77 4.94
1347 1591 3.991051 ACCGAGACTGCCCACACG 61.991 66.667 0.00 0.00 0.00 4.49
1348 1592 2.357517 CACCGAGACTGCCCACAC 60.358 66.667 0.00 0.00 0.00 3.82
1349 1593 4.314440 GCACCGAGACTGCCCACA 62.314 66.667 0.00 0.00 0.00 4.17
1350 1594 4.008933 AGCACCGAGACTGCCCAC 62.009 66.667 0.00 0.00 35.01 4.61
1351 1595 4.007644 CAGCACCGAGACTGCCCA 62.008 66.667 0.00 0.00 35.01 5.36
1352 1596 3.537206 AACAGCACCGAGACTGCCC 62.537 63.158 0.00 0.00 37.42 5.36
1353 1597 2.029844 GAACAGCACCGAGACTGCC 61.030 63.158 0.00 0.00 37.42 4.85
1354 1598 2.029844 GGAACAGCACCGAGACTGC 61.030 63.158 0.00 0.00 37.42 4.40
1355 1599 0.389166 GAGGAACAGCACCGAGACTG 60.389 60.000 0.00 0.00 39.86 3.51
1356 1600 1.867919 CGAGGAACAGCACCGAGACT 61.868 60.000 0.00 0.00 0.00 3.24
1357 1601 1.444553 CGAGGAACAGCACCGAGAC 60.445 63.158 0.00 0.00 0.00 3.36
1358 1602 2.962569 CGAGGAACAGCACCGAGA 59.037 61.111 0.00 0.00 0.00 4.04
1359 1603 1.934220 TAGCGAGGAACAGCACCGAG 61.934 60.000 0.00 0.00 35.48 4.63
1360 1604 1.974875 TAGCGAGGAACAGCACCGA 60.975 57.895 0.00 0.00 35.48 4.69
1361 1605 1.805945 GTAGCGAGGAACAGCACCG 60.806 63.158 0.00 0.00 35.48 4.94
1362 1606 1.448013 GGTAGCGAGGAACAGCACC 60.448 63.158 0.00 0.00 35.48 5.01
1363 1607 0.737715 CAGGTAGCGAGGAACAGCAC 60.738 60.000 0.00 0.00 35.48 4.40
1364 1608 1.591703 CAGGTAGCGAGGAACAGCA 59.408 57.895 0.00 0.00 35.48 4.41
1365 1609 1.811679 GCAGGTAGCGAGGAACAGC 60.812 63.158 0.00 0.00 0.00 4.40
1366 1610 4.504132 GCAGGTAGCGAGGAACAG 57.496 61.111 0.00 0.00 0.00 3.16
1459 1703 4.756458 AGAGCAGCAGAGCACGGC 62.756 66.667 0.00 0.00 36.85 5.68
1460 1704 2.814341 CAGAGCAGCAGAGCACGG 60.814 66.667 0.00 0.00 36.85 4.94
1461 1705 2.048409 ACAGAGCAGCAGAGCACG 60.048 61.111 0.00 0.00 36.85 5.34
1462 1706 1.015085 CAGACAGAGCAGCAGAGCAC 61.015 60.000 0.00 0.00 36.85 4.40
1463 1707 1.292541 CAGACAGAGCAGCAGAGCA 59.707 57.895 0.00 0.00 36.85 4.26
1464 1708 1.448189 CCAGACAGAGCAGCAGAGC 60.448 63.158 0.00 0.00 0.00 4.09
1465 1709 0.607112 TTCCAGACAGAGCAGCAGAG 59.393 55.000 0.00 0.00 0.00 3.35
1466 1710 0.607112 CTTCCAGACAGAGCAGCAGA 59.393 55.000 0.00 0.00 0.00 4.26
1467 1711 1.020333 GCTTCCAGACAGAGCAGCAG 61.020 60.000 0.00 0.00 36.45 4.24
1468 1712 1.004080 GCTTCCAGACAGAGCAGCA 60.004 57.895 0.00 0.00 36.45 4.41
1469 1713 0.740516 GAGCTTCCAGACAGAGCAGC 60.741 60.000 0.00 0.00 38.85 5.25
1470 1714 0.108233 GGAGCTTCCAGACAGAGCAG 60.108 60.000 0.00 0.00 38.85 4.24
1471 1715 0.833409 TGGAGCTTCCAGACAGAGCA 60.833 55.000 1.25 0.00 42.67 4.26
1472 1716 1.978473 TGGAGCTTCCAGACAGAGC 59.022 57.895 1.25 0.00 42.67 4.09
1486 1730 4.527583 GAGCCGCTGGAGCTGGAG 62.528 72.222 0.00 0.00 41.75 3.86
1492 1736 4.838486 GTCGTCGAGCCGCTGGAG 62.838 72.222 5.19 1.03 0.00 3.86
1671 2119 0.179936 GCTTCCTGAGGCAGCAGTAT 59.820 55.000 18.29 0.00 34.06 2.12
1892 2340 1.383943 TACTCCCCATCCATGCGGT 60.384 57.895 0.00 0.00 0.00 5.68
1899 2347 3.925090 CGCCCGTACTCCCCATCC 61.925 72.222 0.00 0.00 0.00 3.51
1942 2390 2.747855 GTGCAAAGGCCTCTCCGG 60.748 66.667 5.23 0.00 40.77 5.14
1974 2422 2.369860 CACATTATGCTAGGCCCTCTGA 59.630 50.000 0.00 0.00 0.00 3.27
1988 2442 4.142609 ACGAGCACTCATTCCACATTAT 57.857 40.909 0.00 0.00 0.00 1.28
1989 2443 3.610040 ACGAGCACTCATTCCACATTA 57.390 42.857 0.00 0.00 0.00 1.90
1990 2444 2.479566 ACGAGCACTCATTCCACATT 57.520 45.000 0.00 0.00 0.00 2.71
2032 2486 4.305001 CGAATACGTACGGTCTAGCTAG 57.695 50.000 21.06 15.01 34.56 3.42
2090 2611 3.003689 ACTTTGAGTCTCCATTTTGCACG 59.996 43.478 0.00 0.00 0.00 5.34
2194 2727 7.603784 GCCAGACCATGAAATAACAAGAAAATT 59.396 33.333 0.00 0.00 0.00 1.82
2206 2740 5.750352 AAAATTCAGCCAGACCATGAAAT 57.250 34.783 0.00 0.00 36.59 2.17
2216 2750 4.919754 GCTCACAAGTAAAAATTCAGCCAG 59.080 41.667 0.00 0.00 0.00 4.85
2218 2752 3.914364 CGCTCACAAGTAAAAATTCAGCC 59.086 43.478 0.00 0.00 0.00 4.85
2219 2753 3.914364 CCGCTCACAAGTAAAAATTCAGC 59.086 43.478 0.00 0.00 0.00 4.26
2235 2772 1.488812 AGGTAATACCAATGCCGCTCA 59.511 47.619 12.54 0.00 41.95 4.26
2236 2773 2.143925 GAGGTAATACCAATGCCGCTC 58.856 52.381 12.54 0.00 41.95 5.03
2262 2799 3.466836 GCTAGGTGCATGTGCTAATGTA 58.533 45.455 6.55 0.00 42.66 2.29
2289 2827 2.076100 TCGTGAGCTTAAATGGTGCAG 58.924 47.619 0.00 0.00 0.00 4.41
2290 2828 1.804151 GTCGTGAGCTTAAATGGTGCA 59.196 47.619 0.00 0.00 0.00 4.57
2291 2829 1.201921 CGTCGTGAGCTTAAATGGTGC 60.202 52.381 0.00 0.00 0.00 5.01
2292 2830 2.092211 GTCGTCGTGAGCTTAAATGGTG 59.908 50.000 0.00 0.00 0.00 4.17
2293 2831 2.029290 AGTCGTCGTGAGCTTAAATGGT 60.029 45.455 0.00 0.00 0.00 3.55
2294 2832 2.607187 AGTCGTCGTGAGCTTAAATGG 58.393 47.619 0.00 0.00 0.00 3.16
2295 2833 4.386230 CAAAGTCGTCGTGAGCTTAAATG 58.614 43.478 0.00 0.00 0.00 2.32
2296 2834 3.120649 GCAAAGTCGTCGTGAGCTTAAAT 60.121 43.478 0.00 0.00 0.00 1.40
2297 2835 2.220133 GCAAAGTCGTCGTGAGCTTAAA 59.780 45.455 0.00 0.00 0.00 1.52
2298 2836 1.790623 GCAAAGTCGTCGTGAGCTTAA 59.209 47.619 0.00 0.00 0.00 1.85
2299 2837 1.415374 GCAAAGTCGTCGTGAGCTTA 58.585 50.000 0.00 0.00 0.00 3.09
2300 2838 1.222115 GGCAAAGTCGTCGTGAGCTT 61.222 55.000 0.00 0.00 0.00 3.74
2301 2839 1.664965 GGCAAAGTCGTCGTGAGCT 60.665 57.895 0.00 0.00 0.00 4.09
2302 2840 2.668280 GGGCAAAGTCGTCGTGAGC 61.668 63.158 0.00 0.00 0.00 4.26
2303 2841 2.372690 CGGGCAAAGTCGTCGTGAG 61.373 63.158 0.00 0.00 0.00 3.51
2304 2842 2.355363 CGGGCAAAGTCGTCGTGA 60.355 61.111 0.00 0.00 0.00 4.35
2305 2843 3.411351 CCGGGCAAAGTCGTCGTG 61.411 66.667 0.00 0.00 0.00 4.35
2312 2850 4.344865 ATGGACGCCGGGCAAAGT 62.345 61.111 20.71 8.93 0.00 2.66
2313 2851 3.814268 CATGGACGCCGGGCAAAG 61.814 66.667 20.71 5.25 0.00 2.77
2322 2860 4.408821 TGTGGGCTCCATGGACGC 62.409 66.667 21.31 21.31 35.28 5.19
2323 2861 2.124983 CTGTGGGCTCCATGGACG 60.125 66.667 11.44 8.57 35.28 4.79
2324 2862 1.222936 CTCTGTGGGCTCCATGGAC 59.777 63.158 11.44 8.06 35.28 4.02
2325 2863 1.080907 TCTCTGTGGGCTCCATGGA 59.919 57.895 15.27 15.27 35.28 3.41
2326 2864 1.222936 GTCTCTGTGGGCTCCATGG 59.777 63.158 4.97 4.97 35.28 3.66
2327 2865 1.222936 GGTCTCTGTGGGCTCCATG 59.777 63.158 0.00 0.00 35.28 3.66
2328 2866 0.980231 GAGGTCTCTGTGGGCTCCAT 60.980 60.000 0.00 0.00 35.28 3.41
2329 2867 1.610673 GAGGTCTCTGTGGGCTCCA 60.611 63.158 0.00 0.00 0.00 3.86
2330 2868 0.907230 AAGAGGTCTCTGTGGGCTCC 60.907 60.000 0.77 0.00 40.36 4.70
2331 2869 0.980423 AAAGAGGTCTCTGTGGGCTC 59.020 55.000 0.77 0.00 40.36 4.70
2332 2870 0.980423 GAAAGAGGTCTCTGTGGGCT 59.020 55.000 0.77 0.00 40.36 5.19
2333 2871 0.035915 GGAAAGAGGTCTCTGTGGGC 60.036 60.000 0.77 0.00 40.36 5.36
2334 2872 1.277557 CAGGAAAGAGGTCTCTGTGGG 59.722 57.143 0.77 0.00 40.36 4.61
2335 2873 1.277557 CCAGGAAAGAGGTCTCTGTGG 59.722 57.143 0.77 3.55 40.36 4.17
2336 2874 1.974236 ACCAGGAAAGAGGTCTCTGTG 59.026 52.381 0.77 0.00 40.36 3.66
2337 2875 2.407340 ACCAGGAAAGAGGTCTCTGT 57.593 50.000 0.77 0.00 40.36 3.41
2343 2881 1.841556 TGGCGACCAGGAAAGAGGT 60.842 57.895 0.00 0.00 41.83 3.85
2344 2882 1.376037 GTGGCGACCAGGAAAGAGG 60.376 63.158 0.00 0.00 32.34 3.69
2345 2883 1.738099 CGTGGCGACCAGGAAAGAG 60.738 63.158 11.55 0.00 41.36 2.85
2346 2884 2.342279 CGTGGCGACCAGGAAAGA 59.658 61.111 11.55 0.00 41.36 2.52
2347 2885 2.742372 CCGTGGCGACCAGGAAAG 60.742 66.667 16.67 1.25 41.36 2.62
2358 2896 4.545706 TGATCCCGATGCCGTGGC 62.546 66.667 3.30 3.30 42.35 5.01
2359 2897 1.227943 ATTGATCCCGATGCCGTGG 60.228 57.895 0.00 0.00 0.00 4.94
2360 2898 0.250038 AGATTGATCCCGATGCCGTG 60.250 55.000 0.00 0.00 0.00 4.94
2361 2899 0.034059 GAGATTGATCCCGATGCCGT 59.966 55.000 0.00 0.00 0.00 5.68
2362 2900 0.033920 TGAGATTGATCCCGATGCCG 59.966 55.000 0.00 0.00 0.00 5.69
2363 2901 1.071385 ACTGAGATTGATCCCGATGCC 59.929 52.381 0.00 0.00 0.00 4.40
2364 2902 2.411904 GACTGAGATTGATCCCGATGC 58.588 52.381 0.00 0.00 0.00 3.91
2365 2903 2.608998 CGGACTGAGATTGATCCCGATG 60.609 54.545 0.00 0.00 37.87 3.84
2366 2904 1.615883 CGGACTGAGATTGATCCCGAT 59.384 52.381 0.00 0.00 37.87 4.18
2367 2905 1.032794 CGGACTGAGATTGATCCCGA 58.967 55.000 0.00 0.00 37.87 5.14
2368 2906 0.747255 ACGGACTGAGATTGATCCCG 59.253 55.000 0.00 0.00 41.04 5.14
2369 2907 3.637229 TCTTACGGACTGAGATTGATCCC 59.363 47.826 0.00 0.00 0.00 3.85
2370 2908 4.794655 GCTCTTACGGACTGAGATTGATCC 60.795 50.000 1.32 0.00 0.00 3.36
2371 2909 4.202060 TGCTCTTACGGACTGAGATTGATC 60.202 45.833 1.32 0.00 0.00 2.92
2372 2910 3.701542 TGCTCTTACGGACTGAGATTGAT 59.298 43.478 1.32 0.00 0.00 2.57
2373 2911 3.089284 TGCTCTTACGGACTGAGATTGA 58.911 45.455 1.32 0.00 0.00 2.57
2374 2912 3.510388 TGCTCTTACGGACTGAGATTG 57.490 47.619 1.32 0.00 0.00 2.67
2375 2913 3.957497 AGATGCTCTTACGGACTGAGATT 59.043 43.478 1.32 0.00 0.00 2.40
2376 2914 3.561143 AGATGCTCTTACGGACTGAGAT 58.439 45.455 1.32 0.00 0.00 2.75
2377 2915 3.006112 AGATGCTCTTACGGACTGAGA 57.994 47.619 1.32 0.00 0.00 3.27
2378 2916 5.391523 GCTATAGATGCTCTTACGGACTGAG 60.392 48.000 3.21 0.00 0.00 3.35
2379 2917 4.456222 GCTATAGATGCTCTTACGGACTGA 59.544 45.833 3.21 0.00 0.00 3.41
2380 2918 4.216472 TGCTATAGATGCTCTTACGGACTG 59.784 45.833 3.21 0.00 0.00 3.51
2381 2919 4.399219 TGCTATAGATGCTCTTACGGACT 58.601 43.478 3.21 0.00 0.00 3.85
2382 2920 4.456222 TCTGCTATAGATGCTCTTACGGAC 59.544 45.833 3.21 0.00 0.00 4.79
2383 2921 4.652822 TCTGCTATAGATGCTCTTACGGA 58.347 43.478 3.21 0.00 0.00 4.69
2384 2922 5.356751 AGATCTGCTATAGATGCTCTTACGG 59.643 44.000 3.21 0.00 46.12 4.02
2385 2923 6.435430 AGATCTGCTATAGATGCTCTTACG 57.565 41.667 3.21 0.00 46.12 3.18
2391 2929 9.844257 ACTTTTAAAAGATCTGCTATAGATGCT 57.156 29.630 29.97 2.94 46.12 3.79
2398 2936 9.755122 AAGGGTAACTTTTAAAAGATCTGCTAT 57.245 29.630 29.97 6.32 39.31 2.97
2400 2938 9.582648 TTAAGGGTAACTTTTAAAAGATCTGCT 57.417 29.630 29.97 13.19 40.64 4.24
2420 2958 9.557061 GGGTAGTCTTATACTCATTTTTAAGGG 57.443 37.037 0.00 0.00 39.80 3.95
2503 3041 9.171877 CCTCTCTTTCTTCATTTATTGCTTACT 57.828 33.333 0.00 0.00 0.00 2.24
2504 3042 9.167311 TCCTCTCTTTCTTCATTTATTGCTTAC 57.833 33.333 0.00 0.00 0.00 2.34
2505 3043 9.739276 TTCCTCTCTTTCTTCATTTATTGCTTA 57.261 29.630 0.00 0.00 0.00 3.09
2506 3044 8.641498 TTCCTCTCTTTCTTCATTTATTGCTT 57.359 30.769 0.00 0.00 0.00 3.91
2507 3045 8.641498 TTTCCTCTCTTTCTTCATTTATTGCT 57.359 30.769 0.00 0.00 0.00 3.91
2508 3046 8.518702 ACTTTCCTCTCTTTCTTCATTTATTGC 58.481 33.333 0.00 0.00 0.00 3.56
2514 3052 9.713713 GTTACTACTTTCCTCTCTTTCTTCATT 57.286 33.333 0.00 0.00 0.00 2.57
2515 3053 8.871125 TGTTACTACTTTCCTCTCTTTCTTCAT 58.129 33.333 0.00 0.00 0.00 2.57
2516 3054 8.246430 TGTTACTACTTTCCTCTCTTTCTTCA 57.754 34.615 0.00 0.00 0.00 3.02
2519 3057 8.471609 GCTATGTTACTACTTTCCTCTCTTTCT 58.528 37.037 0.00 0.00 0.00 2.52
2520 3058 8.471609 AGCTATGTTACTACTTTCCTCTCTTTC 58.528 37.037 0.00 0.00 0.00 2.62
2521 3059 8.368962 AGCTATGTTACTACTTTCCTCTCTTT 57.631 34.615 0.00 0.00 0.00 2.52
2522 3060 7.964666 AGCTATGTTACTACTTTCCTCTCTT 57.035 36.000 0.00 0.00 0.00 2.85
2523 3061 8.276477 AGTAGCTATGTTACTACTTTCCTCTCT 58.724 37.037 0.00 0.00 45.25 3.10
2524 3062 8.454570 AGTAGCTATGTTACTACTTTCCTCTC 57.545 38.462 0.00 0.00 45.25 3.20
2525 3063 9.563748 CTAGTAGCTATGTTACTACTTTCCTCT 57.436 37.037 7.89 0.00 45.25 3.69
2526 3064 9.341078 ACTAGTAGCTATGTTACTACTTTCCTC 57.659 37.037 7.89 0.00 45.25 3.71
2527 3065 9.697990 AACTAGTAGCTATGTTACTACTTTCCT 57.302 33.333 7.89 0.00 45.25 3.36
2580 3118 9.368416 AGGCTATAGACACATCTTAACTTGATA 57.632 33.333 8.68 0.00 36.29 2.15
2581 3119 8.256356 AGGCTATAGACACATCTTAACTTGAT 57.744 34.615 8.68 0.00 36.29 2.57
2582 3120 7.661536 AGGCTATAGACACATCTTAACTTGA 57.338 36.000 8.68 0.00 36.29 3.02
2583 3121 9.988815 ATTAGGCTATAGACACATCTTAACTTG 57.011 33.333 8.68 0.00 36.29 3.16
2593 3131 9.764363 CACTTCATTTATTAGGCTATAGACACA 57.236 33.333 8.68 0.00 0.00 3.72
2594 3132 9.765795 ACACTTCATTTATTAGGCTATAGACAC 57.234 33.333 8.68 0.00 0.00 3.67
2597 3135 9.273016 GCAACACTTCATTTATTAGGCTATAGA 57.727 33.333 3.21 0.00 0.00 1.98
2598 3136 9.056005 TGCAACACTTCATTTATTAGGCTATAG 57.944 33.333 0.00 0.00 0.00 1.31
2599 3137 8.972458 TGCAACACTTCATTTATTAGGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
2600 3138 7.880160 TGCAACACTTCATTTATTAGGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
2601 3139 7.339212 ACATGCAACACTTCATTTATTAGGCTA 59.661 33.333 0.00 0.00 0.00 3.93
2602 3140 6.153340 ACATGCAACACTTCATTTATTAGGCT 59.847 34.615 0.00 0.00 0.00 4.58
2603 3141 6.332630 ACATGCAACACTTCATTTATTAGGC 58.667 36.000 0.00 0.00 0.00 3.93
2604 3142 9.289303 GTAACATGCAACACTTCATTTATTAGG 57.711 33.333 0.00 0.00 0.00 2.69
2605 3143 9.289303 GGTAACATGCAACACTTCATTTATTAG 57.711 33.333 0.00 0.00 0.00 1.73
2606 3144 8.797438 TGGTAACATGCAACACTTCATTTATTA 58.203 29.630 0.00 0.00 46.17 0.98
2607 3145 7.665690 TGGTAACATGCAACACTTCATTTATT 58.334 30.769 0.00 0.00 46.17 1.40
2608 3146 7.225784 TGGTAACATGCAACACTTCATTTAT 57.774 32.000 0.00 0.00 46.17 1.40
2609 3147 6.641169 TGGTAACATGCAACACTTCATTTA 57.359 33.333 0.00 0.00 46.17 1.40
2610 3148 5.528043 TGGTAACATGCAACACTTCATTT 57.472 34.783 0.00 0.00 46.17 2.32
2626 3164 6.412214 AGGGAAGTAACATATGTGTGGTAAC 58.588 40.000 9.63 1.91 38.92 2.50
2627 3165 6.213802 TGAGGGAAGTAACATATGTGTGGTAA 59.786 38.462 9.63 0.00 38.92 2.85
2628 3166 5.722441 TGAGGGAAGTAACATATGTGTGGTA 59.278 40.000 9.63 0.00 38.92 3.25
2629 3167 4.534500 TGAGGGAAGTAACATATGTGTGGT 59.466 41.667 9.63 0.00 38.92 4.16
2630 3168 5.097742 TGAGGGAAGTAACATATGTGTGG 57.902 43.478 9.63 0.00 38.92 4.17
2631 3169 8.204160 TCTATTGAGGGAAGTAACATATGTGTG 58.796 37.037 9.63 0.00 38.92 3.82
2632 3170 8.319057 TCTATTGAGGGAAGTAACATATGTGT 57.681 34.615 9.63 2.63 41.28 3.72
2633 3171 8.824159 CTCTATTGAGGGAAGTAACATATGTG 57.176 38.462 9.63 0.00 36.70 3.21
2657 3195 9.352191 CCATGTTACTAGTCTATGTTACTACCT 57.648 37.037 0.00 0.00 0.00 3.08
2658 3196 8.574737 CCCATGTTACTAGTCTATGTTACTACC 58.425 40.741 0.00 0.00 0.00 3.18
2659 3197 8.081025 GCCCATGTTACTAGTCTATGTTACTAC 58.919 40.741 0.00 0.00 0.00 2.73
2660 3198 7.781219 TGCCCATGTTACTAGTCTATGTTACTA 59.219 37.037 0.00 0.00 0.00 1.82
2661 3199 6.610020 TGCCCATGTTACTAGTCTATGTTACT 59.390 38.462 0.00 0.00 0.00 2.24
2662 3200 6.812998 TGCCCATGTTACTAGTCTATGTTAC 58.187 40.000 0.00 0.00 0.00 2.50
2663 3201 7.441836 CATGCCCATGTTACTAGTCTATGTTA 58.558 38.462 0.00 0.00 34.23 2.41
2664 3202 5.950544 TGCCCATGTTACTAGTCTATGTT 57.049 39.130 0.00 0.00 0.00 2.71
2665 3203 5.858381 CATGCCCATGTTACTAGTCTATGT 58.142 41.667 0.00 0.00 34.23 2.29
2679 3217 5.858381 ACATAGACTAGTAACATGCCCATG 58.142 41.667 6.71 6.71 44.15 3.66
2680 3218 6.500589 AACATAGACTAGTAACATGCCCAT 57.499 37.500 0.00 0.00 0.00 4.00
2681 3219 5.950544 AACATAGACTAGTAACATGCCCA 57.049 39.130 0.00 0.00 0.00 5.36
2682 3220 9.420551 GTAATAACATAGACTAGTAACATGCCC 57.579 37.037 0.00 0.00 0.00 5.36
2683 3221 9.976511 TGTAATAACATAGACTAGTAACATGCC 57.023 33.333 0.00 0.00 0.00 4.40
2704 3242 8.157476 CCCTTTAGACTAGCCATAATGTGTAAT 58.843 37.037 0.00 0.00 0.00 1.89
2705 3243 7.506114 CCCTTTAGACTAGCCATAATGTGTAA 58.494 38.462 0.00 0.00 0.00 2.41
2706 3244 6.463897 GCCCTTTAGACTAGCCATAATGTGTA 60.464 42.308 0.00 0.00 0.00 2.90
2707 3245 5.687706 GCCCTTTAGACTAGCCATAATGTGT 60.688 44.000 0.00 0.00 0.00 3.72
2708 3246 4.757149 GCCCTTTAGACTAGCCATAATGTG 59.243 45.833 0.00 0.00 0.00 3.21
2709 3247 4.412199 TGCCCTTTAGACTAGCCATAATGT 59.588 41.667 0.00 0.00 0.00 2.71
2710 3248 4.757149 GTGCCCTTTAGACTAGCCATAATG 59.243 45.833 0.00 0.00 0.00 1.90
2711 3249 4.660771 AGTGCCCTTTAGACTAGCCATAAT 59.339 41.667 0.00 0.00 0.00 1.28
2712 3250 4.037927 AGTGCCCTTTAGACTAGCCATAA 58.962 43.478 0.00 0.00 0.00 1.90
2713 3251 3.388024 CAGTGCCCTTTAGACTAGCCATA 59.612 47.826 0.00 0.00 0.00 2.74
2714 3252 2.171448 CAGTGCCCTTTAGACTAGCCAT 59.829 50.000 0.00 0.00 0.00 4.40
2715 3253 1.555075 CAGTGCCCTTTAGACTAGCCA 59.445 52.381 0.00 0.00 0.00 4.75
2716 3254 1.555533 ACAGTGCCCTTTAGACTAGCC 59.444 52.381 0.00 0.00 0.00 3.93
2717 3255 3.700038 TCTACAGTGCCCTTTAGACTAGC 59.300 47.826 0.00 0.00 27.52 3.42
2718 3256 4.098196 GGTCTACAGTGCCCTTTAGACTAG 59.902 50.000 18.17 0.00 44.78 2.57
2719 3257 4.021916 GGTCTACAGTGCCCTTTAGACTA 58.978 47.826 18.17 0.00 44.78 2.59
2720 3258 2.832733 GGTCTACAGTGCCCTTTAGACT 59.167 50.000 18.17 0.00 44.78 3.24
2721 3259 2.565834 TGGTCTACAGTGCCCTTTAGAC 59.434 50.000 12.52 12.52 44.72 2.59
2722 3260 2.897350 TGGTCTACAGTGCCCTTTAGA 58.103 47.619 0.00 0.00 29.54 2.10
2723 3261 3.914426 ATGGTCTACAGTGCCCTTTAG 57.086 47.619 0.00 0.00 0.00 1.85
2724 3262 4.650972 AAATGGTCTACAGTGCCCTTTA 57.349 40.909 0.00 0.00 0.00 1.85
2725 3263 3.525800 AAATGGTCTACAGTGCCCTTT 57.474 42.857 0.00 0.00 0.00 3.11
2726 3264 3.525800 AAAATGGTCTACAGTGCCCTT 57.474 42.857 0.00 0.00 0.00 3.95
2727 3265 3.525800 AAAAATGGTCTACAGTGCCCT 57.474 42.857 0.00 0.00 0.00 5.19
2728 3266 4.076394 TGTAAAAATGGTCTACAGTGCCC 58.924 43.478 0.00 0.00 0.00 5.36
2729 3267 5.296813 CTGTAAAAATGGTCTACAGTGCC 57.703 43.478 0.00 0.00 38.37 5.01
2733 3271 5.940192 TGCACTGTAAAAATGGTCTACAG 57.060 39.130 6.87 6.87 45.26 2.74
2734 3272 6.701145 TTTGCACTGTAAAAATGGTCTACA 57.299 33.333 0.00 0.00 0.00 2.74
2735 3273 8.487176 CAATTTTGCACTGTAAAAATGGTCTAC 58.513 33.333 8.82 0.00 36.40 2.59
2736 3274 8.586570 CAATTTTGCACTGTAAAAATGGTCTA 57.413 30.769 8.82 0.00 36.40 2.59
2737 3275 7.481275 CAATTTTGCACTGTAAAAATGGTCT 57.519 32.000 8.82 0.00 36.40 3.85
2754 3292 1.135575 GCTCTGTCCGAGGCAATTTTG 60.136 52.381 0.00 0.00 40.25 2.44
2755 3293 1.168714 GCTCTGTCCGAGGCAATTTT 58.831 50.000 0.00 0.00 40.25 1.82
2756 3294 0.036732 TGCTCTGTCCGAGGCAATTT 59.963 50.000 0.00 0.00 40.25 1.82
2757 3295 0.392193 CTGCTCTGTCCGAGGCAATT 60.392 55.000 0.00 0.00 40.25 2.32
2758 3296 1.220206 CTGCTCTGTCCGAGGCAAT 59.780 57.895 0.00 0.00 40.25 3.56
2759 3297 1.260538 ATCTGCTCTGTCCGAGGCAA 61.261 55.000 0.00 0.00 40.25 4.52
2760 3298 1.670949 GATCTGCTCTGTCCGAGGCA 61.671 60.000 0.00 0.00 40.25 4.75
2761 3299 1.067250 GATCTGCTCTGTCCGAGGC 59.933 63.158 0.00 0.00 40.25 4.70
2762 3300 1.039068 ATGATCTGCTCTGTCCGAGG 58.961 55.000 0.00 0.00 40.25 4.63
2763 3301 1.408340 ACATGATCTGCTCTGTCCGAG 59.592 52.381 0.00 0.00 42.88 4.63
2764 3302 1.478631 ACATGATCTGCTCTGTCCGA 58.521 50.000 0.00 0.00 0.00 4.55
2765 3303 3.443099 TTACATGATCTGCTCTGTCCG 57.557 47.619 0.00 0.00 0.00 4.79
2766 3304 7.792374 TTTATTTACATGATCTGCTCTGTCC 57.208 36.000 0.00 0.00 0.00 4.02
2767 3305 8.887717 AGTTTTATTTACATGATCTGCTCTGTC 58.112 33.333 0.00 0.00 0.00 3.51
2768 3306 8.671921 CAGTTTTATTTACATGATCTGCTCTGT 58.328 33.333 0.00 0.00 0.00 3.41
2769 3307 8.671921 ACAGTTTTATTTACATGATCTGCTCTG 58.328 33.333 0.00 0.63 0.00 3.35
2770 3308 8.798859 ACAGTTTTATTTACATGATCTGCTCT 57.201 30.769 0.00 0.00 0.00 4.09
2773 3311 9.884465 GGATACAGTTTTATTTACATGATCTGC 57.116 33.333 0.00 0.00 0.00 4.26
2782 3320 9.946165 GCTACATTGGGATACAGTTTTATTTAC 57.054 33.333 0.00 0.00 39.74 2.01
2783 3321 9.914834 AGCTACATTGGGATACAGTTTTATTTA 57.085 29.630 0.00 0.00 39.74 1.40
2784 3322 8.823220 AGCTACATTGGGATACAGTTTTATTT 57.177 30.769 0.00 0.00 39.74 1.40
2785 3323 8.052748 TGAGCTACATTGGGATACAGTTTTATT 58.947 33.333 0.00 0.00 39.74 1.40
2786 3324 7.573710 TGAGCTACATTGGGATACAGTTTTAT 58.426 34.615 0.00 0.00 39.74 1.40
2787 3325 6.953101 TGAGCTACATTGGGATACAGTTTTA 58.047 36.000 0.00 0.00 39.74 1.52
2788 3326 5.815581 TGAGCTACATTGGGATACAGTTTT 58.184 37.500 0.00 0.00 39.74 2.43
2789 3327 5.435686 TGAGCTACATTGGGATACAGTTT 57.564 39.130 0.00 0.00 39.74 2.66
2790 3328 5.636903 ATGAGCTACATTGGGATACAGTT 57.363 39.130 0.00 0.00 35.45 3.16
2791 3329 5.636903 AATGAGCTACATTGGGATACAGT 57.363 39.130 9.65 0.00 45.99 3.55
2792 3330 6.949352 AAAATGAGCTACATTGGGATACAG 57.051 37.500 10.78 0.00 46.90 2.74
2813 3351 6.124340 GGAGGGAGGAATACGGAAATAAAAA 58.876 40.000 0.00 0.00 0.00 1.94
2814 3352 5.398239 GGGAGGGAGGAATACGGAAATAAAA 60.398 44.000 0.00 0.00 0.00 1.52
2815 3353 4.103627 GGGAGGGAGGAATACGGAAATAAA 59.896 45.833 0.00 0.00 0.00 1.40
2816 3354 3.649502 GGGAGGGAGGAATACGGAAATAA 59.350 47.826 0.00 0.00 0.00 1.40
2817 3355 3.245441 GGGAGGGAGGAATACGGAAATA 58.755 50.000 0.00 0.00 0.00 1.40
2818 3356 2.055579 GGGAGGGAGGAATACGGAAAT 58.944 52.381 0.00 0.00 0.00 2.17
2819 3357 1.503800 GGGAGGGAGGAATACGGAAA 58.496 55.000 0.00 0.00 0.00 3.13
2820 3358 0.757935 CGGGAGGGAGGAATACGGAA 60.758 60.000 0.00 0.00 0.00 4.30
2821 3359 1.152610 CGGGAGGGAGGAATACGGA 60.153 63.158 0.00 0.00 0.00 4.69
2822 3360 3.456317 CGGGAGGGAGGAATACGG 58.544 66.667 0.00 0.00 0.00 4.02
2834 3372 1.825281 GAGATGGGATCTGCCGGGAG 61.825 65.000 18.34 18.34 40.38 4.30
2835 3373 1.838846 GAGATGGGATCTGCCGGGA 60.839 63.158 2.18 0.00 40.38 5.14
2836 3374 2.746359 GAGATGGGATCTGCCGGG 59.254 66.667 2.18 0.00 40.38 5.73
2837 3375 2.746359 GGAGATGGGATCTGCCGG 59.254 66.667 0.00 0.00 41.33 6.13
2838 3376 2.341543 CGGAGATGGGATCTGCCG 59.658 66.667 0.00 0.00 43.90 5.69
2839 3377 2.746359 CCGGAGATGGGATCTGCC 59.254 66.667 0.00 0.00 43.90 4.85
2840 3378 2.031768 GCCGGAGATGGGATCTGC 59.968 66.667 5.05 0.00 43.42 4.26
2841 3379 2.142761 TGGCCGGAGATGGGATCTG 61.143 63.158 5.05 0.00 40.38 2.90
2842 3380 2.143419 GTGGCCGGAGATGGGATCT 61.143 63.158 5.05 0.00 43.70 2.75
2843 3381 2.427753 GTGGCCGGAGATGGGATC 59.572 66.667 5.05 0.00 0.00 3.36
2844 3382 3.550431 CGTGGCCGGAGATGGGAT 61.550 66.667 5.05 0.00 0.00 3.85
2912 3450 4.332637 GTGTGCGGTGCAAGGCAG 62.333 66.667 12.73 0.00 41.47 4.85
2927 3465 3.901797 GAAGGCACGTCAGGGGGTG 62.902 68.421 0.00 0.00 36.68 4.61
2928 3466 3.637273 GAAGGCACGTCAGGGGGT 61.637 66.667 0.00 0.00 36.68 4.95
2929 3467 4.410400 GGAAGGCACGTCAGGGGG 62.410 72.222 0.00 0.00 38.98 5.40
2930 3468 4.410400 GGGAAGGCACGTCAGGGG 62.410 72.222 0.00 0.00 38.98 4.79
2931 3469 4.760047 CGGGAAGGCACGTCAGGG 62.760 72.222 0.00 0.00 38.98 4.45
2948 3486 2.110420 CCGGGCTAAATCGGGGAC 59.890 66.667 0.00 0.00 42.32 4.46
2949 3487 3.868985 GCCGGGCTAAATCGGGGA 61.869 66.667 12.87 0.00 45.75 4.81
2950 3488 4.183858 TGCCGGGCTAAATCGGGG 62.184 66.667 21.46 0.00 45.75 5.73
2951 3489 2.900337 GTGCCGGGCTAAATCGGG 60.900 66.667 21.46 0.00 45.75 5.14
2953 3491 3.269347 CGGTGCCGGGCTAAATCG 61.269 66.667 21.46 8.44 35.56 3.34
2954 3492 3.583086 GCGGTGCCGGGCTAAATC 61.583 66.667 21.46 0.00 40.19 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.