Multiple sequence alignment - TraesCS3D01G115200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G115200 chr3D 100.000 2779 0 0 1 2779 68429483 68432261 0.000000e+00 5132.0
1 TraesCS3D01G115200 chr3D 92.074 1249 36 23 697 1927 68388804 68390007 0.000000e+00 1700.0
2 TraesCS3D01G115200 chr3D 93.296 895 42 8 757 1637 68336124 68335234 0.000000e+00 1304.0
3 TraesCS3D01G115200 chr3D 92.760 732 36 11 918 1639 68833105 68833829 0.000000e+00 1042.0
4 TraesCS3D01G115200 chr3D 85.884 928 57 33 860 1777 68842745 68843608 0.000000e+00 920.0
5 TraesCS3D01G115200 chr3D 87.829 797 63 15 861 1647 68325792 68325020 0.000000e+00 904.0
6 TraesCS3D01G115200 chr3D 88.684 380 27 9 1719 2087 68325013 68324639 1.520000e-122 449.0
7 TraesCS3D01G115200 chr3D 80.624 609 48 38 2190 2761 68834257 68834832 9.270000e-110 407.0
8 TraesCS3D01G115200 chr3D 95.359 237 7 4 1693 1927 68335251 68335017 9.400000e-100 374.0
9 TraesCS3D01G115200 chr3D 81.701 388 28 13 1708 2086 68833828 68834181 1.630000e-72 283.0
10 TraesCS3D01G115200 chr3D 89.375 160 17 0 1965 2124 68390005 68390164 4.690000e-48 202.0
11 TraesCS3D01G115200 chr3D 91.935 124 7 2 1989 2109 68329372 68329249 1.320000e-38 171.0
12 TraesCS3D01G115200 chr3D 90.351 114 8 1 1996 2109 68335018 68334908 2.230000e-31 147.0
13 TraesCS3D01G115200 chr3D 96.364 55 2 0 2070 2124 68834197 68834251 1.060000e-14 91.6
14 TraesCS3D01G115200 chr3B 92.349 1294 62 11 855 2124 112836253 112834973 0.000000e+00 1807.0
15 TraesCS3D01G115200 chr3B 91.167 1234 62 26 744 1953 112948725 112947515 0.000000e+00 1631.0
16 TraesCS3D01G115200 chr3B 90.495 1252 79 17 698 1922 113299639 113298401 0.000000e+00 1616.0
17 TraesCS3D01G115200 chr3B 85.692 1265 108 35 851 2087 113503514 113504733 0.000000e+00 1266.0
18 TraesCS3D01G115200 chr3B 88.109 1068 86 28 723 1777 112465986 112464947 0.000000e+00 1230.0
19 TraesCS3D01G115200 chr3B 93.042 848 43 10 723 1559 113483149 113483991 0.000000e+00 1225.0
20 TraesCS3D01G115200 chr3B 91.950 882 51 10 744 1612 112497481 112496607 0.000000e+00 1218.0
21 TraesCS3D01G115200 chr3B 85.925 881 95 16 700 1573 113304522 113303664 0.000000e+00 913.0
22 TraesCS3D01G115200 chr3B 90.578 329 14 9 1553 1868 113487282 113487606 1.190000e-113 420.0
23 TraesCS3D01G115200 chr3B 81.019 569 68 26 2196 2759 113298085 113297552 1.540000e-112 416.0
24 TraesCS3D01G115200 chr3B 80.579 587 65 28 2196 2759 112834961 112834401 9.270000e-110 407.0
25 TraesCS3D01G115200 chr3B 84.011 369 36 13 2196 2561 112496274 112495926 1.600000e-87 333.0
26 TraesCS3D01G115200 chr3B 94.118 204 9 2 1921 2124 113298297 113298097 9.670000e-80 307.0
27 TraesCS3D01G115200 chr3B 89.937 159 12 4 1949 2106 113487631 113487786 4.690000e-48 202.0
28 TraesCS3D01G115200 chr3A 87.341 1256 90 36 861 2087 80289674 80288459 0.000000e+00 1375.0
29 TraesCS3D01G115200 chr3A 90.970 1041 63 22 760 1773 80412785 80413821 0.000000e+00 1373.0
30 TraesCS3D01G115200 chr3A 91.616 489 25 6 1616 2093 80410286 80409803 0.000000e+00 662.0
31 TraesCS3D01G115200 chr4D 89.543 985 65 24 706 1659 134550755 134549778 0.000000e+00 1214.0
32 TraesCS3D01G115200 chr4D 86.745 1026 72 33 908 1907 134563130 134564117 0.000000e+00 1083.0
33 TraesCS3D01G115200 chr4D 93.562 233 9 2 1706 1938 134549790 134549564 2.650000e-90 342.0
34 TraesCS3D01G115200 chr4D 88.125 160 19 0 1928 2087 134564270 134564429 1.020000e-44 191.0
35 TraesCS3D01G115200 chr4D 89.865 148 15 0 1940 2087 134566410 134566263 1.020000e-44 191.0
36 TraesCS3D01G115200 chr4A 83.056 602 89 9 13 602 619406403 619407003 4.070000e-148 534.0
37 TraesCS3D01G115200 chr5B 82.410 614 95 9 1 602 692746060 692746672 8.820000e-145 523.0
38 TraesCS3D01G115200 chr5B 91.489 94 6 1 603 696 332586826 332586735 8.080000e-26 128.0
39 TraesCS3D01G115200 chr5B 91.489 94 6 1 603 696 455089417 455089326 8.080000e-26 128.0
40 TraesCS3D01G115200 chr5B 94.643 56 3 0 1326 1381 575243533 575243588 1.370000e-13 87.9
41 TraesCS3D01G115200 chr5D 82.173 589 85 19 1 576 45279625 45279044 3.220000e-134 488.0
42 TraesCS3D01G115200 chr5D 80.684 585 96 13 15 586 496952939 496952359 3.290000e-119 438.0
43 TraesCS3D01G115200 chr7B 81.313 594 100 8 17 601 68830281 68829690 3.240000e-129 472.0
44 TraesCS3D01G115200 chr7B 90.435 115 11 0 1909 2023 603660182 603660296 4.790000e-33 152.0
45 TraesCS3D01G115200 chr7B 92.553 94 5 2 603 696 160820785 160820694 1.740000e-27 134.0
46 TraesCS3D01G115200 chr2D 82.495 537 79 12 1 525 70531188 70531721 9.070000e-125 457.0
47 TraesCS3D01G115200 chr6B 81.119 572 86 19 17 574 601314362 601314925 3.290000e-119 438.0
48 TraesCS3D01G115200 chr6B 91.489 94 6 1 603 696 163452735 163452644 8.080000e-26 128.0
49 TraesCS3D01G115200 chr6B 90.722 97 7 1 600 696 262878817 262878911 8.080000e-26 128.0
50 TraesCS3D01G115200 chr6B 91.489 94 6 1 603 696 339195960 339195869 8.080000e-26 128.0
51 TraesCS3D01G115200 chr2A 82.857 490 74 8 17 497 156670474 156670962 5.500000e-117 431.0
52 TraesCS3D01G115200 chr5A 80.550 545 94 8 1 534 493773556 493774099 2.580000e-110 409.0
53 TraesCS3D01G115200 chr4B 90.722 97 7 1 600 696 156406313 156406407 8.080000e-26 128.0
54 TraesCS3D01G115200 chr1B 91.489 94 6 1 603 696 70559199 70559108 8.080000e-26 128.0
55 TraesCS3D01G115200 chr1B 91.489 94 6 1 603 696 170737893 170737802 8.080000e-26 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G115200 chr3D 68429483 68432261 2778 False 5132.000000 5132 100.000000 1 2779 1 chr3D.!!$F1 2778
1 TraesCS3D01G115200 chr3D 68388804 68390164 1360 False 951.000000 1700 90.724500 697 2124 2 chr3D.!!$F3 1427
2 TraesCS3D01G115200 chr3D 68842745 68843608 863 False 920.000000 920 85.884000 860 1777 1 chr3D.!!$F2 917
3 TraesCS3D01G115200 chr3D 68334908 68336124 1216 True 608.333333 1304 93.002000 757 2109 3 chr3D.!!$R2 1352
4 TraesCS3D01G115200 chr3D 68324639 68329372 4733 True 508.000000 904 89.482667 861 2109 3 chr3D.!!$R1 1248
5 TraesCS3D01G115200 chr3D 68833105 68834832 1727 False 455.900000 1042 87.862250 918 2761 4 chr3D.!!$F4 1843
6 TraesCS3D01G115200 chr3B 112947515 112948725 1210 True 1631.000000 1631 91.167000 744 1953 1 chr3B.!!$R2 1209
7 TraesCS3D01G115200 chr3B 113503514 113504733 1219 False 1266.000000 1266 85.692000 851 2087 1 chr3B.!!$F1 1236
8 TraesCS3D01G115200 chr3B 112464947 112465986 1039 True 1230.000000 1230 88.109000 723 1777 1 chr3B.!!$R1 1054
9 TraesCS3D01G115200 chr3B 112834401 112836253 1852 True 1107.000000 1807 86.464000 855 2759 2 chr3B.!!$R5 1904
10 TraesCS3D01G115200 chr3B 113303664 113304522 858 True 913.000000 913 85.925000 700 1573 1 chr3B.!!$R3 873
11 TraesCS3D01G115200 chr3B 113297552 113299639 2087 True 779.666667 1616 88.544000 698 2759 3 chr3B.!!$R6 2061
12 TraesCS3D01G115200 chr3B 112495926 112497481 1555 True 775.500000 1218 87.980500 744 2561 2 chr3B.!!$R4 1817
13 TraesCS3D01G115200 chr3B 113483149 113487786 4637 False 615.666667 1225 91.185667 723 2106 3 chr3B.!!$F2 1383
14 TraesCS3D01G115200 chr3A 80288459 80289674 1215 True 1375.000000 1375 87.341000 861 2087 1 chr3A.!!$R1 1226
15 TraesCS3D01G115200 chr3A 80412785 80413821 1036 False 1373.000000 1373 90.970000 760 1773 1 chr3A.!!$F1 1013
16 TraesCS3D01G115200 chr4D 134549564 134550755 1191 True 778.000000 1214 91.552500 706 1938 2 chr4D.!!$R2 1232
17 TraesCS3D01G115200 chr4D 134563130 134564429 1299 False 637.000000 1083 87.435000 908 2087 2 chr4D.!!$F1 1179
18 TraesCS3D01G115200 chr4A 619406403 619407003 600 False 534.000000 534 83.056000 13 602 1 chr4A.!!$F1 589
19 TraesCS3D01G115200 chr5B 692746060 692746672 612 False 523.000000 523 82.410000 1 602 1 chr5B.!!$F2 601
20 TraesCS3D01G115200 chr5D 45279044 45279625 581 True 488.000000 488 82.173000 1 576 1 chr5D.!!$R1 575
21 TraesCS3D01G115200 chr5D 496952359 496952939 580 True 438.000000 438 80.684000 15 586 1 chr5D.!!$R2 571
22 TraesCS3D01G115200 chr7B 68829690 68830281 591 True 472.000000 472 81.313000 17 601 1 chr7B.!!$R1 584
23 TraesCS3D01G115200 chr2D 70531188 70531721 533 False 457.000000 457 82.495000 1 525 1 chr2D.!!$F1 524
24 TraesCS3D01G115200 chr6B 601314362 601314925 563 False 438.000000 438 81.119000 17 574 1 chr6B.!!$F2 557
25 TraesCS3D01G115200 chr5A 493773556 493774099 543 False 409.000000 409 80.550000 1 534 1 chr5A.!!$F1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 226 0.105246 AGGAGGTAGATGGGCTCTGG 60.105 60.0 0.0 0.0 35.28 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 8488 0.8501 TCTCCCCAAAAGGCAGACAA 59.15 50.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.430497 CCCCTCCTCCTCCTCCGA 61.430 72.222 0.00 0.00 0.00 4.55
44 46 4.010575 ACTCCAGCGAGTCCAGAG 57.989 61.111 0.00 0.00 46.90 3.35
45 47 1.680651 ACTCCAGCGAGTCCAGAGG 60.681 63.158 0.00 0.00 46.90 3.69
46 48 3.071206 TCCAGCGAGTCCAGAGGC 61.071 66.667 0.00 0.00 0.00 4.70
47 49 3.385384 CCAGCGAGTCCAGAGGCA 61.385 66.667 0.00 0.00 0.00 4.75
49 51 3.768922 AGCGAGTCCAGAGGCAGC 61.769 66.667 0.00 0.00 0.00 5.25
50 52 4.828925 GCGAGTCCAGAGGCAGCC 62.829 72.222 1.84 1.84 0.00 4.85
51 53 3.073735 CGAGTCCAGAGGCAGCCT 61.074 66.667 16.12 16.12 36.03 4.58
52 54 2.583520 GAGTCCAGAGGCAGCCTG 59.416 66.667 22.26 6.12 31.76 4.85
56 58 4.798344 CCAGAGGCAGCCTGGCAG 62.798 72.222 22.26 14.82 46.46 4.85
61 63 4.552365 GGCAGCCTGGCAGCGATA 62.552 66.667 26.58 0.00 41.94 2.92
62 64 3.275338 GCAGCCTGGCAGCGATAC 61.275 66.667 20.45 0.00 38.01 2.24
63 65 2.963854 CAGCCTGGCAGCGATACG 60.964 66.667 22.65 0.00 38.01 3.06
64 66 4.227134 AGCCTGGCAGCGATACGG 62.227 66.667 22.65 0.00 38.01 4.02
92 94 2.586357 GCTTGTCTCGCCCGGATC 60.586 66.667 0.73 0.00 0.00 3.36
93 95 3.082579 GCTTGTCTCGCCCGGATCT 62.083 63.158 0.73 0.00 0.00 2.75
94 96 1.066587 CTTGTCTCGCCCGGATCTC 59.933 63.158 0.73 0.00 0.00 2.75
95 97 2.356818 CTTGTCTCGCCCGGATCTCC 62.357 65.000 0.73 0.00 0.00 3.71
96 98 2.519780 GTCTCGCCCGGATCTCCT 60.520 66.667 0.73 0.00 0.00 3.69
97 99 2.519541 TCTCGCCCGGATCTCCTG 60.520 66.667 0.73 0.00 0.00 3.86
100 102 4.598894 CGCCCGGATCTCCTGCAG 62.599 72.222 6.78 6.78 32.91 4.41
101 103 4.247380 GCCCGGATCTCCTGCAGG 62.247 72.222 27.87 27.87 33.38 4.85
103 105 1.840650 CCCGGATCTCCTGCAGGAT 60.841 63.158 35.11 22.36 44.46 3.24
104 106 1.670590 CCGGATCTCCTGCAGGATC 59.329 63.158 35.11 28.42 44.46 3.36
106 108 0.602562 CGGATCTCCTGCAGGATCTC 59.397 60.000 35.11 29.61 44.46 2.75
107 109 1.714541 GGATCTCCTGCAGGATCTCA 58.285 55.000 35.11 19.38 44.46 3.27
108 110 2.259012 GGATCTCCTGCAGGATCTCAT 58.741 52.381 35.11 22.88 44.46 2.90
110 112 3.195396 GGATCTCCTGCAGGATCTCATAC 59.805 52.174 35.11 20.39 44.46 2.39
111 113 2.603021 TCTCCTGCAGGATCTCATACC 58.397 52.381 35.11 0.00 44.46 2.73
113 115 0.319728 CCTGCAGGATCTCATACCGG 59.680 60.000 29.88 0.00 37.39 5.28
114 116 0.320247 CTGCAGGATCTCATACCGGC 60.320 60.000 5.57 0.00 44.93 6.13
115 117 1.373497 GCAGGATCTCATACCGGCG 60.373 63.158 0.00 0.00 37.58 6.46
116 118 1.373497 CAGGATCTCATACCGGCGC 60.373 63.158 0.00 0.00 0.00 6.53
117 119 1.531840 AGGATCTCATACCGGCGCT 60.532 57.895 7.64 0.00 0.00 5.92
118 120 1.080434 GGATCTCATACCGGCGCTC 60.080 63.158 7.64 0.00 0.00 5.03
119 121 1.080434 GATCTCATACCGGCGCTCC 60.080 63.158 7.64 0.00 0.00 4.70
142 144 2.732366 CGTGAGCATTGCGTAGTATCT 58.268 47.619 2.38 0.00 0.00 1.98
143 145 2.469147 CGTGAGCATTGCGTAGTATCTG 59.531 50.000 2.38 0.00 0.00 2.90
144 146 3.706698 GTGAGCATTGCGTAGTATCTGA 58.293 45.455 2.38 0.00 0.00 3.27
145 147 4.302455 GTGAGCATTGCGTAGTATCTGAT 58.698 43.478 2.38 0.00 0.00 2.90
146 148 4.384247 GTGAGCATTGCGTAGTATCTGATC 59.616 45.833 2.38 0.00 0.00 2.92
147 149 4.279420 TGAGCATTGCGTAGTATCTGATCT 59.721 41.667 2.38 0.00 0.00 2.75
148 150 5.207110 AGCATTGCGTAGTATCTGATCTT 57.793 39.130 2.38 0.00 0.00 2.40
150 152 5.694006 AGCATTGCGTAGTATCTGATCTTTC 59.306 40.000 2.38 0.00 0.00 2.62
151 153 5.694006 GCATTGCGTAGTATCTGATCTTTCT 59.306 40.000 0.00 0.00 0.00 2.52
153 155 5.440234 TGCGTAGTATCTGATCTTTCTCC 57.560 43.478 0.00 0.00 0.00 3.71
154 156 4.023963 TGCGTAGTATCTGATCTTTCTCCG 60.024 45.833 0.00 0.00 0.00 4.63
158 160 5.523438 AGTATCTGATCTTTCTCCGGAAC 57.477 43.478 5.23 0.00 0.00 3.62
159 161 4.956700 AGTATCTGATCTTTCTCCGGAACA 59.043 41.667 5.23 0.00 0.00 3.18
161 163 4.128925 TCTGATCTTTCTCCGGAACATG 57.871 45.455 5.23 0.00 0.00 3.21
162 164 3.118629 TCTGATCTTTCTCCGGAACATGG 60.119 47.826 5.23 0.00 0.00 3.66
163 165 1.943340 GATCTTTCTCCGGAACATGGC 59.057 52.381 5.23 0.00 0.00 4.40
164 166 0.391130 TCTTTCTCCGGAACATGGCG 60.391 55.000 5.23 0.00 0.00 5.69
165 167 1.369091 CTTTCTCCGGAACATGGCGG 61.369 60.000 5.23 0.00 0.00 6.13
166 168 1.832719 TTTCTCCGGAACATGGCGGA 61.833 55.000 5.23 0.00 0.00 5.54
167 169 2.202932 CTCCGGAACATGGCGGAG 60.203 66.667 5.23 0.00 41.38 4.63
186 188 3.867771 GCAAGAGCGTGGACAGAG 58.132 61.111 0.00 0.00 0.00 3.35
187 189 2.386660 GCAAGAGCGTGGACAGAGC 61.387 63.158 0.00 0.00 0.00 4.09
190 192 2.433318 GAGCGTGGACAGAGCACC 60.433 66.667 0.00 0.00 0.00 5.01
192 194 2.740055 GCGTGGACAGAGCACCAG 60.740 66.667 0.00 0.00 36.82 4.00
193 195 3.051210 CGTGGACAGAGCACCAGA 58.949 61.111 0.00 0.00 36.82 3.86
194 196 1.080230 CGTGGACAGAGCACCAGAG 60.080 63.158 0.00 0.00 36.82 3.35
196 198 2.125753 GGACAGAGCACCAGAGCG 60.126 66.667 0.00 0.00 40.15 5.03
197 199 2.125753 GACAGAGCACCAGAGCGG 60.126 66.667 0.00 0.00 40.15 5.52
198 200 3.655810 GACAGAGCACCAGAGCGGG 62.656 68.421 0.00 0.00 40.22 6.13
199 201 3.385384 CAGAGCACCAGAGCGGGA 61.385 66.667 0.00 0.00 40.22 5.14
200 202 3.073735 AGAGCACCAGAGCGGGAG 61.074 66.667 0.00 0.00 40.22 4.30
201 203 3.071206 GAGCACCAGAGCGGGAGA 61.071 66.667 0.00 0.00 40.22 3.71
202 204 3.073735 AGCACCAGAGCGGGAGAG 61.074 66.667 0.00 0.00 40.22 3.20
204 206 2.363018 CACCAGAGCGGGAGAGGA 60.363 66.667 0.00 0.00 40.22 3.71
205 207 1.984570 CACCAGAGCGGGAGAGGAA 60.985 63.158 0.00 0.00 40.22 3.36
206 208 1.684049 ACCAGAGCGGGAGAGGAAG 60.684 63.158 0.00 0.00 40.22 3.46
207 209 2.430610 CCAGAGCGGGAGAGGAAGG 61.431 68.421 0.00 0.00 0.00 3.46
209 211 1.076339 AGAGCGGGAGAGGAAGGAG 60.076 63.158 0.00 0.00 0.00 3.69
210 212 2.042435 AGCGGGAGAGGAAGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
211 213 2.364448 GCGGGAGAGGAAGGAGGT 60.364 66.667 0.00 0.00 0.00 3.85
213 215 1.110518 GCGGGAGAGGAAGGAGGTAG 61.111 65.000 0.00 0.00 0.00 3.18
214 216 0.551879 CGGGAGAGGAAGGAGGTAGA 59.448 60.000 0.00 0.00 0.00 2.59
216 218 2.604139 GGGAGAGGAAGGAGGTAGATG 58.396 57.143 0.00 0.00 0.00 2.90
218 220 2.604139 GAGAGGAAGGAGGTAGATGGG 58.396 57.143 0.00 0.00 0.00 4.00
219 221 1.052617 GAGGAAGGAGGTAGATGGGC 58.947 60.000 0.00 0.00 0.00 5.36
220 222 0.644937 AGGAAGGAGGTAGATGGGCT 59.355 55.000 0.00 0.00 0.00 5.19
221 223 1.052617 GGAAGGAGGTAGATGGGCTC 58.947 60.000 0.00 0.00 0.00 4.70
222 224 1.413808 GGAAGGAGGTAGATGGGCTCT 60.414 57.143 0.00 0.00 38.06 4.09
224 226 0.105246 AGGAGGTAGATGGGCTCTGG 60.105 60.000 0.00 0.00 35.28 3.86
225 227 1.751563 GAGGTAGATGGGCTCTGGC 59.248 63.158 0.00 0.00 35.28 4.85
226 228 2.093537 GAGGTAGATGGGCTCTGGCG 62.094 65.000 0.00 0.00 39.81 5.69
228 230 3.550431 TAGATGGGCTCTGGCGGC 61.550 66.667 0.00 0.00 39.81 6.53
236 238 4.869440 CTCTGGCGGCGCTGAGAG 62.869 72.222 33.89 32.84 33.68 3.20
245 247 3.465403 CGCTGAGAGGGGGAGGTG 61.465 72.222 0.00 0.00 0.00 4.00
246 248 2.039624 GCTGAGAGGGGGAGGTGA 59.960 66.667 0.00 0.00 0.00 4.02
247 249 1.613630 GCTGAGAGGGGGAGGTGAA 60.614 63.158 0.00 0.00 0.00 3.18
248 250 0.985490 GCTGAGAGGGGGAGGTGAAT 60.985 60.000 0.00 0.00 0.00 2.57
250 252 0.621571 TGAGAGGGGGAGGTGAATGG 60.622 60.000 0.00 0.00 0.00 3.16
251 253 1.308216 AGAGGGGGAGGTGAATGGG 60.308 63.158 0.00 0.00 0.00 4.00
252 254 3.023735 AGGGGGAGGTGAATGGGC 61.024 66.667 0.00 0.00 0.00 5.36
255 257 1.709994 GGGGGAGGTGAATGGGCTAG 61.710 65.000 0.00 0.00 0.00 3.42
257 259 1.709994 GGGAGGTGAATGGGCTAGGG 61.710 65.000 0.00 0.00 0.00 3.53
259 261 0.919710 GAGGTGAATGGGCTAGGGTT 59.080 55.000 0.00 0.00 0.00 4.11
261 263 1.037579 GGTGAATGGGCTAGGGTTGC 61.038 60.000 0.00 0.00 0.00 4.17
263 265 1.823899 GAATGGGCTAGGGTTGCGG 60.824 63.158 0.00 0.00 0.00 5.69
264 266 3.358932 AATGGGCTAGGGTTGCGGG 62.359 63.158 0.00 0.00 0.00 6.13
282 284 1.820481 GCGCCGGCCAGGTTAAATA 60.820 57.895 23.46 0.00 43.70 1.40
283 285 1.782028 GCGCCGGCCAGGTTAAATAG 61.782 60.000 23.46 2.56 43.70 1.73
285 287 1.306148 GCCGGCCAGGTTAAATAGAC 58.694 55.000 18.11 0.00 43.70 2.59
286 288 1.578583 CCGGCCAGGTTAAATAGACG 58.421 55.000 2.24 0.00 34.51 4.18
289 291 1.211212 GGCCAGGTTAAATAGACGGGT 59.789 52.381 0.00 0.00 0.00 5.28
291 293 3.349927 GCCAGGTTAAATAGACGGGTTT 58.650 45.455 0.00 0.00 0.00 3.27
292 294 3.128068 GCCAGGTTAAATAGACGGGTTTG 59.872 47.826 0.00 0.00 0.00 2.93
293 295 3.692593 CCAGGTTAAATAGACGGGTTTGG 59.307 47.826 0.00 0.00 0.00 3.28
297 299 4.633126 GGTTAAATAGACGGGTTTGGTCTC 59.367 45.833 0.00 0.00 43.39 3.36
299 301 0.822164 ATAGACGGGTTTGGTCTCGG 59.178 55.000 0.00 0.00 43.39 4.63
300 302 1.252904 TAGACGGGTTTGGTCTCGGG 61.253 60.000 0.00 0.00 43.39 5.14
301 303 4.324991 ACGGGTTTGGTCTCGGGC 62.325 66.667 0.00 0.00 0.00 6.13
302 304 4.323477 CGGGTTTGGTCTCGGGCA 62.323 66.667 0.00 0.00 0.00 5.36
303 305 2.359975 GGGTTTGGTCTCGGGCAG 60.360 66.667 0.00 0.00 0.00 4.85
304 306 3.056328 GGTTTGGTCTCGGGCAGC 61.056 66.667 0.00 0.00 0.00 5.25
305 307 3.423154 GTTTGGTCTCGGGCAGCG 61.423 66.667 0.00 0.00 0.00 5.18
306 308 3.621805 TTTGGTCTCGGGCAGCGA 61.622 61.111 0.00 0.00 0.00 4.93
307 309 3.589654 TTTGGTCTCGGGCAGCGAG 62.590 63.158 6.81 6.81 35.05 5.03
335 337 4.349871 GCCACGCGACGTTCACAC 62.350 66.667 15.93 0.00 38.32 3.82
336 338 3.698463 CCACGCGACGTTCACACC 61.698 66.667 15.93 0.00 38.32 4.16
337 339 4.042060 CACGCGACGTTCACACCG 62.042 66.667 15.93 0.00 38.32 4.94
359 361 3.063084 GACGGAGGAGGCGTCTGT 61.063 66.667 0.00 1.64 40.00 3.41
360 362 3.053849 GACGGAGGAGGCGTCTGTC 62.054 68.421 0.00 11.76 43.83 3.51
363 365 2.750637 GAGGAGGCGTCTGTCGGA 60.751 66.667 0.00 0.00 40.26 4.55
364 366 3.053849 GAGGAGGCGTCTGTCGGAC 62.054 68.421 0.00 0.00 41.28 4.79
365 367 4.131088 GGAGGCGTCTGTCGGACC 62.131 72.222 0.00 0.00 41.64 4.46
366 368 4.477975 GAGGCGTCTGTCGGACCG 62.478 72.222 7.84 7.84 41.64 4.79
386 388 4.772687 GGGTTTCCGGGCGAGTCC 62.773 72.222 0.00 0.00 0.00 3.85
405 407 4.760047 CGTGGGACCCTTCGCCAG 62.760 72.222 13.00 0.00 33.68 4.85
406 408 3.637273 GTGGGACCCTTCGCCAGT 61.637 66.667 13.00 0.00 33.68 4.00
407 409 3.319198 TGGGACCCTTCGCCAGTC 61.319 66.667 13.00 0.00 33.68 3.51
410 412 1.684734 GGACCCTTCGCCAGTCCTA 60.685 63.158 1.17 0.00 45.49 2.94
411 413 1.516423 GACCCTTCGCCAGTCCTAC 59.484 63.158 0.00 0.00 0.00 3.18
412 414 1.229082 ACCCTTCGCCAGTCCTACA 60.229 57.895 0.00 0.00 0.00 2.74
413 415 0.617820 ACCCTTCGCCAGTCCTACAT 60.618 55.000 0.00 0.00 0.00 2.29
414 416 0.179073 CCCTTCGCCAGTCCTACATG 60.179 60.000 0.00 0.00 0.00 3.21
416 418 1.471676 CCTTCGCCAGTCCTACATGAC 60.472 57.143 0.00 0.00 35.43 3.06
417 419 0.172578 TTCGCCAGTCCTACATGACG 59.827 55.000 0.00 0.00 40.26 4.35
418 420 1.226974 CGCCAGTCCTACATGACGG 60.227 63.158 0.00 0.00 40.26 4.79
421 423 1.226974 CAGTCCTACATGACGGGCG 60.227 63.158 0.00 0.00 40.26 6.13
422 424 2.585247 GTCCTACATGACGGGCGC 60.585 66.667 0.00 0.00 0.00 6.53
423 425 4.201679 TCCTACATGACGGGCGCG 62.202 66.667 22.69 22.69 0.00 6.86
448 450 4.314440 GCCGCCATATCCGCCTCA 62.314 66.667 0.00 0.00 0.00 3.86
449 451 2.665000 CCGCCATATCCGCCTCAT 59.335 61.111 0.00 0.00 0.00 2.90
450 452 1.897423 CCGCCATATCCGCCTCATA 59.103 57.895 0.00 0.00 0.00 2.15
451 453 0.465705 CCGCCATATCCGCCTCATAT 59.534 55.000 0.00 0.00 0.00 1.78
452 454 1.134401 CCGCCATATCCGCCTCATATT 60.134 52.381 0.00 0.00 0.00 1.28
454 456 2.352651 CGCCATATCCGCCTCATATTTG 59.647 50.000 0.00 0.00 0.00 2.32
455 457 2.684881 GCCATATCCGCCTCATATTTGG 59.315 50.000 0.00 0.00 0.00 3.28
456 458 3.282021 CCATATCCGCCTCATATTTGGG 58.718 50.000 0.00 0.00 0.00 4.12
457 459 2.489938 TATCCGCCTCATATTTGGGC 57.510 50.000 5.85 5.85 42.18 5.36
458 460 0.773644 ATCCGCCTCATATTTGGGCT 59.226 50.000 11.69 0.00 43.29 5.19
459 461 0.179020 TCCGCCTCATATTTGGGCTG 60.179 55.000 11.69 7.16 43.29 4.85
460 462 1.174712 CCGCCTCATATTTGGGCTGG 61.175 60.000 11.69 10.63 43.29 4.85
461 463 0.179020 CGCCTCATATTTGGGCTGGA 60.179 55.000 11.69 0.00 43.29 3.86
462 464 1.546323 CGCCTCATATTTGGGCTGGAT 60.546 52.381 11.69 0.00 43.29 3.41
464 466 3.623203 CGCCTCATATTTGGGCTGGATAT 60.623 47.826 11.69 0.00 43.29 1.63
465 467 3.698040 GCCTCATATTTGGGCTGGATATG 59.302 47.826 7.92 7.65 42.31 1.78
466 468 4.568380 GCCTCATATTTGGGCTGGATATGA 60.568 45.833 12.87 12.87 42.31 2.15
468 470 5.183530 TCATATTTGGGCTGGATATGAGG 57.816 43.478 10.80 0.00 37.67 3.86
469 471 2.986534 ATTTGGGCTGGATATGAGGG 57.013 50.000 0.00 0.00 0.00 4.30
471 473 0.328450 TTGGGCTGGATATGAGGGGT 60.328 55.000 0.00 0.00 0.00 4.95
472 474 1.061905 TGGGCTGGATATGAGGGGTG 61.062 60.000 0.00 0.00 0.00 4.61
473 475 1.073897 GGCTGGATATGAGGGGTGC 59.926 63.158 0.00 0.00 0.00 5.01
475 477 1.372683 CTGGATATGAGGGGTGCCG 59.627 63.158 0.00 0.00 0.00 5.69
476 478 2.116983 CTGGATATGAGGGGTGCCGG 62.117 65.000 0.00 0.00 0.00 6.13
477 479 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
478 480 1.371558 GATATGAGGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
479 481 1.383943 ATATGAGGGGTGCCGGTCA 60.384 57.895 1.90 0.00 0.00 4.02
480 482 1.410850 ATATGAGGGGTGCCGGTCAG 61.411 60.000 1.90 0.00 0.00 3.51
492 494 4.394712 GGTCAGCCCGGGTGTCTG 62.395 72.222 24.63 20.73 32.43 3.51
494 496 2.997315 TCAGCCCGGGTGTCTGAG 60.997 66.667 24.63 4.48 33.42 3.35
495 497 4.087892 CAGCCCGGGTGTCTGAGG 62.088 72.222 24.63 0.00 0.00 3.86
501 503 3.637273 GGGTGTCTGAGGCCCGTT 61.637 66.667 0.00 0.00 32.16 4.44
502 504 2.430367 GGTGTCTGAGGCCCGTTT 59.570 61.111 0.00 0.00 0.00 3.60
503 505 1.966451 GGTGTCTGAGGCCCGTTTG 60.966 63.158 0.00 0.00 0.00 2.93
504 506 1.966451 GTGTCTGAGGCCCGTTTGG 60.966 63.158 0.00 0.00 37.09 3.28
522 524 1.988015 GGGGGTCGTCTGGATCAAA 59.012 57.895 0.00 0.00 0.00 2.69
523 525 0.326927 GGGGGTCGTCTGGATCAAAA 59.673 55.000 0.00 0.00 0.00 2.44
524 526 1.271707 GGGGGTCGTCTGGATCAAAAA 60.272 52.381 0.00 0.00 0.00 1.94
525 527 2.620627 GGGGGTCGTCTGGATCAAAAAT 60.621 50.000 0.00 0.00 0.00 1.82
526 528 3.089284 GGGGTCGTCTGGATCAAAAATT 58.911 45.455 0.00 0.00 0.00 1.82
527 529 3.119495 GGGGTCGTCTGGATCAAAAATTG 60.119 47.826 0.00 0.00 0.00 2.32
528 530 3.506067 GGGTCGTCTGGATCAAAAATTGT 59.494 43.478 0.00 0.00 0.00 2.71
529 531 4.475944 GGTCGTCTGGATCAAAAATTGTG 58.524 43.478 0.00 0.00 0.00 3.33
530 532 4.215399 GGTCGTCTGGATCAAAAATTGTGA 59.785 41.667 0.00 0.00 0.00 3.58
531 533 5.147162 GTCGTCTGGATCAAAAATTGTGAC 58.853 41.667 0.00 0.00 0.00 3.67
532 534 4.215399 TCGTCTGGATCAAAAATTGTGACC 59.785 41.667 0.00 0.00 0.00 4.02
533 535 4.475944 GTCTGGATCAAAAATTGTGACCG 58.524 43.478 0.00 0.00 0.00 4.79
534 536 3.505680 TCTGGATCAAAAATTGTGACCGG 59.494 43.478 0.00 0.00 0.00 5.28
536 538 3.254657 TGGATCAAAAATTGTGACCGGTC 59.745 43.478 28.17 28.17 0.00 4.79
539 541 3.283751 TCAAAAATTGTGACCGGTCAGT 58.716 40.909 37.04 22.54 40.75 3.41
540 542 3.066064 TCAAAAATTGTGACCGGTCAGTG 59.934 43.478 37.04 22.92 40.75 3.66
541 543 0.951558 AAATTGTGACCGGTCAGTGC 59.048 50.000 37.04 25.09 40.75 4.40
542 544 0.889186 AATTGTGACCGGTCAGTGCC 60.889 55.000 37.04 24.72 40.75 5.01
543 545 2.748058 ATTGTGACCGGTCAGTGCCC 62.748 60.000 37.04 24.35 40.75 5.36
545 547 3.625897 TGACCGGTCAGTGCCCAG 61.626 66.667 33.23 0.00 34.14 4.45
546 548 3.311110 GACCGGTCAGTGCCCAGA 61.311 66.667 29.75 0.00 0.00 3.86
547 549 3.591254 GACCGGTCAGTGCCCAGAC 62.591 68.421 29.75 0.00 0.00 3.51
548 550 4.742201 CCGGTCAGTGCCCAGACG 62.742 72.222 0.00 0.00 35.63 4.18
549 551 3.680786 CGGTCAGTGCCCAGACGA 61.681 66.667 0.00 0.00 35.63 4.20
550 552 2.048127 GGTCAGTGCCCAGACGAC 60.048 66.667 0.00 0.00 35.63 4.34
551 553 2.048127 GTCAGTGCCCAGACGACC 60.048 66.667 0.00 0.00 0.00 4.79
552 554 3.311110 TCAGTGCCCAGACGACCC 61.311 66.667 0.00 0.00 0.00 4.46
553 555 4.742201 CAGTGCCCAGACGACCCG 62.742 72.222 0.00 0.00 0.00 5.28
568 570 4.235762 CCGCCCGGGTGTATGAGG 62.236 72.222 31.53 12.24 0.00 3.86
570 572 4.910585 GCCCGGGTGTATGAGGCG 62.911 72.222 24.63 0.00 33.18 5.52
571 573 4.235762 CCCGGGTGTATGAGGCGG 62.236 72.222 14.18 0.00 0.00 6.13
572 574 4.235762 CCGGGTGTATGAGGCGGG 62.236 72.222 0.00 0.00 0.00 6.13
573 575 3.467226 CGGGTGTATGAGGCGGGT 61.467 66.667 0.00 0.00 0.00 5.28
575 577 1.301954 GGGTGTATGAGGCGGGTTT 59.698 57.895 0.00 0.00 0.00 3.27
576 578 1.029947 GGGTGTATGAGGCGGGTTTG 61.030 60.000 0.00 0.00 0.00 2.93
578 580 1.029947 GTGTATGAGGCGGGTTTGGG 61.030 60.000 0.00 0.00 0.00 4.12
579 581 1.453197 GTATGAGGCGGGTTTGGGG 60.453 63.158 0.00 0.00 0.00 4.96
589 591 4.397832 GTTTGGGGCGTCCGGCTA 62.398 66.667 13.05 0.30 42.94 3.93
591 593 3.193469 TTTGGGGCGTCCGGCTAAA 62.193 57.895 13.05 11.44 42.94 1.85
592 594 3.615509 TTGGGGCGTCCGGCTAAAG 62.616 63.158 13.05 0.00 42.94 1.85
593 595 3.777910 GGGGCGTCCGGCTAAAGA 61.778 66.667 13.05 0.00 42.94 2.52
594 596 2.504519 GGGCGTCCGGCTAAAGAT 59.495 61.111 13.05 0.00 42.94 2.40
597 599 1.521681 GCGTCCGGCTAAAGATGCT 60.522 57.895 0.00 0.00 40.99 3.79
598 600 1.090052 GCGTCCGGCTAAAGATGCTT 61.090 55.000 0.00 0.00 40.99 3.91
599 601 1.369625 CGTCCGGCTAAAGATGCTTT 58.630 50.000 0.00 0.00 0.00 3.51
602 604 3.059597 CGTCCGGCTAAAGATGCTTTATG 60.060 47.826 0.00 0.00 0.00 1.90
605 607 4.756642 TCCGGCTAAAGATGCTTTATGATG 59.243 41.667 0.00 0.00 0.00 3.07
606 608 4.470462 CGGCTAAAGATGCTTTATGATGC 58.530 43.478 0.00 0.00 0.00 3.91
607 609 4.470462 GGCTAAAGATGCTTTATGATGCG 58.530 43.478 0.00 0.00 0.00 4.73
609 611 4.023707 GCTAAAGATGCTTTATGATGCGGT 60.024 41.667 0.00 0.00 0.00 5.68
610 612 4.989279 AAAGATGCTTTATGATGCGGTT 57.011 36.364 0.00 0.00 0.00 4.44
611 613 4.989279 AAGATGCTTTATGATGCGGTTT 57.011 36.364 0.00 0.00 0.00 3.27
612 614 4.297299 AGATGCTTTATGATGCGGTTTG 57.703 40.909 0.00 0.00 0.00 2.93
614 616 4.398988 AGATGCTTTATGATGCGGTTTGAA 59.601 37.500 0.00 0.00 0.00 2.69
615 617 4.717233 TGCTTTATGATGCGGTTTGAAT 57.283 36.364 0.00 0.00 0.00 2.57
616 618 4.671377 TGCTTTATGATGCGGTTTGAATC 58.329 39.130 0.00 0.00 32.61 2.52
617 619 4.157472 TGCTTTATGATGCGGTTTGAATCA 59.843 37.500 0.00 0.00 46.90 2.57
618 620 5.101628 GCTTTATGATGCGGTTTGAATCAA 58.898 37.500 0.00 0.00 45.96 2.57
619 621 5.576384 GCTTTATGATGCGGTTTGAATCAAA 59.424 36.000 4.03 4.03 45.96 2.69
620 622 6.454186 GCTTTATGATGCGGTTTGAATCAAAC 60.454 38.462 25.84 25.84 45.96 2.93
635 637 7.566760 TGAATCAAACACACACATCTAAGTT 57.433 32.000 0.00 0.00 0.00 2.66
637 639 5.749596 TCAAACACACACATCTAAGTTGG 57.250 39.130 0.00 0.00 0.00 3.77
638 640 5.189928 TCAAACACACACATCTAAGTTGGT 58.810 37.500 0.00 0.00 0.00 3.67
640 642 4.415881 ACACACACATCTAAGTTGGTCA 57.584 40.909 0.00 0.00 0.00 4.02
641 643 4.776349 ACACACACATCTAAGTTGGTCAA 58.224 39.130 0.00 0.00 0.00 3.18
642 644 5.189928 ACACACACATCTAAGTTGGTCAAA 58.810 37.500 0.00 0.00 0.00 2.69
643 645 5.827797 ACACACACATCTAAGTTGGTCAAAT 59.172 36.000 0.00 0.00 0.00 2.32
646 648 7.167968 CACACACATCTAAGTTGGTCAAATTTG 59.832 37.037 12.15 12.15 30.75 2.32
647 649 6.144402 CACACATCTAAGTTGGTCAAATTTGC 59.856 38.462 13.54 8.47 30.75 3.68
649 651 5.539955 ACATCTAAGTTGGTCAAATTTGCCT 59.460 36.000 23.31 11.91 30.75 4.75
650 652 6.719370 ACATCTAAGTTGGTCAAATTTGCCTA 59.281 34.615 23.31 17.05 30.75 3.93
651 653 7.232534 ACATCTAAGTTGGTCAAATTTGCCTAA 59.767 33.333 23.31 12.14 30.75 2.69
653 655 4.600692 AGTTGGTCAAATTTGCCTAACC 57.399 40.909 20.40 18.28 0.00 2.85
655 657 4.653801 AGTTGGTCAAATTTGCCTAACCTT 59.346 37.500 20.40 4.99 0.00 3.50
656 658 5.836358 AGTTGGTCAAATTTGCCTAACCTTA 59.164 36.000 20.40 10.02 0.00 2.69
666 668 2.871096 CCTAACCTTAGGTGTGGCAA 57.129 50.000 3.99 0.00 44.26 4.52
667 669 3.366052 CCTAACCTTAGGTGTGGCAAT 57.634 47.619 3.99 0.00 44.26 3.56
668 670 3.279434 CCTAACCTTAGGTGTGGCAATC 58.721 50.000 3.99 0.00 44.26 2.67
669 671 3.054361 CCTAACCTTAGGTGTGGCAATCT 60.054 47.826 3.99 0.00 44.26 2.40
670 672 3.525800 AACCTTAGGTGTGGCAATCTT 57.474 42.857 3.99 0.00 35.34 2.40
672 674 4.222124 ACCTTAGGTGTGGCAATCTTAG 57.778 45.455 1.74 0.00 32.98 2.18
673 675 2.945668 CCTTAGGTGTGGCAATCTTAGC 59.054 50.000 0.00 0.00 0.00 3.09
687 689 5.643777 GCAATCTTAGCCAAACTTAGTCTCA 59.356 40.000 0.00 0.00 0.00 3.27
688 690 6.149474 GCAATCTTAGCCAAACTTAGTCTCAA 59.851 38.462 0.00 0.00 0.00 3.02
689 691 7.308589 GCAATCTTAGCCAAACTTAGTCTCAAA 60.309 37.037 0.00 0.00 0.00 2.69
692 694 4.164843 AGCCAAACTTAGTCTCAAACCA 57.835 40.909 0.00 0.00 0.00 3.67
693 695 4.532834 AGCCAAACTTAGTCTCAAACCAA 58.467 39.130 0.00 0.00 0.00 3.67
694 696 4.953579 AGCCAAACTTAGTCTCAAACCAAA 59.046 37.500 0.00 0.00 0.00 3.28
702 704 6.715264 ACTTAGTCTCAAACCAAACCAATAGG 59.285 38.462 0.00 0.00 42.21 2.57
931 3655 2.650322 TGTTCCACCACCTTTCAGAAC 58.350 47.619 0.00 0.00 35.35 3.01
1602 7886 1.913685 CGTCGAATCGAAGCAGAGC 59.086 57.895 7.01 0.00 37.72 4.09
1647 7952 4.389992 GTGATGAGTAATGGAGTGTGTGTG 59.610 45.833 0.00 0.00 0.00 3.82
1648 7953 4.040339 TGATGAGTAATGGAGTGTGTGTGT 59.960 41.667 0.00 0.00 0.00 3.72
1649 7954 3.727726 TGAGTAATGGAGTGTGTGTGTG 58.272 45.455 0.00 0.00 0.00 3.82
1650 7955 3.133901 TGAGTAATGGAGTGTGTGTGTGT 59.866 43.478 0.00 0.00 0.00 3.72
1651 7956 3.466836 AGTAATGGAGTGTGTGTGTGTG 58.533 45.455 0.00 0.00 0.00 3.82
1987 8488 7.669427 TGTCTTGGCATTTTCATCTTAACAAT 58.331 30.769 0.00 0.00 0.00 2.71
2003 8504 1.693606 ACAATTGTCTGCCTTTTGGGG 59.306 47.619 4.92 0.00 40.82 4.96
2014 8515 4.344104 TGCCTTTTGGGGAGATAGAAAAG 58.656 43.478 0.00 0.00 40.82 2.27
2016 8517 3.701542 CCTTTTGGGGAGATAGAAAAGGC 59.298 47.826 0.00 0.00 44.46 4.35
2027 8528 6.828785 GGAGATAGAAAAGGCAAATTCCAGTA 59.171 38.462 0.00 0.00 0.00 2.74
2124 8663 9.295825 GATCGAGGTATGAGGATATATGAGATT 57.704 37.037 0.00 0.00 0.00 2.40
2130 8669 9.632807 GGTATGAGGATATATGAGATTATTCGC 57.367 37.037 0.00 0.00 0.00 4.70
2134 8673 9.942850 TGAGGATATATGAGATTATTCGCAAAA 57.057 29.630 0.00 0.00 35.21 2.44
2340 8881 1.922447 TGGGAAATGCCATGGTACTCT 59.078 47.619 14.67 0.00 38.95 3.24
2341 8882 2.092429 TGGGAAATGCCATGGTACTCTC 60.092 50.000 14.67 9.99 38.95 3.20
2348 8889 1.771565 CCATGGTACTCTCGGGTGTA 58.228 55.000 2.57 0.00 0.00 2.90
2349 8890 2.317040 CCATGGTACTCTCGGGTGTAT 58.683 52.381 2.57 0.00 0.00 2.29
2358 8899 6.881065 GGTACTCTCGGGTGTATGTACATATA 59.119 42.308 18.27 13.17 38.63 0.86
2361 8902 6.127703 ACTCTCGGGTGTATGTACATATATGC 60.128 42.308 18.27 6.56 38.63 3.14
2431 8973 6.152932 ACAAATTTGATCTTCTGTTGTGCT 57.847 33.333 24.64 0.00 0.00 4.40
2432 8974 6.211515 ACAAATTTGATCTTCTGTTGTGCTC 58.788 36.000 24.64 0.00 0.00 4.26
2434 8976 6.585695 AATTTGATCTTCTGTTGTGCTCAT 57.414 33.333 0.00 0.00 0.00 2.90
2436 8978 7.876936 ATTTGATCTTCTGTTGTGCTCATAT 57.123 32.000 0.00 0.00 0.00 1.78
2437 8979 8.969260 ATTTGATCTTCTGTTGTGCTCATATA 57.031 30.769 0.00 0.00 0.00 0.86
2438 8980 8.791327 TTTGATCTTCTGTTGTGCTCATATAA 57.209 30.769 0.00 0.00 0.00 0.98
2439 8981 8.791327 TTGATCTTCTGTTGTGCTCATATAAA 57.209 30.769 0.00 0.00 0.00 1.40
2440 8982 8.791327 TGATCTTCTGTTGTGCTCATATAAAA 57.209 30.769 0.00 0.00 0.00 1.52
2441 8983 8.886719 TGATCTTCTGTTGTGCTCATATAAAAG 58.113 33.333 0.00 0.00 0.00 2.27
2442 8984 8.798859 ATCTTCTGTTGTGCTCATATAAAAGT 57.201 30.769 0.00 0.00 0.00 2.66
2443 8985 8.621532 TCTTCTGTTGTGCTCATATAAAAGTT 57.378 30.769 0.00 0.00 0.00 2.66
2444 8986 9.719355 TCTTCTGTTGTGCTCATATAAAAGTTA 57.281 29.630 0.00 0.00 0.00 2.24
2447 8989 8.397906 TCTGTTGTGCTCATATAAAAGTTATGC 58.602 33.333 0.00 0.00 0.00 3.14
2448 8990 8.049655 TGTTGTGCTCATATAAAAGTTATGCA 57.950 30.769 0.00 0.00 0.00 3.96
2449 8991 8.518702 TGTTGTGCTCATATAAAAGTTATGCAA 58.481 29.630 0.00 0.00 0.00 4.08
2450 8992 9.013490 GTTGTGCTCATATAAAAGTTATGCAAG 57.987 33.333 0.00 0.00 0.00 4.01
2462 9006 6.959639 AAGTTATGCAAGAAAAGAAGTCCA 57.040 33.333 0.00 0.00 0.00 4.02
2492 9036 7.519002 ACTTCAGAAAATAAAAATCCGACGAG 58.481 34.615 0.00 0.00 0.00 4.18
2493 9037 7.386848 ACTTCAGAAAATAAAAATCCGACGAGA 59.613 33.333 0.00 0.00 0.00 4.04
2498 9042 9.394477 AGAAAATAAAAATCCGACGAGAAAAAG 57.606 29.630 0.00 0.00 0.00 2.27
2500 9044 4.561735 AAAAATCCGACGAGAAAAAGCA 57.438 36.364 0.00 0.00 0.00 3.91
2557 9102 7.206687 TCAACCAAAAATACCATGAAAGTCAC 58.793 34.615 0.00 0.00 0.00 3.67
2563 9137 8.971321 CAAAAATACCATGAAAGTCACTTCTTG 58.029 33.333 0.00 0.00 32.79 3.02
2565 9139 2.887152 ACCATGAAAGTCACTTCTTGGC 59.113 45.455 14.74 0.00 46.89 4.52
2569 9143 3.565307 TGAAAGTCACTTCTTGGCCAAT 58.435 40.909 20.85 0.00 0.00 3.16
2570 9144 3.569701 TGAAAGTCACTTCTTGGCCAATC 59.430 43.478 20.85 10.02 0.00 2.67
2571 9145 3.515602 AAGTCACTTCTTGGCCAATCT 57.484 42.857 20.85 6.26 0.00 2.40
2572 9146 4.640771 AAGTCACTTCTTGGCCAATCTA 57.359 40.909 20.85 4.80 0.00 1.98
2573 9147 4.851639 AGTCACTTCTTGGCCAATCTAT 57.148 40.909 20.85 2.33 0.00 1.98
2576 9150 5.189736 AGTCACTTCTTGGCCAATCTATACA 59.810 40.000 20.85 0.00 0.00 2.29
2577 9151 5.880332 GTCACTTCTTGGCCAATCTATACAA 59.120 40.000 20.85 2.75 0.00 2.41
2578 9152 6.543831 GTCACTTCTTGGCCAATCTATACAAT 59.456 38.462 20.85 0.00 0.00 2.71
2579 9153 7.715249 GTCACTTCTTGGCCAATCTATACAATA 59.285 37.037 20.85 0.00 0.00 1.90
2580 9154 7.715249 TCACTTCTTGGCCAATCTATACAATAC 59.285 37.037 20.85 0.00 0.00 1.89
2581 9155 7.498900 CACTTCTTGGCCAATCTATACAATACA 59.501 37.037 20.85 0.00 0.00 2.29
2582 9156 8.052748 ACTTCTTGGCCAATCTATACAATACAA 58.947 33.333 20.85 0.00 0.00 2.41
2583 9157 8.815565 TTCTTGGCCAATCTATACAATACAAA 57.184 30.769 20.85 0.00 0.00 2.83
2584 9158 8.815565 TCTTGGCCAATCTATACAATACAAAA 57.184 30.769 20.85 0.00 0.00 2.44
2585 9159 9.249053 TCTTGGCCAATCTATACAATACAAAAA 57.751 29.630 20.85 0.00 0.00 1.94
2610 9184 7.277174 AGAGTAGGACATTTTGAAAACCAAG 57.723 36.000 0.00 0.00 35.94 3.61
2611 9185 5.842907 AGTAGGACATTTTGAAAACCAAGC 58.157 37.500 0.00 0.00 35.94 4.01
2635 9209 7.285629 AGCTCCATAGAGGCCTTAATTTTAAAC 59.714 37.037 6.77 0.00 40.79 2.01
2636 9210 7.068226 GCTCCATAGAGGCCTTAATTTTAAACA 59.932 37.037 6.77 0.00 40.79 2.83
2637 9211 8.887264 TCCATAGAGGCCTTAATTTTAAACAA 57.113 30.769 6.77 0.00 37.29 2.83
2638 9212 9.487442 TCCATAGAGGCCTTAATTTTAAACAAT 57.513 29.630 6.77 0.00 37.29 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.123640 GTCGGAGGAGGAGGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
46 48 2.963854 CGTATCGCTGCCAGGCTG 60.964 66.667 14.15 14.07 0.00 4.85
47 49 4.227134 CCGTATCGCTGCCAGGCT 62.227 66.667 14.15 0.00 0.00 4.58
76 78 1.066587 GAGATCCGGGCGAGACAAG 59.933 63.158 0.00 0.00 0.00 3.16
77 79 2.423898 GGAGATCCGGGCGAGACAA 61.424 63.158 0.00 0.00 0.00 3.18
80 82 2.519541 CAGGAGATCCGGGCGAGA 60.520 66.667 0.00 0.00 42.08 4.04
81 83 4.292178 GCAGGAGATCCGGGCGAG 62.292 72.222 0.00 0.00 42.08 5.03
83 85 4.598894 CTGCAGGAGATCCGGGCG 62.599 72.222 5.57 5.53 41.83 6.13
84 86 4.247380 CCTGCAGGAGATCCGGGC 62.247 72.222 29.88 10.49 42.08 6.13
85 87 2.444706 TCCTGCAGGAGATCCGGG 60.445 66.667 32.00 3.60 39.78 5.73
94 96 0.319728 CCGGTATGAGATCCTGCAGG 59.680 60.000 27.87 27.87 0.00 4.85
95 97 0.320247 GCCGGTATGAGATCCTGCAG 60.320 60.000 6.78 6.78 34.81 4.41
96 98 1.748403 GCCGGTATGAGATCCTGCA 59.252 57.895 1.90 0.00 34.81 4.41
97 99 1.373497 CGCCGGTATGAGATCCTGC 60.373 63.158 1.90 0.00 0.00 4.85
99 101 1.528292 GAGCGCCGGTATGAGATCCT 61.528 60.000 2.29 0.00 0.00 3.24
100 102 1.080434 GAGCGCCGGTATGAGATCC 60.080 63.158 2.29 0.00 0.00 3.36
101 103 1.080434 GGAGCGCCGGTATGAGATC 60.080 63.158 2.29 0.00 0.00 2.75
116 118 3.869272 GCAATGCTCACGCCGGAG 61.869 66.667 5.05 3.72 37.97 4.63
119 121 3.142867 CTACGCAATGCTCACGCCG 62.143 63.158 2.94 0.00 34.43 6.46
120 122 0.804544 TACTACGCAATGCTCACGCC 60.805 55.000 2.94 0.00 34.43 5.68
121 123 1.190323 GATACTACGCAATGCTCACGC 59.810 52.381 2.94 0.00 0.00 5.34
122 124 2.469147 CAGATACTACGCAATGCTCACG 59.531 50.000 2.94 0.00 0.00 4.35
123 125 3.706698 TCAGATACTACGCAATGCTCAC 58.293 45.455 2.94 0.00 0.00 3.51
125 127 4.804108 AGATCAGATACTACGCAATGCTC 58.196 43.478 2.94 0.00 0.00 4.26
126 128 4.862902 AGATCAGATACTACGCAATGCT 57.137 40.909 2.94 0.00 0.00 3.79
127 129 5.694006 AGAAAGATCAGATACTACGCAATGC 59.306 40.000 0.00 0.00 0.00 3.56
128 130 6.364706 GGAGAAAGATCAGATACTACGCAATG 59.635 42.308 0.00 0.00 0.00 2.82
129 131 6.451393 GGAGAAAGATCAGATACTACGCAAT 58.549 40.000 0.00 0.00 0.00 3.56
131 133 4.023963 CGGAGAAAGATCAGATACTACGCA 60.024 45.833 0.00 0.00 0.00 5.24
132 134 4.468643 CGGAGAAAGATCAGATACTACGC 58.531 47.826 0.00 0.00 0.00 4.42
134 136 6.039493 TGTTCCGGAGAAAGATCAGATACTAC 59.961 42.308 3.34 0.00 32.58 2.73
136 138 4.956700 TGTTCCGGAGAAAGATCAGATACT 59.043 41.667 3.34 0.00 32.58 2.12
137 139 5.263968 TGTTCCGGAGAAAGATCAGATAC 57.736 43.478 3.34 0.00 32.58 2.24
139 141 4.444022 CCATGTTCCGGAGAAAGATCAGAT 60.444 45.833 3.34 0.00 32.58 2.90
140 142 3.118629 CCATGTTCCGGAGAAAGATCAGA 60.119 47.826 3.34 0.00 32.58 3.27
141 143 3.201290 CCATGTTCCGGAGAAAGATCAG 58.799 50.000 3.34 0.00 32.58 2.90
142 144 2.680805 GCCATGTTCCGGAGAAAGATCA 60.681 50.000 3.34 0.00 32.58 2.92
143 145 1.943340 GCCATGTTCCGGAGAAAGATC 59.057 52.381 3.34 0.00 32.58 2.75
144 146 1.743772 CGCCATGTTCCGGAGAAAGAT 60.744 52.381 3.34 0.00 32.58 2.40
145 147 0.391130 CGCCATGTTCCGGAGAAAGA 60.391 55.000 3.34 0.00 32.58 2.52
146 148 2.089854 CGCCATGTTCCGGAGAAAG 58.910 57.895 3.34 0.00 32.58 2.62
147 149 4.294523 CGCCATGTTCCGGAGAAA 57.705 55.556 3.34 0.00 32.58 2.52
170 172 1.005748 TGCTCTGTCCACGCTCTTG 60.006 57.895 0.00 0.00 0.00 3.02
171 173 1.005630 GTGCTCTGTCCACGCTCTT 60.006 57.895 0.00 0.00 0.00 2.85
173 175 2.433318 GGTGCTCTGTCCACGCTC 60.433 66.667 0.00 0.00 34.08 5.03
174 176 3.231889 CTGGTGCTCTGTCCACGCT 62.232 63.158 0.00 0.00 34.08 5.07
175 177 2.740055 CTGGTGCTCTGTCCACGC 60.740 66.667 0.00 0.00 34.08 5.34
176 178 1.080230 CTCTGGTGCTCTGTCCACG 60.080 63.158 0.00 0.00 34.08 4.94
177 179 1.375268 GCTCTGGTGCTCTGTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
179 181 2.125753 CGCTCTGGTGCTCTGTCC 60.126 66.667 0.00 0.00 0.00 4.02
180 182 2.125753 CCGCTCTGGTGCTCTGTC 60.126 66.667 0.00 0.00 0.00 3.51
181 183 3.699894 CCCGCTCTGGTGCTCTGT 61.700 66.667 0.00 0.00 35.15 3.41
182 184 3.368190 CTCCCGCTCTGGTGCTCTG 62.368 68.421 0.00 0.00 35.15 3.35
183 185 3.073735 CTCCCGCTCTGGTGCTCT 61.074 66.667 0.00 0.00 35.15 4.09
184 186 3.071206 TCTCCCGCTCTGGTGCTC 61.071 66.667 0.00 0.00 35.15 4.26
185 187 3.073735 CTCTCCCGCTCTGGTGCT 61.074 66.667 0.00 0.00 35.15 4.40
186 188 4.154347 CCTCTCCCGCTCTGGTGC 62.154 72.222 0.00 0.00 35.15 5.01
187 189 1.954362 CTTCCTCTCCCGCTCTGGTG 61.954 65.000 0.00 0.00 35.15 4.17
190 192 1.380515 TCCTTCCTCTCCCGCTCTG 60.381 63.158 0.00 0.00 0.00 3.35
192 194 2.131067 CCTCCTTCCTCTCCCGCTC 61.131 68.421 0.00 0.00 0.00 5.03
193 195 1.581923 TACCTCCTTCCTCTCCCGCT 61.582 60.000 0.00 0.00 0.00 5.52
194 196 1.076192 TACCTCCTTCCTCTCCCGC 60.076 63.158 0.00 0.00 0.00 6.13
196 198 2.604139 CATCTACCTCCTTCCTCTCCC 58.396 57.143 0.00 0.00 0.00 4.30
197 199 2.604139 CCATCTACCTCCTTCCTCTCC 58.396 57.143 0.00 0.00 0.00 3.71
198 200 2.604139 CCCATCTACCTCCTTCCTCTC 58.396 57.143 0.00 0.00 0.00 3.20
199 201 1.413808 GCCCATCTACCTCCTTCCTCT 60.414 57.143 0.00 0.00 0.00 3.69
200 202 1.052617 GCCCATCTACCTCCTTCCTC 58.947 60.000 0.00 0.00 0.00 3.71
201 203 0.644937 AGCCCATCTACCTCCTTCCT 59.355 55.000 0.00 0.00 0.00 3.36
202 204 1.052617 GAGCCCATCTACCTCCTTCC 58.947 60.000 0.00 0.00 0.00 3.46
204 206 1.694048 CCAGAGCCCATCTACCTCCTT 60.694 57.143 0.00 0.00 36.10 3.36
205 207 0.105246 CCAGAGCCCATCTACCTCCT 60.105 60.000 0.00 0.00 36.10 3.69
206 208 1.763546 GCCAGAGCCCATCTACCTCC 61.764 65.000 0.00 0.00 36.10 4.30
207 209 1.751563 GCCAGAGCCCATCTACCTC 59.248 63.158 0.00 0.00 36.10 3.85
209 211 2.423446 CGCCAGAGCCCATCTACC 59.577 66.667 0.00 0.00 36.10 3.18
210 212 2.423446 CCGCCAGAGCCCATCTAC 59.577 66.667 0.00 0.00 36.10 2.59
211 213 3.550431 GCCGCCAGAGCCCATCTA 61.550 66.667 0.00 0.00 36.10 1.98
219 221 4.869440 CTCTCAGCGCCGCCAGAG 62.869 72.222 19.41 19.41 34.15 3.35
228 230 3.465403 CACCTCCCCCTCTCAGCG 61.465 72.222 0.00 0.00 0.00 5.18
229 231 0.985490 ATTCACCTCCCCCTCTCAGC 60.985 60.000 0.00 0.00 0.00 4.26
231 233 0.621571 CCATTCACCTCCCCCTCTCA 60.622 60.000 0.00 0.00 0.00 3.27
232 234 1.348775 CCCATTCACCTCCCCCTCTC 61.349 65.000 0.00 0.00 0.00 3.20
234 236 3.061905 GCCCATTCACCTCCCCCTC 62.062 68.421 0.00 0.00 0.00 4.30
236 238 1.696314 TAGCCCATTCACCTCCCCC 60.696 63.158 0.00 0.00 0.00 5.40
237 239 1.709994 CCTAGCCCATTCACCTCCCC 61.710 65.000 0.00 0.00 0.00 4.81
239 241 0.988678 ACCCTAGCCCATTCACCTCC 60.989 60.000 0.00 0.00 0.00 4.30
240 242 0.919710 AACCCTAGCCCATTCACCTC 59.080 55.000 0.00 0.00 0.00 3.85
241 243 0.625849 CAACCCTAGCCCATTCACCT 59.374 55.000 0.00 0.00 0.00 4.00
243 245 1.376609 CGCAACCCTAGCCCATTCAC 61.377 60.000 0.00 0.00 0.00 3.18
244 246 1.077787 CGCAACCCTAGCCCATTCA 60.078 57.895 0.00 0.00 0.00 2.57
245 247 1.823899 CCGCAACCCTAGCCCATTC 60.824 63.158 0.00 0.00 0.00 2.67
246 248 2.275418 CCGCAACCCTAGCCCATT 59.725 61.111 0.00 0.00 0.00 3.16
247 249 3.809013 CCCGCAACCCTAGCCCAT 61.809 66.667 0.00 0.00 0.00 4.00
264 266 1.782028 CTATTTAACCTGGCCGGCGC 61.782 60.000 22.54 14.37 35.61 6.53
265 267 0.179067 TCTATTTAACCTGGCCGGCG 60.179 55.000 22.54 9.65 35.61 6.46
267 269 1.578583 CGTCTATTTAACCTGGCCGG 58.421 55.000 3.88 3.88 39.35 6.13
269 271 1.211212 ACCCGTCTATTTAACCTGGCC 59.789 52.381 0.00 0.00 0.00 5.36
270 272 2.704464 ACCCGTCTATTTAACCTGGC 57.296 50.000 0.00 0.00 0.00 4.85
271 273 3.692593 CCAAACCCGTCTATTTAACCTGG 59.307 47.826 0.00 0.00 0.00 4.45
272 274 4.329392 ACCAAACCCGTCTATTTAACCTG 58.671 43.478 0.00 0.00 0.00 4.00
273 275 4.287845 AGACCAAACCCGTCTATTTAACCT 59.712 41.667 0.00 0.00 38.82 3.50
274 276 4.582869 AGACCAAACCCGTCTATTTAACC 58.417 43.478 0.00 0.00 38.82 2.85
275 277 4.328169 CGAGACCAAACCCGTCTATTTAAC 59.672 45.833 0.00 0.00 40.67 2.01
276 278 4.497300 CGAGACCAAACCCGTCTATTTAA 58.503 43.478 0.00 0.00 40.67 1.52
278 280 2.354403 CCGAGACCAAACCCGTCTATTT 60.354 50.000 0.00 0.00 40.67 1.40
280 282 0.822164 CCGAGACCAAACCCGTCTAT 59.178 55.000 0.00 0.00 40.67 1.98
282 284 2.580601 CCCGAGACCAAACCCGTCT 61.581 63.158 0.00 0.00 43.28 4.18
283 285 2.047560 CCCGAGACCAAACCCGTC 60.048 66.667 0.00 0.00 0.00 4.79
285 287 4.323477 TGCCCGAGACCAAACCCG 62.323 66.667 0.00 0.00 0.00 5.28
286 288 2.359975 CTGCCCGAGACCAAACCC 60.360 66.667 0.00 0.00 0.00 4.11
289 291 3.621805 TCGCTGCCCGAGACCAAA 61.622 61.111 0.00 0.00 41.89 3.28
318 320 4.349871 GTGTGAACGTCGCGTGGC 62.350 66.667 5.77 0.00 39.99 5.01
319 321 3.698463 GGTGTGAACGTCGCGTGG 61.698 66.667 5.77 1.13 39.99 4.94
320 322 4.042060 CGGTGTGAACGTCGCGTG 62.042 66.667 5.77 2.22 39.99 5.34
344 346 4.180946 CGACAGACGCCTCCTCCG 62.181 72.222 0.00 0.00 34.51 4.63
345 347 3.827898 CCGACAGACGCCTCCTCC 61.828 72.222 0.00 0.00 41.07 4.30
346 348 2.750637 TCCGACAGACGCCTCCTC 60.751 66.667 0.00 0.00 41.07 3.71
347 349 3.063084 GTCCGACAGACGCCTCCT 61.063 66.667 0.00 0.00 41.07 3.69
369 371 4.772687 GGACTCGCCCGGAAACCC 62.773 72.222 0.73 0.00 0.00 4.11
388 390 4.760047 CTGGCGAAGGGTCCCACG 62.760 72.222 18.98 18.98 0.00 4.94
389 391 3.607370 GACTGGCGAAGGGTCCCAC 62.607 68.421 11.55 2.69 0.00 4.61
391 393 4.097361 GGACTGGCGAAGGGTCCC 62.097 72.222 0.00 0.00 42.45 4.46
392 394 1.684734 TAGGACTGGCGAAGGGTCC 60.685 63.158 0.00 0.00 46.94 4.46
393 395 1.255667 TGTAGGACTGGCGAAGGGTC 61.256 60.000 0.00 0.00 0.00 4.46
395 397 0.179073 CATGTAGGACTGGCGAAGGG 60.179 60.000 0.00 0.00 0.00 3.95
396 398 0.824109 TCATGTAGGACTGGCGAAGG 59.176 55.000 0.00 0.00 0.00 3.46
397 399 1.799181 CGTCATGTAGGACTGGCGAAG 60.799 57.143 0.00 0.00 42.81 3.79
400 402 1.226974 CCGTCATGTAGGACTGGCG 60.227 63.158 3.63 0.00 40.04 5.69
401 403 1.144057 CCCGTCATGTAGGACTGGC 59.856 63.158 10.11 0.00 35.76 4.85
402 404 1.144057 GCCCGTCATGTAGGACTGG 59.856 63.158 10.11 3.24 42.91 4.00
403 405 1.226974 CGCCCGTCATGTAGGACTG 60.227 63.158 10.11 0.00 35.63 3.51
404 406 3.077519 GCGCCCGTCATGTAGGACT 62.078 63.158 0.00 0.00 35.63 3.85
405 407 2.585247 GCGCCCGTCATGTAGGAC 60.585 66.667 0.00 0.00 34.42 3.85
406 408 4.201679 CGCGCCCGTCATGTAGGA 62.202 66.667 0.00 0.00 0.00 2.94
431 433 2.238847 TATGAGGCGGATATGGCGGC 62.239 60.000 0.00 0.00 39.82 6.53
432 434 0.465705 ATATGAGGCGGATATGGCGG 59.534 55.000 0.00 0.00 39.82 6.13
433 435 2.315925 AATATGAGGCGGATATGGCG 57.684 50.000 0.00 0.00 39.82 5.69
434 436 2.684881 CCAAATATGAGGCGGATATGGC 59.315 50.000 0.00 0.00 0.00 4.40
435 437 3.282021 CCCAAATATGAGGCGGATATGG 58.718 50.000 0.00 0.00 0.00 2.74
436 438 2.684881 GCCCAAATATGAGGCGGATATG 59.315 50.000 0.00 0.00 34.59 1.78
437 439 2.578021 AGCCCAAATATGAGGCGGATAT 59.422 45.455 5.52 0.00 43.56 1.63
438 440 1.985159 AGCCCAAATATGAGGCGGATA 59.015 47.619 5.52 0.00 43.56 2.59
439 441 0.773644 AGCCCAAATATGAGGCGGAT 59.226 50.000 5.52 0.00 43.56 4.18
440 442 0.179020 CAGCCCAAATATGAGGCGGA 60.179 55.000 5.47 0.00 43.56 5.54
441 443 1.174712 CCAGCCCAAATATGAGGCGG 61.175 60.000 5.52 5.08 43.56 6.13
442 444 0.179020 TCCAGCCCAAATATGAGGCG 60.179 55.000 5.52 2.17 43.56 5.52
443 445 2.299326 ATCCAGCCCAAATATGAGGC 57.701 50.000 3.28 3.28 40.91 4.70
444 446 5.183530 TCATATCCAGCCCAAATATGAGG 57.816 43.478 0.00 0.00 37.43 3.86
446 448 4.018141 CCCTCATATCCAGCCCAAATATGA 60.018 45.833 0.00 0.00 39.09 2.15
447 449 4.275810 CCCTCATATCCAGCCCAAATATG 58.724 47.826 0.00 0.00 35.58 1.78
448 450 3.270433 CCCCTCATATCCAGCCCAAATAT 59.730 47.826 0.00 0.00 0.00 1.28
449 451 2.649312 CCCCTCATATCCAGCCCAAATA 59.351 50.000 0.00 0.00 0.00 1.40
450 452 1.430464 CCCCTCATATCCAGCCCAAAT 59.570 52.381 0.00 0.00 0.00 2.32
451 453 0.852842 CCCCTCATATCCAGCCCAAA 59.147 55.000 0.00 0.00 0.00 3.28
452 454 0.328450 ACCCCTCATATCCAGCCCAA 60.328 55.000 0.00 0.00 0.00 4.12
454 456 1.763770 CACCCCTCATATCCAGCCC 59.236 63.158 0.00 0.00 0.00 5.19
455 457 1.073897 GCACCCCTCATATCCAGCC 59.926 63.158 0.00 0.00 0.00 4.85
456 458 1.073897 GGCACCCCTCATATCCAGC 59.926 63.158 0.00 0.00 0.00 4.85
457 459 1.372683 CGGCACCCCTCATATCCAG 59.627 63.158 0.00 0.00 0.00 3.86
458 460 2.146724 CCGGCACCCCTCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
459 461 2.113243 GACCGGCACCCCTCATATCC 62.113 65.000 0.00 0.00 0.00 2.59
460 462 1.371558 GACCGGCACCCCTCATATC 59.628 63.158 0.00 0.00 0.00 1.63
461 463 1.383943 TGACCGGCACCCCTCATAT 60.384 57.895 0.00 0.00 0.00 1.78
462 464 2.039787 TGACCGGCACCCCTCATA 59.960 61.111 0.00 0.00 0.00 2.15
475 477 4.394712 CAGACACCCGGGCTGACC 62.395 72.222 24.08 14.55 0.00 4.02
476 478 3.302347 CTCAGACACCCGGGCTGAC 62.302 68.421 24.08 17.83 35.09 3.51
477 479 2.997315 CTCAGACACCCGGGCTGA 60.997 66.667 24.08 23.49 37.17 4.26
478 480 4.087892 CCTCAGACACCCGGGCTG 62.088 72.222 24.08 20.35 0.00 4.85
484 486 3.192103 AAACGGGCCTCAGACACCC 62.192 63.158 0.84 0.00 40.51 4.61
485 487 1.966451 CAAACGGGCCTCAGACACC 60.966 63.158 0.84 0.00 0.00 4.16
487 489 2.429930 CCAAACGGGCCTCAGACA 59.570 61.111 0.84 0.00 0.00 3.41
504 506 0.326927 TTTTGATCCAGACGACCCCC 59.673 55.000 0.00 0.00 0.00 5.40
505 507 2.194201 TTTTTGATCCAGACGACCCC 57.806 50.000 0.00 0.00 0.00 4.95
506 508 3.506067 ACAATTTTTGATCCAGACGACCC 59.494 43.478 0.00 0.00 0.00 4.46
507 509 4.215399 TCACAATTTTTGATCCAGACGACC 59.785 41.667 0.00 0.00 0.00 4.79
508 510 5.147162 GTCACAATTTTTGATCCAGACGAC 58.853 41.667 0.00 0.00 0.00 4.34
509 511 4.215399 GGTCACAATTTTTGATCCAGACGA 59.785 41.667 0.00 0.00 0.00 4.20
510 512 4.475944 GGTCACAATTTTTGATCCAGACG 58.524 43.478 0.00 0.00 0.00 4.18
512 514 3.505680 CCGGTCACAATTTTTGATCCAGA 59.494 43.478 0.00 0.00 0.00 3.86
514 516 3.226777 ACCGGTCACAATTTTTGATCCA 58.773 40.909 0.00 0.00 0.00 3.41
515 517 3.254657 TGACCGGTCACAATTTTTGATCC 59.745 43.478 33.23 2.20 34.14 3.36
516 518 4.023193 ACTGACCGGTCACAATTTTTGATC 60.023 41.667 33.23 2.93 35.46 2.92
517 519 3.888930 ACTGACCGGTCACAATTTTTGAT 59.111 39.130 33.23 8.92 35.46 2.57
518 520 3.066064 CACTGACCGGTCACAATTTTTGA 59.934 43.478 33.23 8.50 35.46 2.69
522 524 0.951558 GCACTGACCGGTCACAATTT 59.048 50.000 33.23 12.15 35.46 1.82
523 525 0.889186 GGCACTGACCGGTCACAATT 60.889 55.000 33.23 14.69 35.46 2.32
524 526 1.302511 GGCACTGACCGGTCACAAT 60.303 57.895 33.23 18.41 35.46 2.71
525 527 2.110213 GGCACTGACCGGTCACAA 59.890 61.111 33.23 13.26 35.46 3.33
526 528 3.936203 GGGCACTGACCGGTCACA 61.936 66.667 33.23 14.74 35.46 3.58
527 529 3.883744 CTGGGCACTGACCGGTCAC 62.884 68.421 33.23 22.72 31.04 3.67
528 530 3.625897 CTGGGCACTGACCGGTCA 61.626 66.667 34.13 34.13 31.04 4.02
529 531 3.311110 TCTGGGCACTGACCGGTC 61.311 66.667 28.17 28.17 38.49 4.79
530 532 3.626924 GTCTGGGCACTGACCGGT 61.627 66.667 6.92 6.92 38.49 5.28
531 533 4.742201 CGTCTGGGCACTGACCGG 62.742 72.222 19.06 2.81 41.07 5.28
532 534 3.680786 TCGTCTGGGCACTGACCG 61.681 66.667 19.06 14.11 41.07 4.79
533 535 2.048127 GTCGTCTGGGCACTGACC 60.048 66.667 19.06 3.65 41.07 4.02
534 536 2.048127 GGTCGTCTGGGCACTGAC 60.048 66.667 15.51 15.51 40.82 3.51
536 538 4.742201 CGGGTCGTCTGGGCACTG 62.742 72.222 0.00 0.00 0.00 3.66
551 553 4.235762 CCTCATACACCCGGGCGG 62.236 72.222 24.08 16.71 37.81 6.13
552 554 4.910585 GCCTCATACACCCGGGCG 62.911 72.222 24.08 15.53 33.30 6.13
553 555 4.910585 CGCCTCATACACCCGGGC 62.911 72.222 24.08 1.08 39.43 6.13
554 556 4.235762 CCGCCTCATACACCCGGG 62.236 72.222 22.25 22.25 35.54 5.73
555 557 4.235762 CCCGCCTCATACACCCGG 62.236 72.222 0.00 0.00 38.71 5.73
557 559 1.029947 CAAACCCGCCTCATACACCC 61.030 60.000 0.00 0.00 0.00 4.61
558 560 1.029947 CCAAACCCGCCTCATACACC 61.030 60.000 0.00 0.00 0.00 4.16
559 561 1.029947 CCCAAACCCGCCTCATACAC 61.030 60.000 0.00 0.00 0.00 2.90
560 562 1.301623 CCCAAACCCGCCTCATACA 59.698 57.895 0.00 0.00 0.00 2.29
561 563 1.453197 CCCCAAACCCGCCTCATAC 60.453 63.158 0.00 0.00 0.00 2.39
562 564 3.003230 CCCCAAACCCGCCTCATA 58.997 61.111 0.00 0.00 0.00 2.15
563 565 4.759205 GCCCCAAACCCGCCTCAT 62.759 66.667 0.00 0.00 0.00 2.90
572 574 3.905437 TTAGCCGGACGCCCCAAAC 62.905 63.158 5.05 0.00 38.78 2.93
573 575 3.193469 TTTAGCCGGACGCCCCAAA 62.193 57.895 5.05 0.00 38.78 3.28
575 577 4.090588 CTTTAGCCGGACGCCCCA 62.091 66.667 5.05 0.00 38.78 4.96
576 578 3.103091 ATCTTTAGCCGGACGCCCC 62.103 63.158 5.05 0.00 38.78 5.80
578 580 2.534903 GCATCTTTAGCCGGACGCC 61.535 63.158 5.05 0.00 38.78 5.68
579 581 1.090052 AAGCATCTTTAGCCGGACGC 61.090 55.000 5.05 0.00 37.98 5.19
581 583 4.127171 TCATAAAGCATCTTTAGCCGGAC 58.873 43.478 5.05 0.00 0.00 4.79
582 584 4.415881 TCATAAAGCATCTTTAGCCGGA 57.584 40.909 5.05 0.00 0.00 5.14
583 585 4.614535 GCATCATAAAGCATCTTTAGCCGG 60.615 45.833 0.00 0.00 0.00 6.13
584 586 4.470462 GCATCATAAAGCATCTTTAGCCG 58.530 43.478 5.44 0.00 0.00 5.52
587 589 5.679734 ACCGCATCATAAAGCATCTTTAG 57.320 39.130 5.44 0.00 0.00 1.85
588 590 6.094742 TCAAACCGCATCATAAAGCATCTTTA 59.905 34.615 2.02 2.02 0.00 1.85
589 591 4.989279 AACCGCATCATAAAGCATCTTT 57.011 36.364 0.00 0.00 0.00 2.52
591 593 3.947196 TCAAACCGCATCATAAAGCATCT 59.053 39.130 0.00 0.00 0.00 2.90
592 594 4.291540 TCAAACCGCATCATAAAGCATC 57.708 40.909 0.00 0.00 0.00 3.91
593 595 4.717233 TTCAAACCGCATCATAAAGCAT 57.283 36.364 0.00 0.00 0.00 3.79
594 596 4.157472 TGATTCAAACCGCATCATAAAGCA 59.843 37.500 0.00 0.00 0.00 3.91
597 599 6.942886 GTTTGATTCAAACCGCATCATAAA 57.057 33.333 25.25 0.00 45.32 1.40
609 611 7.995289 ACTTAGATGTGTGTGTTTGATTCAAA 58.005 30.769 7.74 7.74 0.00 2.69
610 612 7.566760 ACTTAGATGTGTGTGTTTGATTCAA 57.433 32.000 0.00 0.00 0.00 2.69
611 613 7.416817 CAACTTAGATGTGTGTGTTTGATTCA 58.583 34.615 0.00 0.00 0.00 2.57
612 614 6.857964 CCAACTTAGATGTGTGTGTTTGATTC 59.142 38.462 0.00 0.00 0.00 2.52
614 616 5.827797 ACCAACTTAGATGTGTGTGTTTGAT 59.172 36.000 0.00 0.00 0.00 2.57
615 617 5.189928 ACCAACTTAGATGTGTGTGTTTGA 58.810 37.500 0.00 0.00 0.00 2.69
616 618 5.065859 TGACCAACTTAGATGTGTGTGTTTG 59.934 40.000 0.00 0.00 0.00 2.93
617 619 5.189928 TGACCAACTTAGATGTGTGTGTTT 58.810 37.500 0.00 0.00 0.00 2.83
618 620 4.776349 TGACCAACTTAGATGTGTGTGTT 58.224 39.130 0.00 0.00 0.00 3.32
619 621 4.415881 TGACCAACTTAGATGTGTGTGT 57.584 40.909 0.00 0.00 0.00 3.72
620 622 5.749596 TTTGACCAACTTAGATGTGTGTG 57.250 39.130 0.00 0.00 0.00 3.82
621 623 6.959639 AATTTGACCAACTTAGATGTGTGT 57.040 33.333 0.00 0.00 0.00 3.72
622 624 6.144402 GCAAATTTGACCAACTTAGATGTGTG 59.856 38.462 22.31 0.00 0.00 3.82
624 626 5.634859 GGCAAATTTGACCAACTTAGATGTG 59.365 40.000 22.31 0.00 0.00 3.21
627 629 7.309805 GGTTAGGCAAATTTGACCAACTTAGAT 60.310 37.037 27.23 8.25 36.67 1.98
628 630 6.015772 GGTTAGGCAAATTTGACCAACTTAGA 60.016 38.462 27.23 3.09 36.67 2.10
629 631 6.015434 AGGTTAGGCAAATTTGACCAACTTAG 60.015 38.462 27.23 0.00 36.67 2.18
630 632 5.836358 AGGTTAGGCAAATTTGACCAACTTA 59.164 36.000 27.23 9.91 36.67 2.24
631 633 4.653801 AGGTTAGGCAAATTTGACCAACTT 59.346 37.500 27.23 20.70 36.67 2.66
632 634 4.223144 AGGTTAGGCAAATTTGACCAACT 58.777 39.130 27.23 17.59 36.67 3.16
635 637 4.770010 CCTAAGGTTAGGCAAATTTGACCA 59.230 41.667 20.60 3.83 43.43 4.02
649 651 4.650972 AAGATTGCCACACCTAAGGTTA 57.349 40.909 0.00 0.00 31.02 2.85
650 652 3.525800 AAGATTGCCACACCTAAGGTT 57.474 42.857 0.00 0.00 31.02 3.50
651 653 3.622455 GCTAAGATTGCCACACCTAAGGT 60.622 47.826 0.00 0.00 35.62 3.50
663 665 5.643777 TGAGACTAAGTTTGGCTAAGATTGC 59.356 40.000 0.00 0.00 0.00 3.56
665 667 7.175119 GGTTTGAGACTAAGTTTGGCTAAGATT 59.825 37.037 0.00 0.00 0.00 2.40
666 668 6.655425 GGTTTGAGACTAAGTTTGGCTAAGAT 59.345 38.462 0.00 0.00 0.00 2.40
667 669 5.995897 GGTTTGAGACTAAGTTTGGCTAAGA 59.004 40.000 0.00 0.00 0.00 2.10
668 670 5.763204 TGGTTTGAGACTAAGTTTGGCTAAG 59.237 40.000 0.00 0.00 0.00 2.18
669 671 5.686753 TGGTTTGAGACTAAGTTTGGCTAA 58.313 37.500 0.00 0.00 0.00 3.09
670 672 5.298989 TGGTTTGAGACTAAGTTTGGCTA 57.701 39.130 0.00 0.00 0.00 3.93
672 674 4.911514 TTGGTTTGAGACTAAGTTTGGC 57.088 40.909 0.00 0.00 0.00 4.52
673 675 5.126384 TGGTTTGGTTTGAGACTAAGTTTGG 59.874 40.000 0.00 0.00 29.89 3.28
676 678 7.230712 CCTATTGGTTTGGTTTGAGACTAAGTT 59.769 37.037 0.00 0.00 29.89 2.66
677 679 6.715264 CCTATTGGTTTGGTTTGAGACTAAGT 59.285 38.462 0.00 0.00 29.89 2.24
678 680 6.715264 ACCTATTGGTTTGGTTTGAGACTAAG 59.285 38.462 0.00 0.00 46.05 2.18
679 681 6.607019 ACCTATTGGTTTGGTTTGAGACTAA 58.393 36.000 0.00 0.00 46.05 2.24
680 682 6.195600 ACCTATTGGTTTGGTTTGAGACTA 57.804 37.500 0.00 0.00 46.05 2.59
681 683 5.061721 ACCTATTGGTTTGGTTTGAGACT 57.938 39.130 0.00 0.00 46.05 3.24
702 704 3.368427 GGGGCAAAGGCTTTTATTCAGAC 60.368 47.826 10.36 0.00 40.87 3.51
931 3655 2.619074 GGGTCTGGAAGGTGATGGAAAG 60.619 54.545 0.00 0.00 0.00 2.62
963 3693 3.642377 GAGGAGGGAGTTTATGTAGGTCC 59.358 52.174 0.00 0.00 0.00 4.46
1602 7886 1.006102 AAACTCGCTCCCACTCACG 60.006 57.895 0.00 0.00 0.00 4.35
1647 7952 5.871524 TCTAGCAGATGAGATCAAAACACAC 59.128 40.000 0.00 0.00 0.00 3.82
1648 7953 6.041423 TCTAGCAGATGAGATCAAAACACA 57.959 37.500 0.00 0.00 0.00 3.72
1649 7954 6.336566 TCTCTAGCAGATGAGATCAAAACAC 58.663 40.000 0.00 0.00 34.77 3.32
1650 7955 6.154192 ACTCTCTAGCAGATGAGATCAAAACA 59.846 38.462 0.00 0.00 38.46 2.83
1651 7956 6.476380 CACTCTCTAGCAGATGAGATCAAAAC 59.524 42.308 0.00 0.00 38.46 2.43
1987 8488 0.850100 TCTCCCCAAAAGGCAGACAA 59.150 50.000 0.00 0.00 0.00 3.18
2003 8504 6.765915 ACTGGAATTTGCCTTTTCTATCTC 57.234 37.500 0.00 0.00 0.00 2.75
2014 8515 6.515272 TCTCAATTCTTACTGGAATTTGCC 57.485 37.500 0.00 0.00 42.02 4.52
2232 8771 7.426410 TCATGGCTGTTTTATTTTTCGTTGTA 58.574 30.769 0.00 0.00 0.00 2.41
2248 8787 0.612732 CCCCACACAATCATGGCTGT 60.613 55.000 0.00 0.00 34.37 4.40
2340 8881 4.701171 TCGCATATATGTACATACACCCGA 59.299 41.667 17.69 18.23 39.30 5.14
2341 8882 4.989044 TCGCATATATGTACATACACCCG 58.011 43.478 17.69 16.54 39.30 5.28
2348 8889 9.719355 TTGGAATTACTTCGCATATATGTACAT 57.281 29.630 13.93 13.93 31.75 2.29
2349 8890 9.549078 TTTGGAATTACTTCGCATATATGTACA 57.451 29.630 14.14 0.00 31.75 2.90
2418 8960 8.621532 AACTTTTATATGAGCACAACAGAAGA 57.378 30.769 0.00 0.00 0.00 2.87
2427 8969 9.787532 TTTCTTGCATAACTTTTATATGAGCAC 57.212 29.630 0.00 0.00 33.49 4.40
2436 8978 8.908903 TGGACTTCTTTTCTTGCATAACTTTTA 58.091 29.630 0.00 0.00 0.00 1.52
2437 8979 7.781056 TGGACTTCTTTTCTTGCATAACTTTT 58.219 30.769 0.00 0.00 0.00 2.27
2438 8980 7.068716 ACTGGACTTCTTTTCTTGCATAACTTT 59.931 33.333 0.00 0.00 0.00 2.66
2439 8981 6.547510 ACTGGACTTCTTTTCTTGCATAACTT 59.452 34.615 0.00 0.00 0.00 2.66
2440 8982 6.064717 ACTGGACTTCTTTTCTTGCATAACT 58.935 36.000 0.00 0.00 0.00 2.24
2441 8983 6.319141 ACTGGACTTCTTTTCTTGCATAAC 57.681 37.500 0.00 0.00 0.00 1.89
2442 8984 5.179368 CGACTGGACTTCTTTTCTTGCATAA 59.821 40.000 0.00 0.00 0.00 1.90
2443 8985 4.690748 CGACTGGACTTCTTTTCTTGCATA 59.309 41.667 0.00 0.00 0.00 3.14
2444 8986 3.499918 CGACTGGACTTCTTTTCTTGCAT 59.500 43.478 0.00 0.00 0.00 3.96
2445 8987 2.872245 CGACTGGACTTCTTTTCTTGCA 59.128 45.455 0.00 0.00 0.00 4.08
2446 8988 3.059529 GTCGACTGGACTTCTTTTCTTGC 60.060 47.826 8.70 0.00 42.62 4.01
2447 8989 4.717188 GTCGACTGGACTTCTTTTCTTG 57.283 45.455 8.70 0.00 42.62 3.02
2462 9006 7.386848 TCGGATTTTTATTTTCTGAAGTCGACT 59.613 33.333 13.58 13.58 0.00 4.18
2472 9016 9.394477 CTTTTTCTCGTCGGATTTTTATTTTCT 57.606 29.630 0.00 0.00 0.00 2.52
2533 9078 7.209475 AGTGACTTTCATGGTATTTTTGGTTG 58.791 34.615 0.00 0.00 0.00 3.77
2534 9079 7.360113 AGTGACTTTCATGGTATTTTTGGTT 57.640 32.000 0.00 0.00 0.00 3.67
2547 9092 3.228188 TGGCCAAGAAGTGACTTTCAT 57.772 42.857 0.61 0.00 0.00 2.57
2557 9102 8.450578 TTGTATTGTATAGATTGGCCAAGAAG 57.549 34.615 24.94 0.00 0.00 2.85
2582 9156 8.536175 TGGTTTTCAAAATGTCCTACTCTTTTT 58.464 29.630 0.00 0.00 0.00 1.94
2583 9157 8.073467 TGGTTTTCAAAATGTCCTACTCTTTT 57.927 30.769 0.00 0.00 0.00 2.27
2584 9158 7.654022 TGGTTTTCAAAATGTCCTACTCTTT 57.346 32.000 0.00 0.00 0.00 2.52
2585 9159 7.654022 TTGGTTTTCAAAATGTCCTACTCTT 57.346 32.000 0.00 0.00 31.46 2.85
2602 9176 2.621668 GGCCTCTATGGAGCTTGGTTTT 60.622 50.000 0.00 0.00 38.21 2.43
2604 9178 0.548510 GGCCTCTATGGAGCTTGGTT 59.451 55.000 0.00 0.00 38.21 3.67
2610 9184 7.068226 TGTTTAAAATTAAGGCCTCTATGGAGC 59.932 37.037 5.23 0.00 38.21 4.70
2611 9185 8.519799 TGTTTAAAATTAAGGCCTCTATGGAG 57.480 34.615 5.23 0.00 38.35 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.