Multiple sequence alignment - TraesCS3D01G114100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G114100 chr3D 100.000 4688 0 0 1 4688 67709273 67713960 0.000000e+00 8658.0
1 TraesCS3D01G114100 chr3D 98.954 478 4 1 1 478 209956624 209957100 0.000000e+00 854.0
2 TraesCS3D01G114100 chr3D 98.750 480 4 2 1 480 67701178 67701655 0.000000e+00 852.0
3 TraesCS3D01G114100 chr3D 95.726 117 5 0 2243 2359 279902325 279902209 6.190000e-44 189.0
4 TraesCS3D01G114100 chr3D 88.333 60 7 0 547 606 421651435 421651376 6.510000e-09 73.1
5 TraesCS3D01G114100 chr3A 95.622 2307 84 10 2357 4657 79401496 79403791 0.000000e+00 3685.0
6 TraesCS3D01G114100 chr3A 91.182 1168 50 21 481 1618 79399774 79400918 0.000000e+00 1537.0
7 TraesCS3D01G114100 chr3A 90.893 560 28 9 1666 2221 79400919 79401459 0.000000e+00 730.0
8 TraesCS3D01G114100 chr3A 78.426 394 42 14 2762 3153 585936700 585936348 2.840000e-52 217.0
9 TraesCS3D01G114100 chr3B 92.284 1646 83 21 2357 3973 114144857 114143227 0.000000e+00 2296.0
10 TraesCS3D01G114100 chr3B 88.042 1823 129 40 485 2246 114146648 114144854 0.000000e+00 2076.0
11 TraesCS3D01G114100 chr3B 94.176 704 33 3 3944 4647 114143226 114142531 0.000000e+00 1066.0
12 TraesCS3D01G114100 chr3B 95.000 120 6 0 2243 2362 712657693 712657574 6.190000e-44 189.0
13 TraesCS3D01G114100 chr2B 88.914 1326 79 21 2395 3679 113326863 113325565 0.000000e+00 1572.0
14 TraesCS3D01G114100 chr2B 91.516 884 55 12 1150 2025 113327967 113327096 0.000000e+00 1199.0
15 TraesCS3D01G114100 chr2B 94.309 123 7 0 2240 2362 87701491 87701613 6.190000e-44 189.0
16 TraesCS3D01G114100 chr2D 88.662 1323 83 23 2395 3675 74280488 74279191 0.000000e+00 1550.0
17 TraesCS3D01G114100 chr2D 90.677 901 55 16 1134 2025 74281995 74281115 0.000000e+00 1171.0
18 TraesCS3D01G114100 chr2D 97.727 484 7 1 1 480 66701397 66700914 0.000000e+00 830.0
19 TraesCS3D01G114100 chr2D 95.122 123 6 0 2240 2362 122581008 122581130 1.330000e-45 195.0
20 TraesCS3D01G114100 chr2D 96.552 116 4 0 2243 2358 121001006 121000891 4.790000e-45 193.0
21 TraesCS3D01G114100 chr2A 91.343 901 51 17 1134 2025 73557078 73556196 0.000000e+00 1206.0
22 TraesCS3D01G114100 chr2A 83.763 893 72 25 3042 3880 73555067 73554194 0.000000e+00 778.0
23 TraesCS3D01G114100 chr2A 93.515 478 29 2 2395 2870 73555702 73555225 0.000000e+00 710.0
24 TraesCS3D01G114100 chr2A 79.804 713 76 35 2632 3321 383426662 383425995 1.540000e-124 457.0
25 TraesCS3D01G114100 chr1D 98.960 481 4 1 1 480 371169531 371169051 0.000000e+00 859.0
26 TraesCS3D01G114100 chr1D 98.545 481 6 1 1 480 371161370 371160890 0.000000e+00 848.0
27 TraesCS3D01G114100 chr1D 76.603 842 106 42 2506 3321 463676971 463676195 3.420000e-101 379.0
28 TraesCS3D01G114100 chr1D 100.000 32 0 0 506 537 35928353 35928384 5.070000e-05 60.2
29 TraesCS3D01G114100 chr4D 98.129 481 9 0 1 481 99690037 99689557 0.000000e+00 839.0
30 TraesCS3D01G114100 chr4D 97.708 480 11 0 1 480 30040210 30040689 0.000000e+00 826.0
31 TraesCS3D01G114100 chr4D 97.320 485 8 1 1 480 30032021 30032505 0.000000e+00 819.0
32 TraesCS3D01G114100 chr7D 97.718 482 8 3 1 480 434249535 434249055 0.000000e+00 826.0
33 TraesCS3D01G114100 chr6B 79.853 814 105 36 2506 3298 116891589 116892364 1.480000e-149 540.0
34 TraesCS3D01G114100 chr6B 78.675 830 112 40 2506 3298 28008629 28009430 4.210000e-135 492.0
35 TraesCS3D01G114100 chr7A 79.326 653 75 22 2506 3153 35157796 35157199 2.030000e-108 403.0
36 TraesCS3D01G114100 chr7A 78.195 399 51 19 2759 3153 649009221 649008855 6.110000e-54 222.0
37 TraesCS3D01G114100 chr5A 78.195 399 52 18 2759 3153 646632105 646631738 6.110000e-54 222.0
38 TraesCS3D01G114100 chr5A 92.857 126 9 0 2242 2367 611023302 611023177 2.880000e-42 183.0
39 TraesCS3D01G114100 chr5A 93.548 62 2 2 545 606 6676431 6676490 1.800000e-14 91.6
40 TraesCS3D01G114100 chr5A 91.935 62 3 2 545 606 6676501 6676442 8.360000e-13 86.1
41 TraesCS3D01G114100 chr5A 90.244 41 2 2 495 533 596025473 596025513 8.000000e-03 52.8
42 TraesCS3D01G114100 chr5D 95.000 120 6 0 2243 2362 138565556 138565675 6.190000e-44 189.0
43 TraesCS3D01G114100 chr5D 94.262 122 6 1 2239 2359 270254023 270254144 8.010000e-43 185.0
44 TraesCS3D01G114100 chr5D 91.935 62 5 0 545 606 8497433 8497372 2.320000e-13 87.9
45 TraesCS3D01G114100 chrUn 93.701 127 4 4 2243 2367 421899643 421899519 2.230000e-43 187.0
46 TraesCS3D01G114100 chr4A 74.167 600 75 48 2756 3319 151642121 151642676 4.820000e-40 176.0
47 TraesCS3D01G114100 chr4A 88.732 71 6 1 536 606 699895941 699896009 8.360000e-13 86.1
48 TraesCS3D01G114100 chr6A 86.765 68 5 1 539 606 431145380 431145443 6.510000e-09 73.1
49 TraesCS3D01G114100 chr6A 85.455 55 8 0 538 592 498585044 498585098 1.820000e-04 58.4
50 TraesCS3D01G114100 chr7B 85.294 68 7 2 539 604 690912113 690912179 3.030000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G114100 chr3D 67709273 67713960 4687 False 8658.000000 8658 100.000000 1 4688 1 chr3D.!!$F2 4687
1 TraesCS3D01G114100 chr3A 79399774 79403791 4017 False 1984.000000 3685 92.565667 481 4657 3 chr3A.!!$F1 4176
2 TraesCS3D01G114100 chr3B 114142531 114146648 4117 True 1812.666667 2296 91.500667 485 4647 3 chr3B.!!$R2 4162
3 TraesCS3D01G114100 chr2B 113325565 113327967 2402 True 1385.500000 1572 90.215000 1150 3679 2 chr2B.!!$R1 2529
4 TraesCS3D01G114100 chr2D 74279191 74281995 2804 True 1360.500000 1550 89.669500 1134 3675 2 chr2D.!!$R3 2541
5 TraesCS3D01G114100 chr2A 73554194 73557078 2884 True 898.000000 1206 89.540333 1134 3880 3 chr2A.!!$R2 2746
6 TraesCS3D01G114100 chr2A 383425995 383426662 667 True 457.000000 457 79.804000 2632 3321 1 chr2A.!!$R1 689
7 TraesCS3D01G114100 chr1D 463676195 463676971 776 True 379.000000 379 76.603000 2506 3321 1 chr1D.!!$R3 815
8 TraesCS3D01G114100 chr6B 116891589 116892364 775 False 540.000000 540 79.853000 2506 3298 1 chr6B.!!$F2 792
9 TraesCS3D01G114100 chr6B 28008629 28009430 801 False 492.000000 492 78.675000 2506 3298 1 chr6B.!!$F1 792
10 TraesCS3D01G114100 chr7A 35157199 35157796 597 True 403.000000 403 79.326000 2506 3153 1 chr7A.!!$R1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 481 0.104120 TGATTATCCGGGCGTCACAG 59.896 55.0 0.00 0.0 0.00 3.66 F
2261 2712 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.0 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2330 2781 0.384669 CCGTCCGGAGATACTTGTCC 59.615 60.0 3.06 0.0 37.5 4.02 R
4165 4831 0.250295 TTGCAGAAGGAGTTGACGGG 60.250 55.0 0.00 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.838244 GGGGGTTTCTTTTCTTTTGCT 57.162 42.857 0.00 0.00 0.00 3.91
38 39 4.150897 GGGGGTTTCTTTTCTTTTGCTT 57.849 40.909 0.00 0.00 0.00 3.91
39 40 4.523083 GGGGGTTTCTTTTCTTTTGCTTT 58.477 39.130 0.00 0.00 0.00 3.51
40 41 4.574828 GGGGGTTTCTTTTCTTTTGCTTTC 59.425 41.667 0.00 0.00 0.00 2.62
41 42 5.428253 GGGGTTTCTTTTCTTTTGCTTTCT 58.572 37.500 0.00 0.00 0.00 2.52
42 43 5.880332 GGGGTTTCTTTTCTTTTGCTTTCTT 59.120 36.000 0.00 0.00 0.00 2.52
43 44 6.374333 GGGGTTTCTTTTCTTTTGCTTTCTTT 59.626 34.615 0.00 0.00 0.00 2.52
44 45 7.094377 GGGGTTTCTTTTCTTTTGCTTTCTTTT 60.094 33.333 0.00 0.00 0.00 2.27
45 46 8.296713 GGGTTTCTTTTCTTTTGCTTTCTTTTT 58.703 29.630 0.00 0.00 0.00 1.94
121 122 7.195839 TGTTTTAGCAAAATACCAAAATGGC 57.804 32.000 0.00 0.00 35.15 4.40
122 123 6.767902 TGTTTTAGCAAAATACCAAAATGGCA 59.232 30.769 0.00 0.00 35.15 4.92
123 124 6.793492 TTTAGCAAAATACCAAAATGGCAC 57.207 33.333 0.00 0.00 42.67 5.01
124 125 3.673902 AGCAAAATACCAAAATGGCACC 58.326 40.909 0.00 0.00 42.67 5.01
125 126 3.327464 AGCAAAATACCAAAATGGCACCT 59.673 39.130 0.00 0.00 42.67 4.00
126 127 4.530161 AGCAAAATACCAAAATGGCACCTA 59.470 37.500 0.00 0.00 42.67 3.08
127 128 5.012561 AGCAAAATACCAAAATGGCACCTAA 59.987 36.000 0.00 0.00 42.67 2.69
128 129 5.879777 GCAAAATACCAAAATGGCACCTAAT 59.120 36.000 0.00 0.00 42.67 1.73
129 130 6.374053 GCAAAATACCAAAATGGCACCTAATT 59.626 34.615 0.00 0.00 42.67 1.40
130 131 7.094420 GCAAAATACCAAAATGGCACCTAATTT 60.094 33.333 0.00 0.00 42.67 1.82
131 132 7.920160 AAATACCAAAATGGCACCTAATTTG 57.080 32.000 0.00 0.00 42.67 2.32
132 133 4.972751 ACCAAAATGGCACCTAATTTGT 57.027 36.364 0.00 0.00 42.67 2.83
133 134 5.303259 ACCAAAATGGCACCTAATTTGTT 57.697 34.783 0.00 0.00 42.67 2.83
134 135 5.062528 ACCAAAATGGCACCTAATTTGTTG 58.937 37.500 0.00 0.00 42.67 3.33
135 136 5.062528 CCAAAATGGCACCTAATTTGTTGT 58.937 37.500 0.00 0.00 30.89 3.32
136 137 5.530543 CCAAAATGGCACCTAATTTGTTGTT 59.469 36.000 0.00 0.00 30.89 2.83
137 138 6.708054 CCAAAATGGCACCTAATTTGTTGTTA 59.292 34.615 0.00 0.00 30.89 2.41
138 139 7.307692 CCAAAATGGCACCTAATTTGTTGTTAC 60.308 37.037 0.00 0.00 30.89 2.50
139 140 4.857509 TGGCACCTAATTTGTTGTTACC 57.142 40.909 0.00 0.00 0.00 2.85
140 141 4.215908 TGGCACCTAATTTGTTGTTACCA 58.784 39.130 0.00 0.00 0.00 3.25
141 142 4.649674 TGGCACCTAATTTGTTGTTACCAA 59.350 37.500 0.00 0.00 0.00 3.67
142 143 5.128827 TGGCACCTAATTTGTTGTTACCAAA 59.871 36.000 0.00 0.00 36.34 3.28
143 144 6.183361 TGGCACCTAATTTGTTGTTACCAAAT 60.183 34.615 0.00 0.00 42.68 2.32
144 145 7.015292 TGGCACCTAATTTGTTGTTACCAAATA 59.985 33.333 0.00 0.00 40.62 1.40
145 146 8.038351 GGCACCTAATTTGTTGTTACCAAATAT 58.962 33.333 0.00 0.00 40.62 1.28
146 147 8.868916 GCACCTAATTTGTTGTTACCAAATATG 58.131 33.333 0.00 0.00 40.62 1.78
147 148 8.868916 CACCTAATTTGTTGTTACCAAATATGC 58.131 33.333 0.00 0.00 40.62 3.14
148 149 8.038351 ACCTAATTTGTTGTTACCAAATATGCC 58.962 33.333 0.00 0.00 40.62 4.40
149 150 8.037758 CCTAATTTGTTGTTACCAAATATGCCA 58.962 33.333 0.00 0.00 40.62 4.92
150 151 7.665561 AATTTGTTGTTACCAAATATGCCAC 57.334 32.000 0.00 0.00 40.62 5.01
151 152 4.427096 TGTTGTTACCAAATATGCCACG 57.573 40.909 0.00 0.00 30.94 4.94
152 153 3.191581 TGTTGTTACCAAATATGCCACGG 59.808 43.478 0.00 0.00 30.94 4.94
153 154 1.746220 TGTTACCAAATATGCCACGGC 59.254 47.619 0.00 0.00 42.35 5.68
154 155 1.066454 GTTACCAAATATGCCACGGCC 59.934 52.381 5.42 0.00 41.09 6.13
155 156 0.256177 TACCAAATATGCCACGGCCA 59.744 50.000 2.24 0.00 41.09 5.36
156 157 1.319614 ACCAAATATGCCACGGCCAC 61.320 55.000 2.24 0.00 41.09 5.01
157 158 1.318886 CCAAATATGCCACGGCCACA 61.319 55.000 2.24 0.00 41.09 4.17
158 159 0.746063 CAAATATGCCACGGCCACAT 59.254 50.000 2.24 2.98 41.09 3.21
159 160 1.136695 CAAATATGCCACGGCCACATT 59.863 47.619 2.24 0.00 41.09 2.71
160 161 2.356665 AATATGCCACGGCCACATTA 57.643 45.000 2.24 0.00 41.09 1.90
161 162 2.356665 ATATGCCACGGCCACATTAA 57.643 45.000 2.24 0.00 41.09 1.40
162 163 1.384525 TATGCCACGGCCACATTAAC 58.615 50.000 2.24 0.00 41.09 2.01
163 164 0.323360 ATGCCACGGCCACATTAACT 60.323 50.000 2.24 0.00 41.09 2.24
164 165 0.538516 TGCCACGGCCACATTAACTT 60.539 50.000 2.24 0.00 41.09 2.66
165 166 0.109319 GCCACGGCCACATTAACTTG 60.109 55.000 2.24 0.00 34.56 3.16
166 167 0.109319 CCACGGCCACATTAACTTGC 60.109 55.000 2.24 0.00 0.00 4.01
167 168 0.881118 CACGGCCACATTAACTTGCT 59.119 50.000 2.24 0.00 0.00 3.91
168 169 2.080693 CACGGCCACATTAACTTGCTA 58.919 47.619 2.24 0.00 0.00 3.49
169 170 2.081462 ACGGCCACATTAACTTGCTAC 58.919 47.619 2.24 0.00 0.00 3.58
170 171 1.400494 CGGCCACATTAACTTGCTACC 59.600 52.381 2.24 0.00 0.00 3.18
171 172 1.749063 GGCCACATTAACTTGCTACCC 59.251 52.381 0.00 0.00 0.00 3.69
172 173 2.442413 GCCACATTAACTTGCTACCCA 58.558 47.619 0.00 0.00 0.00 4.51
173 174 2.823154 GCCACATTAACTTGCTACCCAA 59.177 45.455 0.00 0.00 0.00 4.12
174 175 3.257127 GCCACATTAACTTGCTACCCAAA 59.743 43.478 0.00 0.00 31.94 3.28
175 176 4.805219 CCACATTAACTTGCTACCCAAAC 58.195 43.478 0.00 0.00 31.94 2.93
176 177 4.522789 CCACATTAACTTGCTACCCAAACT 59.477 41.667 0.00 0.00 31.94 2.66
177 178 5.708230 CCACATTAACTTGCTACCCAAACTA 59.292 40.000 0.00 0.00 31.94 2.24
178 179 6.207810 CCACATTAACTTGCTACCCAAACTAA 59.792 38.462 0.00 0.00 31.94 2.24
179 180 7.255660 CCACATTAACTTGCTACCCAAACTAAA 60.256 37.037 0.00 0.00 31.94 1.85
180 181 8.138712 CACATTAACTTGCTACCCAAACTAAAA 58.861 33.333 0.00 0.00 31.94 1.52
181 182 8.866093 ACATTAACTTGCTACCCAAACTAAAAT 58.134 29.630 0.00 0.00 31.94 1.82
184 185 9.577222 TTAACTTGCTACCCAAACTAAAATAGT 57.423 29.630 0.00 0.00 41.73 2.12
244 245 8.893563 AATAGTTTTCCCTGATGTTTTATCCA 57.106 30.769 0.00 0.00 0.00 3.41
245 246 9.492730 AATAGTTTTCCCTGATGTTTTATCCAT 57.507 29.630 0.00 0.00 0.00 3.41
246 247 7.410120 AGTTTTCCCTGATGTTTTATCCATC 57.590 36.000 0.00 0.00 39.32 3.51
247 248 7.184862 AGTTTTCCCTGATGTTTTATCCATCT 58.815 34.615 0.00 0.00 39.54 2.90
248 249 8.336235 AGTTTTCCCTGATGTTTTATCCATCTA 58.664 33.333 0.00 0.00 39.54 1.98
249 250 8.966868 GTTTTCCCTGATGTTTTATCCATCTAA 58.033 33.333 0.00 0.00 39.54 2.10
250 251 9.713684 TTTTCCCTGATGTTTTATCCATCTAAT 57.286 29.630 0.00 0.00 39.54 1.73
253 254 9.170890 TCCCTGATGTTTTATCCATCTAATAGT 57.829 33.333 0.00 0.00 39.54 2.12
290 291 3.328535 AAGGTTTGGTTTCTCCACCAT 57.671 42.857 0.00 0.00 46.60 3.55
291 292 4.463050 AAGGTTTGGTTTCTCCACCATA 57.537 40.909 0.00 0.00 46.60 2.74
292 293 4.463050 AGGTTTGGTTTCTCCACCATAA 57.537 40.909 0.00 0.00 46.60 1.90
293 294 5.010708 AGGTTTGGTTTCTCCACCATAAT 57.989 39.130 0.00 0.00 46.60 1.28
294 295 5.402630 AGGTTTGGTTTCTCCACCATAATT 58.597 37.500 0.00 0.00 46.60 1.40
295 296 5.245977 AGGTTTGGTTTCTCCACCATAATTG 59.754 40.000 0.00 0.00 46.60 2.32
296 297 4.799564 TTGGTTTCTCCACCATAATTGC 57.200 40.909 0.00 0.00 46.60 3.56
297 298 3.096092 TGGTTTCTCCACCATAATTGCC 58.904 45.455 0.00 0.00 42.27 4.52
298 299 3.245586 TGGTTTCTCCACCATAATTGCCT 60.246 43.478 0.00 0.00 42.27 4.75
299 300 4.017958 TGGTTTCTCCACCATAATTGCCTA 60.018 41.667 0.00 0.00 42.27 3.93
300 301 5.140454 GGTTTCTCCACCATAATTGCCTAT 58.860 41.667 0.00 0.00 36.73 2.57
301 302 5.010012 GGTTTCTCCACCATAATTGCCTATG 59.990 44.000 0.00 0.00 36.73 2.23
302 303 3.754965 TCTCCACCATAATTGCCTATGC 58.245 45.455 0.00 0.00 38.26 3.14
316 317 5.929058 TGCCTATGCATTATTTGGTTCAA 57.071 34.783 3.54 0.00 44.23 2.69
317 318 6.482898 TGCCTATGCATTATTTGGTTCAAT 57.517 33.333 3.54 0.00 44.23 2.57
318 319 6.514947 TGCCTATGCATTATTTGGTTCAATC 58.485 36.000 3.54 0.00 44.23 2.67
319 320 5.928264 GCCTATGCATTATTTGGTTCAATCC 59.072 40.000 3.54 0.00 37.47 3.01
320 321 6.151691 CCTATGCATTATTTGGTTCAATCCG 58.848 40.000 3.54 0.00 0.00 4.18
321 322 5.850557 ATGCATTATTTGGTTCAATCCGA 57.149 34.783 0.00 0.00 0.00 4.55
322 323 5.651387 TGCATTATTTGGTTCAATCCGAA 57.349 34.783 0.00 0.00 35.60 4.30
403 404 8.950403 AATTTGAATCAGTTTCTAACTAACGC 57.050 30.769 0.00 0.00 40.46 4.84
404 405 5.756950 TGAATCAGTTTCTAACTAACGCG 57.243 39.130 3.53 3.53 40.46 6.01
405 406 5.463286 TGAATCAGTTTCTAACTAACGCGA 58.537 37.500 15.93 0.00 40.46 5.87
406 407 5.571741 TGAATCAGTTTCTAACTAACGCGAG 59.428 40.000 15.93 2.26 40.46 5.03
407 408 4.754372 TCAGTTTCTAACTAACGCGAGA 57.246 40.909 15.93 0.00 40.46 4.04
408 409 5.306532 TCAGTTTCTAACTAACGCGAGAT 57.693 39.130 15.93 0.00 40.46 2.75
409 410 5.706916 TCAGTTTCTAACTAACGCGAGATT 58.293 37.500 15.93 0.00 40.46 2.40
410 411 6.845302 TCAGTTTCTAACTAACGCGAGATTA 58.155 36.000 15.93 0.00 40.46 1.75
411 412 6.965500 TCAGTTTCTAACTAACGCGAGATTAG 59.035 38.462 15.93 13.42 40.46 1.73
412 413 5.742926 AGTTTCTAACTAACGCGAGATTAGC 59.257 40.000 15.93 3.19 40.69 3.09
413 414 4.888038 TCTAACTAACGCGAGATTAGCA 57.112 40.909 15.93 1.59 33.66 3.49
414 415 5.239359 TCTAACTAACGCGAGATTAGCAA 57.761 39.130 15.93 1.60 33.66 3.91
415 416 5.828747 TCTAACTAACGCGAGATTAGCAAT 58.171 37.500 15.93 3.68 33.66 3.56
416 417 6.962686 TCTAACTAACGCGAGATTAGCAATA 58.037 36.000 15.93 4.63 33.66 1.90
417 418 7.076362 TCTAACTAACGCGAGATTAGCAATAG 58.924 38.462 15.93 13.19 33.66 1.73
418 419 5.184340 ACTAACGCGAGATTAGCAATAGT 57.816 39.130 15.93 2.50 33.66 2.12
419 420 6.309712 ACTAACGCGAGATTAGCAATAGTA 57.690 37.500 15.93 0.00 35.38 1.82
420 421 6.732154 ACTAACGCGAGATTAGCAATAGTAA 58.268 36.000 15.93 0.00 35.38 2.24
421 422 7.368833 ACTAACGCGAGATTAGCAATAGTAAT 58.631 34.615 15.93 0.00 35.38 1.89
422 423 7.866393 ACTAACGCGAGATTAGCAATAGTAATT 59.134 33.333 15.93 0.00 35.38 1.40
423 424 6.453643 ACGCGAGATTAGCAATAGTAATTG 57.546 37.500 15.93 0.00 44.53 2.32
424 425 6.213677 ACGCGAGATTAGCAATAGTAATTGA 58.786 36.000 15.93 0.00 44.50 2.57
425 426 6.363626 ACGCGAGATTAGCAATAGTAATTGAG 59.636 38.462 15.93 0.00 44.50 3.02
426 427 6.183360 CGCGAGATTAGCAATAGTAATTGAGG 60.183 42.308 0.00 0.00 44.50 3.86
427 428 6.647067 GCGAGATTAGCAATAGTAATTGAGGT 59.353 38.462 2.38 0.00 44.50 3.85
428 429 7.359598 GCGAGATTAGCAATAGTAATTGAGGTG 60.360 40.741 2.38 0.00 44.50 4.00
429 430 7.867909 CGAGATTAGCAATAGTAATTGAGGTGA 59.132 37.037 2.38 0.00 44.50 4.02
430 431 8.894768 AGATTAGCAATAGTAATTGAGGTGAC 57.105 34.615 2.38 0.00 44.50 3.67
431 432 7.653713 AGATTAGCAATAGTAATTGAGGTGACG 59.346 37.037 2.38 0.00 44.50 4.35
432 433 5.086104 AGCAATAGTAATTGAGGTGACGT 57.914 39.130 2.38 0.00 44.50 4.34
433 434 4.870426 AGCAATAGTAATTGAGGTGACGTG 59.130 41.667 0.00 0.00 44.50 4.49
434 435 4.034048 GCAATAGTAATTGAGGTGACGTGG 59.966 45.833 0.00 0.00 44.50 4.94
435 436 2.094762 AGTAATTGAGGTGACGTGGC 57.905 50.000 0.00 0.00 0.00 5.01
436 437 1.346395 AGTAATTGAGGTGACGTGGCA 59.654 47.619 0.00 0.00 0.00 4.92
437 438 2.027192 AGTAATTGAGGTGACGTGGCAT 60.027 45.455 0.00 0.00 0.00 4.40
438 439 1.909700 AATTGAGGTGACGTGGCATT 58.090 45.000 0.00 0.00 0.00 3.56
439 440 2.779755 ATTGAGGTGACGTGGCATTA 57.220 45.000 0.00 0.00 0.00 1.90
440 441 2.779755 TTGAGGTGACGTGGCATTAT 57.220 45.000 0.00 0.00 0.00 1.28
441 442 2.779755 TGAGGTGACGTGGCATTATT 57.220 45.000 0.00 0.00 0.00 1.40
442 443 3.897141 TGAGGTGACGTGGCATTATTA 57.103 42.857 0.00 0.00 0.00 0.98
443 444 3.792401 TGAGGTGACGTGGCATTATTAG 58.208 45.455 0.00 0.00 0.00 1.73
444 445 2.544267 GAGGTGACGTGGCATTATTAGC 59.456 50.000 0.00 0.00 0.00 3.09
445 446 2.093181 AGGTGACGTGGCATTATTAGCA 60.093 45.455 0.00 0.00 0.00 3.49
446 447 2.287915 GGTGACGTGGCATTATTAGCAG 59.712 50.000 0.00 0.00 0.00 4.24
447 448 3.194861 GTGACGTGGCATTATTAGCAGA 58.805 45.455 0.00 0.00 0.00 4.26
448 449 3.246226 GTGACGTGGCATTATTAGCAGAG 59.754 47.826 0.00 0.00 0.00 3.35
449 450 2.802816 GACGTGGCATTATTAGCAGAGG 59.197 50.000 0.00 0.00 0.00 3.69
450 451 2.170607 ACGTGGCATTATTAGCAGAGGT 59.829 45.455 0.00 0.00 0.00 3.85
451 452 3.206150 CGTGGCATTATTAGCAGAGGTT 58.794 45.455 0.00 0.00 0.00 3.50
452 453 4.141801 ACGTGGCATTATTAGCAGAGGTTA 60.142 41.667 0.00 0.00 0.00 2.85
453 454 4.211374 CGTGGCATTATTAGCAGAGGTTAC 59.789 45.833 0.00 0.00 0.00 2.50
454 455 5.368989 GTGGCATTATTAGCAGAGGTTACT 58.631 41.667 0.00 0.00 0.00 2.24
455 456 5.237344 GTGGCATTATTAGCAGAGGTTACTG 59.763 44.000 0.00 0.00 40.43 2.74
456 457 5.104527 TGGCATTATTAGCAGAGGTTACTGT 60.105 40.000 0.00 0.00 39.73 3.55
457 458 6.099125 TGGCATTATTAGCAGAGGTTACTGTA 59.901 38.462 0.00 0.00 39.73 2.74
458 459 6.647067 GGCATTATTAGCAGAGGTTACTGTAG 59.353 42.308 0.00 0.00 39.73 2.74
459 460 6.146347 GCATTATTAGCAGAGGTTACTGTAGC 59.854 42.308 0.00 0.00 39.73 3.58
460 461 7.437748 CATTATTAGCAGAGGTTACTGTAGCT 58.562 38.462 1.71 0.00 39.73 3.32
461 462 5.941555 ATTAGCAGAGGTTACTGTAGCTT 57.058 39.130 0.00 0.00 39.73 3.74
462 463 3.601443 AGCAGAGGTTACTGTAGCTTG 57.399 47.619 0.00 0.74 39.73 4.01
463 464 3.165875 AGCAGAGGTTACTGTAGCTTGA 58.834 45.455 0.00 0.00 39.73 3.02
464 465 3.772025 AGCAGAGGTTACTGTAGCTTGAT 59.228 43.478 0.00 0.00 39.73 2.57
465 466 4.223923 AGCAGAGGTTACTGTAGCTTGATT 59.776 41.667 0.00 0.00 39.73 2.57
466 467 5.422331 AGCAGAGGTTACTGTAGCTTGATTA 59.578 40.000 0.00 0.00 39.73 1.75
467 468 6.098982 AGCAGAGGTTACTGTAGCTTGATTAT 59.901 38.462 0.00 0.00 39.73 1.28
468 469 6.422400 GCAGAGGTTACTGTAGCTTGATTATC 59.578 42.308 0.00 0.00 39.73 1.75
469 470 6.926272 CAGAGGTTACTGTAGCTTGATTATCC 59.074 42.308 0.00 0.00 33.73 2.59
470 471 5.844004 AGGTTACTGTAGCTTGATTATCCG 58.156 41.667 0.00 0.00 0.00 4.18
471 472 4.989168 GGTTACTGTAGCTTGATTATCCGG 59.011 45.833 0.00 0.00 0.00 5.14
472 473 3.753294 ACTGTAGCTTGATTATCCGGG 57.247 47.619 0.00 0.00 0.00 5.73
473 474 2.224305 ACTGTAGCTTGATTATCCGGGC 60.224 50.000 0.00 0.00 0.00 6.13
474 475 1.270094 TGTAGCTTGATTATCCGGGCG 60.270 52.381 0.00 0.00 0.00 6.13
475 476 1.045407 TAGCTTGATTATCCGGGCGT 58.955 50.000 0.00 0.00 0.00 5.68
476 477 0.249911 AGCTTGATTATCCGGGCGTC 60.250 55.000 0.00 0.00 0.00 5.19
477 478 0.531974 GCTTGATTATCCGGGCGTCA 60.532 55.000 0.00 0.00 0.00 4.35
478 479 1.217882 CTTGATTATCCGGGCGTCAC 58.782 55.000 0.00 0.00 0.00 3.67
479 480 0.537653 TTGATTATCCGGGCGTCACA 59.462 50.000 0.00 0.00 0.00 3.58
480 481 0.104120 TGATTATCCGGGCGTCACAG 59.896 55.000 0.00 0.00 0.00 3.66
481 482 1.222115 GATTATCCGGGCGTCACAGC 61.222 60.000 0.00 0.00 0.00 4.40
482 483 2.971428 ATTATCCGGGCGTCACAGCG 62.971 60.000 0.00 0.00 38.18 5.18
670 675 7.821595 TTTATTACAGTCACGGTGTATTCTG 57.178 36.000 8.17 13.69 30.54 3.02
802 811 0.257328 ACCCCACACACATTGACACA 59.743 50.000 0.00 0.00 0.00 3.72
850 888 3.386237 GAGGAGCTCACCGTGCCT 61.386 66.667 17.19 1.04 34.73 4.75
938 983 4.069232 CACCGCTTCTCCCGCTCA 62.069 66.667 0.00 0.00 0.00 4.26
944 989 3.077556 TTCTCCCGCTCAGCTCCC 61.078 66.667 0.00 0.00 0.00 4.30
953 998 2.683933 TCAGCTCCCCCTCGGTTC 60.684 66.667 0.00 0.00 0.00 3.62
970 1015 0.320374 TTCTGGTTTCGCGATCAGGT 59.680 50.000 24.31 0.00 0.00 4.00
1168 1237 0.184933 CTGTCCCGATCTCTCCCTCT 59.815 60.000 0.00 0.00 0.00 3.69
1169 1238 0.183971 TGTCCCGATCTCTCCCTCTC 59.816 60.000 0.00 0.00 0.00 3.20
1172 1241 0.605319 CCCGATCTCTCCCTCTCTCG 60.605 65.000 0.00 0.00 0.00 4.04
1449 1518 3.181967 GAGCAGTACAGGTGCGCG 61.182 66.667 0.00 0.00 46.06 6.86
1481 1556 4.227134 CCCGGCCTCGATCTGGTG 62.227 72.222 0.00 1.26 39.00 4.17
1482 1557 4.899239 CCGGCCTCGATCTGGTGC 62.899 72.222 0.00 0.00 39.00 5.01
1554 1629 2.513753 TGATTTGACCCGAATTGCACT 58.486 42.857 0.00 0.00 0.00 4.40
1556 1631 0.313672 TTTGACCCGAATTGCACTGC 59.686 50.000 0.00 0.00 0.00 4.40
1639 1714 1.671845 GGACTCGGAGCAGTACTGTAG 59.328 57.143 23.44 14.80 0.00 2.74
1684 1761 6.036844 CCATATCACTTGTGAGAAGTGTCATG 59.963 42.308 19.97 20.48 45.75 3.07
1704 1781 2.037144 GCTGATCCATGGAGCCAAAAT 58.963 47.619 26.62 4.30 0.00 1.82
1725 1803 6.966534 AATTCCATATCCACCAATTGTCTC 57.033 37.500 4.43 0.00 0.00 3.36
1889 1967 2.840651 CTGGGTTGTGGTCTTCCTCTAT 59.159 50.000 0.00 0.00 34.23 1.98
1959 2037 4.873827 TCTTGTGTCAGAAACTACACCAAC 59.126 41.667 0.00 0.00 44.29 3.77
1974 2052 7.552459 ACTACACCAACAAACAGCTAATTTTT 58.448 30.769 0.00 0.00 0.00 1.94
2005 2087 5.163884 GGCTTGTAGAACTTTATTCGTGACC 60.164 44.000 0.00 0.00 0.00 4.02
2059 2466 9.983804 CGTTGATTAGAAGTAGGAAAAATAACC 57.016 33.333 0.00 0.00 0.00 2.85
2152 2563 2.965805 TGCTCTGGCAAAATCTGGG 58.034 52.632 0.00 0.00 46.36 4.45
2156 2567 2.299867 GCTCTGGCAAAATCTGGGAAAA 59.700 45.455 0.00 0.00 38.54 2.29
2157 2568 3.244181 GCTCTGGCAAAATCTGGGAAAAA 60.244 43.478 0.00 0.00 38.54 1.94
2195 2614 6.016276 ACCATGTCAAACCAGATAAACAAGAC 60.016 38.462 0.00 0.00 0.00 3.01
2208 2641 8.660373 CAGATAAACAAGACAACTTAGCTTAGG 58.340 37.037 4.52 0.00 34.70 2.69
2246 2697 9.458374 CGATATTTTTCCTCTTCTCTTCTACTC 57.542 37.037 0.00 0.00 0.00 2.59
2248 2699 6.361768 TTTTTCCTCTTCTCTTCTACTCCC 57.638 41.667 0.00 0.00 0.00 4.30
2249 2700 4.957606 TTCCTCTTCTCTTCTACTCCCT 57.042 45.455 0.00 0.00 0.00 4.20
2250 2701 4.513406 TCCTCTTCTCTTCTACTCCCTC 57.487 50.000 0.00 0.00 0.00 4.30
2251 2702 3.203487 TCCTCTTCTCTTCTACTCCCTCC 59.797 52.174 0.00 0.00 0.00 4.30
2252 2703 3.211045 CTCTTCTCTTCTACTCCCTCCG 58.789 54.545 0.00 0.00 0.00 4.63
2253 2704 2.577105 TCTTCTCTTCTACTCCCTCCGT 59.423 50.000 0.00 0.00 0.00 4.69
2254 2705 2.713863 TCTCTTCTACTCCCTCCGTC 57.286 55.000 0.00 0.00 0.00 4.79
2255 2706 1.212441 TCTCTTCTACTCCCTCCGTCC 59.788 57.143 0.00 0.00 0.00 4.79
2256 2707 0.107312 TCTTCTACTCCCTCCGTCCG 60.107 60.000 0.00 0.00 0.00 4.79
2257 2708 1.077212 TTCTACTCCCTCCGTCCGG 60.077 63.158 0.00 0.00 0.00 5.14
2258 2709 1.565390 TTCTACTCCCTCCGTCCGGA 61.565 60.000 0.00 0.00 42.90 5.14
2259 2710 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2260 2711 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2261 2712 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2262 2713 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2263 2714 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2264 2715 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2265 2716 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2266 2717 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2267 2718 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2268 2719 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2269 2720 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2270 2721 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
2271 2722 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
2272 2723 3.442100 CGTCCGGAAATACTTGTCCTAC 58.558 50.000 5.23 0.00 0.00 3.18
2273 2724 3.119388 CGTCCGGAAATACTTGTCCTACA 60.119 47.826 5.23 0.00 0.00 2.74
2274 2725 4.618927 CGTCCGGAAATACTTGTCCTACAA 60.619 45.833 5.23 0.00 36.54 2.41
2275 2726 5.240121 GTCCGGAAATACTTGTCCTACAAA 58.760 41.667 5.23 0.00 37.69 2.83
2276 2727 5.878669 GTCCGGAAATACTTGTCCTACAAAT 59.121 40.000 5.23 0.00 37.69 2.32
2277 2728 5.878116 TCCGGAAATACTTGTCCTACAAATG 59.122 40.000 0.00 0.00 37.69 2.32
2278 2729 5.065988 CCGGAAATACTTGTCCTACAAATGG 59.934 44.000 0.00 0.00 37.69 3.16
2279 2730 5.646360 CGGAAATACTTGTCCTACAAATGGT 59.354 40.000 0.00 0.00 37.69 3.55
2280 2731 6.150474 CGGAAATACTTGTCCTACAAATGGTT 59.850 38.462 0.00 0.00 37.69 3.67
2281 2732 7.312899 GGAAATACTTGTCCTACAAATGGTTG 58.687 38.462 0.00 0.00 37.69 3.77
2283 2734 8.927675 AAATACTTGTCCTACAAATGGTTGTA 57.072 30.769 0.00 0.00 46.33 2.41
2284 2735 9.528489 AAATACTTGTCCTACAAATGGTTGTAT 57.472 29.630 0.10 0.00 46.57 2.29
2285 2736 8.732746 ATACTTGTCCTACAAATGGTTGTATC 57.267 34.615 0.10 0.00 46.57 2.24
2286 2737 6.779860 ACTTGTCCTACAAATGGTTGTATCT 58.220 36.000 0.10 0.00 46.57 1.98
2287 2738 7.913789 ACTTGTCCTACAAATGGTTGTATCTA 58.086 34.615 0.10 0.00 46.57 1.98
2288 2739 8.041323 ACTTGTCCTACAAATGGTTGTATCTAG 58.959 37.037 0.10 0.00 46.57 2.43
2289 2740 7.727578 TGTCCTACAAATGGTTGTATCTAGA 57.272 36.000 0.00 0.00 46.57 2.43
2290 2741 7.553334 TGTCCTACAAATGGTTGTATCTAGAC 58.447 38.462 0.00 6.20 46.57 2.59
2291 2742 7.399191 TGTCCTACAAATGGTTGTATCTAGACT 59.601 37.037 0.00 0.00 46.57 3.24
2292 2743 8.258708 GTCCTACAAATGGTTGTATCTAGACTT 58.741 37.037 0.00 0.00 46.57 3.01
2293 2744 8.258007 TCCTACAAATGGTTGTATCTAGACTTG 58.742 37.037 0.00 0.00 46.57 3.16
2294 2745 8.041323 CCTACAAATGGTTGTATCTAGACTTGT 58.959 37.037 0.00 0.00 46.57 3.16
2295 2746 9.436957 CTACAAATGGTTGTATCTAGACTTGTT 57.563 33.333 0.00 0.00 46.57 2.83
2296 2747 8.691661 ACAAATGGTTGTATCTAGACTTGTTT 57.308 30.769 0.00 0.00 46.33 2.83
2297 2748 9.131791 ACAAATGGTTGTATCTAGACTTGTTTT 57.868 29.630 0.00 0.00 46.33 2.43
2343 2794 6.732896 TCCATTTCTAGGACAAGTATCTCC 57.267 41.667 0.00 0.00 0.00 3.71
2344 2795 5.302059 TCCATTTCTAGGACAAGTATCTCCG 59.698 44.000 0.00 0.00 0.00 4.63
2345 2796 5.509840 CCATTTCTAGGACAAGTATCTCCGG 60.510 48.000 0.00 0.00 0.00 5.14
2346 2797 4.515028 TTCTAGGACAAGTATCTCCGGA 57.485 45.455 2.93 2.93 0.00 5.14
2347 2798 3.818180 TCTAGGACAAGTATCTCCGGAC 58.182 50.000 0.00 0.00 0.00 4.79
2348 2799 1.390565 AGGACAAGTATCTCCGGACG 58.609 55.000 0.00 0.00 0.00 4.79
2349 2800 0.384669 GGACAAGTATCTCCGGACGG 59.615 60.000 0.00 3.96 0.00 4.79
2350 2801 1.386533 GACAAGTATCTCCGGACGGA 58.613 55.000 13.40 13.40 42.90 4.69
2358 2809 2.273449 TCCGGACGGAGGGAGTAC 59.727 66.667 9.76 0.00 39.76 2.73
2359 2810 2.274760 CCGGACGGAGGGAGTACT 59.725 66.667 4.40 0.00 37.50 2.73
2360 2811 1.379576 CCGGACGGAGGGAGTACTT 60.380 63.158 4.40 0.00 37.50 2.24
2361 2812 1.382692 CCGGACGGAGGGAGTACTTC 61.383 65.000 4.40 0.00 37.50 3.01
2362 2813 1.712977 CGGACGGAGGGAGTACTTCG 61.713 65.000 0.00 0.00 44.95 3.79
2363 2814 0.393537 GGACGGAGGGAGTACTTCGA 60.394 60.000 0.00 0.00 42.05 3.71
2412 2909 8.671384 TCATAATCCCTTTACTCGTATTTTGG 57.329 34.615 0.00 0.00 0.00 3.28
2595 3092 7.232118 TGTTCATTGTCTGAGACTTCTATGA 57.768 36.000 14.42 13.30 34.68 2.15
3042 3600 6.096423 ACAATCTAGATGCCTTAACGTGACTA 59.904 38.462 5.86 0.00 0.00 2.59
3157 3738 8.052748 GGATATATGGTCCTAATGTATGGCAAA 58.947 37.037 0.00 0.00 32.85 3.68
3297 3897 6.749118 CGACCAAGGATTTTTCTTCATCATTC 59.251 38.462 0.00 0.00 0.00 2.67
3298 3898 6.624423 ACCAAGGATTTTTCTTCATCATTCG 58.376 36.000 0.00 0.00 0.00 3.34
3307 3907 5.885230 TTCTTCATCATTCGAATTGCACT 57.115 34.783 8.21 0.00 0.00 4.40
3358 3958 0.104120 TCACACACGGTCTTCCACTG 59.896 55.000 0.00 0.00 37.41 3.66
3627 4250 6.377146 GGCTTTCCTGATCTTATTTGGTTGTA 59.623 38.462 0.00 0.00 0.00 2.41
3727 4355 5.708230 TGGTTGTAATGTATCTTGGTGTTCC 59.292 40.000 0.00 0.00 0.00 3.62
3769 4397 5.056480 TGGAATATGGAACTTGCATACTCG 58.944 41.667 5.22 0.00 33.52 4.18
3783 4411 6.507958 TGCATACTCGAATGGAAAATTTCA 57.492 33.333 8.09 0.00 0.00 2.69
3790 4418 6.023357 TCGAATGGAAAATTTCATCAGCAA 57.977 33.333 8.09 0.00 0.00 3.91
3834 4466 4.143263 GCAAACTGCACACATTTATTCTGC 60.143 41.667 0.00 0.00 44.26 4.26
3917 4549 9.642343 TCTTGATAGTACAAAGGAGAGCTATTA 57.358 33.333 0.00 0.00 0.00 0.98
4074 4740 2.425592 CCGTTGAGAGCCACCACA 59.574 61.111 0.00 0.00 0.00 4.17
4079 4745 1.993701 TTGAGAGCCACCACAGCCAA 61.994 55.000 0.00 0.00 0.00 4.52
4160 4826 1.082104 CCTGCGCGACCAAGAAAAC 60.082 57.895 12.10 0.00 0.00 2.43
4165 4831 0.317519 CGCGACCAAGAAAACCCAAC 60.318 55.000 0.00 0.00 0.00 3.77
4173 4839 1.395635 AGAAAACCCAACCCGTCAAC 58.604 50.000 0.00 0.00 0.00 3.18
4190 4856 4.517285 GTCAACTCCTTCTGCAATATCCA 58.483 43.478 0.00 0.00 0.00 3.41
4194 4860 2.868583 CTCCTTCTGCAATATCCACACG 59.131 50.000 0.00 0.00 0.00 4.49
4229 4895 3.051392 GCAAAACGGGCAGGGATCG 62.051 63.158 0.00 0.00 0.00 3.69
4365 5031 1.296715 GCTTGAAGGCGAAGAGGGA 59.703 57.895 0.00 0.00 0.00 4.20
4449 5115 1.521681 CCGATCGGAAGACCTTGGC 60.522 63.158 30.62 0.00 46.97 4.52
4642 5308 0.320050 TGCGCAGTGAACTGGTGATA 59.680 50.000 5.66 0.00 43.94 2.15
4657 5323 5.067936 ACTGGTGATACTACAGTGTCTATGC 59.932 44.000 0.00 0.00 43.29 3.14
4658 5324 5.201243 TGGTGATACTACAGTGTCTATGCT 58.799 41.667 0.00 0.00 37.13 3.79
4659 5325 5.299531 TGGTGATACTACAGTGTCTATGCTC 59.700 44.000 0.00 0.00 37.13 4.26
4660 5326 5.444983 GTGATACTACAGTGTCTATGCTCG 58.555 45.833 0.00 0.00 37.13 5.03
4661 5327 5.007823 GTGATACTACAGTGTCTATGCTCGT 59.992 44.000 0.00 0.00 37.13 4.18
4662 5328 3.766676 ACTACAGTGTCTATGCTCGTG 57.233 47.619 0.00 0.00 0.00 4.35
4663 5329 3.082548 ACTACAGTGTCTATGCTCGTGT 58.917 45.455 0.00 0.00 0.00 4.49
4664 5330 2.638556 ACAGTGTCTATGCTCGTGTC 57.361 50.000 0.00 0.00 0.00 3.67
4665 5331 2.163509 ACAGTGTCTATGCTCGTGTCT 58.836 47.619 0.00 0.00 0.00 3.41
4666 5332 3.344515 ACAGTGTCTATGCTCGTGTCTA 58.655 45.455 0.00 0.00 0.00 2.59
4667 5333 3.948473 ACAGTGTCTATGCTCGTGTCTAT 59.052 43.478 0.00 0.00 0.00 1.98
4668 5334 4.201960 ACAGTGTCTATGCTCGTGTCTATG 60.202 45.833 0.00 0.00 0.00 2.23
4669 5335 3.316588 AGTGTCTATGCTCGTGTCTATGG 59.683 47.826 0.00 0.00 0.00 2.74
4670 5336 2.034685 TGTCTATGCTCGTGTCTATGGC 59.965 50.000 0.00 0.00 0.00 4.40
4671 5337 2.294791 GTCTATGCTCGTGTCTATGGCT 59.705 50.000 0.00 0.00 0.00 4.75
4672 5338 3.502595 GTCTATGCTCGTGTCTATGGCTA 59.497 47.826 0.00 0.00 0.00 3.93
4673 5339 2.802787 ATGCTCGTGTCTATGGCTAC 57.197 50.000 0.00 0.00 0.00 3.58
4674 5340 1.763968 TGCTCGTGTCTATGGCTACT 58.236 50.000 0.00 0.00 0.00 2.57
4675 5341 1.676529 TGCTCGTGTCTATGGCTACTC 59.323 52.381 0.00 0.00 0.00 2.59
4676 5342 1.950909 GCTCGTGTCTATGGCTACTCT 59.049 52.381 0.00 0.00 0.00 3.24
4677 5343 3.139850 GCTCGTGTCTATGGCTACTCTA 58.860 50.000 0.00 0.00 0.00 2.43
4678 5344 3.058777 GCTCGTGTCTATGGCTACTCTAC 60.059 52.174 0.00 0.00 0.00 2.59
4679 5345 4.127907 CTCGTGTCTATGGCTACTCTACA 58.872 47.826 0.00 0.00 0.00 2.74
4680 5346 3.875727 TCGTGTCTATGGCTACTCTACAC 59.124 47.826 0.00 0.00 34.00 2.90
4681 5347 3.878103 CGTGTCTATGGCTACTCTACACT 59.122 47.826 0.00 0.00 34.93 3.55
4682 5348 5.055144 CGTGTCTATGGCTACTCTACACTA 58.945 45.833 0.00 0.00 34.93 2.74
4683 5349 5.177881 CGTGTCTATGGCTACTCTACACTAG 59.822 48.000 0.00 0.00 34.93 2.57
4684 5350 6.056884 GTGTCTATGGCTACTCTACACTAGT 58.943 44.000 0.00 0.00 34.41 2.57
4685 5351 7.215789 GTGTCTATGGCTACTCTACACTAGTA 58.784 42.308 0.00 0.00 34.41 1.82
4686 5352 7.171337 GTGTCTATGGCTACTCTACACTAGTAC 59.829 44.444 0.00 0.00 34.41 2.73
4687 5353 7.070946 TGTCTATGGCTACTCTACACTAGTACT 59.929 40.741 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.838244 AGCAAAAGAAAAGAAACCCCC 57.162 42.857 0.00 0.00 0.00 5.40
18 19 5.428253 AGAAAGCAAAAGAAAAGAAACCCC 58.572 37.500 0.00 0.00 0.00 4.95
19 20 6.985188 AAGAAAGCAAAAGAAAAGAAACCC 57.015 33.333 0.00 0.00 0.00 4.11
95 96 8.131731 GCCATTTTGGTATTTTGCTAAAACAAA 58.868 29.630 13.22 13.22 40.46 2.83
96 97 7.283127 TGCCATTTTGGTATTTTGCTAAAACAA 59.717 29.630 0.00 1.72 40.46 2.83
97 98 6.767902 TGCCATTTTGGTATTTTGCTAAAACA 59.232 30.769 0.00 0.00 40.46 2.83
98 99 7.075121 GTGCCATTTTGGTATTTTGCTAAAAC 58.925 34.615 0.00 0.00 40.46 2.43
99 100 6.205658 GGTGCCATTTTGGTATTTTGCTAAAA 59.794 34.615 0.00 0.00 40.46 1.52
100 101 5.703130 GGTGCCATTTTGGTATTTTGCTAAA 59.297 36.000 0.00 0.00 40.46 1.85
101 102 5.012561 AGGTGCCATTTTGGTATTTTGCTAA 59.987 36.000 0.00 0.00 40.46 3.09
102 103 4.530161 AGGTGCCATTTTGGTATTTTGCTA 59.470 37.500 0.00 0.00 40.46 3.49
103 104 3.327464 AGGTGCCATTTTGGTATTTTGCT 59.673 39.130 0.00 0.00 40.46 3.91
104 105 3.673902 AGGTGCCATTTTGGTATTTTGC 58.326 40.909 0.00 0.00 40.46 3.68
105 106 7.920160 AATTAGGTGCCATTTTGGTATTTTG 57.080 32.000 0.00 0.00 40.46 2.44
106 107 7.941790 ACAAATTAGGTGCCATTTTGGTATTTT 59.058 29.630 12.05 0.00 40.46 1.82
107 108 7.457561 ACAAATTAGGTGCCATTTTGGTATTT 58.542 30.769 12.05 0.00 40.46 1.40
108 109 7.014988 ACAAATTAGGTGCCATTTTGGTATT 57.985 32.000 12.05 0.00 40.46 1.89
109 110 6.619329 ACAAATTAGGTGCCATTTTGGTAT 57.381 33.333 12.05 0.00 40.46 2.73
110 111 6.183361 ACAACAAATTAGGTGCCATTTTGGTA 60.183 34.615 12.05 0.00 40.46 3.25
111 112 4.972751 ACAAATTAGGTGCCATTTTGGT 57.027 36.364 12.05 0.00 40.46 3.67
112 113 5.062528 ACAACAAATTAGGTGCCATTTTGG 58.937 37.500 12.05 0.00 41.55 3.28
113 114 6.616774 AACAACAAATTAGGTGCCATTTTG 57.383 33.333 8.16 8.16 34.34 2.44
114 115 6.708502 GGTAACAACAAATTAGGTGCCATTTT 59.291 34.615 0.00 0.00 0.00 1.82
115 116 6.227522 GGTAACAACAAATTAGGTGCCATTT 58.772 36.000 0.00 0.00 0.00 2.32
116 117 5.789521 GGTAACAACAAATTAGGTGCCATT 58.210 37.500 0.00 0.00 0.00 3.16
117 118 5.400066 GGTAACAACAAATTAGGTGCCAT 57.600 39.130 0.00 0.00 0.00 4.40
118 119 4.857509 GGTAACAACAAATTAGGTGCCA 57.142 40.909 0.00 0.00 0.00 4.92
133 134 1.746220 GCCGTGGCATATTTGGTAACA 59.254 47.619 5.89 0.00 43.51 2.41
134 135 1.066454 GGCCGTGGCATATTTGGTAAC 59.934 52.381 13.76 0.00 44.11 2.50
135 136 1.341089 TGGCCGTGGCATATTTGGTAA 60.341 47.619 13.76 0.00 44.11 2.85
136 137 0.256177 TGGCCGTGGCATATTTGGTA 59.744 50.000 13.76 0.00 44.11 3.25
137 138 1.000270 TGGCCGTGGCATATTTGGT 60.000 52.632 13.76 0.00 44.11 3.67
138 139 1.318886 TGTGGCCGTGGCATATTTGG 61.319 55.000 13.76 0.00 44.11 3.28
139 140 0.746063 ATGTGGCCGTGGCATATTTG 59.254 50.000 13.76 0.00 44.11 2.32
140 141 1.484038 AATGTGGCCGTGGCATATTT 58.516 45.000 13.76 0.00 44.48 1.40
141 142 3.205815 AATGTGGCCGTGGCATATT 57.794 47.368 13.76 13.48 42.80 1.28
142 143 1.953686 GTTAATGTGGCCGTGGCATAT 59.046 47.619 13.76 2.33 41.12 1.78
143 144 1.065053 AGTTAATGTGGCCGTGGCATA 60.065 47.619 13.76 0.00 44.11 3.14
144 145 0.323360 AGTTAATGTGGCCGTGGCAT 60.323 50.000 13.76 0.00 44.11 4.40
145 146 0.538516 AAGTTAATGTGGCCGTGGCA 60.539 50.000 13.76 0.00 44.11 4.92
146 147 0.109319 CAAGTTAATGTGGCCGTGGC 60.109 55.000 1.16 1.16 41.06 5.01
147 148 0.109319 GCAAGTTAATGTGGCCGTGG 60.109 55.000 0.00 0.00 0.00 4.94
148 149 0.881118 AGCAAGTTAATGTGGCCGTG 59.119 50.000 0.00 0.00 0.00 4.94
149 150 2.081462 GTAGCAAGTTAATGTGGCCGT 58.919 47.619 0.00 0.00 0.00 5.68
150 151 1.400494 GGTAGCAAGTTAATGTGGCCG 59.600 52.381 0.00 0.00 0.00 6.13
151 152 1.749063 GGGTAGCAAGTTAATGTGGCC 59.251 52.381 0.00 0.00 0.00 5.36
152 153 2.442413 TGGGTAGCAAGTTAATGTGGC 58.558 47.619 0.00 0.00 0.00 5.01
153 154 4.522789 AGTTTGGGTAGCAAGTTAATGTGG 59.477 41.667 0.00 0.00 0.00 4.17
154 155 5.705609 AGTTTGGGTAGCAAGTTAATGTG 57.294 39.130 0.00 0.00 0.00 3.21
155 156 7.826918 TTTAGTTTGGGTAGCAAGTTAATGT 57.173 32.000 0.00 0.00 0.00 2.71
158 159 9.577222 ACTATTTTAGTTTGGGTAGCAAGTTAA 57.423 29.630 0.00 0.00 34.86 2.01
159 160 9.577222 AACTATTTTAGTTTGGGTAGCAAGTTA 57.423 29.630 0.00 0.00 46.27 2.24
160 161 8.473358 AACTATTTTAGTTTGGGTAGCAAGTT 57.527 30.769 0.00 0.00 46.27 2.66
218 219 9.983024 TGGATAAAACATCAGGGAAAACTATTA 57.017 29.630 0.00 0.00 0.00 0.98
219 220 8.893563 TGGATAAAACATCAGGGAAAACTATT 57.106 30.769 0.00 0.00 0.00 1.73
220 221 9.136323 GATGGATAAAACATCAGGGAAAACTAT 57.864 33.333 0.00 0.00 43.21 2.12
221 222 8.336235 AGATGGATAAAACATCAGGGAAAACTA 58.664 33.333 7.99 0.00 45.49 2.24
222 223 7.184862 AGATGGATAAAACATCAGGGAAAACT 58.815 34.615 7.99 0.00 45.49 2.66
223 224 7.410120 AGATGGATAAAACATCAGGGAAAAC 57.590 36.000 7.99 0.00 45.49 2.43
224 225 9.713684 ATTAGATGGATAAAACATCAGGGAAAA 57.286 29.630 7.99 0.00 45.49 2.29
227 228 9.170890 ACTATTAGATGGATAAAACATCAGGGA 57.829 33.333 7.99 0.00 45.49 4.20
277 278 3.365472 AGGCAATTATGGTGGAGAAACC 58.635 45.455 0.00 0.00 40.94 3.27
278 279 5.507985 GCATAGGCAATTATGGTGGAGAAAC 60.508 44.000 0.00 0.00 40.72 2.78
279 280 4.584325 GCATAGGCAATTATGGTGGAGAAA 59.416 41.667 0.00 0.00 40.72 2.52
280 281 4.144297 GCATAGGCAATTATGGTGGAGAA 58.856 43.478 0.00 0.00 40.72 2.87
281 282 3.754965 GCATAGGCAATTATGGTGGAGA 58.245 45.455 0.00 0.00 40.72 3.71
295 296 5.928264 GGATTGAACCAAATAATGCATAGGC 59.072 40.000 0.00 0.00 41.68 3.93
296 297 6.016360 TCGGATTGAACCAAATAATGCATAGG 60.016 38.462 0.00 0.00 0.00 2.57
297 298 6.969366 TCGGATTGAACCAAATAATGCATAG 58.031 36.000 0.00 0.00 0.00 2.23
298 299 6.951062 TCGGATTGAACCAAATAATGCATA 57.049 33.333 0.00 0.00 0.00 3.14
299 300 5.850557 TCGGATTGAACCAAATAATGCAT 57.149 34.783 0.00 0.00 0.00 3.96
300 301 5.651387 TTCGGATTGAACCAAATAATGCA 57.349 34.783 0.00 0.00 0.00 3.96
377 378 9.052080 GCGTTAGTTAGAAACTGATTCAAATTC 57.948 33.333 2.59 3.90 42.84 2.17
378 379 7.744715 CGCGTTAGTTAGAAACTGATTCAAATT 59.255 33.333 0.00 0.00 42.84 1.82
379 380 7.117236 TCGCGTTAGTTAGAAACTGATTCAAAT 59.883 33.333 5.77 0.00 42.84 2.32
380 381 6.421501 TCGCGTTAGTTAGAAACTGATTCAAA 59.578 34.615 5.77 0.00 42.84 2.69
381 382 5.921976 TCGCGTTAGTTAGAAACTGATTCAA 59.078 36.000 5.77 0.00 42.84 2.69
382 383 5.463286 TCGCGTTAGTTAGAAACTGATTCA 58.537 37.500 5.77 0.00 42.84 2.57
383 384 5.798934 TCTCGCGTTAGTTAGAAACTGATTC 59.201 40.000 5.77 0.00 42.84 2.52
384 385 5.706916 TCTCGCGTTAGTTAGAAACTGATT 58.293 37.500 5.77 0.00 42.84 2.57
385 386 5.306532 TCTCGCGTTAGTTAGAAACTGAT 57.693 39.130 5.77 0.00 42.84 2.90
386 387 4.754372 TCTCGCGTTAGTTAGAAACTGA 57.246 40.909 5.77 0.00 42.84 3.41
387 388 6.291164 GCTAATCTCGCGTTAGTTAGAAACTG 60.291 42.308 19.40 5.23 42.84 3.16
388 389 5.742926 GCTAATCTCGCGTTAGTTAGAAACT 59.257 40.000 19.40 0.00 45.40 2.66
389 390 5.514204 TGCTAATCTCGCGTTAGTTAGAAAC 59.486 40.000 19.40 8.64 32.90 2.78
390 391 5.643664 TGCTAATCTCGCGTTAGTTAGAAA 58.356 37.500 19.40 9.43 32.90 2.52
391 392 5.239359 TGCTAATCTCGCGTTAGTTAGAA 57.761 39.130 19.40 11.32 32.90 2.10
392 393 4.888038 TGCTAATCTCGCGTTAGTTAGA 57.112 40.909 19.40 10.36 32.90 2.10
393 394 6.856938 ACTATTGCTAATCTCGCGTTAGTTAG 59.143 38.462 5.77 11.66 32.90 2.34
394 395 6.732154 ACTATTGCTAATCTCGCGTTAGTTA 58.268 36.000 5.77 1.12 32.90 2.24
395 396 5.589192 ACTATTGCTAATCTCGCGTTAGTT 58.411 37.500 5.77 0.00 32.90 2.24
396 397 5.184340 ACTATTGCTAATCTCGCGTTAGT 57.816 39.130 5.77 0.00 32.90 2.24
397 398 7.798486 ATTACTATTGCTAATCTCGCGTTAG 57.202 36.000 5.77 8.34 33.36 2.34
398 399 7.863877 TCAATTACTATTGCTAATCTCGCGTTA 59.136 33.333 5.77 0.00 40.78 3.18
399 400 6.700081 TCAATTACTATTGCTAATCTCGCGTT 59.300 34.615 5.77 0.00 40.78 4.84
400 401 6.213677 TCAATTACTATTGCTAATCTCGCGT 58.786 36.000 5.77 0.00 40.78 6.01
401 402 6.183360 CCTCAATTACTATTGCTAATCTCGCG 60.183 42.308 0.00 0.00 40.78 5.87
402 403 6.647067 ACCTCAATTACTATTGCTAATCTCGC 59.353 38.462 0.00 0.00 40.78 5.03
403 404 7.867909 TCACCTCAATTACTATTGCTAATCTCG 59.132 37.037 0.00 0.00 40.78 4.04
404 405 8.983724 GTCACCTCAATTACTATTGCTAATCTC 58.016 37.037 0.00 0.00 40.78 2.75
405 406 7.653713 CGTCACCTCAATTACTATTGCTAATCT 59.346 37.037 0.00 0.00 40.78 2.40
406 407 7.438459 ACGTCACCTCAATTACTATTGCTAATC 59.562 37.037 0.00 0.00 40.78 1.75
407 408 7.224753 CACGTCACCTCAATTACTATTGCTAAT 59.775 37.037 0.00 0.00 40.78 1.73
408 409 6.533723 CACGTCACCTCAATTACTATTGCTAA 59.466 38.462 0.00 0.00 40.78 3.09
409 410 6.040247 CACGTCACCTCAATTACTATTGCTA 58.960 40.000 0.00 0.00 40.78 3.49
410 411 4.870426 CACGTCACCTCAATTACTATTGCT 59.130 41.667 0.00 0.00 40.78 3.91
411 412 4.034048 CCACGTCACCTCAATTACTATTGC 59.966 45.833 0.00 0.00 40.78 3.56
412 413 4.034048 GCCACGTCACCTCAATTACTATTG 59.966 45.833 0.00 0.00 42.06 1.90
413 414 4.189231 GCCACGTCACCTCAATTACTATT 58.811 43.478 0.00 0.00 0.00 1.73
414 415 3.196901 TGCCACGTCACCTCAATTACTAT 59.803 43.478 0.00 0.00 0.00 2.12
415 416 2.563620 TGCCACGTCACCTCAATTACTA 59.436 45.455 0.00 0.00 0.00 1.82
416 417 1.346395 TGCCACGTCACCTCAATTACT 59.654 47.619 0.00 0.00 0.00 2.24
417 418 1.803334 TGCCACGTCACCTCAATTAC 58.197 50.000 0.00 0.00 0.00 1.89
418 419 2.779755 ATGCCACGTCACCTCAATTA 57.220 45.000 0.00 0.00 0.00 1.40
419 420 1.909700 AATGCCACGTCACCTCAATT 58.090 45.000 0.00 0.00 0.00 2.32
420 421 2.779755 TAATGCCACGTCACCTCAAT 57.220 45.000 0.00 0.00 0.00 2.57
421 422 2.779755 ATAATGCCACGTCACCTCAA 57.220 45.000 0.00 0.00 0.00 3.02
422 423 2.779755 AATAATGCCACGTCACCTCA 57.220 45.000 0.00 0.00 0.00 3.86
423 424 2.544267 GCTAATAATGCCACGTCACCTC 59.456 50.000 0.00 0.00 0.00 3.85
424 425 2.093181 TGCTAATAATGCCACGTCACCT 60.093 45.455 0.00 0.00 0.00 4.00
425 426 2.285083 TGCTAATAATGCCACGTCACC 58.715 47.619 0.00 0.00 0.00 4.02
426 427 3.194861 TCTGCTAATAATGCCACGTCAC 58.805 45.455 0.00 0.00 0.00 3.67
427 428 3.457234 CTCTGCTAATAATGCCACGTCA 58.543 45.455 0.00 0.00 0.00 4.35
428 429 2.802816 CCTCTGCTAATAATGCCACGTC 59.197 50.000 0.00 0.00 0.00 4.34
429 430 2.170607 ACCTCTGCTAATAATGCCACGT 59.829 45.455 0.00 0.00 0.00 4.49
430 431 2.838736 ACCTCTGCTAATAATGCCACG 58.161 47.619 0.00 0.00 0.00 4.94
431 432 5.237344 CAGTAACCTCTGCTAATAATGCCAC 59.763 44.000 0.00 0.00 0.00 5.01
432 433 5.104527 ACAGTAACCTCTGCTAATAATGCCA 60.105 40.000 0.00 0.00 38.84 4.92
433 434 5.368989 ACAGTAACCTCTGCTAATAATGCC 58.631 41.667 0.00 0.00 38.84 4.40
434 435 6.146347 GCTACAGTAACCTCTGCTAATAATGC 59.854 42.308 0.00 0.00 38.84 3.56
435 436 7.437748 AGCTACAGTAACCTCTGCTAATAATG 58.562 38.462 0.00 0.00 38.84 1.90
436 437 7.604657 AGCTACAGTAACCTCTGCTAATAAT 57.395 36.000 0.00 0.00 38.84 1.28
437 438 7.123697 TCAAGCTACAGTAACCTCTGCTAATAA 59.876 37.037 0.00 0.00 38.84 1.40
438 439 6.605995 TCAAGCTACAGTAACCTCTGCTAATA 59.394 38.462 0.00 0.00 38.84 0.98
439 440 5.422331 TCAAGCTACAGTAACCTCTGCTAAT 59.578 40.000 0.00 0.00 38.84 1.73
440 441 4.770531 TCAAGCTACAGTAACCTCTGCTAA 59.229 41.667 0.00 0.00 38.84 3.09
441 442 4.341487 TCAAGCTACAGTAACCTCTGCTA 58.659 43.478 0.00 0.00 38.84 3.49
442 443 3.165875 TCAAGCTACAGTAACCTCTGCT 58.834 45.455 0.00 0.00 38.84 4.24
443 444 3.594603 TCAAGCTACAGTAACCTCTGC 57.405 47.619 0.00 0.00 38.84 4.26
444 445 6.926272 GGATAATCAAGCTACAGTAACCTCTG 59.074 42.308 0.00 0.00 40.80 3.35
445 446 6.239064 CGGATAATCAAGCTACAGTAACCTCT 60.239 42.308 0.00 0.00 0.00 3.69
446 447 5.921408 CGGATAATCAAGCTACAGTAACCTC 59.079 44.000 0.00 0.00 0.00 3.85
447 448 5.221461 CCGGATAATCAAGCTACAGTAACCT 60.221 44.000 0.00 0.00 0.00 3.50
448 449 4.989168 CCGGATAATCAAGCTACAGTAACC 59.011 45.833 0.00 0.00 0.00 2.85
449 450 4.989168 CCCGGATAATCAAGCTACAGTAAC 59.011 45.833 0.73 0.00 0.00 2.50
450 451 4.502604 GCCCGGATAATCAAGCTACAGTAA 60.503 45.833 0.73 0.00 0.00 2.24
451 452 3.006537 GCCCGGATAATCAAGCTACAGTA 59.993 47.826 0.73 0.00 0.00 2.74
452 453 2.224305 GCCCGGATAATCAAGCTACAGT 60.224 50.000 0.73 0.00 0.00 3.55
453 454 2.417719 GCCCGGATAATCAAGCTACAG 58.582 52.381 0.73 0.00 0.00 2.74
454 455 1.270094 CGCCCGGATAATCAAGCTACA 60.270 52.381 0.73 0.00 0.00 2.74
455 456 1.270147 ACGCCCGGATAATCAAGCTAC 60.270 52.381 0.73 0.00 0.00 3.58
456 457 1.000506 GACGCCCGGATAATCAAGCTA 59.999 52.381 0.73 0.00 0.00 3.32
457 458 0.249911 GACGCCCGGATAATCAAGCT 60.250 55.000 0.73 0.00 0.00 3.74
458 459 0.531974 TGACGCCCGGATAATCAAGC 60.532 55.000 0.73 0.00 0.00 4.01
459 460 1.217882 GTGACGCCCGGATAATCAAG 58.782 55.000 0.73 0.00 0.00 3.02
460 461 0.537653 TGTGACGCCCGGATAATCAA 59.462 50.000 0.73 0.00 0.00 2.57
461 462 0.104120 CTGTGACGCCCGGATAATCA 59.896 55.000 0.73 0.00 0.00 2.57
462 463 1.222115 GCTGTGACGCCCGGATAATC 61.222 60.000 0.73 0.00 0.00 1.75
463 464 1.227556 GCTGTGACGCCCGGATAAT 60.228 57.895 0.73 0.00 0.00 1.28
464 465 2.185867 GCTGTGACGCCCGGATAA 59.814 61.111 0.73 0.00 0.00 1.75
465 466 4.201679 CGCTGTGACGCCCGGATA 62.202 66.667 0.73 0.00 0.00 2.59
472 473 3.558411 GATGGCTCGCTGTGACGC 61.558 66.667 4.71 4.71 0.00 5.19
473 474 1.016130 AAAGATGGCTCGCTGTGACG 61.016 55.000 0.00 0.00 0.00 4.35
474 475 1.160137 AAAAGATGGCTCGCTGTGAC 58.840 50.000 0.00 0.00 0.00 3.67
475 476 2.028112 ACTAAAAGATGGCTCGCTGTGA 60.028 45.455 0.00 0.00 0.00 3.58
476 477 2.349886 GACTAAAAGATGGCTCGCTGTG 59.650 50.000 0.00 0.00 0.00 3.66
477 478 2.028112 TGACTAAAAGATGGCTCGCTGT 60.028 45.455 0.00 0.00 0.00 4.40
478 479 2.606725 CTGACTAAAAGATGGCTCGCTG 59.393 50.000 0.00 0.00 0.00 5.18
479 480 2.497675 TCTGACTAAAAGATGGCTCGCT 59.502 45.455 0.00 0.00 0.00 4.93
480 481 2.893637 TCTGACTAAAAGATGGCTCGC 58.106 47.619 0.00 0.00 0.00 5.03
481 482 7.721286 AATATTCTGACTAAAAGATGGCTCG 57.279 36.000 0.00 0.00 0.00 5.03
611 616 9.994432 GTAAAGACTGATTTTCTATGGTTCATG 57.006 33.333 0.00 0.00 0.00 3.07
670 675 7.488471 GTGACACTGACTGTATATAACTGTTCC 59.512 40.741 0.00 0.00 40.05 3.62
688 693 3.689161 TGTGGAGAAAAAGTGTGACACTG 59.311 43.478 20.19 0.00 44.62 3.66
830 839 2.575993 CACGGTGAGCTCCTCCTG 59.424 66.667 12.15 11.93 0.00 3.86
850 888 2.363795 ATCCTCGGAGGCCACGAA 60.364 61.111 19.48 9.75 40.16 3.85
908 946 1.136984 GCGGTGAGATCGTCTTCGT 59.863 57.895 0.00 0.00 38.33 3.85
938 983 2.685380 CAGAACCGAGGGGGAGCT 60.685 66.667 0.00 0.00 39.97 4.09
944 989 2.033194 GCGAAACCAGAACCGAGGG 61.033 63.158 0.00 0.00 0.00 4.30
953 998 1.560923 CTACCTGATCGCGAAACCAG 58.439 55.000 15.24 19.69 0.00 4.00
1096 1165 4.767255 GGCTCGGCTGACAGGTGG 62.767 72.222 4.26 0.00 0.00 4.61
1278 1347 2.747855 GGCTTCTCGGGCAGGTTG 60.748 66.667 0.00 0.00 0.00 3.77
1449 1518 2.684104 GGGGAAAAGAGAGGGGGC 59.316 66.667 0.00 0.00 0.00 5.80
1450 1519 2.680370 CCGGGGAAAAGAGAGGGGG 61.680 68.421 0.00 0.00 0.00 5.40
1482 1557 4.082523 ATCACCAGACACGCGGGG 62.083 66.667 15.46 5.78 35.99 5.73
1597 1672 4.539870 CAGATCAAAAACAACTGCGACAT 58.460 39.130 0.00 0.00 0.00 3.06
1601 1676 3.003689 AGTCCAGATCAAAAACAACTGCG 59.996 43.478 0.00 0.00 0.00 5.18
1602 1677 4.540824 GAGTCCAGATCAAAAACAACTGC 58.459 43.478 0.00 0.00 0.00 4.40
1663 1738 8.637211 TCAGCATGACACTTCTCACAAGTGAT 62.637 42.308 18.94 5.63 44.81 3.06
1664 1739 7.417971 TCAGCATGACACTTCTCACAAGTGA 62.418 44.000 18.94 6.11 44.81 3.41
1684 1761 1.477553 TTTTGGCTCCATGGATCAGC 58.522 50.000 16.63 15.42 0.00 4.26
1704 1781 5.449297 TGAGACAATTGGTGGATATGGAA 57.551 39.130 10.83 0.00 0.00 3.53
1710 1788 5.953548 TCAAATCATGAGACAATTGGTGGAT 59.046 36.000 10.83 1.48 33.04 3.41
1725 1803 3.676172 GCACACCACAACATCAAATCATG 59.324 43.478 0.00 0.00 0.00 3.07
1889 1967 2.676632 TTTCGCCTTACGCATCCTTA 57.323 45.000 0.00 0.00 43.23 2.69
1974 2052 7.361713 CGAATAAAGTTCTACAAGCCCATGAAA 60.362 37.037 0.00 0.00 0.00 2.69
1977 2055 5.354234 ACGAATAAAGTTCTACAAGCCCATG 59.646 40.000 0.00 0.00 0.00 3.66
1984 2062 6.987992 AGTTGGTCACGAATAAAGTTCTACAA 59.012 34.615 0.00 0.00 0.00 2.41
2059 2466 6.492007 AGTACTCATTTTCAAGCTGACATG 57.508 37.500 0.00 0.00 0.00 3.21
2063 2470 6.818644 GTGGATAGTACTCATTTTCAAGCTGA 59.181 38.462 0.00 0.00 0.00 4.26
2125 2536 2.706636 TGCCAGAGCACTGTTTCAC 58.293 52.632 10.37 0.00 46.52 3.18
2156 2567 9.131791 GGTTTGACATGGTAGTGGATAATATTT 57.868 33.333 0.00 0.00 0.00 1.40
2157 2568 8.278639 TGGTTTGACATGGTAGTGGATAATATT 58.721 33.333 0.00 0.00 0.00 1.28
2160 2571 6.069673 TCTGGTTTGACATGGTAGTGGATAAT 60.070 38.462 0.00 0.00 0.00 1.28
2161 2572 5.249622 TCTGGTTTGACATGGTAGTGGATAA 59.750 40.000 0.00 0.00 0.00 1.75
2162 2573 4.780554 TCTGGTTTGACATGGTAGTGGATA 59.219 41.667 0.00 0.00 0.00 2.59
2195 2614 4.215613 GGTGTGGTTTCCTAAGCTAAGTTG 59.784 45.833 0.00 0.00 32.98 3.16
2208 2641 5.048294 AGGAAAAATATCGTGGTGTGGTTTC 60.048 40.000 0.00 0.00 0.00 2.78
2246 2697 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2248 2699 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2249 2700 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2250 2701 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
2251 2702 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
2252 2703 4.460948 TGTAGGACAAGTATTTCCGGAC 57.539 45.455 1.83 0.00 36.95 4.79
2253 2704 5.486735 TTTGTAGGACAAGTATTTCCGGA 57.513 39.130 0.00 0.00 39.53 5.14
2254 2705 5.065988 CCATTTGTAGGACAAGTATTTCCGG 59.934 44.000 0.00 0.00 39.53 5.14
2255 2706 5.646360 ACCATTTGTAGGACAAGTATTTCCG 59.354 40.000 0.00 0.00 39.53 4.30
2256 2707 7.039993 ACAACCATTTGTAGGACAAGTATTTCC 60.040 37.037 0.00 0.00 44.53 3.13
2257 2708 7.882179 ACAACCATTTGTAGGACAAGTATTTC 58.118 34.615 0.00 0.00 44.53 2.17
2258 2709 7.833285 ACAACCATTTGTAGGACAAGTATTT 57.167 32.000 0.00 0.00 44.53 1.40
2317 2768 8.871125 GGAGATACTTGTCCTAGAAATGGATAA 58.129 37.037 0.00 0.00 35.87 1.75
2318 2769 7.176865 CGGAGATACTTGTCCTAGAAATGGATA 59.823 40.741 0.00 0.00 35.87 2.59
2319 2770 6.015010 CGGAGATACTTGTCCTAGAAATGGAT 60.015 42.308 0.00 0.00 35.87 3.41
2320 2771 5.302059 CGGAGATACTTGTCCTAGAAATGGA 59.698 44.000 0.00 0.00 33.06 3.41
2321 2772 5.509840 CCGGAGATACTTGTCCTAGAAATGG 60.510 48.000 0.00 0.00 33.06 3.16
2322 2773 5.302059 TCCGGAGATACTTGTCCTAGAAATG 59.698 44.000 0.00 0.00 33.06 2.32
2323 2774 5.302313 GTCCGGAGATACTTGTCCTAGAAAT 59.698 44.000 3.06 0.00 33.06 2.17
2324 2775 4.643784 GTCCGGAGATACTTGTCCTAGAAA 59.356 45.833 3.06 0.00 33.06 2.52
2325 2776 4.205587 GTCCGGAGATACTTGTCCTAGAA 58.794 47.826 3.06 0.00 33.06 2.10
2326 2777 3.743584 CGTCCGGAGATACTTGTCCTAGA 60.744 52.174 3.06 0.00 33.06 2.43
2327 2778 2.548904 CGTCCGGAGATACTTGTCCTAG 59.451 54.545 3.06 0.00 33.06 3.02
2328 2779 2.569059 CGTCCGGAGATACTTGTCCTA 58.431 52.381 3.06 0.00 33.06 2.94
2329 2780 1.390565 CGTCCGGAGATACTTGTCCT 58.609 55.000 3.06 0.00 33.06 3.85
2330 2781 0.384669 CCGTCCGGAGATACTTGTCC 59.615 60.000 3.06 0.00 37.50 4.02
2331 2782 1.386533 TCCGTCCGGAGATACTTGTC 58.613 55.000 3.06 0.00 39.76 3.18
2332 2783 3.583054 TCCGTCCGGAGATACTTGT 57.417 52.632 3.06 0.00 39.76 3.16
2341 2792 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
2342 2793 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
2343 2794 1.712977 CGAAGTACTCCCTCCGTCCG 61.713 65.000 0.00 0.00 0.00 4.79
2344 2795 0.393537 TCGAAGTACTCCCTCCGTCC 60.394 60.000 0.00 0.00 0.00 4.79
2345 2796 1.677942 ATCGAAGTACTCCCTCCGTC 58.322 55.000 0.00 0.00 0.00 4.79
2346 2797 2.140839 AATCGAAGTACTCCCTCCGT 57.859 50.000 0.00 0.00 0.00 4.69
2347 2798 3.212685 AGTAATCGAAGTACTCCCTCCG 58.787 50.000 0.00 0.00 0.00 4.63
2348 2799 4.834357 GAGTAATCGAAGTACTCCCTCC 57.166 50.000 20.98 4.72 41.03 4.30
2353 2804 4.740695 GCATGTGGAGTAATCGAAGTACTC 59.259 45.833 22.46 22.46 44.51 2.59
2354 2805 4.402793 AGCATGTGGAGTAATCGAAGTACT 59.597 41.667 10.93 10.93 34.46 2.73
2355 2806 4.683832 AGCATGTGGAGTAATCGAAGTAC 58.316 43.478 0.00 0.00 0.00 2.73
2356 2807 4.645136 AGAGCATGTGGAGTAATCGAAGTA 59.355 41.667 0.00 0.00 0.00 2.24
2357 2808 3.449018 AGAGCATGTGGAGTAATCGAAGT 59.551 43.478 0.00 0.00 0.00 3.01
2358 2809 4.047822 GAGAGCATGTGGAGTAATCGAAG 58.952 47.826 0.00 0.00 0.00 3.79
2359 2810 3.181475 GGAGAGCATGTGGAGTAATCGAA 60.181 47.826 0.00 0.00 0.00 3.71
2360 2811 2.362397 GGAGAGCATGTGGAGTAATCGA 59.638 50.000 0.00 0.00 0.00 3.59
2361 2812 2.101415 TGGAGAGCATGTGGAGTAATCG 59.899 50.000 0.00 0.00 0.00 3.34
2362 2813 3.133721 AGTGGAGAGCATGTGGAGTAATC 59.866 47.826 0.00 0.00 0.00 1.75
2363 2814 3.110705 AGTGGAGAGCATGTGGAGTAAT 58.889 45.455 0.00 0.00 0.00 1.89
2412 2909 9.612620 CAGTTTCCAGTCAAAATGAGTATAAAC 57.387 33.333 12.27 12.27 34.03 2.01
2550 3047 6.463995 ACAGCTCGAGATAGAATTTCTTCT 57.536 37.500 18.75 7.39 44.06 2.85
2595 3092 5.808366 TTCTGGTATCCTGCGATAAGATT 57.192 39.130 0.00 0.00 32.70 2.40
2900 3398 7.704472 TGACAATGTTTTTGTCCAATCAACTAC 59.296 33.333 14.06 0.00 46.01 2.73
2907 3405 8.855110 TGTATACTGACAATGTTTTTGTCCAAT 58.145 29.630 14.06 8.46 46.01 3.16
3011 3569 9.424319 ACGTTAAGGCATCTAGATTGTAATATG 57.576 33.333 1.33 0.00 0.00 1.78
3042 3600 9.268282 TCCTAAGGTCAAAGATTATAGTCAGTT 57.732 33.333 0.00 0.00 0.00 3.16
3276 3866 8.922058 ATTCGAATGATGAAGAAAAATCCTTG 57.078 30.769 10.50 0.00 0.00 3.61
3297 3897 1.078709 ACATCGGTCAGTGCAATTCG 58.921 50.000 0.00 0.00 0.00 3.34
3298 3898 2.076100 TCACATCGGTCAGTGCAATTC 58.924 47.619 0.00 0.00 35.76 2.17
3307 3907 1.372872 CGTGTGCTCACATCGGTCA 60.373 57.895 18.23 0.00 43.97 4.02
3411 4011 3.764434 TCATTCAGTACTGGGTCTGAGTC 59.236 47.826 22.48 0.00 40.91 3.36
3641 4264 2.614057 CCTCGTCAAAACAGCTTTCAGT 59.386 45.455 0.00 0.00 0.00 3.41
3727 4355 5.459536 TCCATAATCATCTCTCAGAACCG 57.540 43.478 0.00 0.00 0.00 4.44
3769 4397 7.894376 TCTTTGCTGATGAAATTTTCCATTC 57.106 32.000 6.68 2.65 0.00 2.67
3790 4418 5.953183 TGCTTCAACGCAAATAATCATCTT 58.047 33.333 0.00 0.00 36.89 2.40
3917 4549 4.262079 GGAGCCGAGCTACTGTAATGTAAT 60.262 45.833 1.26 0.00 39.88 1.89
3918 4550 3.067742 GGAGCCGAGCTACTGTAATGTAA 59.932 47.826 1.26 0.00 39.88 2.41
3919 4551 2.621998 GGAGCCGAGCTACTGTAATGTA 59.378 50.000 1.26 0.00 39.88 2.29
4064 4730 2.203337 TGTTGGCTGTGGTGGCTC 60.203 61.111 0.00 0.00 0.00 4.70
4092 4758 2.827190 ATCGTCGTCGGCCTGCTA 60.827 61.111 0.00 0.00 37.69 3.49
4152 4818 1.394618 TGACGGGTTGGGTTTTCTTG 58.605 50.000 0.00 0.00 0.00 3.02
4154 4820 1.064240 AGTTGACGGGTTGGGTTTTCT 60.064 47.619 0.00 0.00 0.00 2.52
4160 4826 0.605589 GAAGGAGTTGACGGGTTGGG 60.606 60.000 0.00 0.00 0.00 4.12
4165 4831 0.250295 TTGCAGAAGGAGTTGACGGG 60.250 55.000 0.00 0.00 0.00 5.28
4173 4839 2.868583 CGTGTGGATATTGCAGAAGGAG 59.131 50.000 0.00 0.00 0.00 3.69
4229 4895 0.394488 GAGCCCAAGGTAAAGGAGCC 60.394 60.000 0.00 0.00 0.00 4.70
4435 5101 3.702048 CCGGCCAAGGTCTTCCGA 61.702 66.667 2.24 0.00 44.23 4.55
4598 5264 2.038837 GCCAAACTAGCACCGGGAC 61.039 63.158 6.32 0.00 0.00 4.46
4599 5265 2.221299 AGCCAAACTAGCACCGGGA 61.221 57.895 6.32 0.00 0.00 5.14
4642 5308 3.082548 ACACGAGCATAGACACTGTAGT 58.917 45.455 0.00 0.00 0.00 2.73
4657 5323 4.024725 GTGTAGAGTAGCCATAGACACGAG 60.025 50.000 0.00 0.00 0.00 4.18
4658 5324 3.875727 GTGTAGAGTAGCCATAGACACGA 59.124 47.826 0.00 0.00 0.00 4.35
4659 5325 3.878103 AGTGTAGAGTAGCCATAGACACG 59.122 47.826 0.00 0.00 40.42 4.49
4660 5326 6.056884 ACTAGTGTAGAGTAGCCATAGACAC 58.943 44.000 0.00 0.00 36.75 3.67
4661 5327 6.249911 ACTAGTGTAGAGTAGCCATAGACA 57.750 41.667 0.00 0.00 0.00 3.41
4662 5328 7.444299 AGTACTAGTGTAGAGTAGCCATAGAC 58.556 42.308 5.39 0.00 30.08 2.59
4663 5329 7.615039 AGTACTAGTGTAGAGTAGCCATAGA 57.385 40.000 5.39 0.00 30.08 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.