Multiple sequence alignment - TraesCS3D01G114000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G114000 chr3D 100.000 8283 0 0 1 8283 67682582 67674300 0.000000e+00 15296.0
1 TraesCS3D01G114000 chr3D 84.333 300 37 8 7976 8270 281101581 281101875 1.360000e-72 285.0
2 TraesCS3D01G114000 chr3D 78.492 358 55 12 3858 4212 67696976 67696638 1.810000e-51 215.0
3 TraesCS3D01G114000 chr3D 88.435 147 10 3 6893 7039 443434230 443434369 3.980000e-38 171.0
4 TraesCS3D01G114000 chr3B 96.657 4577 96 24 2344 6909 114196810 114201340 0.000000e+00 7552.0
5 TraesCS3D01G114000 chr3B 94.060 2256 68 28 704 2930 114194581 114196799 0.000000e+00 3363.0
6 TraesCS3D01G114000 chr3B 90.669 643 41 5 7644 8283 114203771 114204397 0.000000e+00 837.0
7 TraesCS3D01G114000 chr3B 96.237 372 12 1 7034 7403 114201330 114201701 7.110000e-170 608.0
8 TraesCS3D01G114000 chr3B 85.625 320 15 11 7369 7664 114201624 114201936 2.900000e-79 307.0
9 TraesCS3D01G114000 chr3B 75.142 704 114 34 3715 4381 114149282 114149961 2.950000e-69 274.0
10 TraesCS3D01G114000 chr3B 81.338 284 51 2 4976 5259 114150913 114151194 6.470000e-56 230.0
11 TraesCS3D01G114000 chr3B 75.380 329 46 27 1 316 114192563 114192869 8.730000e-25 126.0
12 TraesCS3D01G114000 chr3A 96.457 3980 81 20 696 4648 79386830 79382884 0.000000e+00 6514.0
13 TraesCS3D01G114000 chr3A 96.425 1818 55 5 4647 6460 79382760 79380949 0.000000e+00 2988.0
14 TraesCS3D01G114000 chr3A 90.489 736 41 10 7551 8276 79365772 79365056 0.000000e+00 944.0
15 TraesCS3D01G114000 chr3A 95.682 440 16 2 6457 6896 79380869 79380433 0.000000e+00 704.0
16 TraesCS3D01G114000 chr3A 95.699 372 11 3 7037 7403 79380426 79380055 1.990000e-165 593.0
17 TraesCS3D01G114000 chr3A 79.301 372 55 13 3843 4211 79399127 79398775 2.990000e-59 241.0
18 TraesCS3D01G114000 chr3A 90.854 164 15 0 7369 7532 79380132 79379969 3.890000e-53 220.0
19 TraesCS3D01G114000 chr3A 81.746 252 27 11 1 245 79388720 79388481 8.480000e-45 193.0
20 TraesCS3D01G114000 chr2A 84.514 607 48 25 509 1080 73691482 73692077 7.260000e-155 558.0
21 TraesCS3D01G114000 chr2A 93.478 92 6 0 6277 6368 27327062 27327153 4.030000e-28 137.0
22 TraesCS3D01G114000 chr2A 90.291 103 7 3 6284 6383 776162413 776162515 1.880000e-26 132.0
23 TraesCS3D01G114000 chr2D 85.824 522 45 11 788 1297 74328365 74328869 2.050000e-145 527.0
24 TraesCS3D01G114000 chr2D 80.427 281 23 17 504 761 74328097 74328368 1.420000e-42 185.0
25 TraesCS3D01G114000 chr2D 91.667 132 9 1 6906 7037 308119826 308119955 1.840000e-41 182.0
26 TraesCS3D01G114000 chr2D 89.726 146 7 4 6893 7036 552189880 552190019 6.610000e-41 180.0
27 TraesCS3D01G114000 chr2D 88.158 152 11 4 6896 7046 561025614 561025759 3.070000e-39 174.0
28 TraesCS3D01G114000 chr2D 91.919 99 6 2 6278 6374 186756030 186755932 4.030000e-28 137.0
29 TraesCS3D01G114000 chr2D 92.553 94 6 1 6270 6363 15682892 15682984 5.220000e-27 134.0
30 TraesCS3D01G114000 chr2D 86.957 115 11 4 6261 6373 673376 673264 8.730000e-25 126.0
31 TraesCS3D01G114000 chr2D 88.889 72 6 2 337 407 480177961 480178031 4.120000e-13 87.9
32 TraesCS3D01G114000 chr5D 85.920 348 41 6 7930 8275 451482027 451482368 1.700000e-96 364.0
33 TraesCS3D01G114000 chr5D 85.044 341 43 8 7945 8281 339124017 339123681 2.860000e-89 340.0
34 TraesCS3D01G114000 chr5D 87.898 157 10 5 6882 7035 508159017 508158867 8.540000e-40 176.0
35 TraesCS3D01G114000 chr5A 84.709 327 43 7 7958 8279 439885207 439884883 3.730000e-83 320.0
36 TraesCS3D01G114000 chr5A 83.230 322 45 8 7957 8275 338294325 338294640 3.780000e-73 287.0
37 TraesCS3D01G114000 chr5A 91.089 101 7 1 6272 6370 479749006 479748906 1.450000e-27 135.0
38 TraesCS3D01G114000 chr4A 83.882 304 35 14 7983 8281 737832693 737832987 2.280000e-70 278.0
39 TraesCS3D01G114000 chr6A 83.607 305 39 9 7976 8275 350788456 350788158 8.190000e-70 276.0
40 TraesCS3D01G114000 chr1D 92.366 131 5 1 6906 7036 444519421 444519296 1.840000e-41 182.0
41 TraesCS3D01G114000 chr1D 91.111 135 7 3 6901 7035 55657993 55657864 2.380000e-40 178.0
42 TraesCS3D01G114000 chr1D 91.753 97 7 1 6277 6373 355081129 355081224 5.220000e-27 134.0
43 TraesCS3D01G114000 chr1D 84.884 86 8 4 993 1075 122537380 122537463 1.920000e-11 82.4
44 TraesCS3D01G114000 chr5B 90.071 141 8 3 6900 7040 640272737 640272871 2.380000e-40 178.0
45 TraesCS3D01G114000 chr1B 89.437 142 9 5 6906 7047 379903919 379903784 3.070000e-39 174.0
46 TraesCS3D01G114000 chr1B 84.706 85 8 4 993 1074 186459317 186459399 6.890000e-11 80.5
47 TraesCS3D01G114000 chr4D 96.471 85 3 0 6284 6368 333063352 333063268 3.120000e-29 141.0
48 TraesCS3D01G114000 chr4D 91.089 101 4 1 6263 6363 218516188 218516283 1.880000e-26 132.0
49 TraesCS3D01G114000 chr7A 72.807 342 58 28 13 331 639772766 639772437 5.330000e-12 84.2
50 TraesCS3D01G114000 chr6D 89.394 66 5 2 342 406 327018844 327018780 1.920000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G114000 chr3D 67674300 67682582 8282 True 15296.000000 15296 100.000000 1 8283 1 chr3D.!!$R1 8282
1 TraesCS3D01G114000 chr3B 114192563 114204397 11834 False 2132.166667 7552 89.771333 1 8283 6 chr3B.!!$F2 8282
2 TraesCS3D01G114000 chr3B 114149282 114151194 1912 False 252.000000 274 78.240000 3715 5259 2 chr3B.!!$F1 1544
3 TraesCS3D01G114000 chr3A 79379969 79388720 8751 True 1868.666667 6514 92.810500 1 7532 6 chr3A.!!$R3 7531
4 TraesCS3D01G114000 chr3A 79365056 79365772 716 True 944.000000 944 90.489000 7551 8276 1 chr3A.!!$R1 725
5 TraesCS3D01G114000 chr2A 73691482 73692077 595 False 558.000000 558 84.514000 509 1080 1 chr2A.!!$F2 571
6 TraesCS3D01G114000 chr2D 74328097 74328869 772 False 356.000000 527 83.125500 504 1297 2 chr2D.!!$F6 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
415 1583 0.040067 GAGCTGGTGCCGACAAAAAG 60.040 55.000 0.00 0.0 40.80 2.27 F
475 1643 0.112995 TGGCCCAGAGCACATTCTTT 59.887 50.000 0.00 0.0 46.50 2.52 F
1336 2792 0.249398 CGTCTTCCCCTCCGAATTGT 59.751 55.000 0.00 0.0 0.00 2.71 F
1711 3176 0.671472 CTTGCGCCAGTCATCACTCA 60.671 55.000 4.18 0.0 0.00 3.41 F
2184 3655 1.003108 GAAGAGGCTGCTAGAAACGC 58.997 55.000 0.00 0.0 0.00 4.84 F
3691 5762 1.985159 ACTGTGGGAGGCAATACTTGA 59.015 47.619 0.00 0.0 0.00 3.02 F
3896 5973 1.321743 CGATACGCTGTTGAGCTTCAC 59.678 52.381 0.00 0.0 43.77 3.18 F
4278 6392 2.956333 TCTCTGACAGTTTGAGACGGAA 59.044 45.455 1.59 0.0 32.63 4.30 F
5759 8412 2.200899 CCTTTTTGTTGGCTTGTTCCG 58.799 47.619 0.00 0.0 0.00 4.30 F
5901 8554 1.065199 GGTGGTGAGGAATCAGATGCA 60.065 52.381 0.00 0.0 0.00 3.96 F
7032 9776 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 3068 0.321830 AAACATTTGCAGCCATGGCC 60.322 50.000 33.14 19.25 43.17 5.36 R
1697 3162 2.033049 GCATTGATGAGTGATGACTGGC 59.967 50.000 0.00 0.00 30.16 4.85 R
2822 4889 1.216678 TGAAAAACTGGAAGGCTCCCA 59.783 47.619 0.00 0.00 41.64 4.37 R
2823 4890 1.613925 GTGAAAAACTGGAAGGCTCCC 59.386 52.381 0.00 0.00 41.64 4.30 R
3896 5973 0.453390 GAAGGCGCAGAAATGGAAGG 59.547 55.000 10.83 0.00 0.00 3.46 R
5596 8248 4.843728 TGACCATCTCCAAGGTTCATTAC 58.156 43.478 0.00 0.00 38.50 1.89 R
5745 8397 0.950836 CATCACGGAACAAGCCAACA 59.049 50.000 0.00 0.00 0.00 3.33 R
5901 8554 1.757682 TTTCGCCACCACTTTCACTT 58.242 45.000 0.00 0.00 0.00 3.16 R
7017 9761 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 R
7196 9942 0.809385 TCCTTCTCGTACCGCTTCTG 59.191 55.000 0.00 0.00 0.00 3.02 R
7915 12543 0.246086 CTGCTTCTCACCGCTCTCTT 59.754 55.000 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 3.569210 CACCAGGCCACTCACCCA 61.569 66.667 5.01 0.00 0.00 4.51
104 119 5.066968 TGTTCTTCAGTTTGGTTTGTTCC 57.933 39.130 0.00 0.00 0.00 3.62
115 130 8.015087 CAGTTTGGTTTGTTCCTTTTCTTTTTC 58.985 33.333 0.00 0.00 0.00 2.29
121 138 7.820386 GGTTTGTTCCTTTTCTTTTTCCTTGTA 59.180 33.333 0.00 0.00 0.00 2.41
122 139 8.653338 GTTTGTTCCTTTTCTTTTTCCTTGTAC 58.347 33.333 0.00 0.00 0.00 2.90
123 140 6.869695 TGTTCCTTTTCTTTTTCCTTGTACC 58.130 36.000 0.00 0.00 0.00 3.34
130 147 8.996024 TTTTCTTTTTCCTTGTACCTTTTCTG 57.004 30.769 0.00 0.00 0.00 3.02
131 148 6.144078 TCTTTTTCCTTGTACCTTTTCTGC 57.856 37.500 0.00 0.00 0.00 4.26
170 187 9.661187 TTAATACGCGTTCTTTAAAATTTGTGA 57.339 25.926 20.78 0.00 0.00 3.58
172 189 6.250756 ACGCGTTCTTTAAAATTTGTGAAC 57.749 33.333 5.58 12.10 0.00 3.18
332 410 7.777425 GTTCGATGAACTTCTTTTTCAAATGG 58.223 34.615 2.54 0.00 39.23 3.16
335 413 7.809331 TCGATGAACTTCTTTTTCAAATGGATG 59.191 33.333 0.00 0.00 36.57 3.51
344 651 3.280197 TTCAAATGGATGGATCGAGCA 57.720 42.857 1.84 0.00 0.00 4.26
356 663 2.125952 CGAGCACTCGCCACATGA 60.126 61.111 7.18 0.00 46.50 3.07
359 666 2.435586 GCACTCGCCACATGAGCT 60.436 61.111 0.00 0.00 36.94 4.09
407 714 4.823276 CTTAGAGAGCTGGTGCCG 57.177 61.111 0.00 0.00 40.80 5.69
409 1577 0.179124 CTTAGAGAGCTGGTGCCGAC 60.179 60.000 0.00 0.00 40.80 4.79
413 1581 0.884704 GAGAGCTGGTGCCGACAAAA 60.885 55.000 0.00 0.00 40.80 2.44
415 1583 0.040067 GAGCTGGTGCCGACAAAAAG 60.040 55.000 0.00 0.00 40.80 2.27
420 1588 3.516615 CTGGTGCCGACAAAAAGAAAAA 58.483 40.909 0.00 0.00 0.00 1.94
424 1592 4.627900 GGTGCCGACAAAAAGAAAAAGAAA 59.372 37.500 0.00 0.00 0.00 2.52
431 1599 7.955324 CCGACAAAAAGAAAAAGAAAGAAAACC 59.045 33.333 0.00 0.00 0.00 3.27
433 1601 9.594038 GACAAAAAGAAAAAGAAAGAAAACCAC 57.406 29.630 0.00 0.00 0.00 4.16
435 1603 9.811655 CAAAAAGAAAAAGAAAGAAAACCACTC 57.188 29.630 0.00 0.00 0.00 3.51
437 1605 6.222038 AGAAAAAGAAAGAAAACCACTCCC 57.778 37.500 0.00 0.00 0.00 4.30
439 1607 1.605753 AGAAAGAAAACCACTCCCGC 58.394 50.000 0.00 0.00 0.00 6.13
440 1608 0.237498 GAAAGAAAACCACTCCCGCG 59.763 55.000 0.00 0.00 0.00 6.46
442 1610 2.031465 GAAAACCACTCCCGCGGA 59.969 61.111 30.73 12.25 0.00 5.54
443 1611 1.598685 GAAAACCACTCCCGCGGAA 60.599 57.895 30.73 4.60 0.00 4.30
444 1612 1.848932 GAAAACCACTCCCGCGGAAC 61.849 60.000 30.73 1.10 0.00 3.62
445 1613 3.837570 AAACCACTCCCGCGGAACC 62.838 63.158 30.73 0.00 0.00 3.62
448 1616 3.691342 CACTCCCGCGGAACCTGA 61.691 66.667 30.73 14.30 0.00 3.86
449 1617 2.920912 ACTCCCGCGGAACCTGAA 60.921 61.111 30.73 1.37 0.00 3.02
450 1618 2.291043 ACTCCCGCGGAACCTGAAT 61.291 57.895 30.73 0.36 0.00 2.57
451 1619 1.078426 CTCCCGCGGAACCTGAATT 60.078 57.895 30.73 0.00 0.00 2.17
452 1620 1.369091 CTCCCGCGGAACCTGAATTG 61.369 60.000 30.73 5.39 0.00 2.32
453 1621 2.406616 CCCGCGGAACCTGAATTGG 61.407 63.158 30.73 0.00 0.00 3.16
455 1623 2.406616 CGCGGAACCTGAATTGGGG 61.407 63.158 0.00 0.00 0.00 4.96
456 1624 1.304134 GCGGAACCTGAATTGGGGT 60.304 57.895 0.00 0.00 37.44 4.95
457 1625 1.595093 GCGGAACCTGAATTGGGGTG 61.595 60.000 0.36 0.00 35.81 4.61
458 1626 0.965363 CGGAACCTGAATTGGGGTGG 60.965 60.000 0.36 0.00 35.81 4.61
459 1627 1.257750 GGAACCTGAATTGGGGTGGC 61.258 60.000 0.36 0.00 35.81 5.01
460 1628 1.229177 AACCTGAATTGGGGTGGCC 60.229 57.895 0.00 0.00 35.81 5.36
461 1629 2.364186 CCTGAATTGGGGTGGCCC 60.364 66.667 0.00 0.00 44.51 5.80
470 1638 4.052518 GGGTGGCCCAGAGCACAT 62.053 66.667 0.00 0.00 44.65 3.21
472 1640 2.048603 GGTGGCCCAGAGCACATTC 61.049 63.158 0.00 0.00 46.50 2.67
473 1641 1.001641 GTGGCCCAGAGCACATTCT 60.002 57.895 0.00 0.00 46.50 2.40
475 1643 0.112995 TGGCCCAGAGCACATTCTTT 59.887 50.000 0.00 0.00 46.50 2.52
476 1644 0.529378 GGCCCAGAGCACATTCTTTG 59.471 55.000 0.00 0.00 46.50 2.77
477 1645 1.538047 GCCCAGAGCACATTCTTTGA 58.462 50.000 0.00 0.00 42.97 2.69
478 1646 2.097825 GCCCAGAGCACATTCTTTGAT 58.902 47.619 0.00 0.00 42.97 2.57
479 1647 3.282021 GCCCAGAGCACATTCTTTGATA 58.718 45.455 0.00 0.00 42.97 2.15
480 1648 3.065925 GCCCAGAGCACATTCTTTGATAC 59.934 47.826 0.00 0.00 42.97 2.24
481 1649 4.264253 CCCAGAGCACATTCTTTGATACA 58.736 43.478 0.00 0.00 0.00 2.29
483 1651 5.359009 CCCAGAGCACATTCTTTGATACATT 59.641 40.000 0.00 0.00 0.00 2.71
484 1652 6.127535 CCCAGAGCACATTCTTTGATACATTT 60.128 38.462 0.00 0.00 0.00 2.32
486 1654 7.362315 CCAGAGCACATTCTTTGATACATTTCA 60.362 37.037 0.00 0.00 0.00 2.69
487 1655 8.024865 CAGAGCACATTCTTTGATACATTTCAA 58.975 33.333 0.00 0.00 33.89 2.69
488 1656 8.746530 AGAGCACATTCTTTGATACATTTCAAT 58.253 29.630 0.00 0.00 35.64 2.57
492 1874 7.762615 CACATTCTTTGATACATTTCAATGGCT 59.237 33.333 4.58 0.00 40.70 4.75
507 1889 3.819564 ATGGCTTGTAATACGCAGAGA 57.180 42.857 0.00 0.00 0.00 3.10
515 1897 3.678072 TGTAATACGCAGAGAAAGCACAC 59.322 43.478 0.00 0.00 0.00 3.82
594 1977 4.090057 GCTCGGTTGACGCTTGGC 62.090 66.667 0.00 0.00 43.86 4.52
610 1993 3.445096 GCTTGGCAGTCTCCATGTTTTAT 59.555 43.478 0.00 0.00 35.77 1.40
612 1995 5.300286 GCTTGGCAGTCTCCATGTTTTATAT 59.700 40.000 0.00 0.00 35.77 0.86
613 1996 6.183360 GCTTGGCAGTCTCCATGTTTTATATT 60.183 38.462 0.00 0.00 35.77 1.28
614 1997 7.631377 GCTTGGCAGTCTCCATGTTTTATATTT 60.631 37.037 0.00 0.00 35.77 1.40
665 2053 6.713450 AGTAATGGAAACCGTTAACAGATGTT 59.287 34.615 6.39 3.37 36.84 2.71
666 2054 6.399639 AATGGAAACCGTTAACAGATGTTT 57.600 33.333 6.39 8.92 39.31 2.83
872 2293 3.462021 GCGCTTAAGATCAATCACCTCT 58.538 45.455 6.67 0.00 0.00 3.69
873 2294 3.492756 GCGCTTAAGATCAATCACCTCTC 59.507 47.826 6.67 0.00 0.00 3.20
883 2304 1.407936 ATCACCTCTCTCCATCCGTG 58.592 55.000 0.00 0.00 0.00 4.94
1109 2551 4.545706 CGCGCCCCTGCTTCCATA 62.546 66.667 0.00 0.00 34.43 2.74
1319 2775 0.889306 GAGTGCTTGGTAGGAGACGT 59.111 55.000 0.00 0.00 0.00 4.34
1336 2792 0.249398 CGTCTTCCCCTCCGAATTGT 59.751 55.000 0.00 0.00 0.00 2.71
1384 2840 4.042435 TCTGTCGAGGGTTTTAGGGAAATT 59.958 41.667 0.00 0.00 0.00 1.82
1389 2845 4.765339 CGAGGGTTTTAGGGAAATTTCAGT 59.235 41.667 19.49 8.42 0.00 3.41
1391 2847 6.569801 CGAGGGTTTTAGGGAAATTTCAGTTC 60.570 42.308 19.49 6.30 0.00 3.01
1434 2899 5.155278 TGTAGCGAATTGGGACTTTTAGA 57.845 39.130 0.00 0.00 0.00 2.10
1439 2904 5.642491 AGCGAATTGGGACTTTTAGAACTAC 59.358 40.000 0.00 0.00 0.00 2.73
1697 3162 2.322161 CCTTGACTTTCAATGCTTGCG 58.678 47.619 0.00 0.00 35.59 4.85
1711 3176 0.671472 CTTGCGCCAGTCATCACTCA 60.671 55.000 4.18 0.00 0.00 3.41
1821 3292 7.162082 TCCTTCCTTTACTCTTTGAAGATGTC 58.838 38.462 0.00 0.00 35.56 3.06
1888 3359 9.071276 AGTACATTGAGAATCTTGTCATGTTTT 57.929 29.630 0.00 0.00 34.74 2.43
1934 3405 3.630312 TCTTGGTCAGTTTAAAGTGCACC 59.370 43.478 23.77 23.77 33.71 5.01
1987 3458 4.568760 GGAGGAAAGACAATTGAGATCGAC 59.431 45.833 13.59 0.00 0.00 4.20
2177 3648 2.460669 TCTGATGTGAAGAGGCTGCTA 58.539 47.619 0.00 0.00 0.00 3.49
2184 3655 1.003108 GAAGAGGCTGCTAGAAACGC 58.997 55.000 0.00 0.00 0.00 4.84
2235 3706 8.144478 TGACTATCTGAGCACAATATTAGGAAC 58.856 37.037 0.00 0.00 0.00 3.62
2570 4637 4.135306 TCCTAGTCTGTATCGTGTGATCC 58.865 47.826 0.00 0.00 35.99 3.36
2586 4653 5.006746 GTGTGATCCGTATTTGAATCAGGAC 59.993 44.000 0.00 0.00 30.40 3.85
2912 4979 6.260050 GGAATTACCATTAGATGCGTCTCAAA 59.740 38.462 12.83 2.28 38.79 2.69
3062 5131 4.685169 TTCATCATGAACTTCCTTTCGC 57.315 40.909 0.00 0.00 30.26 4.70
3691 5762 1.985159 ACTGTGGGAGGCAATACTTGA 59.015 47.619 0.00 0.00 0.00 3.02
3896 5973 1.321743 CGATACGCTGTTGAGCTTCAC 59.678 52.381 0.00 0.00 43.77 3.18
4015 6092 3.867857 TCTATTTTATGGCGTGCACAGA 58.132 40.909 18.64 4.86 0.00 3.41
4278 6392 2.956333 TCTCTGACAGTTTGAGACGGAA 59.044 45.455 1.59 0.00 32.63 4.30
4937 7586 9.717942 AGCAGTTATGACATATTCTCCTTTATC 57.282 33.333 0.00 0.00 0.00 1.75
5266 7918 3.124466 TCCGTTCATGCATTACTGAAACG 59.876 43.478 0.00 6.83 33.45 3.60
5596 8248 2.958355 TCAAGTGGAAAGGGCTTGAAAG 59.042 45.455 4.04 0.00 43.56 2.62
5745 8397 5.774690 TGATGAAGAGGTACATTGCCTTTTT 59.225 36.000 0.00 0.00 36.29 1.94
5759 8412 2.200899 CCTTTTTGTTGGCTTGTTCCG 58.799 47.619 0.00 0.00 0.00 4.30
5796 8449 9.679661 TTGTGAATCTTATTACTAAGCCATTGA 57.320 29.630 0.00 0.00 35.32 2.57
5901 8554 1.065199 GGTGGTGAGGAATCAGATGCA 60.065 52.381 0.00 0.00 0.00 3.96
5989 8642 6.035866 GTGAAGTCAACTCTGCTAATGATCTG 59.964 42.308 0.00 0.00 0.00 2.90
5995 8650 4.511527 ACTCTGCTAATGATCTGTTGGTG 58.488 43.478 0.00 0.00 0.00 4.17
5996 8651 4.019860 ACTCTGCTAATGATCTGTTGGTGT 60.020 41.667 0.00 0.00 0.00 4.16
6003 8658 8.584157 TGCTAATGATCTGTTGGTGTTTATTTT 58.416 29.630 0.00 0.00 0.00 1.82
6007 8662 9.696917 AATGATCTGTTGGTGTTTATTTTTCTC 57.303 29.630 0.00 0.00 0.00 2.87
6143 8798 2.615493 GGATGGCGAAGGTTCAGAGAAA 60.615 50.000 0.00 0.00 0.00 2.52
6258 8913 5.661458 ACTATGACCAGTTATCCGAAACAG 58.339 41.667 0.00 0.00 0.00 3.16
6304 8962 6.890814 AGTACCTCCGTCCCATAATATAAGAG 59.109 42.308 0.00 0.00 0.00 2.85
6305 8963 4.466726 ACCTCCGTCCCATAATATAAGAGC 59.533 45.833 0.00 0.00 0.00 4.09
6306 8964 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
6307 8965 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
6312 8970 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
6314 8972 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
6315 8973 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
6317 8975 7.855904 CCATAATATAAGAGCGTTTTTGACACC 59.144 37.037 0.00 0.00 0.00 4.16
6320 8978 1.745232 AGAGCGTTTTTGACACCACA 58.255 45.000 0.00 0.00 0.00 4.17
6321 8979 1.400494 AGAGCGTTTTTGACACCACAC 59.600 47.619 0.00 0.00 0.00 3.82
6323 8981 2.610374 GAGCGTTTTTGACACCACACTA 59.390 45.455 0.00 0.00 0.00 2.74
6324 8982 2.612212 AGCGTTTTTGACACCACACTAG 59.388 45.455 0.00 0.00 0.00 2.57
6357 9016 4.434520 GCTCTTATATTATGGGACGGAGC 58.565 47.826 0.00 0.00 37.19 4.70
6427 9086 3.921677 TCGCGTAAAGAATCCTGAACTT 58.078 40.909 5.77 0.00 0.00 2.66
6476 9217 6.028146 TGTAGTAATTCGGTAGCACAGAAA 57.972 37.500 6.12 0.00 36.02 2.52
6553 9294 3.760580 AAGAGGTTGTCCTTCAGTGAG 57.239 47.619 0.00 0.00 45.24 3.51
6640 9381 7.442969 TGAACCATGTACACGAAGAGTTTAATT 59.557 33.333 0.00 0.00 31.14 1.40
6643 9384 8.287503 ACCATGTACACGAAGAGTTTAATTTTC 58.712 33.333 0.00 0.00 31.14 2.29
6780 9524 8.515414 GTGTGAGATCTTAAACAAAGGCTTATT 58.485 33.333 0.00 0.00 35.75 1.40
6910 9654 9.608718 ATTCTAAACTACTCCTATATGCTCCTT 57.391 33.333 0.00 0.00 0.00 3.36
6911 9655 8.638629 TCTAAACTACTCCTATATGCTCCTTC 57.361 38.462 0.00 0.00 0.00 3.46
6912 9656 6.673839 AAACTACTCCTATATGCTCCTTCC 57.326 41.667 0.00 0.00 0.00 3.46
6913 9657 5.340891 ACTACTCCTATATGCTCCTTCCA 57.659 43.478 0.00 0.00 0.00 3.53
6914 9658 5.909760 ACTACTCCTATATGCTCCTTCCAT 58.090 41.667 0.00 0.00 0.00 3.41
6915 9659 5.955355 ACTACTCCTATATGCTCCTTCCATC 59.045 44.000 0.00 0.00 0.00 3.51
6916 9660 4.100373 ACTCCTATATGCTCCTTCCATCC 58.900 47.826 0.00 0.00 0.00 3.51
6917 9661 4.202879 ACTCCTATATGCTCCTTCCATCCT 60.203 45.833 0.00 0.00 0.00 3.24
6918 9662 5.016782 ACTCCTATATGCTCCTTCCATCCTA 59.983 44.000 0.00 0.00 0.00 2.94
6919 9663 5.915628 TCCTATATGCTCCTTCCATCCTAA 58.084 41.667 0.00 0.00 0.00 2.69
6920 9664 6.331032 TCCTATATGCTCCTTCCATCCTAAA 58.669 40.000 0.00 0.00 0.00 1.85
6921 9665 6.792473 TCCTATATGCTCCTTCCATCCTAAAA 59.208 38.462 0.00 0.00 0.00 1.52
6922 9666 7.462328 TCCTATATGCTCCTTCCATCCTAAAAT 59.538 37.037 0.00 0.00 0.00 1.82
6923 9667 8.112183 CCTATATGCTCCTTCCATCCTAAAATT 58.888 37.037 0.00 0.00 0.00 1.82
6924 9668 9.171877 CTATATGCTCCTTCCATCCTAAAATTC 57.828 37.037 0.00 0.00 0.00 2.17
6925 9669 5.456921 TGCTCCTTCCATCCTAAAATTCT 57.543 39.130 0.00 0.00 0.00 2.40
6926 9670 5.831103 TGCTCCTTCCATCCTAAAATTCTT 58.169 37.500 0.00 0.00 0.00 2.52
6927 9671 6.969043 TGCTCCTTCCATCCTAAAATTCTTA 58.031 36.000 0.00 0.00 0.00 2.10
6928 9672 7.586349 TGCTCCTTCCATCCTAAAATTCTTAT 58.414 34.615 0.00 0.00 0.00 1.73
6929 9673 7.721399 TGCTCCTTCCATCCTAAAATTCTTATC 59.279 37.037 0.00 0.00 0.00 1.75
6930 9674 7.941790 GCTCCTTCCATCCTAAAATTCTTATCT 59.058 37.037 0.00 0.00 0.00 1.98
6931 9675 9.859152 CTCCTTCCATCCTAAAATTCTTATCTT 57.141 33.333 0.00 0.00 0.00 2.40
6960 9704 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
6961 9705 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
6962 9706 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
6963 9707 8.638873 TGTCTAAATACGGATGTATCAAGTCAT 58.361 33.333 0.00 0.00 40.42 3.06
6964 9708 8.916654 GTCTAAATACGGATGTATCAAGTCATG 58.083 37.037 0.00 0.00 40.42 3.07
6965 9709 8.638873 TCTAAATACGGATGTATCAAGTCATGT 58.361 33.333 0.00 0.00 40.42 3.21
6966 9710 9.261180 CTAAATACGGATGTATCAAGTCATGTT 57.739 33.333 0.00 0.00 40.42 2.71
6967 9711 8.506168 AAATACGGATGTATCAAGTCATGTTT 57.494 30.769 0.00 0.00 40.42 2.83
6968 9712 8.506168 AATACGGATGTATCAAGTCATGTTTT 57.494 30.769 0.00 0.00 40.42 2.43
6969 9713 9.607988 AATACGGATGTATCAAGTCATGTTTTA 57.392 29.630 0.00 0.00 40.42 1.52
6970 9714 7.539712 ACGGATGTATCAAGTCATGTTTTAG 57.460 36.000 0.00 0.00 0.00 1.85
6971 9715 7.103641 ACGGATGTATCAAGTCATGTTTTAGT 58.896 34.615 0.00 0.00 0.00 2.24
6972 9716 8.255206 ACGGATGTATCAAGTCATGTTTTAGTA 58.745 33.333 0.00 0.00 0.00 1.82
6973 9717 9.261180 CGGATGTATCAAGTCATGTTTTAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
6985 9729 9.826574 GTCATGTTTTAGTATTAGGTACATCCA 57.173 33.333 0.00 0.00 39.02 3.41
7000 9744 8.220898 AGGTACATCCATATCTAGTCTAGACA 57.779 38.462 24.44 9.82 36.75 3.41
7001 9745 8.670490 AGGTACATCCATATCTAGTCTAGACAA 58.330 37.037 24.44 10.05 36.75 3.18
7002 9746 9.298250 GGTACATCCATATCTAGTCTAGACAAA 57.702 37.037 24.44 11.23 35.30 2.83
7005 9749 9.821240 ACATCCATATCTAGTCTAGACAAATCT 57.179 33.333 24.44 6.24 37.69 2.40
7014 9758 9.961264 TCTAGTCTAGACAAATCTAAGACAAGA 57.039 33.333 24.44 0.09 36.98 3.02
7022 9766 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
7023 9767 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
7024 9768 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
7025 9769 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
7026 9770 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
7027 9771 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
7028 9772 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
7029 9773 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
7030 9774 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
7031 9775 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
7032 9776 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
7070 9814 3.026694 GTGCCCTAATGCATTTTCCTCT 58.973 45.455 18.75 0.00 44.30 3.69
7105 9851 3.773860 ATCAGTTGCGTTCACAAACAA 57.226 38.095 0.00 0.00 34.93 2.83
7117 9863 6.183360 GCGTTCACAAACAAAAGAAAATCCTT 60.183 34.615 0.00 0.00 34.93 3.36
7138 9884 3.159472 TGTGCTCATGATTTCCTTGCTT 58.841 40.909 0.00 0.00 0.00 3.91
7196 9942 1.739562 CTGCAGTCTCAAGCCGACC 60.740 63.158 5.25 0.00 31.83 4.79
7339 10087 4.402056 TCGAGGAATCTGTAAATCACCC 57.598 45.455 0.00 0.00 0.00 4.61
7379 10127 2.937519 AGACCGAGCATCTGTAGATCA 58.062 47.619 0.00 0.00 30.70 2.92
7403 10151 5.009010 ACCATAGTGCAGTTTGAACAAGAAG 59.991 40.000 12.95 0.00 0.00 2.85
7405 10153 6.238731 CCATAGTGCAGTTTGAACAAGAAGAA 60.239 38.462 12.95 0.00 0.00 2.52
7406 10154 4.986622 AGTGCAGTTTGAACAAGAAGAAC 58.013 39.130 0.00 0.00 0.00 3.01
7407 10155 3.786048 GTGCAGTTTGAACAAGAAGAACG 59.214 43.478 0.00 0.00 0.00 3.95
7408 10156 3.687212 TGCAGTTTGAACAAGAAGAACGA 59.313 39.130 0.00 0.00 0.00 3.85
7409 10157 4.201812 TGCAGTTTGAACAAGAAGAACGAG 60.202 41.667 0.00 0.00 0.00 4.18
7410 10158 4.274865 CAGTTTGAACAAGAAGAACGAGC 58.725 43.478 0.00 0.00 0.00 5.03
7411 10159 3.938963 AGTTTGAACAAGAAGAACGAGCA 59.061 39.130 0.00 0.00 0.00 4.26
7412 10160 4.576463 AGTTTGAACAAGAAGAACGAGCAT 59.424 37.500 0.00 0.00 0.00 3.79
7413 10161 4.732285 TTGAACAAGAAGAACGAGCATC 57.268 40.909 0.00 0.00 0.00 3.91
7414 10162 3.995199 TGAACAAGAAGAACGAGCATCT 58.005 40.909 0.00 0.00 0.00 2.90
7415 10163 3.742882 TGAACAAGAAGAACGAGCATCTG 59.257 43.478 0.00 0.00 0.00 2.90
7416 10164 3.393089 ACAAGAAGAACGAGCATCTGT 57.607 42.857 0.00 0.00 0.00 3.41
7417 10165 3.733337 ACAAGAAGAACGAGCATCTGTT 58.267 40.909 0.00 0.00 35.28 3.16
7418 10166 3.496130 ACAAGAAGAACGAGCATCTGTTG 59.504 43.478 0.00 0.00 33.39 3.33
7419 10167 3.667497 AGAAGAACGAGCATCTGTTGA 57.333 42.857 0.00 0.00 33.39 3.18
7420 10168 4.199432 AGAAGAACGAGCATCTGTTGAT 57.801 40.909 0.00 0.00 33.39 2.57
7421 10169 4.180057 AGAAGAACGAGCATCTGTTGATC 58.820 43.478 0.00 0.00 37.40 2.92
7429 10177 3.388308 AGCATCTGTTGATCGTCATAGC 58.612 45.455 0.00 0.00 0.00 2.97
7430 10178 2.154580 GCATCTGTTGATCGTCATAGCG 59.845 50.000 0.00 0.00 0.00 4.26
7431 10179 1.840181 TCTGTTGATCGTCATAGCGC 58.160 50.000 0.00 0.00 0.00 5.92
7432 10180 1.134175 TCTGTTGATCGTCATAGCGCA 59.866 47.619 11.47 0.00 0.00 6.09
7433 10181 1.520174 CTGTTGATCGTCATAGCGCAG 59.480 52.381 11.47 0.00 0.00 5.18
7434 10182 1.135112 TGTTGATCGTCATAGCGCAGT 60.135 47.619 11.47 0.00 0.00 4.40
7435 10183 1.927174 GTTGATCGTCATAGCGCAGTT 59.073 47.619 11.47 0.00 0.00 3.16
7436 10184 2.293677 TGATCGTCATAGCGCAGTTT 57.706 45.000 11.47 0.00 0.00 2.66
7437 10185 1.926510 TGATCGTCATAGCGCAGTTTG 59.073 47.619 11.47 0.84 0.00 2.93
7438 10186 2.193447 GATCGTCATAGCGCAGTTTGA 58.807 47.619 11.47 3.63 0.00 2.69
7439 10187 2.073117 TCGTCATAGCGCAGTTTGAA 57.927 45.000 11.47 0.00 0.00 2.69
7440 10188 1.992667 TCGTCATAGCGCAGTTTGAAG 59.007 47.619 11.47 9.14 0.00 3.02
7441 10189 1.992667 CGTCATAGCGCAGTTTGAAGA 59.007 47.619 11.47 0.00 0.00 2.87
7442 10190 2.411748 CGTCATAGCGCAGTTTGAAGAA 59.588 45.455 11.47 0.00 0.00 2.52
7443 10191 3.482598 CGTCATAGCGCAGTTTGAAGAAG 60.483 47.826 11.47 0.00 0.00 2.85
7444 10192 3.679980 GTCATAGCGCAGTTTGAAGAAGA 59.320 43.478 11.47 0.00 0.00 2.87
7445 10193 4.152402 GTCATAGCGCAGTTTGAAGAAGAA 59.848 41.667 11.47 0.00 0.00 2.52
7446 10194 4.152402 TCATAGCGCAGTTTGAAGAAGAAC 59.848 41.667 11.47 0.00 0.00 3.01
7447 10195 2.288666 AGCGCAGTTTGAAGAAGAACA 58.711 42.857 11.47 0.00 0.00 3.18
7448 10196 2.032178 AGCGCAGTTTGAAGAAGAACAC 59.968 45.455 11.47 0.00 0.00 3.32
7449 10197 2.629022 CGCAGTTTGAAGAAGAACACG 58.371 47.619 0.00 0.00 0.00 4.49
7521 10269 2.723530 TTTGAGAGGAAGAGGGAGGT 57.276 50.000 0.00 0.00 0.00 3.85
7593 10358 1.281867 CTACCTTTGGTCATGGGCTCA 59.718 52.381 0.00 0.00 37.09 4.26
7623 10388 1.345415 TCCACTCGTTGGGTAAACCTC 59.655 52.381 6.06 0.00 46.92 3.85
7635 10403 3.293337 GGTAAACCTCGGGCCAATTATT 58.707 45.455 4.39 0.00 0.00 1.40
7636 10404 4.463070 GGTAAACCTCGGGCCAATTATTA 58.537 43.478 4.39 0.00 0.00 0.98
7706 12334 6.039493 TGCCGAAAAGTGAAATAAAACTACCA 59.961 34.615 0.00 0.00 0.00 3.25
7737 12365 1.038130 ATCTCACGTTCGCTAGGCCT 61.038 55.000 11.78 11.78 0.00 5.19
7798 12426 3.627577 GCATGAATCATGACGTAGGGTTT 59.372 43.478 25.77 0.00 43.81 3.27
7819 12447 0.893270 TCGCCATGTCACCTTTTGGG 60.893 55.000 0.00 0.00 46.08 4.12
7823 12451 2.597455 CCATGTCACCTTTTGGGAACT 58.403 47.619 0.00 0.00 46.08 3.01
7838 12466 4.230745 GGGAACTGTTTGCTCCCTATAA 57.769 45.455 7.84 0.00 45.45 0.98
7877 12505 0.756903 CTAATACCCACCACCCCTCG 59.243 60.000 0.00 0.00 0.00 4.63
7915 12543 1.275297 TGTTCCCCTATCCATTCCCCA 60.275 52.381 0.00 0.00 0.00 4.96
7922 12550 2.039613 CCTATCCATTCCCCAAGAGAGC 59.960 54.545 0.00 0.00 0.00 4.09
7964 12594 5.859495 TCATGGCGGTAATATTGTCACATA 58.141 37.500 0.00 0.00 0.00 2.29
7965 12595 6.472016 TCATGGCGGTAATATTGTCACATAT 58.528 36.000 0.00 0.00 0.00 1.78
8078 12712 8.465273 AACCCTAGCAGATAATTAATTCAACC 57.535 34.615 3.39 0.00 0.00 3.77
8197 12832 6.022315 ACATTTTTCCAGGACATAATTGGGA 58.978 36.000 0.00 0.00 32.76 4.37
8207 12842 9.182214 CCAGGACATAATTGGGATATGAATTAG 57.818 37.037 0.89 0.00 35.28 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.671850 GCACTTCCCTTCGAACGATGA 60.672 52.381 10.76 0.88 0.00 2.92
59 60 8.205131 ACAAAACAAAGTAGATGTTCGTAAGT 57.795 30.769 0.00 0.00 39.98 2.24
104 119 9.087424 CAGAAAAGGTACAAGGAAAAAGAAAAG 57.913 33.333 0.00 0.00 0.00 2.27
115 130 5.774498 AAAGAAGCAGAAAAGGTACAAGG 57.226 39.130 0.00 0.00 0.00 3.61
147 164 7.858879 AGTTCACAAATTTTAAAGAACGCGTAT 59.141 29.630 14.46 0.26 40.03 3.06
149 166 6.031471 AGTTCACAAATTTTAAAGAACGCGT 58.969 32.000 5.58 5.58 40.03 6.01
150 167 6.490877 AGTTCACAAATTTTAAAGAACGCG 57.509 33.333 3.53 3.53 40.03 6.01
151 168 9.536558 AAAAAGTTCACAAATTTTAAAGAACGC 57.463 25.926 12.39 0.00 40.03 4.84
307 385 7.647715 TCCATTTGAAAAAGAAGTTCATCGAAC 59.352 33.333 5.50 0.00 42.25 3.95
310 388 7.062605 CCATCCATTTGAAAAAGAAGTTCATCG 59.937 37.037 5.50 0.00 35.03 3.84
320 398 5.039333 GCTCGATCCATCCATTTGAAAAAG 58.961 41.667 0.00 0.00 0.00 2.27
325 403 2.171237 AGTGCTCGATCCATCCATTTGA 59.829 45.455 0.00 0.00 0.00 2.69
326 404 2.547211 GAGTGCTCGATCCATCCATTTG 59.453 50.000 0.00 0.00 0.00 2.32
344 651 2.267006 CCAGCTCATGTGGCGAGT 59.733 61.111 0.00 0.00 32.83 4.18
394 701 0.884704 TTTTGTCGGCACCAGCTCTC 60.885 55.000 0.00 0.00 41.70 3.20
399 706 2.861462 TTTCTTTTTGTCGGCACCAG 57.139 45.000 0.00 0.00 0.00 4.00
402 709 5.575218 TCTTTCTTTTTCTTTTTGTCGGCAC 59.425 36.000 0.00 0.00 0.00 5.01
403 710 5.715070 TCTTTCTTTTTCTTTTTGTCGGCA 58.285 33.333 0.00 0.00 0.00 5.69
406 713 8.491950 TGGTTTTCTTTCTTTTTCTTTTTGTCG 58.508 29.630 0.00 0.00 0.00 4.35
407 714 9.594038 GTGGTTTTCTTTCTTTTTCTTTTTGTC 57.406 29.630 0.00 0.00 0.00 3.18
409 1577 9.811655 GAGTGGTTTTCTTTCTTTTTCTTTTTG 57.188 29.630 0.00 0.00 0.00 2.44
413 1581 6.627287 CGGGAGTGGTTTTCTTTCTTTTTCTT 60.627 38.462 0.00 0.00 0.00 2.52
415 1583 5.041287 CGGGAGTGGTTTTCTTTCTTTTTC 58.959 41.667 0.00 0.00 0.00 2.29
420 1588 1.605753 GCGGGAGTGGTTTTCTTTCT 58.394 50.000 0.00 0.00 0.00 2.52
431 1599 2.521958 ATTCAGGTTCCGCGGGAGTG 62.522 60.000 27.83 17.54 40.83 3.51
433 1601 1.078426 AATTCAGGTTCCGCGGGAG 60.078 57.895 27.83 4.75 31.21 4.30
435 1603 2.406616 CCAATTCAGGTTCCGCGGG 61.407 63.158 27.83 8.93 0.00 6.13
437 1605 2.406616 CCCCAATTCAGGTTCCGCG 61.407 63.158 0.00 0.00 0.00 6.46
439 1607 0.965363 CCACCCCAATTCAGGTTCCG 60.965 60.000 0.00 0.00 32.72 4.30
440 1608 1.257750 GCCACCCCAATTCAGGTTCC 61.258 60.000 0.00 0.00 32.72 3.62
442 1610 1.229177 GGCCACCCCAATTCAGGTT 60.229 57.895 0.00 0.00 32.72 3.50
443 1611 2.445155 GGCCACCCCAATTCAGGT 59.555 61.111 0.00 0.00 36.58 4.00
453 1621 3.590466 AATGTGCTCTGGGCCACCC 62.590 63.158 0.00 0.00 45.71 4.61
455 1623 0.610232 AAGAATGTGCTCTGGGCCAC 60.610 55.000 0.00 0.00 40.92 5.01
456 1624 0.112995 AAAGAATGTGCTCTGGGCCA 59.887 50.000 5.85 5.85 40.92 5.36
457 1625 0.529378 CAAAGAATGTGCTCTGGGCC 59.471 55.000 0.00 0.00 40.92 5.80
458 1626 1.538047 TCAAAGAATGTGCTCTGGGC 58.462 50.000 0.00 0.00 42.22 5.36
459 1627 4.264253 TGTATCAAAGAATGTGCTCTGGG 58.736 43.478 0.00 0.00 0.00 4.45
460 1628 6.446781 AATGTATCAAAGAATGTGCTCTGG 57.553 37.500 0.00 0.00 0.00 3.86
461 1629 7.532571 TGAAATGTATCAAAGAATGTGCTCTG 58.467 34.615 0.00 0.00 0.00 3.35
462 1630 7.692460 TGAAATGTATCAAAGAATGTGCTCT 57.308 32.000 0.00 0.00 0.00 4.09
463 1631 8.804743 CATTGAAATGTATCAAAGAATGTGCTC 58.195 33.333 0.00 0.00 42.22 4.26
465 1633 7.464977 GCCATTGAAATGTATCAAAGAATGTGC 60.465 37.037 2.55 0.00 42.22 4.57
467 1635 7.844009 AGCCATTGAAATGTATCAAAGAATGT 58.156 30.769 2.55 0.00 42.22 2.71
468 1636 8.600625 CAAGCCATTGAAATGTATCAAAGAATG 58.399 33.333 2.55 0.00 42.22 2.67
469 1637 8.316214 ACAAGCCATTGAAATGTATCAAAGAAT 58.684 29.630 2.55 0.00 42.22 2.40
470 1638 7.669427 ACAAGCCATTGAAATGTATCAAAGAA 58.331 30.769 2.55 0.00 42.22 2.52
472 1640 8.984891 TTACAAGCCATTGAAATGTATCAAAG 57.015 30.769 2.55 0.00 42.22 2.77
475 1643 8.341903 CGTATTACAAGCCATTGAAATGTATCA 58.658 33.333 2.55 0.00 38.83 2.15
476 1644 7.323656 GCGTATTACAAGCCATTGAAATGTATC 59.676 37.037 2.55 0.00 38.83 2.24
477 1645 7.138736 GCGTATTACAAGCCATTGAAATGTAT 58.861 34.615 2.55 0.00 38.83 2.29
478 1646 6.094186 TGCGTATTACAAGCCATTGAAATGTA 59.906 34.615 2.55 0.00 38.83 2.29
479 1647 5.105957 TGCGTATTACAAGCCATTGAAATGT 60.106 36.000 2.55 0.00 38.83 2.71
480 1648 5.339177 TGCGTATTACAAGCCATTGAAATG 58.661 37.500 0.00 0.00 38.83 2.32
481 1649 5.356751 TCTGCGTATTACAAGCCATTGAAAT 59.643 36.000 0.00 0.00 38.83 2.17
483 1651 4.257731 TCTGCGTATTACAAGCCATTGAA 58.742 39.130 0.00 0.00 38.83 2.69
484 1652 3.867857 TCTGCGTATTACAAGCCATTGA 58.132 40.909 0.00 0.00 38.83 2.57
486 1654 4.137116 TCTCTGCGTATTACAAGCCATT 57.863 40.909 0.00 0.00 0.00 3.16
487 1655 3.819564 TCTCTGCGTATTACAAGCCAT 57.180 42.857 0.00 0.00 0.00 4.40
488 1656 3.603158 TTCTCTGCGTATTACAAGCCA 57.397 42.857 0.00 0.00 0.00 4.75
492 1874 4.151689 GTGTGCTTTCTCTGCGTATTACAA 59.848 41.667 0.00 0.00 0.00 2.41
499 1881 1.221414 GAAGTGTGCTTTCTCTGCGT 58.779 50.000 0.00 0.00 34.61 5.24
507 1889 2.034558 CCAAACCATCGAAGTGTGCTTT 59.965 45.455 4.05 0.00 34.61 3.51
515 1897 1.202222 GCTGCATCCAAACCATCGAAG 60.202 52.381 0.00 0.00 0.00 3.79
883 2304 2.529619 GCTTGCTTCGATCGGCTCC 61.530 63.158 16.41 2.28 0.00 4.70
1070 2506 1.074850 GAGGAAGAGGGAGGAGGGG 60.075 68.421 0.00 0.00 0.00 4.79
1074 2516 2.690452 CGGGAGGAAGAGGGAGGA 59.310 66.667 0.00 0.00 0.00 3.71
1319 2775 2.554344 CCAAACAATTCGGAGGGGAAGA 60.554 50.000 0.00 0.00 0.00 2.87
1336 2792 1.549950 GGGCAGGATCAGGAAACCAAA 60.550 52.381 0.00 0.00 0.00 3.28
1384 2840 1.372997 GCGCCGACAGAGAACTGAA 60.373 57.895 0.00 0.00 46.03 3.02
1389 2845 3.684990 AGCAGCGCCGACAGAGAA 61.685 61.111 2.29 0.00 0.00 2.87
1434 2899 1.677552 CTGCCAACTCCCGGTAGTT 59.322 57.895 6.60 6.60 40.33 2.24
1439 2904 1.750399 CAATCCTGCCAACTCCCGG 60.750 63.158 0.00 0.00 0.00 5.73
1603 3068 0.321830 AAACATTTGCAGCCATGGCC 60.322 50.000 33.14 19.25 43.17 5.36
1697 3162 2.033049 GCATTGATGAGTGATGACTGGC 59.967 50.000 0.00 0.00 30.16 4.85
1711 3176 7.558161 TGAAGATTATCAAAGACGCATTGAT 57.442 32.000 13.33 13.33 46.37 2.57
1888 3359 7.561722 AGATTCTGTACAGGAGCAAGAGTAATA 59.438 37.037 21.20 0.00 0.00 0.98
1934 3405 4.559063 CCATGCGAGCCCTCCAGG 62.559 72.222 0.00 0.00 39.47 4.45
1987 3458 6.728200 TGTCACAGAAGTTAAATCAGCTTTG 58.272 36.000 0.00 0.00 0.00 2.77
2177 3648 3.160545 CGCAAACATTTATCGCGTTTCT 58.839 40.909 5.77 0.00 40.99 2.52
2184 3655 6.228273 AGATCATACCGCAAACATTTATCG 57.772 37.500 0.00 0.00 0.00 2.92
2235 3706 8.706035 CAGGATCAAAATTTTCTGCTAAAACAG 58.294 33.333 0.00 0.00 39.12 3.16
2342 3813 4.948847 ACAGCAAATCAAGAAGGGAAAAC 58.051 39.130 0.00 0.00 0.00 2.43
2562 4629 5.006746 GTCCTGATTCAAATACGGATCACAC 59.993 44.000 0.00 0.00 0.00 3.82
2570 4637 5.550981 CAACTTCGTCCTGATTCAAATACG 58.449 41.667 8.15 8.15 0.00 3.06
2755 4822 5.059161 GGTGATAGCATGATTAAGACAGCA 58.941 41.667 0.00 0.00 0.00 4.41
2820 4887 2.702270 AAAACTGGAAGGCTCCCATT 57.298 45.000 0.00 0.00 41.64 3.16
2821 4888 2.158325 TGAAAAACTGGAAGGCTCCCAT 60.158 45.455 0.00 0.00 41.64 4.00
2822 4889 1.216678 TGAAAAACTGGAAGGCTCCCA 59.783 47.619 0.00 0.00 41.64 4.37
2823 4890 1.613925 GTGAAAAACTGGAAGGCTCCC 59.386 52.381 0.00 0.00 41.64 4.30
2824 4891 2.587522 AGTGAAAAACTGGAAGGCTCC 58.412 47.619 0.00 0.00 42.81 4.70
2898 4965 7.705325 GGTTAGTCTAATTTTGAGACGCATCTA 59.295 37.037 0.00 0.00 46.58 1.98
2912 4979 5.652452 GGCAAACTGGATGGTTAGTCTAATT 59.348 40.000 0.00 0.00 0.00 1.40
3061 5130 4.972875 AGGCTGCTTACATCCTGC 57.027 55.556 0.00 0.00 40.94 4.85
3663 5734 2.388735 TGCCTCCCACAGTATCTACAG 58.611 52.381 0.00 0.00 0.00 2.74
3691 5762 2.305927 CCGGAACCATTATCAGCCCTAT 59.694 50.000 0.00 0.00 0.00 2.57
3896 5973 0.453390 GAAGGCGCAGAAATGGAAGG 59.547 55.000 10.83 0.00 0.00 3.46
4015 6092 8.875803 GCATCAACAATATGAACAACATCAAAT 58.124 29.630 0.00 0.00 40.07 2.32
5596 8248 4.843728 TGACCATCTCCAAGGTTCATTAC 58.156 43.478 0.00 0.00 38.50 1.89
5703 8355 1.187087 CACTGTCCTCACTACTCCCC 58.813 60.000 0.00 0.00 0.00 4.81
5705 8357 3.357203 TCATCACTGTCCTCACTACTCC 58.643 50.000 0.00 0.00 0.00 3.85
5745 8397 0.950836 CATCACGGAACAAGCCAACA 59.049 50.000 0.00 0.00 0.00 3.33
5759 8412 6.674694 ATAAGATTCACAAGTCAGCATCAC 57.325 37.500 0.00 0.00 0.00 3.06
5823 8476 5.072055 TGCAGAACAAAATCTTCATCCTGA 58.928 37.500 0.00 0.00 0.00 3.86
5901 8554 1.757682 TTTCGCCACCACTTTCACTT 58.242 45.000 0.00 0.00 0.00 3.16
5989 8642 9.841880 GATTAGGAGAGAAAAATAAACACCAAC 57.158 33.333 0.00 0.00 0.00 3.77
5995 8650 9.892130 TCTGGAGATTAGGAGAGAAAAATAAAC 57.108 33.333 0.00 0.00 0.00 2.01
6003 8658 5.832221 TGACTTCTGGAGATTAGGAGAGAA 58.168 41.667 0.00 0.00 0.00 2.87
6005 8660 5.243730 GGATGACTTCTGGAGATTAGGAGAG 59.756 48.000 0.00 0.00 0.00 3.20
6007 8662 4.898265 TGGATGACTTCTGGAGATTAGGAG 59.102 45.833 0.00 0.00 0.00 3.69
6143 8798 7.014711 GGATCTTTCTTCTTCTTTGGTTTCCTT 59.985 37.037 0.00 0.00 0.00 3.36
6304 8962 2.353579 ACTAGTGTGGTGTCAAAAACGC 59.646 45.455 0.00 0.00 37.67 4.84
6305 8963 3.935450 CACTAGTGTGGTGTCAAAAACG 58.065 45.455 15.06 0.00 40.33 3.60
6336 8995 4.398358 TCGCTCCGTCCCATAATATAAGAG 59.602 45.833 0.00 0.00 0.00 2.85
6394 9053 5.496133 TCTTTACGCGAAATAGCTCTAGT 57.504 39.130 15.93 0.00 34.40 2.57
6401 9060 6.255887 AGTTCAGGATTCTTTACGCGAAATAG 59.744 38.462 15.93 5.19 0.00 1.73
6427 9086 2.294449 ATCTCCGATCCCGAGAATGA 57.706 50.000 10.37 0.00 38.22 2.57
6579 9320 6.011981 CCCTCCCCTAGTGCCATAATTTATTA 60.012 42.308 0.00 0.00 0.00 0.98
6685 9426 7.673926 AGGAATAATGCTTAACCAAAAAGGAGA 59.326 33.333 0.00 0.00 41.22 3.71
6756 9500 9.346725 CAAATAAGCCTTTGTTTAAGATCTCAC 57.653 33.333 0.00 0.00 35.80 3.51
6766 9510 5.527214 GGAAACAGCAAATAAGCCTTTGTTT 59.473 36.000 3.09 3.09 40.68 2.83
6780 9524 1.321474 CTGAGCCAAGGAAACAGCAA 58.679 50.000 0.00 0.00 0.00 3.91
6899 9643 8.894592 AGAATTTTAGGATGGAAGGAGCATATA 58.105 33.333 0.00 0.00 0.00 0.86
6900 9644 7.763613 AGAATTTTAGGATGGAAGGAGCATAT 58.236 34.615 0.00 0.00 0.00 1.78
6901 9645 7.154191 AGAATTTTAGGATGGAAGGAGCATA 57.846 36.000 0.00 0.00 0.00 3.14
6902 9646 6.023334 AGAATTTTAGGATGGAAGGAGCAT 57.977 37.500 0.00 0.00 0.00 3.79
6903 9647 5.456921 AGAATTTTAGGATGGAAGGAGCA 57.543 39.130 0.00 0.00 0.00 4.26
6904 9648 7.941790 AGATAAGAATTTTAGGATGGAAGGAGC 59.058 37.037 0.00 0.00 0.00 4.70
6905 9649 9.859152 AAGATAAGAATTTTAGGATGGAAGGAG 57.141 33.333 0.00 0.00 0.00 3.69
6934 9678 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
6935 9679 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
6936 9680 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
6937 9681 8.002984 TGACTTGATACATCCGTATTTAGACA 57.997 34.615 0.00 0.00 38.48 3.41
6938 9682 8.916654 CATGACTTGATACATCCGTATTTAGAC 58.083 37.037 0.00 0.00 38.48 2.59
6939 9683 8.638873 ACATGACTTGATACATCCGTATTTAGA 58.361 33.333 0.00 0.00 38.48 2.10
6940 9684 8.818141 ACATGACTTGATACATCCGTATTTAG 57.182 34.615 0.00 0.00 38.48 1.85
6941 9685 9.607988 AAACATGACTTGATACATCCGTATTTA 57.392 29.630 0.00 0.00 38.48 1.40
6942 9686 8.506168 AAACATGACTTGATACATCCGTATTT 57.494 30.769 0.00 0.00 38.48 1.40
6943 9687 8.506168 AAAACATGACTTGATACATCCGTATT 57.494 30.769 0.00 0.00 38.48 1.89
6944 9688 9.261180 CTAAAACATGACTTGATACATCCGTAT 57.739 33.333 0.00 0.00 41.16 3.06
6945 9689 8.255206 ACTAAAACATGACTTGATACATCCGTA 58.745 33.333 0.00 0.00 0.00 4.02
6946 9690 7.103641 ACTAAAACATGACTTGATACATCCGT 58.896 34.615 0.00 0.00 0.00 4.69
6947 9691 7.539712 ACTAAAACATGACTTGATACATCCG 57.460 36.000 0.00 0.00 0.00 4.18
6959 9703 9.826574 TGGATGTACCTAATACTAAAACATGAC 57.173 33.333 0.00 0.00 39.86 3.06
6974 9718 9.335211 TGTCTAGACTAGATATGGATGTACCTA 57.665 37.037 23.01 0.00 37.13 3.08
6975 9719 8.220898 TGTCTAGACTAGATATGGATGTACCT 57.779 38.462 23.01 0.00 37.13 3.08
6976 9720 8.865420 TTGTCTAGACTAGATATGGATGTACC 57.135 38.462 23.01 0.00 37.13 3.34
6979 9723 9.821240 AGATTTGTCTAGACTAGATATGGATGT 57.179 33.333 23.01 1.25 37.13 3.06
6988 9732 9.961264 TCTTGTCTTAGATTTGTCTAGACTAGA 57.039 33.333 23.01 8.17 34.48 2.43
6996 9740 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
6997 9741 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
6998 9742 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
6999 9743 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
7000 9744 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
7001 9745 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
7002 9746 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
7003 9747 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
7004 9748 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
7005 9749 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
7006 9750 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
7007 9751 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
7008 9752 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
7009 9753 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
7010 9754 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
7011 9755 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
7012 9756 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
7013 9757 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
7014 9758 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
7015 9759 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
7016 9760 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
7017 9761 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
7018 9762 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
7019 9763 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
7020 9764 2.158490 AGAATAGTACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 0.00 4.46
7021 9765 3.148412 GAGAATAGTACTCCCTCCGTCC 58.852 54.545 0.00 0.00 0.00 4.79
7022 9766 3.148412 GGAGAATAGTACTCCCTCCGTC 58.852 54.545 17.16 1.77 45.64 4.79
7023 9767 3.226682 GGAGAATAGTACTCCCTCCGT 57.773 52.381 17.16 0.00 45.64 4.69
7030 9774 5.221130 GGCACATAACGGAGAATAGTACTC 58.779 45.833 0.00 0.00 0.00 2.59
7031 9775 4.038883 GGGCACATAACGGAGAATAGTACT 59.961 45.833 0.00 0.00 0.00 2.73
7032 9776 4.038883 AGGGCACATAACGGAGAATAGTAC 59.961 45.833 0.00 0.00 0.00 2.73
7070 9814 3.497297 ACTGATATGTTACACGTGCGA 57.503 42.857 17.22 0.00 0.00 5.10
7105 9851 6.600882 ATCATGAGCACAAGGATTTTCTTT 57.399 33.333 0.09 0.00 0.00 2.52
7117 9863 2.799017 AGCAAGGAAATCATGAGCACA 58.201 42.857 0.09 0.00 0.00 4.57
7138 9884 1.300963 GGCTGCTCATGACAGGGAA 59.699 57.895 19.97 0.00 35.62 3.97
7196 9942 0.809385 TCCTTCTCGTACCGCTTCTG 59.191 55.000 0.00 0.00 0.00 3.02
7311 10059 2.568696 ACAGATTCCTCGATCGTGTG 57.431 50.000 15.94 8.88 0.00 3.82
7339 10087 4.214332 GTCTTCTTGTTCAAACTGCCCTAG 59.786 45.833 0.00 0.00 0.00 3.02
7379 10127 4.460263 TCTTGTTCAAACTGCACTATGGT 58.540 39.130 0.00 0.00 0.00 3.55
7403 10151 2.986842 CGATCAACAGATGCTCGTTC 57.013 50.000 0.00 0.00 41.50 3.95
7407 10155 3.428198 GCTATGACGATCAACAGATGCTC 59.572 47.826 0.00 0.00 0.00 4.26
7408 10156 3.388308 GCTATGACGATCAACAGATGCT 58.612 45.455 0.00 0.00 0.00 3.79
7409 10157 2.154580 CGCTATGACGATCAACAGATGC 59.845 50.000 0.00 0.00 34.06 3.91
7410 10158 2.154580 GCGCTATGACGATCAACAGATG 59.845 50.000 0.00 0.00 34.06 2.90
7411 10159 2.223805 TGCGCTATGACGATCAACAGAT 60.224 45.455 9.73 0.00 34.06 2.90
7412 10160 1.134175 TGCGCTATGACGATCAACAGA 59.866 47.619 9.73 0.00 34.06 3.41
7413 10161 1.520174 CTGCGCTATGACGATCAACAG 59.480 52.381 9.73 0.00 34.06 3.16
7414 10162 1.135112 ACTGCGCTATGACGATCAACA 60.135 47.619 9.73 0.00 34.06 3.33
7415 10163 1.560923 ACTGCGCTATGACGATCAAC 58.439 50.000 9.73 0.00 34.06 3.18
7416 10164 2.293677 AACTGCGCTATGACGATCAA 57.706 45.000 9.73 0.00 34.06 2.57
7417 10165 1.926510 CAAACTGCGCTATGACGATCA 59.073 47.619 9.73 0.00 34.06 2.92
7418 10166 2.193447 TCAAACTGCGCTATGACGATC 58.807 47.619 9.73 0.00 34.06 3.69
7419 10167 2.293677 TCAAACTGCGCTATGACGAT 57.706 45.000 9.73 0.00 34.06 3.73
7420 10168 1.992667 CTTCAAACTGCGCTATGACGA 59.007 47.619 9.73 0.00 34.06 4.20
7421 10169 1.992667 TCTTCAAACTGCGCTATGACG 59.007 47.619 9.73 5.77 0.00 4.35
7422 10170 3.679980 TCTTCTTCAAACTGCGCTATGAC 59.320 43.478 9.73 0.00 0.00 3.06
7423 10171 3.925379 TCTTCTTCAAACTGCGCTATGA 58.075 40.909 9.73 4.88 0.00 2.15
7424 10172 4.083855 TGTTCTTCTTCAAACTGCGCTATG 60.084 41.667 9.73 2.24 0.00 2.23
7425 10173 4.065088 TGTTCTTCTTCAAACTGCGCTAT 58.935 39.130 9.73 0.00 0.00 2.97
7426 10174 3.247648 GTGTTCTTCTTCAAACTGCGCTA 59.752 43.478 9.73 0.00 0.00 4.26
7427 10175 2.032178 GTGTTCTTCTTCAAACTGCGCT 59.968 45.455 9.73 0.00 0.00 5.92
7428 10176 2.376032 GTGTTCTTCTTCAAACTGCGC 58.624 47.619 0.00 0.00 0.00 6.09
7429 10177 2.629022 CGTGTTCTTCTTCAAACTGCG 58.371 47.619 0.00 0.00 0.00 5.18
7430 10178 2.223249 TGCGTGTTCTTCTTCAAACTGC 60.223 45.455 0.00 0.00 0.00 4.40
7431 10179 3.673746 TGCGTGTTCTTCTTCAAACTG 57.326 42.857 0.00 0.00 0.00 3.16
7432 10180 3.548818 GCATGCGTGTTCTTCTTCAAACT 60.549 43.478 0.00 0.00 0.00 2.66
7433 10181 2.721090 GCATGCGTGTTCTTCTTCAAAC 59.279 45.455 0.00 0.00 0.00 2.93
7434 10182 2.618241 AGCATGCGTGTTCTTCTTCAAA 59.382 40.909 13.01 0.00 0.00 2.69
7435 10183 2.221169 AGCATGCGTGTTCTTCTTCAA 58.779 42.857 13.01 0.00 0.00 2.69
7436 10184 1.882912 AGCATGCGTGTTCTTCTTCA 58.117 45.000 13.01 0.00 0.00 3.02
7437 10185 3.186409 TGTTAGCATGCGTGTTCTTCTTC 59.814 43.478 13.01 0.00 0.00 2.87
7438 10186 3.138304 TGTTAGCATGCGTGTTCTTCTT 58.862 40.909 13.01 0.00 0.00 2.52
7439 10187 2.766313 TGTTAGCATGCGTGTTCTTCT 58.234 42.857 13.01 0.00 0.00 2.85
7440 10188 3.419915 CATGTTAGCATGCGTGTTCTTC 58.580 45.455 13.01 0.00 44.87 2.87
7441 10189 3.476295 CATGTTAGCATGCGTGTTCTT 57.524 42.857 13.01 0.00 44.87 2.52
7548 10312 2.127758 CCGAACGCGTTCACTTGC 60.128 61.111 40.99 21.47 39.46 4.01
7623 10388 8.739039 TCATTTCATTCTATAATAATTGGCCCG 58.261 33.333 0.00 0.00 0.00 6.13
7706 12334 6.757010 AGCGAACGTGAGATAGATAACATTTT 59.243 34.615 0.00 0.00 0.00 1.82
7758 12386 1.381928 GCCCGTCATCCGACTGTCTA 61.382 60.000 6.21 0.00 40.23 2.59
7819 12447 5.354513 GGTTCTTATAGGGAGCAAACAGTTC 59.645 44.000 0.00 0.00 0.00 3.01
7823 12451 4.042311 TGTGGTTCTTATAGGGAGCAAACA 59.958 41.667 0.00 0.00 0.00 2.83
7838 12466 2.365617 AGAGACACGTTCATGTGGTTCT 59.634 45.455 4.22 3.65 44.21 3.01
7877 12505 1.339151 ACAAGAGGAAACGATCAGGGC 60.339 52.381 0.00 0.00 0.00 5.19
7915 12543 0.246086 CTGCTTCTCACCGCTCTCTT 59.754 55.000 0.00 0.00 0.00 2.85
7922 12550 2.266554 GATTGTCTCTGCTTCTCACCG 58.733 52.381 0.00 0.00 0.00 4.94
8078 12712 7.384660 TCATTGAAAAGATTTGATTTGAACCCG 59.615 33.333 0.00 0.00 0.00 5.28
8166 12801 2.299867 GTCCTGGAAAAATGTGCACCAT 59.700 45.455 15.69 5.14 34.36 3.55
8207 12842 5.450550 GCTCCAATTGAAATACTTAGTGGGC 60.451 44.000 7.12 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.