Multiple sequence alignment - TraesCS3D01G113100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G113100 chr3D 100.000 5919 0 0 1 5919 67060553 67066471 0.000000e+00 10931.0
1 TraesCS3D01G113100 chr3D 88.600 500 29 11 1 484 439421737 439422224 3.070000e-162 582.0
2 TraesCS3D01G113100 chr3D 88.235 102 10 1 2754 2853 79555904 79555803 2.900000e-23 121.0
3 TraesCS3D01G113100 chr3D 89.474 95 4 4 1891 1983 263098160 263098250 1.350000e-21 115.0
4 TraesCS3D01G113100 chr3D 78.462 195 25 10 1536 1730 79556561 79556384 1.740000e-20 111.0
5 TraesCS3D01G113100 chr3B 96.056 2282 71 12 1978 4253 111853098 111855366 0.000000e+00 3698.0
6 TraesCS3D01G113100 chr3B 92.471 1275 57 20 586 1837 111851836 111853094 0.000000e+00 1786.0
7 TraesCS3D01G113100 chr3B 94.987 758 27 9 4339 5090 111855419 111856171 0.000000e+00 1179.0
8 TraesCS3D01G113100 chr3B 86.701 391 34 12 5531 5919 111857531 111857905 9.170000e-113 418.0
9 TraesCS3D01G113100 chr3B 89.720 107 8 2 2750 2853 125865141 125865035 3.720000e-27 134.0
10 TraesCS3D01G113100 chr3B 78.571 196 24 10 1536 1730 125877756 125877578 4.850000e-21 113.0
11 TraesCS3D01G113100 chr3B 78.571 196 24 10 1536 1730 125895447 125895269 4.850000e-21 113.0
12 TraesCS3D01G113100 chr3B 100.000 26 0 0 5193 5218 111856474 111856499 1.400000e-01 49.1
13 TraesCS3D01G113100 chr3A 94.041 1678 84 9 2560 4234 78190808 78192472 0.000000e+00 2531.0
14 TraesCS3D01G113100 chr3A 93.942 1007 39 9 822 1823 78189183 78190172 0.000000e+00 1502.0
15 TraesCS3D01G113100 chr3A 93.411 941 41 12 4358 5286 78192468 78193399 0.000000e+00 1375.0
16 TraesCS3D01G113100 chr3A 90.104 576 35 15 1994 2563 78190169 78190728 0.000000e+00 728.0
17 TraesCS3D01G113100 chr3A 91.645 383 14 9 5544 5919 78193723 78194094 1.140000e-141 514.0
18 TraesCS3D01G113100 chr3A 82.282 412 43 21 2458 2853 93572570 93572173 4.420000e-86 329.0
19 TraesCS3D01G113100 chr3A 91.411 163 11 3 5286 5447 78193557 78193717 2.780000e-53 220.0
20 TraesCS3D01G113100 chr3A 100.000 29 0 0 1536 1564 93573117 93573089 3.000000e-03 54.7
21 TraesCS3D01G113100 chr7D 98.214 560 9 1 1 560 553408674 553408116 0.000000e+00 977.0
22 TraesCS3D01G113100 chr7D 80.328 183 17 10 400 573 77495250 77495078 2.900000e-23 121.0
23 TraesCS3D01G113100 chr7D 81.098 164 15 8 400 557 147589878 147590031 3.750000e-22 117.0
24 TraesCS3D01G113100 chr7D 95.652 46 2 0 5496 5541 60693417 60693372 2.290000e-09 75.0
25 TraesCS3D01G113100 chr7D 100.000 29 0 0 1839 1867 75800907 75800879 3.000000e-03 54.7
26 TraesCS3D01G113100 chr2D 97.857 560 10 1 1 560 377265744 377266301 0.000000e+00 966.0
27 TraesCS3D01G113100 chr2D 96.501 543 16 2 1 541 578027789 578027248 0.000000e+00 894.0
28 TraesCS3D01G113100 chr2D 89.362 94 6 3 1891 1980 376700734 376700827 1.350000e-21 115.0
29 TraesCS3D01G113100 chr2D 95.652 46 2 0 5496 5541 171288817 171288772 2.290000e-09 75.0
30 TraesCS3D01G113100 chrUn 96.270 563 16 4 1 560 304754320 304753760 0.000000e+00 918.0
31 TraesCS3D01G113100 chrUn 81.818 110 5 3 5447 5541 85401535 85401644 1.770000e-10 78.7
32 TraesCS3D01G113100 chrUn 81.818 110 5 3 5447 5541 242415590 242415481 1.770000e-10 78.7
33 TraesCS3D01G113100 chrUn 100.000 28 0 0 1840 1867 249173803 249173830 1.100000e-02 52.8
34 TraesCS3D01G113100 chrUn 100.000 28 0 0 1840 1867 304222678 304222705 1.100000e-02 52.8
35 TraesCS3D01G113100 chr1B 90.619 565 39 9 6 560 30223399 30223959 0.000000e+00 737.0
36 TraesCS3D01G113100 chr1B 98.529 136 2 0 4225 4360 102627861 102627726 2.130000e-59 241.0
37 TraesCS3D01G113100 chr1B 95.652 46 2 0 5496 5541 452245206 452245161 2.290000e-09 75.0
38 TraesCS3D01G113100 chr4B 90.603 564 40 8 6 560 672100980 672101539 0.000000e+00 736.0
39 TraesCS3D01G113100 chr4B 95.862 145 4 1 4217 4359 514055746 514055890 3.570000e-57 233.0
40 TraesCS3D01G113100 chr4B 94.000 150 9 0 4219 4368 339478904 339479053 1.660000e-55 228.0
41 TraesCS3D01G113100 chr4B 95.652 46 2 0 5496 5541 89839935 89839980 2.290000e-09 75.0
42 TraesCS3D01G113100 chr4A 91.991 462 29 5 35 490 672526243 672525784 5.000000e-180 641.0
43 TraesCS3D01G113100 chr4A 90.526 95 3 3 1891 1983 691514483 691514393 2.900000e-23 121.0
44 TraesCS3D01G113100 chr5B 84.598 448 58 8 1 440 88734139 88734583 9.110000e-118 435.0
45 TraesCS3D01G113100 chr5B 95.364 151 4 3 4222 4371 533628716 533628864 2.760000e-58 237.0
46 TraesCS3D01G113100 chr5B 90.526 95 3 3 1891 1983 37615013 37614923 2.900000e-23 121.0
47 TraesCS3D01G113100 chr5B 89.474 95 7 2 1891 1983 17982696 17982603 3.750000e-22 117.0
48 TraesCS3D01G113100 chr5B 91.071 56 3 2 1839 1892 98664859 98664914 2.290000e-09 75.0
49 TraesCS3D01G113100 chr5B 95.455 44 2 0 5448 5491 521158715 521158758 2.960000e-08 71.3
50 TraesCS3D01G113100 chr7B 97.143 140 4 0 4233 4372 489146774 489146913 2.760000e-58 237.0
51 TraesCS3D01G113100 chr7B 95.862 145 4 2 4217 4361 162015861 162016003 3.570000e-57 233.0
52 TraesCS3D01G113100 chr7B 95.862 145 5 1 4222 4366 736367627 736367484 3.570000e-57 233.0
53 TraesCS3D01G113100 chr7B 88.542 96 8 2 1888 1981 115194 115288 4.850000e-21 113.0
54 TraesCS3D01G113100 chr7B 81.250 112 10 2 5440 5541 218545967 218545857 4.920000e-11 80.5
55 TraesCS3D01G113100 chr6B 97.163 141 3 1 4221 4361 716890333 716890472 2.760000e-58 237.0
56 TraesCS3D01G113100 chr6B 94.631 149 7 1 4218 4366 159990653 159990506 4.610000e-56 230.0
57 TraesCS3D01G113100 chr6B 81.818 110 5 1 5447 5541 506128091 506127982 1.770000e-10 78.7
58 TraesCS3D01G113100 chr2A 90.526 95 3 3 1891 1983 610155481 610155571 2.900000e-23 121.0
59 TraesCS3D01G113100 chr2A 90.526 95 3 3 1891 1983 753033676 753033766 2.900000e-23 121.0
60 TraesCS3D01G113100 chr2A 87.629 97 9 3 1891 1984 244313214 244313118 6.270000e-20 110.0
61 TraesCS3D01G113100 chr7A 95.652 46 2 0 5496 5541 634960725 634960770 2.290000e-09 75.0
62 TraesCS3D01G113100 chr6D 86.957 69 6 3 2378 2444 291148589 291148522 2.290000e-09 75.0
63 TraesCS3D01G113100 chr6D 96.875 32 1 0 1836 1867 15700689 15700720 3.000000e-03 54.7
64 TraesCS3D01G113100 chr5A 95.652 46 2 0 5496 5541 606611822 606611777 2.290000e-09 75.0
65 TraesCS3D01G113100 chr1A 95.652 46 2 0 5496 5541 498166925 498166880 2.290000e-09 75.0
66 TraesCS3D01G113100 chr1A 100.000 33 0 0 1836 1868 467257875 467257843 1.780000e-05 62.1
67 TraesCS3D01G113100 chr1A 92.308 39 3 0 534 572 6065513 6065475 8.290000e-04 56.5
68 TraesCS3D01G113100 chr2B 97.059 34 1 0 1834 1867 665189811 665189778 2.300000e-04 58.4
69 TraesCS3D01G113100 chr4D 100.000 30 0 0 1839 1868 213840193 213840222 8.290000e-04 56.5
70 TraesCS3D01G113100 chr6A 100.000 28 0 0 1867 1894 107509440 107509413 1.100000e-02 52.8
71 TraesCS3D01G113100 chr6A 100.000 28 0 0 1840 1867 212052968 212052941 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G113100 chr3D 67060553 67066471 5918 False 10931.00 10931 100.000000 1 5919 1 chr3D.!!$F1 5918
1 TraesCS3D01G113100 chr3B 111851836 111857905 6069 False 1426.02 3698 94.043000 586 5919 5 chr3B.!!$F1 5333
2 TraesCS3D01G113100 chr3A 78189183 78194094 4911 False 1145.00 2531 92.425667 822 5919 6 chr3A.!!$F1 5097
3 TraesCS3D01G113100 chr7D 553408116 553408674 558 True 977.00 977 98.214000 1 560 1 chr7D.!!$R4 559
4 TraesCS3D01G113100 chr2D 377265744 377266301 557 False 966.00 966 97.857000 1 560 1 chr2D.!!$F2 559
5 TraesCS3D01G113100 chr2D 578027248 578027789 541 True 894.00 894 96.501000 1 541 1 chr2D.!!$R2 540
6 TraesCS3D01G113100 chrUn 304753760 304754320 560 True 918.00 918 96.270000 1 560 1 chrUn.!!$R2 559
7 TraesCS3D01G113100 chr1B 30223399 30223959 560 False 737.00 737 90.619000 6 560 1 chr1B.!!$F1 554
8 TraesCS3D01G113100 chr4B 672100980 672101539 559 False 736.00 736 90.603000 6 560 1 chr4B.!!$F4 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 964 0.532573 TCCGCGCAGATCTTTTCTCT 59.467 50.0 8.75 0.00 29.93 3.10 F
1847 1886 2.492088 GGACAGCCAAACAAGTATTCCC 59.508 50.0 0.00 0.00 0.00 3.97 F
2334 2374 1.143969 GATTAACGACGGGGCAGACG 61.144 60.0 0.00 3.16 35.60 4.18 F
4254 4386 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2374 0.323725 TGAATCCAAGCAGGGCCTTC 60.324 55.000 1.32 0.00 38.24 3.46 R
3393 3522 1.271656 AGCAAAGAGGCATCAAACTGC 59.728 47.619 0.00 3.56 41.53 4.40 R
4333 4465 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16 R
5628 6885 0.534873 TCGCAGGTCGGATGAAATGA 59.465 50.000 0.00 0.00 39.05 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
332 341 9.197694 CAAATCATAGTCACCTTAGTACTATGC 57.802 37.037 14.08 0.00 46.60 3.14
564 577 2.168054 GCACGGGCGTTCTATTTGT 58.832 52.632 0.00 0.00 0.00 2.83
565 578 1.361793 GCACGGGCGTTCTATTTGTA 58.638 50.000 0.00 0.00 0.00 2.41
566 579 1.061566 GCACGGGCGTTCTATTTGTAC 59.938 52.381 0.00 0.00 0.00 2.90
567 580 1.322338 CACGGGCGTTCTATTTGTACG 59.678 52.381 0.00 0.00 41.39 3.67
568 581 1.202114 ACGGGCGTTCTATTTGTACGA 59.798 47.619 0.00 0.00 41.04 3.43
569 582 1.850441 CGGGCGTTCTATTTGTACGAG 59.150 52.381 0.00 0.00 41.04 4.18
570 583 2.733227 CGGGCGTTCTATTTGTACGAGT 60.733 50.000 0.00 0.00 41.04 4.18
571 584 3.487376 CGGGCGTTCTATTTGTACGAGTA 60.487 47.826 0.00 0.00 41.04 2.59
572 585 4.040376 GGGCGTTCTATTTGTACGAGTAG 58.960 47.826 6.35 6.35 41.04 2.57
573 586 4.201950 GGGCGTTCTATTTGTACGAGTAGA 60.202 45.833 10.51 10.51 41.04 2.59
574 587 4.968788 GGCGTTCTATTTGTACGAGTAGAG 59.031 45.833 13.39 6.52 41.04 2.43
575 588 4.437171 GCGTTCTATTTGTACGAGTAGAGC 59.563 45.833 15.45 15.45 41.04 4.09
576 589 5.730010 GCGTTCTATTTGTACGAGTAGAGCT 60.730 44.000 20.12 0.00 41.04 4.09
577 590 6.256686 CGTTCTATTTGTACGAGTAGAGCTT 58.743 40.000 20.12 0.00 41.04 3.74
578 591 7.404985 CGTTCTATTTGTACGAGTAGAGCTTA 58.595 38.462 20.12 4.92 41.04 3.09
579 592 8.068977 CGTTCTATTTGTACGAGTAGAGCTTAT 58.931 37.037 20.12 0.00 41.04 1.73
648 661 3.660111 GCCCGCGTGCATTATCCC 61.660 66.667 9.21 0.00 0.00 3.85
652 665 2.591715 GCGTGCATTATCCCGGCT 60.592 61.111 0.00 0.00 0.00 5.52
709 731 4.135153 CACCCGCACTCCTCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
736 760 2.359975 CTCCCCGCACAAACCTCC 60.360 66.667 0.00 0.00 0.00 4.30
825 860 4.704103 ACGGAGCTCCAGCCTCCA 62.704 66.667 31.67 0.00 43.38 3.86
856 891 2.815647 CCCGAGCAGAGCCGAAAC 60.816 66.667 0.00 0.00 0.00 2.78
857 892 2.048222 CCGAGCAGAGCCGAAACA 60.048 61.111 0.00 0.00 0.00 2.83
928 964 0.532573 TCCGCGCAGATCTTTTCTCT 59.467 50.000 8.75 0.00 29.93 3.10
1542 1581 6.778069 TGGATATCGATAAGAGAGGTCAGTTT 59.222 38.462 9.61 0.00 0.00 2.66
1564 1603 3.498018 TGATTGGACGTGTTCATCTGTTG 59.502 43.478 0.00 0.00 0.00 3.33
1685 1724 4.007644 CCCGTGCCTCACTGCTCA 62.008 66.667 0.00 0.00 31.34 4.26
1722 1761 4.717991 TGAAATGTATGCTGTAAACACGC 58.282 39.130 0.00 0.00 0.00 5.34
1723 1762 3.757745 AATGTATGCTGTAAACACGCC 57.242 42.857 0.00 0.00 0.00 5.68
1734 1773 5.726688 GCTGTAAACACGCCATGTATACAAG 60.727 44.000 10.14 5.28 42.31 3.16
1823 1862 4.728021 GCGCTGGTTGTCTTATTCTTAAGC 60.728 45.833 0.00 0.00 35.72 3.09
1829 1868 6.374333 TGGTTGTCTTATTCTTAAGCATGGAC 59.626 38.462 12.42 12.42 35.72 4.02
1846 1885 3.153919 TGGACAGCCAAACAAGTATTCC 58.846 45.455 0.00 0.00 42.49 3.01
1847 1886 2.492088 GGACAGCCAAACAAGTATTCCC 59.508 50.000 0.00 0.00 0.00 3.97
1848 1887 3.421844 GACAGCCAAACAAGTATTCCCT 58.578 45.455 0.00 0.00 0.00 4.20
1849 1888 3.421844 ACAGCCAAACAAGTATTCCCTC 58.578 45.455 0.00 0.00 0.00 4.30
1850 1889 3.074538 ACAGCCAAACAAGTATTCCCTCT 59.925 43.478 0.00 0.00 0.00 3.69
1851 1890 3.441572 CAGCCAAACAAGTATTCCCTCTG 59.558 47.826 0.00 0.00 0.00 3.35
1852 1891 3.074538 AGCCAAACAAGTATTCCCTCTGT 59.925 43.478 0.00 0.00 0.00 3.41
1853 1892 4.288626 AGCCAAACAAGTATTCCCTCTGTA 59.711 41.667 0.00 0.00 0.00 2.74
1854 1893 5.007682 GCCAAACAAGTATTCCCTCTGTAA 58.992 41.667 0.00 0.00 0.00 2.41
1855 1894 5.475564 GCCAAACAAGTATTCCCTCTGTAAA 59.524 40.000 0.00 0.00 0.00 2.01
1856 1895 6.349363 GCCAAACAAGTATTCCCTCTGTAAAG 60.349 42.308 0.00 0.00 0.00 1.85
1857 1896 6.940298 CCAAACAAGTATTCCCTCTGTAAAGA 59.060 38.462 0.00 0.00 0.00 2.52
1858 1897 7.447238 CCAAACAAGTATTCCCTCTGTAAAGAA 59.553 37.037 0.00 0.00 0.00 2.52
1859 1898 8.846211 CAAACAAGTATTCCCTCTGTAAAGAAA 58.154 33.333 0.00 0.00 0.00 2.52
1860 1899 9.588096 AAACAAGTATTCCCTCTGTAAAGAAAT 57.412 29.630 0.00 0.00 0.00 2.17
1899 1938 7.706100 ATCTAAACGATCTTATACTCCCTCC 57.294 40.000 0.00 0.00 0.00 4.30
1900 1939 6.607970 TCTAAACGATCTTATACTCCCTCCA 58.392 40.000 0.00 0.00 0.00 3.86
1901 1940 7.239438 TCTAAACGATCTTATACTCCCTCCAT 58.761 38.462 0.00 0.00 0.00 3.41
1902 1941 8.388589 TCTAAACGATCTTATACTCCCTCCATA 58.611 37.037 0.00 0.00 0.00 2.74
1903 1942 7.850935 AAACGATCTTATACTCCCTCCATAA 57.149 36.000 0.00 0.00 0.00 1.90
1904 1943 7.850935 AACGATCTTATACTCCCTCCATAAA 57.149 36.000 0.00 0.00 0.00 1.40
1905 1944 7.469537 ACGATCTTATACTCCCTCCATAAAG 57.530 40.000 0.00 0.00 0.00 1.85
1906 1945 7.239438 ACGATCTTATACTCCCTCCATAAAGA 58.761 38.462 0.00 0.00 0.00 2.52
1907 1946 7.728981 ACGATCTTATACTCCCTCCATAAAGAA 59.271 37.037 0.00 0.00 0.00 2.52
1908 1947 8.585881 CGATCTTATACTCCCTCCATAAAGAAA 58.414 37.037 0.00 0.00 0.00 2.52
1915 1954 6.122964 ACTCCCTCCATAAAGAAATAACAGC 58.877 40.000 0.00 0.00 0.00 4.40
1916 1955 5.123227 TCCCTCCATAAAGAAATAACAGCG 58.877 41.667 0.00 0.00 0.00 5.18
1917 1956 4.881850 CCCTCCATAAAGAAATAACAGCGT 59.118 41.667 0.00 0.00 0.00 5.07
1918 1957 5.357032 CCCTCCATAAAGAAATAACAGCGTT 59.643 40.000 0.02 0.02 0.00 4.84
1919 1958 6.127730 CCCTCCATAAAGAAATAACAGCGTTT 60.128 38.462 0.00 0.00 0.00 3.60
1920 1959 7.066525 CCCTCCATAAAGAAATAACAGCGTTTA 59.933 37.037 0.00 0.00 0.00 2.01
1921 1960 8.122952 CCTCCATAAAGAAATAACAGCGTTTAG 58.877 37.037 0.00 0.00 0.00 1.85
1922 1961 8.780846 TCCATAAAGAAATAACAGCGTTTAGA 57.219 30.769 0.00 0.00 0.00 2.10
1923 1962 9.391006 TCCATAAAGAAATAACAGCGTTTAGAT 57.609 29.630 0.00 0.00 0.00 1.98
1924 1963 9.651718 CCATAAAGAAATAACAGCGTTTAGATC 57.348 33.333 0.00 0.00 0.00 2.75
1927 1966 7.907214 AAGAAATAACAGCGTTTAGATCACT 57.093 32.000 0.00 0.00 0.00 3.41
1928 1967 8.997621 AAGAAATAACAGCGTTTAGATCACTA 57.002 30.769 0.00 0.00 0.00 2.74
1929 1968 8.997621 AGAAATAACAGCGTTTAGATCACTAA 57.002 30.769 0.00 0.00 36.90 2.24
1930 1969 9.601217 AGAAATAACAGCGTTTAGATCACTAAT 57.399 29.630 0.00 0.00 38.23 1.73
1931 1970 9.851043 GAAATAACAGCGTTTAGATCACTAATC 57.149 33.333 0.00 0.00 38.23 1.75
1932 1971 8.942338 AATAACAGCGTTTAGATCACTAATCA 57.058 30.769 0.00 0.00 38.23 2.57
1933 1972 6.648725 AACAGCGTTTAGATCACTAATCAC 57.351 37.500 0.00 0.00 38.23 3.06
1934 1973 5.967088 ACAGCGTTTAGATCACTAATCACT 58.033 37.500 0.00 0.00 38.23 3.41
1935 1974 7.096884 ACAGCGTTTAGATCACTAATCACTA 57.903 36.000 0.00 0.00 38.23 2.74
1936 1975 7.544622 ACAGCGTTTAGATCACTAATCACTAA 58.455 34.615 0.00 0.00 38.23 2.24
1937 1976 8.033038 ACAGCGTTTAGATCACTAATCACTAAA 58.967 33.333 0.00 0.00 38.23 1.85
1938 1977 8.535592 CAGCGTTTAGATCACTAATCACTAAAG 58.464 37.037 0.00 0.00 38.23 1.85
1939 1978 8.251721 AGCGTTTAGATCACTAATCACTAAAGT 58.748 33.333 0.00 0.00 38.23 2.66
1940 1979 9.512435 GCGTTTAGATCACTAATCACTAAAGTA 57.488 33.333 0.00 0.00 38.23 2.24
1975 2014 9.892130 AACACTCTTATATTTCTTTACAGAGGG 57.108 33.333 0.00 0.00 36.55 4.30
1976 2015 9.268282 ACACTCTTATATTTCTTTACAGAGGGA 57.732 33.333 2.59 0.00 34.50 4.20
1989 2028 4.173290 ACAGAGGGAGTACTAGGTGATC 57.827 50.000 0.00 0.00 0.00 2.92
2001 2040 8.871629 AGTACTAGGTGATCATATAAGACTGG 57.128 38.462 0.00 0.00 0.00 4.00
2174 2214 3.130633 TCAACGCTGTATACATGATGCC 58.869 45.455 5.91 0.00 0.00 4.40
2178 2218 3.133691 CGCTGTATACATGATGCCTTGT 58.866 45.455 5.91 0.00 35.27 3.16
2199 2239 7.862873 CCTTGTTTTTGAGAAACTGAATAGACC 59.137 37.037 0.27 0.00 0.00 3.85
2218 2258 8.905103 ATAGACCGTATTTGTTGTTAAATTGC 57.095 30.769 0.00 0.00 32.79 3.56
2334 2374 1.143969 GATTAACGACGGGGCAGACG 61.144 60.000 0.00 3.16 35.60 4.18
2352 2392 1.379642 CGAAGGCCCTGCTTGGATTC 61.380 60.000 0.00 0.00 38.35 2.52
2383 2423 7.881775 AAATTAGTGTGATCCCTGGTATTTC 57.118 36.000 0.00 0.00 0.00 2.17
2463 2507 3.576648 GCATAACCCTACGCATAGAGTC 58.423 50.000 0.00 0.00 0.00 3.36
2620 2747 8.860780 AGCTCTCTTAATGAAGATTCAGTTTT 57.139 30.769 0.42 0.00 40.95 2.43
2644 2771 3.963383 AGCGAAACAACACACCTTAAG 57.037 42.857 0.00 0.00 0.00 1.85
2645 2772 3.275999 AGCGAAACAACACACCTTAAGT 58.724 40.909 0.97 0.00 0.00 2.24
2651 2778 4.957684 ACAACACACCTTAAGTCTAGCT 57.042 40.909 0.97 0.00 0.00 3.32
2701 2828 6.769512 ACTGTCATGTTAGTTTAGTGGTGAT 58.230 36.000 0.00 0.00 0.00 3.06
2726 2853 2.240667 AGTCTTGCAGAATATGGTGCCT 59.759 45.455 7.01 0.00 39.04 4.75
2874 3002 2.297129 GGCTGGAGGCTGAGGAACT 61.297 63.158 0.00 0.00 41.49 3.01
3152 3280 9.816354 ATAGTTTTATTTATGTTGTTCATGCCC 57.184 29.630 0.00 0.00 37.91 5.36
3161 3289 3.322254 TGTTGTTCATGCCCGGTTTATTT 59.678 39.130 0.00 0.00 0.00 1.40
3162 3290 4.523173 TGTTGTTCATGCCCGGTTTATTTA 59.477 37.500 0.00 0.00 0.00 1.40
3163 3291 5.186021 TGTTGTTCATGCCCGGTTTATTTAT 59.814 36.000 0.00 0.00 0.00 1.40
3164 3292 5.923733 TGTTCATGCCCGGTTTATTTATT 57.076 34.783 0.00 0.00 0.00 1.40
3393 3522 6.479990 TGATCAGTATTACTTCCGCATTTCAG 59.520 38.462 0.00 0.00 0.00 3.02
3485 3614 0.321021 TGGCATGTTTGTTGGGATGC 59.679 50.000 0.00 0.00 40.44 3.91
3546 3675 4.262164 GGCTGAATTTCCACATGTTCTTGT 60.262 41.667 0.00 0.00 0.00 3.16
3818 3948 6.775142 TCATGGTGTTTACATATTGGGTATGG 59.225 38.462 0.00 0.00 43.70 2.74
3832 3962 5.538082 TGGGTATGGGTAGGAAAATTTGA 57.462 39.130 0.00 0.00 0.00 2.69
3937 4069 3.665745 AAAGCTTGTTTGTATGCAGGG 57.334 42.857 0.00 0.00 0.00 4.45
4066 4198 4.459089 GAGGAGGTGCGGACCAGC 62.459 72.222 28.90 18.74 45.98 4.85
4246 4378 1.755179 TTTAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
4247 4379 0.107017 TTAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
4253 4385 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4254 4386 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4257 4389 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4259 4391 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4260 4392 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4261 4393 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4264 4396 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4265 4397 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4268 4400 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
4270 4402 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
4279 4411 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
4280 4412 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
4281 4413 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
4282 4414 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
4283 4415 9.486123 TCATCAAAATGAATAAAAGGGGATGTA 57.514 29.630 0.00 0.00 38.97 2.29
4286 4418 9.713684 TCAAAATGAATAAAAGGGGATGTATCT 57.286 29.630 0.00 0.00 0.00 1.98
4292 4424 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
4322 4454 9.886132 TTAGTTCTAGATACATCCCTTTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
4323 4455 7.339482 AGTTCTAGATACATCCCTTTTTGTCC 58.661 38.462 0.00 0.00 0.00 4.02
4324 4456 6.884472 TCTAGATACATCCCTTTTTGTCCA 57.116 37.500 0.00 0.00 0.00 4.02
4325 4457 7.451731 TCTAGATACATCCCTTTTTGTCCAT 57.548 36.000 0.00 0.00 0.00 3.41
4326 4458 7.872138 TCTAGATACATCCCTTTTTGTCCATT 58.128 34.615 0.00 0.00 0.00 3.16
4327 4459 8.336235 TCTAGATACATCCCTTTTTGTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
4328 4460 7.797121 AGATACATCCCTTTTTGTCCATTTT 57.203 32.000 0.00 0.00 0.00 1.82
4329 4461 7.614494 AGATACATCCCTTTTTGTCCATTTTG 58.386 34.615 0.00 0.00 0.00 2.44
4330 4462 5.885449 ACATCCCTTTTTGTCCATTTTGA 57.115 34.783 0.00 0.00 0.00 2.69
4331 4463 6.438186 ACATCCCTTTTTGTCCATTTTGAT 57.562 33.333 0.00 0.00 0.00 2.57
4332 4464 6.232692 ACATCCCTTTTTGTCCATTTTGATG 58.767 36.000 0.00 0.00 33.80 3.07
4333 4465 6.043012 ACATCCCTTTTTGTCCATTTTGATGA 59.957 34.615 0.00 0.00 32.39 2.92
4334 4466 5.852827 TCCCTTTTTGTCCATTTTGATGAC 58.147 37.500 0.00 0.00 0.00 3.06
4335 4467 5.365025 TCCCTTTTTGTCCATTTTGATGACA 59.635 36.000 0.00 0.00 0.00 3.58
4336 4468 6.054295 CCCTTTTTGTCCATTTTGATGACAA 58.946 36.000 0.00 0.00 34.47 3.18
4337 4469 6.203338 CCCTTTTTGTCCATTTTGATGACAAG 59.797 38.462 0.00 0.00 37.13 3.16
4344 4476 9.474920 TTGTCCATTTTGATGACAAGTATTTTC 57.525 29.630 0.00 0.00 37.32 2.29
4352 4484 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4360 4492 0.038744 TTTCGGACGGAGGGAGTAGT 59.961 55.000 0.00 0.00 0.00 2.73
4361 4493 0.911769 TTCGGACGGAGGGAGTAGTA 59.088 55.000 0.00 0.00 0.00 1.82
4510 4642 4.079253 GGTTGGCTTACATCCTTTTCAGA 58.921 43.478 0.00 0.00 36.26 3.27
4603 4735 6.918022 ACTAAATGCAACAAAAGTACTTCTGC 59.082 34.615 8.95 14.93 0.00 4.26
4608 4740 3.971032 ACAAAAGTACTTCTGCAGCAC 57.029 42.857 9.47 4.19 0.00 4.40
4626 4758 4.692625 CAGCACGCCTATATTATCTGCTTT 59.307 41.667 0.00 0.00 31.15 3.51
4765 4898 6.095440 GGACTAATTATCACATTGTGCAGGTT 59.905 38.462 12.04 7.12 32.98 3.50
4925 5058 1.395954 GACCGTCCCAATAGCGTTTTC 59.604 52.381 0.00 0.00 0.00 2.29
4926 5059 1.270947 ACCGTCCCAATAGCGTTTTCA 60.271 47.619 0.00 0.00 0.00 2.69
4948 5082 7.169158 TCAGGTTTCTTTCTGATTTTGTGTT 57.831 32.000 0.00 0.00 35.37 3.32
5076 5213 9.522804 TTTGTAACTACGCAAAATGAAGAAAAT 57.477 25.926 0.00 0.00 32.46 1.82
5078 5215 8.963130 TGTAACTACGCAAAATGAAGAAAATTG 58.037 29.630 0.00 0.00 0.00 2.32
5079 5216 9.176181 GTAACTACGCAAAATGAAGAAAATTGA 57.824 29.630 0.00 0.00 0.00 2.57
5080 5217 8.816640 AACTACGCAAAATGAAGAAAATTGAT 57.183 26.923 0.00 0.00 0.00 2.57
5081 5218 9.906660 AACTACGCAAAATGAAGAAAATTGATA 57.093 25.926 0.00 0.00 0.00 2.15
5107 5252 4.650131 GGGTGGTAGTAGTTCAATAGCTCT 59.350 45.833 0.00 0.00 0.00 4.09
5148 5293 3.851128 GACTACCCCGGCCTCTGC 61.851 72.222 0.00 0.00 0.00 4.26
5149 5294 4.715130 ACTACCCCGGCCTCTGCA 62.715 66.667 0.00 0.00 40.13 4.41
5175 5320 2.972348 TGGGGAGAGTATGGTCCATAC 58.028 52.381 28.13 28.13 44.81 2.39
5218 5556 4.412796 TGCAAAACATGGTCCATTTGAA 57.587 36.364 17.10 6.78 35.34 2.69
5219 5557 4.774124 TGCAAAACATGGTCCATTTGAAA 58.226 34.783 17.10 4.96 35.34 2.69
5224 5562 8.513774 GCAAAACATGGTCCATTTGAAATATTT 58.486 29.630 17.10 0.00 35.34 1.40
5225 5563 9.828852 CAAAACATGGTCCATTTGAAATATTTG 57.171 29.630 5.17 4.12 35.34 2.32
5266 5604 4.919774 TTTGATTTGACCTAGCAGGGTA 57.080 40.909 7.06 0.00 40.58 3.69
5325 5821 8.861033 TGGTATGTAAACGAGTACACATAATC 57.139 34.615 0.00 7.48 36.83 1.75
5327 5823 9.472361 GGTATGTAAACGAGTACACATAATCAT 57.528 33.333 0.00 0.00 36.83 2.45
5329 5825 7.229228 TGTAAACGAGTACACATAATCATGC 57.771 36.000 0.00 0.00 35.39 4.06
5330 5826 5.389642 AAACGAGTACACATAATCATGCG 57.610 39.130 0.00 0.00 35.39 4.73
5331 5827 4.301637 ACGAGTACACATAATCATGCGA 57.698 40.909 0.00 0.00 35.39 5.10
5332 5828 4.042398 ACGAGTACACATAATCATGCGAC 58.958 43.478 0.00 0.00 35.39 5.19
5334 5830 3.381045 AGTACACATAATCATGCGACCG 58.619 45.455 0.00 0.00 35.39 4.79
5362 5858 7.016268 GGTCTGGGGAGTTGAAATATACAGATA 59.984 40.741 0.00 0.00 35.27 1.98
5398 5894 9.611284 TGATTTCGTAGTTCATTTTTCATTCTG 57.389 29.630 0.00 0.00 0.00 3.02
5404 5900 8.950961 CGTAGTTCATTTTTCATTCTGCATATG 58.049 33.333 0.00 0.00 0.00 1.78
5430 5927 1.155889 GCGAAAAAGGGGCAAAATGG 58.844 50.000 0.00 0.00 0.00 3.16
5431 5928 1.155889 CGAAAAAGGGGCAAAATGGC 58.844 50.000 0.00 0.00 42.88 4.40
5461 5958 5.191522 TGATTTGACATACTCCCTCCATTCA 59.808 40.000 0.00 0.00 0.00 2.57
5462 5959 4.487714 TTGACATACTCCCTCCATTCAC 57.512 45.455 0.00 0.00 0.00 3.18
5463 5960 3.724478 TGACATACTCCCTCCATTCACT 58.276 45.455 0.00 0.00 0.00 3.41
5465 5962 4.536090 TGACATACTCCCTCCATTCACTTT 59.464 41.667 0.00 0.00 0.00 2.66
5471 6108 9.277783 CATACTCCCTCCATTCACTTTTATAAG 57.722 37.037 0.00 0.00 37.40 1.73
5472 6109 7.272144 ACTCCCTCCATTCACTTTTATAAGT 57.728 36.000 0.00 0.00 45.40 2.24
5474 6111 7.611855 ACTCCCTCCATTCACTTTTATAAGTTG 59.388 37.037 0.00 0.00 41.85 3.16
5478 6115 9.626045 CCTCCATTCACTTTTATAAGTTGTTTC 57.374 33.333 0.00 0.00 41.85 2.78
5497 6134 8.633075 TTGTTTCAGACAATTGAAAATGAGTC 57.367 30.769 13.59 0.00 45.62 3.36
5498 6135 7.999679 TGTTTCAGACAATTGAAAATGAGTCT 58.000 30.769 13.59 0.00 45.62 3.24
5505 6142 8.636213 AGACAATTGAAAATGAGTCTGAAATGT 58.364 29.630 13.59 0.00 35.24 2.71
5506 6143 8.807667 ACAATTGAAAATGAGTCTGAAATGTC 57.192 30.769 13.59 0.00 0.00 3.06
5507 6144 8.636213 ACAATTGAAAATGAGTCTGAAATGTCT 58.364 29.630 13.59 0.00 0.00 3.41
5509 6146 9.688592 AATTGAAAATGAGTCTGAAATGTCTTC 57.311 29.630 0.00 0.00 0.00 2.87
5511 6148 8.224389 TGAAAATGAGTCTGAAATGTCTTCAA 57.776 30.769 0.00 0.00 0.00 2.69
5512 6149 8.347771 TGAAAATGAGTCTGAAATGTCTTCAAG 58.652 33.333 0.00 0.00 0.00 3.02
5513 6150 6.814506 AATGAGTCTGAAATGTCTTCAAGG 57.185 37.500 0.00 0.00 0.00 3.61
5514 6151 4.067896 TGAGTCTGAAATGTCTTCAAGGC 58.932 43.478 0.00 0.00 0.00 4.35
5518 6155 5.003804 GTCTGAAATGTCTTCAAGGCCTTA 58.996 41.667 20.00 2.00 0.00 2.69
5519 6156 5.649831 GTCTGAAATGTCTTCAAGGCCTTAT 59.350 40.000 20.00 3.68 0.00 1.73
5520 6157 6.823689 GTCTGAAATGTCTTCAAGGCCTTATA 59.176 38.462 20.00 6.65 0.00 0.98
5521 6158 7.336931 GTCTGAAATGTCTTCAAGGCCTTATAA 59.663 37.037 20.00 14.54 0.00 0.98
5522 6159 7.888021 TCTGAAATGTCTTCAAGGCCTTATAAA 59.112 33.333 20.00 11.96 0.00 1.40
5523 6160 8.055279 TGAAATGTCTTCAAGGCCTTATAAAG 57.945 34.615 20.00 20.40 0.00 1.85
5540 6796 7.769507 CCTTATAAAGGTGAAAAGAGGGAGTAC 59.230 40.741 0.00 0.00 43.95 2.73
5562 6818 4.954875 CCAGGTTCTGGCAAAATTTACAA 58.045 39.130 0.61 0.00 45.13 2.41
5612 6869 8.479280 GCTTGTCATGTAAATTTTGTGTGTAAG 58.521 33.333 0.00 0.00 0.00 2.34
5624 6881 0.246635 TGTGTAAGCGAGAAGGGAGC 59.753 55.000 0.00 0.00 0.00 4.70
5625 6882 0.246635 GTGTAAGCGAGAAGGGAGCA 59.753 55.000 0.00 0.00 0.00 4.26
5626 6883 1.134670 GTGTAAGCGAGAAGGGAGCAT 60.135 52.381 0.00 0.00 0.00 3.79
5627 6884 1.555075 TGTAAGCGAGAAGGGAGCATT 59.445 47.619 0.00 0.00 0.00 3.56
5628 6885 2.027192 TGTAAGCGAGAAGGGAGCATTT 60.027 45.455 0.00 0.00 0.00 2.32
5667 6924 4.095483 GCGAATTCAAGTCCACAGATTGAT 59.905 41.667 6.22 0.00 33.26 2.57
5668 6925 5.392380 GCGAATTCAAGTCCACAGATTGATT 60.392 40.000 6.22 0.00 33.26 2.57
5670 6927 6.128200 CGAATTCAAGTCCACAGATTGATTGA 60.128 38.462 6.22 0.00 33.26 2.57
5671 6928 6.754702 ATTCAAGTCCACAGATTGATTGAG 57.245 37.500 0.00 0.00 33.26 3.02
5672 6929 5.488262 TCAAGTCCACAGATTGATTGAGA 57.512 39.130 0.00 0.00 0.00 3.27
5673 6930 5.485620 TCAAGTCCACAGATTGATTGAGAG 58.514 41.667 0.00 0.00 0.00 3.20
5674 6931 5.012458 TCAAGTCCACAGATTGATTGAGAGT 59.988 40.000 0.00 0.00 0.00 3.24
5676 6933 3.862267 GTCCACAGATTGATTGAGAGTCG 59.138 47.826 0.00 0.00 0.00 4.18
5677 6934 3.511540 TCCACAGATTGATTGAGAGTCGT 59.488 43.478 0.00 0.00 0.00 4.34
5678 6935 3.862267 CCACAGATTGATTGAGAGTCGTC 59.138 47.826 0.00 0.00 0.00 4.20
5679 6936 3.862267 CACAGATTGATTGAGAGTCGTCC 59.138 47.826 0.00 0.00 0.00 4.79
5737 6998 2.380410 CCGGCCAGAAAACGACTCG 61.380 63.158 2.24 0.00 0.00 4.18
5913 7177 0.391597 AACCGCTCTCGAAAAGGACA 59.608 50.000 3.36 0.00 38.10 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
457 467 8.533569 TCTTTTCTTCTCCCAACTAAAAATGT 57.466 30.769 0.00 0.00 0.00 2.71
560 573 7.361127 GCTGATATAAGCTCTACTCGTACAAA 58.639 38.462 4.64 0.00 40.20 2.83
561 574 6.072618 GGCTGATATAAGCTCTACTCGTACAA 60.073 42.308 12.02 0.00 43.06 2.41
562 575 5.411977 GGCTGATATAAGCTCTACTCGTACA 59.588 44.000 12.02 0.00 43.06 2.90
563 576 5.644636 AGGCTGATATAAGCTCTACTCGTAC 59.355 44.000 12.02 0.00 43.06 3.67
564 577 5.644206 CAGGCTGATATAAGCTCTACTCGTA 59.356 44.000 9.42 0.00 43.06 3.43
565 578 4.457603 CAGGCTGATATAAGCTCTACTCGT 59.542 45.833 9.42 0.00 43.06 4.18
566 579 4.674101 GCAGGCTGATATAAGCTCTACTCG 60.674 50.000 20.86 0.00 43.06 4.18
567 580 4.674101 CGCAGGCTGATATAAGCTCTACTC 60.674 50.000 20.86 0.00 43.06 2.59
568 581 3.192422 CGCAGGCTGATATAAGCTCTACT 59.808 47.826 20.86 0.00 43.06 2.57
569 582 3.506810 CGCAGGCTGATATAAGCTCTAC 58.493 50.000 20.86 2.09 43.06 2.59
570 583 2.493675 CCGCAGGCTGATATAAGCTCTA 59.506 50.000 20.86 0.00 46.14 2.43
571 584 1.274728 CCGCAGGCTGATATAAGCTCT 59.725 52.381 20.86 4.81 46.14 4.09
572 585 1.719600 CCGCAGGCTGATATAAGCTC 58.280 55.000 20.86 2.54 46.14 4.09
573 586 3.923354 CCGCAGGCTGATATAAGCT 57.077 52.632 20.86 0.00 46.14 3.74
652 665 2.623094 AATGATTGATGGGCGGCGGA 62.623 55.000 9.78 0.00 0.00 5.54
693 711 4.680537 ACGGAGAGGAGTGCGGGT 62.681 66.667 0.00 0.00 35.25 5.28
725 749 2.877691 GATGCGGGAGGTTTGTGC 59.122 61.111 0.00 0.00 0.00 4.57
732 756 2.126307 CGATAGCGATGCGGGAGG 60.126 66.667 0.00 0.00 40.82 4.30
856 891 2.253452 GCGTGCTCTGTTTGGCTG 59.747 61.111 0.00 0.00 0.00 4.85
857 892 3.349006 CGCGTGCTCTGTTTGGCT 61.349 61.111 0.00 0.00 0.00 4.75
909 945 0.532573 AGAGAAAAGATCTGCGCGGA 59.467 50.000 23.40 23.40 38.96 5.54
973 1012 3.704231 CTGGGAAGGGATGGGTGCG 62.704 68.421 0.00 0.00 0.00 5.34
974 1013 2.276740 CTGGGAAGGGATGGGTGC 59.723 66.667 0.00 0.00 0.00 5.01
976 1015 3.411517 CGCTGGGAAGGGATGGGT 61.412 66.667 0.00 0.00 0.00 4.51
1365 1404 2.811317 GCGAGGAAGTGGAGCACG 60.811 66.667 0.00 0.00 39.64 5.34
1542 1581 3.401033 ACAGATGAACACGTCCAATCA 57.599 42.857 0.00 0.00 0.00 2.57
1685 1724 4.016444 ACATTTCATATCAAGGCACGGTT 58.984 39.130 0.00 0.00 0.00 4.44
1722 1761 3.819368 TCATGGCCACTTGTATACATGG 58.181 45.455 17.74 17.74 37.05 3.66
1723 1762 4.639755 TGTTCATGGCCACTTGTATACATG 59.360 41.667 8.16 15.29 37.60 3.21
1775 1814 7.862372 GCAACTGTAATTACCATACCATGAATG 59.138 37.037 13.01 0.00 0.00 2.67
1823 1862 4.380867 GGAATACTTGTTTGGCTGTCCATG 60.381 45.833 0.00 0.00 43.05 3.66
1829 1868 3.441572 CAGAGGGAATACTTGTTTGGCTG 59.558 47.826 0.00 0.00 0.00 4.85
1875 1914 7.239438 TGGAGGGAGTATAAGATCGTTTAGAT 58.761 38.462 0.00 0.00 43.51 1.98
1876 1915 6.607970 TGGAGGGAGTATAAGATCGTTTAGA 58.392 40.000 0.00 0.00 0.00 2.10
1877 1916 6.896021 TGGAGGGAGTATAAGATCGTTTAG 57.104 41.667 0.00 0.00 0.00 1.85
1878 1917 8.945195 TTATGGAGGGAGTATAAGATCGTTTA 57.055 34.615 0.00 0.00 0.00 2.01
1879 1918 7.850935 TTATGGAGGGAGTATAAGATCGTTT 57.149 36.000 0.00 0.00 0.00 3.60
1880 1919 7.728981 TCTTTATGGAGGGAGTATAAGATCGTT 59.271 37.037 0.00 0.00 0.00 3.85
1881 1920 7.239438 TCTTTATGGAGGGAGTATAAGATCGT 58.761 38.462 0.00 0.00 0.00 3.73
1882 1921 7.704578 TCTTTATGGAGGGAGTATAAGATCG 57.295 40.000 0.00 0.00 0.00 3.69
1889 1928 7.939588 GCTGTTATTTCTTTATGGAGGGAGTAT 59.060 37.037 0.00 0.00 0.00 2.12
1890 1929 7.280356 GCTGTTATTTCTTTATGGAGGGAGTA 58.720 38.462 0.00 0.00 0.00 2.59
1891 1930 6.122964 GCTGTTATTTCTTTATGGAGGGAGT 58.877 40.000 0.00 0.00 0.00 3.85
1892 1931 5.237344 CGCTGTTATTTCTTTATGGAGGGAG 59.763 44.000 0.00 0.00 0.00 4.30
1893 1932 5.123227 CGCTGTTATTTCTTTATGGAGGGA 58.877 41.667 0.00 0.00 0.00 4.20
1894 1933 4.881850 ACGCTGTTATTTCTTTATGGAGGG 59.118 41.667 0.00 0.00 0.00 4.30
1895 1934 6.436843 AACGCTGTTATTTCTTTATGGAGG 57.563 37.500 0.00 0.00 0.00 4.30
1896 1935 8.879759 TCTAAACGCTGTTATTTCTTTATGGAG 58.120 33.333 0.00 0.00 0.00 3.86
1897 1936 8.780846 TCTAAACGCTGTTATTTCTTTATGGA 57.219 30.769 0.00 0.00 0.00 3.41
1898 1937 9.651718 GATCTAAACGCTGTTATTTCTTTATGG 57.348 33.333 0.00 0.00 0.00 2.74
1901 1940 9.431887 AGTGATCTAAACGCTGTTATTTCTTTA 57.568 29.630 0.00 0.00 0.00 1.85
1902 1941 8.324163 AGTGATCTAAACGCTGTTATTTCTTT 57.676 30.769 0.00 0.00 0.00 2.52
1903 1942 7.907214 AGTGATCTAAACGCTGTTATTTCTT 57.093 32.000 0.00 0.00 0.00 2.52
1904 1943 8.997621 TTAGTGATCTAAACGCTGTTATTTCT 57.002 30.769 0.00 0.00 33.79 2.52
1905 1944 9.851043 GATTAGTGATCTAAACGCTGTTATTTC 57.149 33.333 0.00 0.00 39.23 2.17
1906 1945 9.378551 TGATTAGTGATCTAAACGCTGTTATTT 57.621 29.630 0.00 0.00 39.23 1.40
1907 1946 8.818057 GTGATTAGTGATCTAAACGCTGTTATT 58.182 33.333 0.00 0.00 39.23 1.40
1908 1947 8.198109 AGTGATTAGTGATCTAAACGCTGTTAT 58.802 33.333 9.35 0.00 43.22 1.89
1909 1948 7.544622 AGTGATTAGTGATCTAAACGCTGTTA 58.455 34.615 9.35 0.00 43.22 2.41
1910 1949 6.398918 AGTGATTAGTGATCTAAACGCTGTT 58.601 36.000 9.35 0.00 43.22 3.16
1911 1950 5.967088 AGTGATTAGTGATCTAAACGCTGT 58.033 37.500 9.35 0.00 43.22 4.40
1912 1951 7.987268 TTAGTGATTAGTGATCTAAACGCTG 57.013 36.000 15.99 0.00 43.96 5.18
1913 1952 8.251721 ACTTTAGTGATTAGTGATCTAAACGCT 58.748 33.333 12.96 12.96 45.15 5.07
1914 1953 8.408743 ACTTTAGTGATTAGTGATCTAAACGC 57.591 34.615 0.00 0.00 39.23 4.84
1949 1988 9.892130 CCCTCTGTAAAGAAATATAAGAGTGTT 57.108 33.333 0.00 0.00 0.00 3.32
1950 1989 9.268282 TCCCTCTGTAAAGAAATATAAGAGTGT 57.732 33.333 0.00 0.00 0.00 3.55
1951 1990 9.757227 CTCCCTCTGTAAAGAAATATAAGAGTG 57.243 37.037 0.00 0.00 0.00 3.51
1952 1991 9.495382 ACTCCCTCTGTAAAGAAATATAAGAGT 57.505 33.333 0.00 0.00 0.00 3.24
1958 1997 9.369672 CCTAGTACTCCCTCTGTAAAGAAATAT 57.630 37.037 0.00 0.00 0.00 1.28
1959 1998 8.342270 ACCTAGTACTCCCTCTGTAAAGAAATA 58.658 37.037 0.00 0.00 0.00 1.40
1960 1999 7.124448 CACCTAGTACTCCCTCTGTAAAGAAAT 59.876 40.741 0.00 0.00 0.00 2.17
1961 2000 6.436532 CACCTAGTACTCCCTCTGTAAAGAAA 59.563 42.308 0.00 0.00 0.00 2.52
1962 2001 5.950549 CACCTAGTACTCCCTCTGTAAAGAA 59.049 44.000 0.00 0.00 0.00 2.52
1963 2002 5.252397 TCACCTAGTACTCCCTCTGTAAAGA 59.748 44.000 0.00 0.00 0.00 2.52
1964 2003 5.507637 TCACCTAGTACTCCCTCTGTAAAG 58.492 45.833 0.00 0.00 0.00 1.85
1965 2004 5.525454 TCACCTAGTACTCCCTCTGTAAA 57.475 43.478 0.00 0.00 0.00 2.01
1966 2005 5.193124 TGATCACCTAGTACTCCCTCTGTAA 59.807 44.000 0.00 0.00 0.00 2.41
1967 2006 4.725304 TGATCACCTAGTACTCCCTCTGTA 59.275 45.833 0.00 0.00 0.00 2.74
1968 2007 3.528078 TGATCACCTAGTACTCCCTCTGT 59.472 47.826 0.00 0.00 0.00 3.41
1969 2008 4.171878 TGATCACCTAGTACTCCCTCTG 57.828 50.000 0.00 0.00 0.00 3.35
1970 2009 6.728366 ATATGATCACCTAGTACTCCCTCT 57.272 41.667 0.00 0.00 0.00 3.69
1971 2010 8.330247 TCTTATATGATCACCTAGTACTCCCTC 58.670 40.741 0.00 0.00 0.00 4.30
1972 2011 8.110908 GTCTTATATGATCACCTAGTACTCCCT 58.889 40.741 0.00 0.00 0.00 4.20
1973 2012 8.110908 AGTCTTATATGATCACCTAGTACTCCC 58.889 40.741 0.00 0.00 0.00 4.30
1974 2013 8.952278 CAGTCTTATATGATCACCTAGTACTCC 58.048 40.741 0.00 0.00 0.00 3.85
1975 2014 8.952278 CCAGTCTTATATGATCACCTAGTACTC 58.048 40.741 0.00 0.00 0.00 2.59
1976 2015 8.449625 ACCAGTCTTATATGATCACCTAGTACT 58.550 37.037 0.00 0.00 0.00 2.73
1989 2028 5.928839 GCCACATAGTGACCAGTCTTATATG 59.071 44.000 0.00 7.40 35.23 1.78
2001 2040 3.821033 ACTCAAAAAGGCCACATAGTGAC 59.179 43.478 5.01 0.00 35.23 3.67
2174 2214 7.587757 CGGTCTATTCAGTTTCTCAAAAACAAG 59.412 37.037 3.75 0.00 32.81 3.16
2178 2218 8.842358 ATACGGTCTATTCAGTTTCTCAAAAA 57.158 30.769 0.00 0.00 0.00 1.94
2199 2239 7.995998 GTCAACAGCAATTTAACAACAAATACG 59.004 33.333 0.00 0.00 0.00 3.06
2218 2258 4.552166 AAACGGATGTTTCTGTCAACAG 57.448 40.909 3.69 3.69 44.94 3.16
2334 2374 0.323725 TGAATCCAAGCAGGGCCTTC 60.324 55.000 1.32 0.00 38.24 3.46
2352 2392 6.094048 CCAGGGATCACACTAATTTTACACTG 59.906 42.308 0.00 0.00 0.00 3.66
2383 2423 6.307155 CGGTATTTAGTTCAAACTTGAGCTG 58.693 40.000 16.37 0.00 46.21 4.24
2453 2494 5.811588 ACACATATATAGCGACTCTATGCG 58.188 41.667 0.00 0.00 38.41 4.73
2620 2747 1.134340 AGGTGTGTTGTTTCGCTACCA 60.134 47.619 0.00 0.00 0.00 3.25
2644 2771 9.771534 ATATAAGAATGGAAACTCAAGCTAGAC 57.228 33.333 0.00 0.00 0.00 2.59
2692 2819 2.637382 TGCAAGACTGGAATCACCACTA 59.363 45.455 0.00 0.00 44.64 2.74
2726 2853 2.299582 CCACACATCCAAATTGGCAGAA 59.700 45.455 7.24 0.00 37.47 3.02
3101 3229 5.695851 ACACAACAGAATTAAGCCAAGAG 57.304 39.130 0.00 0.00 0.00 2.85
3186 3314 3.500680 GGCGGTCAGTTCTGTTAAAATCA 59.499 43.478 0.00 0.00 0.00 2.57
3393 3522 1.271656 AGCAAAGAGGCATCAAACTGC 59.728 47.619 0.00 3.56 41.53 4.40
3546 3675 5.481122 CCCATCAATCATGCCCATATTAACA 59.519 40.000 0.00 0.00 0.00 2.41
3599 3728 5.468540 GGTTTTCCTTTGCATTCCTAACT 57.531 39.130 0.00 0.00 36.94 2.24
3818 3948 7.941919 ACTCTTGACTTTCAAATTTTCCTACC 58.058 34.615 0.00 0.00 35.73 3.18
3896 4028 3.737559 TCAAGGTTAATCTGTGCCCAT 57.262 42.857 0.00 0.00 0.00 4.00
3937 4069 8.891720 AGATGATTAGAACAGCAGAAATCTTTC 58.108 33.333 0.00 0.00 37.45 2.62
4066 4198 5.472148 TGCAATCAAACAAGCTAGGAAATG 58.528 37.500 0.00 0.00 0.00 2.32
4253 4385 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
4254 4386 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
4257 4389 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
4260 4392 9.713684 AGATACATCCCCTTTTATTCATTTTGA 57.286 29.630 0.00 0.00 0.00 2.69
4274 4406 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
4297 4429 8.483758 GGACAAAAAGGGATGTATCTAGAACTA 58.516 37.037 0.00 0.00 0.00 2.24
4301 4433 6.884472 TGGACAAAAAGGGATGTATCTAGA 57.116 37.500 0.00 0.00 0.00 2.43
4302 4434 8.525290 AAATGGACAAAAAGGGATGTATCTAG 57.475 34.615 0.00 0.00 0.00 2.43
4303 4435 8.748412 CAAAATGGACAAAAAGGGATGTATCTA 58.252 33.333 0.00 0.00 0.00 1.98
4304 4436 7.454380 TCAAAATGGACAAAAAGGGATGTATCT 59.546 33.333 0.00 0.00 0.00 1.98
4305 4437 7.610865 TCAAAATGGACAAAAAGGGATGTATC 58.389 34.615 0.00 0.00 0.00 2.24
4306 4438 7.552050 TCAAAATGGACAAAAAGGGATGTAT 57.448 32.000 0.00 0.00 0.00 2.29
4307 4439 6.985653 TCAAAATGGACAAAAAGGGATGTA 57.014 33.333 0.00 0.00 0.00 2.29
4308 4440 5.885449 TCAAAATGGACAAAAAGGGATGT 57.115 34.783 0.00 0.00 0.00 3.06
4309 4441 6.369615 GTCATCAAAATGGACAAAAAGGGATG 59.630 38.462 0.00 0.00 33.42 3.51
4310 4442 6.043012 TGTCATCAAAATGGACAAAAAGGGAT 59.957 34.615 0.00 0.00 33.42 3.85
4311 4443 5.365025 TGTCATCAAAATGGACAAAAAGGGA 59.635 36.000 0.00 0.00 33.42 4.20
4312 4444 5.609423 TGTCATCAAAATGGACAAAAAGGG 58.391 37.500 0.00 0.00 33.42 3.95
4313 4445 6.762661 ACTTGTCATCAAAATGGACAAAAAGG 59.237 34.615 7.70 0.11 34.98 3.11
4314 4446 7.775397 ACTTGTCATCAAAATGGACAAAAAG 57.225 32.000 7.70 0.11 34.98 2.27
4315 4447 9.829507 AATACTTGTCATCAAAATGGACAAAAA 57.170 25.926 7.70 0.55 34.98 1.94
4316 4448 9.829507 AAATACTTGTCATCAAAATGGACAAAA 57.170 25.926 7.70 0.84 34.98 2.44
4317 4449 9.829507 AAAATACTTGTCATCAAAATGGACAAA 57.170 25.926 7.70 0.00 34.98 2.83
4318 4450 9.474920 GAAAATACTTGTCATCAAAATGGACAA 57.525 29.630 0.00 0.00 34.59 3.18
4319 4451 7.807433 CGAAAATACTTGTCATCAAAATGGACA 59.193 33.333 0.00 0.00 33.42 4.02
4320 4452 7.273381 CCGAAAATACTTGTCATCAAAATGGAC 59.727 37.037 0.00 0.00 33.42 4.02
4321 4453 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4322 4454 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4323 4455 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4324 4456 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4325 4457 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4326 4458 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4327 4459 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4328 4460 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4329 4461 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4330 4462 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
4331 4463 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
4332 4464 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4333 4465 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4334 4466 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4335 4467 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
4336 4468 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
4337 4469 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
4344 4476 0.179936 ACTACTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
4352 4484 6.127793 TCTGAACCTGATAACTACTACTCCC 58.872 44.000 0.00 0.00 0.00 4.30
4360 4492 9.793252 GTTTACGTAATCTGAACCTGATAACTA 57.207 33.333 9.18 0.00 0.00 2.24
4361 4493 8.308931 TGTTTACGTAATCTGAACCTGATAACT 58.691 33.333 9.18 0.00 0.00 2.24
4414 4546 6.110411 ACTTCCGTCTTTCCTGATAGAAAA 57.890 37.500 0.00 0.00 35.41 2.29
4510 4642 3.808618 GCACAGTGACTTCCAGGAAAGAT 60.809 47.826 4.15 0.00 0.00 2.40
4603 4735 3.854666 AGCAGATAATATAGGCGTGCTG 58.145 45.455 0.00 0.00 38.34 4.41
4608 4740 6.425114 AGAACACAAAGCAGATAATATAGGCG 59.575 38.462 0.00 0.00 0.00 5.52
4765 4898 0.665835 GAACCCACACATGAAACGCA 59.334 50.000 0.00 0.00 0.00 5.24
4925 5058 7.165812 CGTAACACAAAATCAGAAAGAAACCTG 59.834 37.037 0.00 0.00 0.00 4.00
4926 5059 7.148137 ACGTAACACAAAATCAGAAAGAAACCT 60.148 33.333 0.00 0.00 0.00 3.50
5012 5146 1.828979 TTACCAGCCATTTTCCCGTC 58.171 50.000 0.00 0.00 0.00 4.79
5072 5209 5.734634 ACTACTACCACCCCCTATCAATTTT 59.265 40.000 0.00 0.00 0.00 1.82
5076 5213 4.264941 TGAACTACTACCACCCCCTATCAA 60.265 45.833 0.00 0.00 0.00 2.57
5078 5215 3.919834 TGAACTACTACCACCCCCTATC 58.080 50.000 0.00 0.00 0.00 2.08
5079 5216 4.357313 TTGAACTACTACCACCCCCTAT 57.643 45.455 0.00 0.00 0.00 2.57
5080 5217 3.850917 TTGAACTACTACCACCCCCTA 57.149 47.619 0.00 0.00 0.00 3.53
5081 5218 2.727429 TTGAACTACTACCACCCCCT 57.273 50.000 0.00 0.00 0.00 4.79
5114 5259 3.686916 AGTCCCCTTTTCGAGAAGAAG 57.313 47.619 16.77 7.75 40.40 2.85
5148 5293 3.947834 GACCATACTCTCCCCATGTTTTG 59.052 47.826 0.00 0.00 0.00 2.44
5149 5294 3.053619 GGACCATACTCTCCCCATGTTTT 60.054 47.826 0.00 0.00 0.00 2.43
5175 5320 5.733373 GCATTATAGAAGCCCTTTTTGACCG 60.733 44.000 0.00 0.00 0.00 4.79
5176 5321 5.127031 TGCATTATAGAAGCCCTTTTTGACC 59.873 40.000 0.00 0.00 0.00 4.02
5218 5556 6.257630 GGACCATTATGCGCAAAACAAATATT 59.742 34.615 17.11 0.00 0.00 1.28
5219 5557 5.752955 GGACCATTATGCGCAAAACAAATAT 59.247 36.000 17.11 0.00 0.00 1.28
5224 5562 1.889170 TGGACCATTATGCGCAAAACA 59.111 42.857 17.11 2.29 0.00 2.83
5225 5563 2.645730 TGGACCATTATGCGCAAAAC 57.354 45.000 17.11 1.73 0.00 2.43
5266 5604 7.112122 TGACACTAGAATATTTGCCAGAACAT 58.888 34.615 0.00 0.00 0.00 2.71
5330 5826 4.716977 ACTCCCCAGACCCCGGTC 62.717 72.222 5.70 5.70 44.86 4.79
5331 5827 4.265507 AACTCCCCAGACCCCGGT 62.266 66.667 0.00 0.00 0.00 5.28
5332 5828 3.717294 CAACTCCCCAGACCCCGG 61.717 72.222 0.00 0.00 0.00 5.73
5334 5830 0.704664 ATTTCAACTCCCCAGACCCC 59.295 55.000 0.00 0.00 0.00 4.95
5362 5858 8.608844 ATGAACTACGAAATCAAAGAACTCTT 57.391 30.769 0.00 0.00 37.91 2.85
5391 5887 4.037923 TCGCAGTAGACATATGCAGAATGA 59.962 41.667 16.46 0.00 39.69 2.57
5398 5894 4.260784 CCCTTTTTCGCAGTAGACATATGC 60.261 45.833 1.58 0.00 36.60 3.14
5404 5900 0.803117 GCCCCTTTTTCGCAGTAGAC 59.197 55.000 0.00 0.00 0.00 2.59
5430 5927 4.142381 GGGAGTATGTCAAATCAAACTGGC 60.142 45.833 0.00 0.00 0.00 4.85
5431 5928 5.256474 AGGGAGTATGTCAAATCAAACTGG 58.744 41.667 0.00 0.00 0.00 4.00
5433 5930 5.014123 TGGAGGGAGTATGTCAAATCAAACT 59.986 40.000 0.00 0.00 0.00 2.66
5483 6120 9.688592 GAAGACATTTCAGACTCATTTTCAATT 57.311 29.630 0.00 0.00 0.00 2.32
5487 6124 7.806960 CCTTGAAGACATTTCAGACTCATTTTC 59.193 37.037 0.00 0.00 0.00 2.29
5490 6127 5.182760 GCCTTGAAGACATTTCAGACTCATT 59.817 40.000 0.00 0.00 0.00 2.57
5491 6128 4.699257 GCCTTGAAGACATTTCAGACTCAT 59.301 41.667 0.00 0.00 0.00 2.90
5492 6129 4.067896 GCCTTGAAGACATTTCAGACTCA 58.932 43.478 0.00 0.00 0.00 3.41
5494 6131 3.073650 AGGCCTTGAAGACATTTCAGACT 59.926 43.478 0.00 0.00 0.00 3.24
5496 6133 3.795688 AGGCCTTGAAGACATTTCAGA 57.204 42.857 0.00 0.00 0.00 3.27
5497 6134 7.630242 TTATAAGGCCTTGAAGACATTTCAG 57.370 36.000 28.77 0.00 0.00 3.02
5498 6135 7.122650 CCTTTATAAGGCCTTGAAGACATTTCA 59.877 37.037 28.77 3.15 42.78 2.69
5499 6136 7.484140 CCTTTATAAGGCCTTGAAGACATTTC 58.516 38.462 28.77 0.00 42.78 2.17
5518 6155 5.550403 TGGTACTCCCTCTTTTCACCTTTAT 59.450 40.000 0.00 0.00 0.00 1.40
5519 6156 4.909088 TGGTACTCCCTCTTTTCACCTTTA 59.091 41.667 0.00 0.00 0.00 1.85
5520 6157 3.720002 TGGTACTCCCTCTTTTCACCTTT 59.280 43.478 0.00 0.00 0.00 3.11
5521 6158 3.323775 TGGTACTCCCTCTTTTCACCTT 58.676 45.455 0.00 0.00 0.00 3.50
5522 6159 2.907042 CTGGTACTCCCTCTTTTCACCT 59.093 50.000 0.00 0.00 0.00 4.00
5523 6160 2.027100 CCTGGTACTCCCTCTTTTCACC 60.027 54.545 0.00 0.00 0.00 4.02
5524 6161 2.638363 ACCTGGTACTCCCTCTTTTCAC 59.362 50.000 0.00 0.00 0.00 3.18
5525 6162 2.986050 ACCTGGTACTCCCTCTTTTCA 58.014 47.619 0.00 0.00 0.00 2.69
5526 6163 3.583526 AGAACCTGGTACTCCCTCTTTTC 59.416 47.826 0.00 0.00 0.00 2.29
5562 6818 8.918116 AGCTCCTTTTCTTTTAGAAAGACAAAT 58.082 29.630 2.79 0.00 44.14 2.32
5578 6834 8.490355 CAAAATTTACATGACAAGCTCCTTTTC 58.510 33.333 0.00 0.00 0.00 2.29
5581 6837 6.925165 CACAAAATTTACATGACAAGCTCCTT 59.075 34.615 0.00 0.00 0.00 3.36
5612 6869 1.673168 ATGAAATGCTCCCTTCTCGC 58.327 50.000 0.00 0.00 0.00 5.03
5624 6881 3.699067 GCAGGTCGGATGAAATGAAATG 58.301 45.455 0.00 0.00 0.00 2.32
5625 6882 2.355756 CGCAGGTCGGATGAAATGAAAT 59.644 45.455 0.00 0.00 33.78 2.17
5626 6883 1.737236 CGCAGGTCGGATGAAATGAAA 59.263 47.619 0.00 0.00 33.78 2.69
5627 6884 1.066502 TCGCAGGTCGGATGAAATGAA 60.067 47.619 0.00 0.00 39.05 2.57
5628 6885 0.534873 TCGCAGGTCGGATGAAATGA 59.465 50.000 0.00 0.00 39.05 2.57
5667 6924 3.386726 TCTTTCCAAAGGACGACTCTCAA 59.613 43.478 0.00 0.00 36.67 3.02
5668 6925 2.963101 TCTTTCCAAAGGACGACTCTCA 59.037 45.455 0.00 0.00 36.67 3.27
5670 6927 2.300437 CCTCTTTCCAAAGGACGACTCT 59.700 50.000 0.00 0.00 36.67 3.24
5671 6928 2.689646 CCTCTTTCCAAAGGACGACTC 58.310 52.381 0.00 0.00 36.67 3.36
5672 6929 1.270893 GCCTCTTTCCAAAGGACGACT 60.271 52.381 0.00 0.00 36.67 4.18
5673 6930 1.157585 GCCTCTTTCCAAAGGACGAC 58.842 55.000 0.00 0.00 36.67 4.34
5674 6931 1.056660 AGCCTCTTTCCAAAGGACGA 58.943 50.000 0.00 0.00 36.67 4.20
5676 6933 1.270826 GCAAGCCTCTTTCCAAAGGAC 59.729 52.381 0.00 0.00 36.67 3.85
5677 6934 1.133513 TGCAAGCCTCTTTCCAAAGGA 60.134 47.619 0.00 0.00 36.67 3.36
5678 6935 1.331214 TGCAAGCCTCTTTCCAAAGG 58.669 50.000 0.00 0.00 36.67 3.11
5679 6936 2.415090 CGATGCAAGCCTCTTTCCAAAG 60.415 50.000 0.00 0.00 37.36 2.77
5725 6986 4.050852 ACAAAGTACCGAGTCGTTTTCT 57.949 40.909 12.31 1.64 0.00 2.52
5737 6998 5.235831 AGCTTTACGAACAGAACAAAGTACC 59.764 40.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.