Multiple sequence alignment - TraesCS3D01G112200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G112200 chr3D 100.000 2687 0 0 1 2687 66352726 66355412 0.000000e+00 4963.0
1 TraesCS3D01G112200 chr3D 91.568 925 60 7 1777 2685 303752944 303753866 0.000000e+00 1260.0
2 TraesCS3D01G112200 chr6D 92.142 929 53 11 1777 2687 315578482 315579408 0.000000e+00 1293.0
3 TraesCS3D01G112200 chr2D 91.685 926 55 15 1777 2685 569019329 569018409 0.000000e+00 1264.0
4 TraesCS3D01G112200 chr6A 91.370 927 60 11 1778 2687 4929431 4930354 0.000000e+00 1251.0
5 TraesCS3D01G112200 chr6A 90.291 927 70 8 1778 2687 52207208 52206285 0.000000e+00 1195.0
6 TraesCS3D01G112200 chr6A 78.348 702 149 3 1040 1739 6430657 6431357 4.080000e-123 451.0
7 TraesCS3D01G112200 chr6A 78.235 170 25 10 179 341 240635840 240635676 6.120000e-17 99.0
8 TraesCS3D01G112200 chr2A 91.450 924 60 11 1778 2687 539809035 539809953 0.000000e+00 1251.0
9 TraesCS3D01G112200 chr2A 75.397 252 53 9 1000 1248 39724103 39723858 2.190000e-21 113.0
10 TraesCS3D01G112200 chr2A 78.704 108 21 2 698 805 102112169 102112064 1.330000e-08 71.3
11 TraesCS3D01G112200 chr7B 91.037 926 64 13 1778 2687 429849512 429848590 0.000000e+00 1232.0
12 TraesCS3D01G112200 chr4A 90.929 926 66 9 1778 2687 95958953 95959876 0.000000e+00 1229.0
13 TraesCS3D01G112200 chr4A 76.119 134 26 3 697 829 576926709 576926837 6.210000e-07 65.8
14 TraesCS3D01G112200 chr1D 90.385 936 62 20 1778 2687 159078653 159079586 0.000000e+00 1205.0
15 TraesCS3D01G112200 chr1D 84.348 115 18 0 690 804 436709642 436709756 2.190000e-21 113.0
16 TraesCS3D01G112200 chr1D 78.947 152 20 10 179 323 149047761 149047907 2.850000e-15 93.5
17 TraesCS3D01G112200 chr1D 77.885 104 13 7 697 794 287481123 287481024 3.740000e-04 56.5
18 TraesCS3D01G112200 chr3B 84.056 853 104 20 1 850 109965601 109966424 0.000000e+00 793.0
19 TraesCS3D01G112200 chr3B 71.141 745 199 15 1041 1775 819274051 819273313 1.280000e-38 171.0
20 TraesCS3D01G112200 chr3B 100.000 30 0 0 766 795 486622913 486622884 3.740000e-04 56.5
21 TraesCS3D01G112200 chr2B 78.331 683 143 5 1066 1745 796084046 796083366 1.140000e-118 436.0
22 TraesCS3D01G112200 chr6B 71.880 665 168 17 1070 1724 478890004 478889349 9.890000e-40 174.0
23 TraesCS3D01G112200 chr6B 70.181 664 187 11 1118 1775 147697180 147696522 4.700000e-23 119.0
24 TraesCS3D01G112200 chr5D 70.694 720 188 21 1067 1775 300935026 300934319 3.610000e-29 139.0
25 TraesCS3D01G112200 chr7D 79.310 145 25 4 1067 1208 634803876 634803734 2.200000e-16 97.1
26 TraesCS3D01G112200 chr1B 80.870 115 17 3 690 804 591509621 591509730 4.770000e-13 86.1
27 TraesCS3D01G112200 chr3A 76.923 117 23 3 690 804 511594326 511594212 2.230000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G112200 chr3D 66352726 66355412 2686 False 4963 4963 100.000 1 2687 1 chr3D.!!$F1 2686
1 TraesCS3D01G112200 chr3D 303752944 303753866 922 False 1260 1260 91.568 1777 2685 1 chr3D.!!$F2 908
2 TraesCS3D01G112200 chr6D 315578482 315579408 926 False 1293 1293 92.142 1777 2687 1 chr6D.!!$F1 910
3 TraesCS3D01G112200 chr2D 569018409 569019329 920 True 1264 1264 91.685 1777 2685 1 chr2D.!!$R1 908
4 TraesCS3D01G112200 chr6A 4929431 4930354 923 False 1251 1251 91.370 1778 2687 1 chr6A.!!$F1 909
5 TraesCS3D01G112200 chr6A 52206285 52207208 923 True 1195 1195 90.291 1778 2687 1 chr6A.!!$R1 909
6 TraesCS3D01G112200 chr6A 6430657 6431357 700 False 451 451 78.348 1040 1739 1 chr6A.!!$F2 699
7 TraesCS3D01G112200 chr2A 539809035 539809953 918 False 1251 1251 91.450 1778 2687 1 chr2A.!!$F1 909
8 TraesCS3D01G112200 chr7B 429848590 429849512 922 True 1232 1232 91.037 1778 2687 1 chr7B.!!$R1 909
9 TraesCS3D01G112200 chr4A 95958953 95959876 923 False 1229 1229 90.929 1778 2687 1 chr4A.!!$F1 909
10 TraesCS3D01G112200 chr1D 159078653 159079586 933 False 1205 1205 90.385 1778 2687 1 chr1D.!!$F2 909
11 TraesCS3D01G112200 chr3B 109965601 109966424 823 False 793 793 84.056 1 850 1 chr3B.!!$F1 849
12 TraesCS3D01G112200 chr2B 796083366 796084046 680 True 436 436 78.331 1066 1745 1 chr2B.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 874 0.179029 CGAGGGTGGTGGAAAACAGT 60.179 55.0 0.0 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2034 0.035915 GACTCTTCTGGCCCAACTCC 60.036 60.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.718047 GGTACGACCTTTAGTAATTTGTTTTG 57.282 34.615 0.00 0.00 34.73 2.44
105 106 5.174395 CCTGACTCTAGACCTGAACAATTG 58.826 45.833 3.24 3.24 0.00 2.32
126 127 8.380644 CAATTGCATCATGAGAAAAGAACAATC 58.619 33.333 0.09 0.00 0.00 2.67
134 135 8.724229 TCATGAGAAAAGAACAATCACATACAG 58.276 33.333 0.00 0.00 0.00 2.74
141 142 7.700322 AAGAACAATCACATACAGTATAGCG 57.300 36.000 0.00 0.00 0.00 4.26
143 144 6.918569 AGAACAATCACATACAGTATAGCGAC 59.081 38.462 0.00 0.00 0.00 5.19
147 148 6.980051 ATCACATACAGTATAGCGACGATA 57.020 37.500 0.00 0.00 0.00 2.92
154 155 4.023107 ACAGTATAGCGACGATACATGCTT 60.023 41.667 0.00 0.00 38.82 3.91
161 162 5.154932 AGCGACGATACATGCTTAAGTATC 58.845 41.667 2.71 3.24 41.86 2.24
183 184 0.892755 TGGGATACGGTGACACTCAC 59.107 55.000 5.39 0.00 46.23 3.51
215 216 5.587043 ACAAGTCCACAAAATTACAAGTCGA 59.413 36.000 0.00 0.00 0.00 4.20
218 219 4.851558 GTCCACAAAATTACAAGTCGATGC 59.148 41.667 0.00 0.00 0.00 3.91
224 225 0.981183 TTACAAGTCGATGCAGGGGT 59.019 50.000 0.00 0.00 0.00 4.95
229 230 0.824759 AGTCGATGCAGGGGTCTAAC 59.175 55.000 0.00 0.00 0.00 2.34
262 263 7.041848 GCATGCTACAGTATGATGTACAATTCA 60.042 37.037 11.37 0.00 39.98 2.57
267 268 9.971922 CTACAGTATGATGTACAATTCATCTCA 57.028 33.333 13.87 5.51 41.30 3.27
268 269 8.654230 ACAGTATGATGTACAATTCATCTCAC 57.346 34.615 13.87 8.41 41.30 3.51
276 277 5.882000 TGTACAATTCATCTCACTGGGATTG 59.118 40.000 0.00 0.00 0.00 2.67
285 286 4.774124 TCTCACTGGGATTGATCATGTTC 58.226 43.478 0.00 0.00 0.00 3.18
296 297 7.128331 GGATTGATCATGTTCGTTGTGAATAG 58.872 38.462 0.00 0.00 39.21 1.73
304 305 4.876679 TGTTCGTTGTGAATAGGTGAACAA 59.123 37.500 2.71 0.00 40.63 2.83
324 325 7.667635 TGAACAAAATATGACCACCATCAACTA 59.332 33.333 0.00 0.00 36.71 2.24
345 346 2.447244 AGTGAAGAAGAGAAGTGGCG 57.553 50.000 0.00 0.00 0.00 5.69
364 365 3.575858 CGACACAAATGAATCGCTAGG 57.424 47.619 0.00 0.00 0.00 3.02
365 366 2.285834 CGACACAAATGAATCGCTAGGC 60.286 50.000 0.00 0.00 0.00 3.93
380 381 3.996480 GCTAGGCGTCTGAGGATATTTT 58.004 45.455 0.00 0.00 0.00 1.82
400 401 3.526931 TTTTTCCCGTTGCAATGAACA 57.473 38.095 20.36 5.76 0.00 3.18
424 425 7.390440 ACAAGCATGTTTGTTAGCTATTACTGA 59.610 33.333 20.76 0.00 38.05 3.41
426 427 8.511604 AGCATGTTTGTTAGCTATTACTGATT 57.488 30.769 0.00 0.00 35.19 2.57
475 476 9.593565 AGAAAAAGACCAAAGGAATAGAAATCT 57.406 29.630 0.00 0.00 0.00 2.40
485 486 9.243105 CAAAGGAATAGAAATCTTTAAGGGACA 57.757 33.333 0.00 0.00 0.00 4.02
486 487 9.997172 AAAGGAATAGAAATCTTTAAGGGACAT 57.003 29.630 0.00 0.00 0.00 3.06
487 488 9.634021 AAGGAATAGAAATCTTTAAGGGACATC 57.366 33.333 0.00 0.00 0.00 3.06
488 489 7.934120 AGGAATAGAAATCTTTAAGGGACATCG 59.066 37.037 0.00 0.00 0.00 3.84
489 490 7.308049 GGAATAGAAATCTTTAAGGGACATCGC 60.308 40.741 0.00 0.00 0.00 4.58
490 491 5.104259 AGAAATCTTTAAGGGACATCGCT 57.896 39.130 0.00 0.00 41.18 4.93
491 492 6.235231 AGAAATCTTTAAGGGACATCGCTA 57.765 37.500 0.00 0.00 38.25 4.26
492 493 6.650120 AGAAATCTTTAAGGGACATCGCTAA 58.350 36.000 0.00 0.00 38.25 3.09
493 494 7.110155 AGAAATCTTTAAGGGACATCGCTAAA 58.890 34.615 0.00 1.14 38.25 1.85
494 495 6.927294 AATCTTTAAGGGACATCGCTAAAG 57.073 37.500 14.62 14.62 38.25 1.85
498 499 1.223487 GGGACATCGCTAAAGGGCA 59.777 57.895 0.00 0.00 0.00 5.36
504 505 4.065088 GACATCGCTAAAGGGCATATTCA 58.935 43.478 0.00 0.00 0.00 2.57
509 510 2.749621 GCTAAAGGGCATATTCATCCGG 59.250 50.000 0.00 0.00 0.00 5.14
516 517 1.067142 GCATATTCATCCGGTCGGCTA 60.067 52.381 0.00 0.00 34.68 3.93
518 519 3.181479 GCATATTCATCCGGTCGGCTATA 60.181 47.826 0.00 0.85 34.68 1.31
520 521 1.254026 TTCATCCGGTCGGCTATAGG 58.746 55.000 0.00 0.00 34.68 2.57
521 522 1.215647 CATCCGGTCGGCTATAGGC 59.784 63.158 16.13 16.13 40.90 3.93
522 523 1.228769 ATCCGGTCGGCTATAGGCA 60.229 57.895 24.43 10.18 44.01 4.75
523 524 0.614979 ATCCGGTCGGCTATAGGCAT 60.615 55.000 24.43 7.79 44.01 4.40
524 525 1.215647 CCGGTCGGCTATAGGCATC 59.784 63.158 24.43 15.89 44.01 3.91
525 526 1.154016 CGGTCGGCTATAGGCATCG 60.154 63.158 24.43 18.54 44.01 3.84
526 527 1.583495 CGGTCGGCTATAGGCATCGA 61.583 60.000 24.43 11.94 44.01 3.59
527 528 0.818296 GGTCGGCTATAGGCATCGAT 59.182 55.000 24.43 0.00 44.01 3.59
528 529 1.204941 GGTCGGCTATAGGCATCGATT 59.795 52.381 24.43 0.00 44.01 3.34
529 530 2.531206 GTCGGCTATAGGCATCGATTC 58.469 52.381 24.43 0.00 44.01 2.52
530 531 2.094700 GTCGGCTATAGGCATCGATTCA 60.095 50.000 24.43 0.00 44.01 2.57
531 532 2.560981 TCGGCTATAGGCATCGATTCAA 59.439 45.455 24.43 0.00 44.01 2.69
532 533 3.195610 TCGGCTATAGGCATCGATTCAAT 59.804 43.478 24.43 0.00 44.01 2.57
533 534 3.553511 CGGCTATAGGCATCGATTCAATC 59.446 47.826 24.43 0.00 44.01 2.67
534 535 4.768659 GCTATAGGCATCGATTCAATCG 57.231 45.455 13.92 13.92 46.41 3.34
535 536 3.553511 GCTATAGGCATCGATTCAATCGG 59.446 47.826 19.55 5.84 45.73 4.18
536 537 6.016893 GCTATAGGCATCGATTCAATCGGC 62.017 50.000 19.55 15.09 45.73 5.54
549 550 1.647545 AATCGGCATGTGACCAAGCG 61.648 55.000 0.00 0.00 36.17 4.68
555 556 1.528076 ATGTGACCAAGCGTGCCAA 60.528 52.632 0.00 0.00 0.00 4.52
562 563 3.181475 TGACCAAGCGTGCCAATTTTAAA 60.181 39.130 0.00 0.00 0.00 1.52
606 607 7.439157 TGAACATAGTATAATTGCAGATGCC 57.561 36.000 1.72 0.00 41.18 4.40
621 622 1.192312 GATGCCGTACATGTGCATACG 59.808 52.381 18.90 15.15 45.20 3.06
628 629 1.586422 ACATGTGCATACGCTCATCC 58.414 50.000 0.00 0.00 46.65 3.51
629 630 1.134431 ACATGTGCATACGCTCATCCA 60.134 47.619 0.00 0.00 46.65 3.41
631 632 2.330440 TGTGCATACGCTCATCCATT 57.670 45.000 0.00 0.00 36.74 3.16
633 634 3.802866 TGTGCATACGCTCATCCATTTA 58.197 40.909 0.00 0.00 36.74 1.40
642 643 3.814945 GCTCATCCATTTAAGCGCATAC 58.185 45.455 11.47 0.00 0.00 2.39
643 644 3.250762 GCTCATCCATTTAAGCGCATACA 59.749 43.478 11.47 0.00 0.00 2.29
644 645 4.083110 GCTCATCCATTTAAGCGCATACAT 60.083 41.667 11.47 0.00 0.00 2.29
662 663 6.881570 CATACATGCATATCTCACCCTCATA 58.118 40.000 0.00 0.00 0.00 2.15
682 683 5.425217 TCATAAGCACCTTCAAGATAGTGGA 59.575 40.000 0.00 0.00 0.00 4.02
683 684 4.851639 AAGCACCTTCAAGATAGTGGAT 57.148 40.909 0.00 0.00 0.00 3.41
684 685 4.148128 AGCACCTTCAAGATAGTGGATG 57.852 45.455 0.00 0.00 0.00 3.51
686 687 4.125703 GCACCTTCAAGATAGTGGATGAG 58.874 47.826 0.00 0.00 0.00 2.90
692 695 7.566879 ACCTTCAAGATAGTGGATGAGACTATT 59.433 37.037 0.00 0.00 36.87 1.73
718 721 5.725110 AGATTAACGAAGTCATCACATGC 57.275 39.130 0.00 0.00 45.00 4.06
722 725 1.067565 ACGAAGTCATCACATGCGTCT 60.068 47.619 0.00 0.00 29.74 4.18
723 726 1.585668 CGAAGTCATCACATGCGTCTC 59.414 52.381 0.00 0.00 0.00 3.36
732 735 3.511699 TCACATGCGTCTCATAGTCAAC 58.488 45.455 0.00 0.00 33.19 3.18
733 736 2.604914 CACATGCGTCTCATAGTCAACC 59.395 50.000 0.00 0.00 33.19 3.77
738 741 2.924290 GCGTCTCATAGTCAACCAGAAC 59.076 50.000 0.00 0.00 0.00 3.01
739 742 3.614150 GCGTCTCATAGTCAACCAGAACA 60.614 47.826 0.00 0.00 0.00 3.18
740 743 4.748892 CGTCTCATAGTCAACCAGAACAT 58.251 43.478 0.00 0.00 0.00 2.71
746 750 6.173339 TCATAGTCAACCAGAACATTTCCTC 58.827 40.000 0.00 0.00 0.00 3.71
751 755 1.271379 ACCAGAACATTTCCTCCCACG 60.271 52.381 0.00 0.00 0.00 4.94
758 762 2.225017 ACATTTCCTCCCACGGAACAAT 60.225 45.455 0.00 0.00 42.50 2.71
762 766 1.209504 TCCTCCCACGGAACAATCATC 59.790 52.381 0.00 0.00 0.00 2.92
806 810 8.432110 AATTCAGAAAAATACAAACACCAACC 57.568 30.769 0.00 0.00 0.00 3.77
822 826 5.762045 CACCAACCAGTGTCAAATTTAGAG 58.238 41.667 0.00 0.00 32.89 2.43
826 830 5.695851 ACCAGTGTCAAATTTAGAGCTTG 57.304 39.130 0.00 0.00 0.00 4.01
832 836 6.151817 AGTGTCAAATTTAGAGCTTGAATCCC 59.848 38.462 0.00 0.00 31.21 3.85
839 843 6.920569 TTTAGAGCTTGAATCCCGATAAAC 57.079 37.500 0.00 0.00 0.00 2.01
842 846 4.162320 AGAGCTTGAATCCCGATAAACTGA 59.838 41.667 0.00 0.00 0.00 3.41
850 854 6.202762 TGAATCCCGATAAACTGATTTCATCG 59.797 38.462 0.00 0.00 34.55 3.84
851 855 3.807622 TCCCGATAAACTGATTTCATCGC 59.192 43.478 0.00 0.00 34.04 4.58
852 856 3.362986 CCCGATAAACTGATTTCATCGCG 60.363 47.826 0.00 0.00 34.04 5.87
853 857 3.489416 CCGATAAACTGATTTCATCGCGA 59.511 43.478 13.09 13.09 34.04 5.87
854 858 4.375405 CCGATAAACTGATTTCATCGCGAG 60.375 45.833 16.66 7.11 34.04 5.03
855 859 4.375405 CGATAAACTGATTTCATCGCGAGG 60.375 45.833 15.81 15.81 31.21 4.63
856 860 1.656652 AACTGATTTCATCGCGAGGG 58.343 50.000 21.76 12.63 0.00 4.30
857 861 0.537188 ACTGATTTCATCGCGAGGGT 59.463 50.000 21.76 6.60 0.00 4.34
858 862 0.933097 CTGATTTCATCGCGAGGGTG 59.067 55.000 21.76 11.59 0.00 4.61
859 863 0.461870 TGATTTCATCGCGAGGGTGG 60.462 55.000 21.76 4.59 0.00 4.61
860 864 0.462047 GATTTCATCGCGAGGGTGGT 60.462 55.000 21.76 4.76 0.00 4.16
861 865 0.744414 ATTTCATCGCGAGGGTGGTG 60.744 55.000 21.76 9.98 36.08 4.17
862 866 2.796483 TTTCATCGCGAGGGTGGTGG 62.796 60.000 21.76 0.00 35.46 4.61
863 867 3.770040 CATCGCGAGGGTGGTGGA 61.770 66.667 16.66 0.00 31.01 4.02
864 868 3.000819 ATCGCGAGGGTGGTGGAA 61.001 61.111 16.66 0.00 0.00 3.53
865 869 2.589157 ATCGCGAGGGTGGTGGAAA 61.589 57.895 16.66 0.00 0.00 3.13
866 870 2.119484 ATCGCGAGGGTGGTGGAAAA 62.119 55.000 16.66 0.00 0.00 2.29
867 871 2.613506 CGCGAGGGTGGTGGAAAAC 61.614 63.158 0.00 0.00 0.00 2.43
868 872 1.527380 GCGAGGGTGGTGGAAAACA 60.527 57.895 0.00 0.00 0.00 2.83
869 873 1.515521 GCGAGGGTGGTGGAAAACAG 61.516 60.000 0.00 0.00 0.00 3.16
870 874 0.179029 CGAGGGTGGTGGAAAACAGT 60.179 55.000 0.00 0.00 0.00 3.55
871 875 1.749286 CGAGGGTGGTGGAAAACAGTT 60.749 52.381 0.00 0.00 0.00 3.16
872 876 2.384828 GAGGGTGGTGGAAAACAGTTT 58.615 47.619 0.00 0.00 0.00 2.66
873 877 2.764010 GAGGGTGGTGGAAAACAGTTTT 59.236 45.455 11.22 11.22 35.12 2.43
874 878 3.178046 AGGGTGGTGGAAAACAGTTTTT 58.822 40.909 12.62 0.00 37.65 1.94
875 879 3.196901 AGGGTGGTGGAAAACAGTTTTTC 59.803 43.478 12.62 11.21 46.88 2.29
883 887 3.635331 GAAAACAGTTTTTCCCCTACGC 58.365 45.455 12.62 0.00 43.37 4.42
884 888 2.351706 AACAGTTTTTCCCCTACGCA 57.648 45.000 0.00 0.00 0.00 5.24
885 889 1.601166 ACAGTTTTTCCCCTACGCAC 58.399 50.000 0.00 0.00 0.00 5.34
886 890 0.879090 CAGTTTTTCCCCTACGCACC 59.121 55.000 0.00 0.00 0.00 5.01
887 891 0.251033 AGTTTTTCCCCTACGCACCC 60.251 55.000 0.00 0.00 0.00 4.61
888 892 1.302671 TTTTTCCCCTACGCACCCG 60.303 57.895 0.00 0.00 41.14 5.28
889 893 3.905437 TTTTCCCCTACGCACCCGC 62.905 63.158 0.00 0.00 38.22 6.13
891 895 3.961225 TTCCCCTACGCACCCGCTA 62.961 63.158 0.00 0.00 38.22 4.26
892 896 3.912907 CCCCTACGCACCCGCTAG 61.913 72.222 0.00 0.00 38.22 3.42
893 897 3.912907 CCCTACGCACCCGCTAGG 61.913 72.222 0.00 0.00 43.78 3.02
906 910 2.599677 CCGCTAGGGTTATTCTCCTCT 58.400 52.381 6.02 0.00 34.75 3.69
907 911 2.966516 CCGCTAGGGTTATTCTCCTCTT 59.033 50.000 6.02 0.00 34.75 2.85
908 912 4.150359 CCGCTAGGGTTATTCTCCTCTTA 58.850 47.826 6.02 0.00 34.75 2.10
909 913 4.218852 CCGCTAGGGTTATTCTCCTCTTAG 59.781 50.000 6.02 0.00 34.75 2.18
910 914 4.218852 CGCTAGGGTTATTCTCCTCTTAGG 59.781 50.000 0.00 0.00 36.46 2.69
911 915 4.020928 GCTAGGGTTATTCTCCTCTTAGGC 60.021 50.000 0.00 0.00 34.61 3.93
912 916 2.966516 AGGGTTATTCTCCTCTTAGGCG 59.033 50.000 0.00 0.00 34.61 5.52
913 917 2.963782 GGGTTATTCTCCTCTTAGGCGA 59.036 50.000 0.00 0.00 34.61 5.54
914 918 3.579151 GGGTTATTCTCCTCTTAGGCGAT 59.421 47.826 0.00 0.00 34.61 4.58
915 919 4.322123 GGGTTATTCTCCTCTTAGGCGATC 60.322 50.000 0.00 0.00 34.61 3.69
916 920 4.477780 GTTATTCTCCTCTTAGGCGATCG 58.522 47.826 11.69 11.69 34.61 3.69
917 921 2.054232 TTCTCCTCTTAGGCGATCGT 57.946 50.000 17.81 0.00 34.61 3.73
918 922 1.309950 TCTCCTCTTAGGCGATCGTG 58.690 55.000 17.81 2.72 34.61 4.35
919 923 1.134189 TCTCCTCTTAGGCGATCGTGA 60.134 52.381 17.81 6.82 34.61 4.35
920 924 1.883275 CTCCTCTTAGGCGATCGTGAT 59.117 52.381 17.81 5.56 34.61 3.06
921 925 1.880675 TCCTCTTAGGCGATCGTGATC 59.119 52.381 17.81 4.51 34.61 2.92
937 941 4.667420 TCGCCTTCGAGTTCCAAC 57.333 55.556 0.00 0.00 40.21 3.77
938 942 1.005394 TCGCCTTCGAGTTCCAACC 60.005 57.895 0.00 0.00 40.21 3.77
939 943 1.004918 CGCCTTCGAGTTCCAACCT 60.005 57.895 0.00 0.00 38.10 3.50
940 944 1.014564 CGCCTTCGAGTTCCAACCTC 61.015 60.000 0.00 0.00 38.10 3.85
941 945 0.673956 GCCTTCGAGTTCCAACCTCC 60.674 60.000 0.00 0.00 0.00 4.30
942 946 0.389948 CCTTCGAGTTCCAACCTCCG 60.390 60.000 0.00 0.00 0.00 4.63
943 947 0.389948 CTTCGAGTTCCAACCTCCGG 60.390 60.000 0.00 0.00 0.00 5.14
944 948 2.434359 CGAGTTCCAACCTCCGGC 60.434 66.667 0.00 0.00 0.00 6.13
945 949 2.943978 CGAGTTCCAACCTCCGGCT 61.944 63.158 0.00 0.00 0.00 5.52
946 950 1.376037 GAGTTCCAACCTCCGGCTG 60.376 63.158 0.00 0.00 0.00 4.85
947 951 2.359975 GTTCCAACCTCCGGCTGG 60.360 66.667 4.71 4.71 0.00 4.85
948 952 4.344865 TTCCAACCTCCGGCTGGC 62.345 66.667 6.73 0.00 34.14 4.85
951 955 4.785453 CAACCTCCGGCTGGCCTC 62.785 72.222 6.73 0.00 34.14 4.70
965 969 4.351054 CCTCGGCCTGCAACCCTT 62.351 66.667 0.00 0.00 0.00 3.95
966 970 3.058160 CTCGGCCTGCAACCCTTG 61.058 66.667 0.00 0.00 0.00 3.61
975 979 4.597032 CAACCCTTGCTGTTCCCA 57.403 55.556 0.00 0.00 0.00 4.37
976 980 2.344535 CAACCCTTGCTGTTCCCAG 58.655 57.895 0.00 0.00 41.91 4.45
977 981 1.153756 AACCCTTGCTGTTCCCAGG 59.846 57.895 0.00 0.00 39.22 4.45
978 982 2.036256 CCCTTGCTGTTCCCAGGG 59.964 66.667 0.00 0.00 39.22 4.45
979 983 2.677875 CCTTGCTGTTCCCAGGGC 60.678 66.667 0.00 0.00 39.22 5.19
980 984 3.058160 CTTGCTGTTCCCAGGGCG 61.058 66.667 0.00 0.00 39.22 6.13
981 985 4.659172 TTGCTGTTCCCAGGGCGG 62.659 66.667 0.00 0.00 39.22 6.13
984 988 3.322466 CTGTTCCCAGGGCGGTCT 61.322 66.667 0.00 0.00 34.90 3.85
985 989 2.852075 TGTTCCCAGGGCGGTCTT 60.852 61.111 0.00 0.00 0.00 3.01
986 990 2.046217 GTTCCCAGGGCGGTCTTC 60.046 66.667 0.00 0.00 0.00 2.87
987 991 2.203938 TTCCCAGGGCGGTCTTCT 60.204 61.111 0.00 0.00 0.00 2.85
988 992 1.846124 TTCCCAGGGCGGTCTTCTT 60.846 57.895 0.00 0.00 0.00 2.52
989 993 2.045926 CCCAGGGCGGTCTTCTTG 60.046 66.667 0.00 0.00 0.00 3.02
990 994 2.747855 CCAGGGCGGTCTTCTTGC 60.748 66.667 0.00 0.00 0.00 4.01
996 1000 4.778143 CGGTCTTCTTGCCCGGGG 62.778 72.222 25.28 9.31 38.09 5.73
997 1001 3.647771 GGTCTTCTTGCCCGGGGT 61.648 66.667 25.28 0.00 0.00 4.95
998 1002 2.359975 GTCTTCTTGCCCGGGGTG 60.360 66.667 25.28 5.75 0.00 4.61
999 1003 3.646715 TCTTCTTGCCCGGGGTGG 61.647 66.667 25.28 5.37 37.55 4.61
1000 1004 3.646715 CTTCTTGCCCGGGGTGGA 61.647 66.667 25.28 7.75 42.00 4.02
1001 1005 2.938798 TTCTTGCCCGGGGTGGAT 60.939 61.111 25.28 0.00 42.00 3.41
1002 1006 3.280938 TTCTTGCCCGGGGTGGATG 62.281 63.158 25.28 0.00 42.00 3.51
1003 1007 4.820744 CTTGCCCGGGGTGGATGG 62.821 72.222 25.28 0.00 42.00 3.51
1009 1013 4.530857 CGGGGTGGATGGCGTCTC 62.531 72.222 6.67 0.63 0.00 3.36
1010 1014 4.176752 GGGGTGGATGGCGTCTCC 62.177 72.222 6.67 9.40 0.00 3.71
1011 1015 4.176752 GGGTGGATGGCGTCTCCC 62.177 72.222 18.95 18.95 35.25 4.30
1012 1016 3.083997 GGTGGATGGCGTCTCCCT 61.084 66.667 6.67 0.00 31.32 4.20
1013 1017 2.501610 GTGGATGGCGTCTCCCTC 59.498 66.667 6.67 0.00 31.32 4.30
1014 1018 2.764128 TGGATGGCGTCTCCCTCC 60.764 66.667 6.67 0.00 46.46 4.30
1015 1019 3.917760 GGATGGCGTCTCCCTCCG 61.918 72.222 6.67 0.00 39.40 4.63
1016 1020 2.833582 GATGGCGTCTCCCTCCGA 60.834 66.667 0.00 0.00 0.00 4.55
1017 1021 2.123251 ATGGCGTCTCCCTCCGAT 60.123 61.111 0.00 0.00 0.00 4.18
1018 1022 2.427540 GATGGCGTCTCCCTCCGATG 62.428 65.000 0.00 0.00 0.00 3.84
1019 1023 4.593864 GGCGTCTCCCTCCGATGC 62.594 72.222 0.00 0.00 41.50 3.91
1020 1024 3.532155 GCGTCTCCCTCCGATGCT 61.532 66.667 0.00 0.00 39.65 3.79
1021 1025 2.725008 CGTCTCCCTCCGATGCTC 59.275 66.667 0.00 0.00 0.00 4.26
1022 1026 2.121538 CGTCTCCCTCCGATGCTCA 61.122 63.158 0.00 0.00 0.00 4.26
1023 1027 1.439644 GTCTCCCTCCGATGCTCAC 59.560 63.158 0.00 0.00 0.00 3.51
1024 1028 1.040339 GTCTCCCTCCGATGCTCACT 61.040 60.000 0.00 0.00 0.00 3.41
1025 1029 0.753479 TCTCCCTCCGATGCTCACTC 60.753 60.000 0.00 0.00 0.00 3.51
1026 1030 1.743321 CTCCCTCCGATGCTCACTCC 61.743 65.000 0.00 0.00 0.00 3.85
1027 1031 2.415010 CCTCCGATGCTCACTCCG 59.585 66.667 0.00 0.00 0.00 4.63
1028 1032 2.279120 CTCCGATGCTCACTCCGC 60.279 66.667 0.00 0.00 0.00 5.54
1029 1033 3.781770 CTCCGATGCTCACTCCGCC 62.782 68.421 0.00 0.00 0.00 6.13
1032 1036 4.819761 GATGCTCACTCCGCCGCA 62.820 66.667 0.00 0.00 36.75 5.69
1033 1037 4.393155 ATGCTCACTCCGCCGCAA 62.393 61.111 0.00 0.00 35.83 4.85
1076 1080 0.035439 GCCAAAACCGATCTGGAGGA 60.035 55.000 10.05 0.00 42.00 3.71
1090 1094 5.768980 TCTGGAGGATTTCTTTGATCAGT 57.231 39.130 0.00 0.00 0.00 3.41
1092 1096 7.257790 TCTGGAGGATTTCTTTGATCAGTTA 57.742 36.000 0.00 0.00 0.00 2.24
1122 1126 2.493675 TGAGGAAGAGTTCGAGGATGTG 59.506 50.000 0.00 0.00 0.00 3.21
1125 1129 2.758979 GGAAGAGTTCGAGGATGTGGTA 59.241 50.000 0.00 0.00 0.00 3.25
1128 1132 4.657436 AGAGTTCGAGGATGTGGTAATC 57.343 45.455 0.00 0.00 0.00 1.75
1131 1135 3.114065 GTTCGAGGATGTGGTAATCGAC 58.886 50.000 0.00 0.00 41.63 4.20
1146 1150 1.598882 TCGACGAGGATGATCCAGAG 58.401 55.000 14.90 6.77 39.61 3.35
1149 1153 1.269448 GACGAGGATGATCCAGAGCTC 59.731 57.143 14.90 5.27 39.61 4.09
1152 1156 2.045524 GAGGATGATCCAGAGCTCCAA 58.954 52.381 14.90 0.00 39.61 3.53
1155 1159 2.437281 GGATGATCCAGAGCTCCAAGAA 59.563 50.000 10.93 0.00 36.28 2.52
1159 1163 2.847327 TCCAGAGCTCCAAGAAAGTG 57.153 50.000 10.93 0.00 0.00 3.16
1162 1166 2.027745 CCAGAGCTCCAAGAAAGTGCTA 60.028 50.000 10.93 0.00 34.41 3.49
1164 1168 2.235898 AGAGCTCCAAGAAAGTGCTAGG 59.764 50.000 10.93 0.00 34.41 3.02
1170 1174 2.027192 CCAAGAAAGTGCTAGGTGGCTA 60.027 50.000 0.00 0.00 0.00 3.93
1176 1180 3.648694 GCTAGGTGGCTAGCCCTT 58.351 61.111 30.81 19.61 44.68 3.95
1191 1195 3.249687 CCTTGCTAGGGTTCACACC 57.750 57.895 6.27 0.00 43.37 4.16
1193 1197 0.320374 CTTGCTAGGGTTCACACCGA 59.680 55.000 0.00 0.00 45.39 4.69
1206 1210 1.264288 CACACCGAGAAAACCTTCAGC 59.736 52.381 0.00 0.00 33.64 4.26
1210 1214 1.537202 CCGAGAAAACCTTCAGCCAAG 59.463 52.381 0.00 0.00 33.64 3.61
1245 1249 2.131183 GATATGAGAGCTGCGTGGAAC 58.869 52.381 0.00 0.00 0.00 3.62
1248 1252 4.379243 AGAGCTGCGTGGAACCCG 62.379 66.667 0.00 0.00 0.00 5.28
1249 1253 4.373116 GAGCTGCGTGGAACCCGA 62.373 66.667 0.00 0.00 0.00 5.14
1257 1261 2.915659 TGGAACCCGACGCAGAGT 60.916 61.111 0.00 0.00 0.00 3.24
1260 1264 1.582968 GAACCCGACGCAGAGTGTA 59.417 57.895 0.00 0.00 0.00 2.90
1261 1265 0.731855 GAACCCGACGCAGAGTGTAC 60.732 60.000 0.00 0.00 0.00 2.90
1263 1267 2.683859 CCCGACGCAGAGTGTACGA 61.684 63.158 0.00 0.00 0.00 3.43
1272 1276 0.683504 AGAGTGTACGATTCCGGCCT 60.684 55.000 0.00 0.00 40.78 5.19
1275 1279 0.390735 GTGTACGATTCCGGCCTGTT 60.391 55.000 0.00 0.00 40.78 3.16
1277 1281 0.108520 GTACGATTCCGGCCTGTTGA 60.109 55.000 0.00 0.00 40.78 3.18
1278 1282 0.108520 TACGATTCCGGCCTGTTGAC 60.109 55.000 0.00 0.00 40.78 3.18
1287 1291 2.046285 GCCTGTTGACCCCAATCGG 61.046 63.158 0.00 0.00 34.39 4.18
1290 1294 1.165270 CTGTTGACCCCAATCGGTTC 58.835 55.000 0.00 0.00 35.79 3.62
1293 1297 0.975135 TTGACCCCAATCGGTTCGTA 59.025 50.000 0.00 0.00 35.79 3.43
1296 1300 0.978907 ACCCCAATCGGTTCGTAGTT 59.021 50.000 0.00 0.00 29.19 2.24
1302 1306 0.892755 ATCGGTTCGTAGTTCAGGCA 59.107 50.000 0.00 0.00 0.00 4.75
1305 1309 1.403647 CGGTTCGTAGTTCAGGCATCA 60.404 52.381 0.00 0.00 0.00 3.07
1314 1318 2.812499 CAGGCATCATGCTTGGGC 59.188 61.111 13.93 4.44 45.32 5.36
1329 1333 0.751277 TGGGCAATTGGGAGCGTATG 60.751 55.000 7.72 0.00 0.00 2.39
1333 1337 2.221169 GCAATTGGGAGCGTATGATGA 58.779 47.619 7.72 0.00 0.00 2.92
1334 1338 2.816087 GCAATTGGGAGCGTATGATGAT 59.184 45.455 7.72 0.00 0.00 2.45
1338 1342 1.348696 TGGGAGCGTATGATGATGCAT 59.651 47.619 0.00 0.00 33.52 3.96
1344 1348 2.873245 GCGTATGATGATGCATGGACCT 60.873 50.000 2.46 0.00 0.00 3.85
1348 1352 1.285667 TGATGATGCATGGACCTTGGT 59.714 47.619 2.46 0.00 0.00 3.67
1353 1357 1.327303 TGCATGGACCTTGGTTGTTC 58.673 50.000 9.29 0.00 0.00 3.18
1356 1360 0.893727 ATGGACCTTGGTTGTTCCGC 60.894 55.000 0.00 0.00 39.52 5.54
1358 1362 1.104577 GGACCTTGGTTGTTCCGCAA 61.105 55.000 0.00 0.00 39.52 4.85
1401 1405 5.862845 CCATATGATGGCTTCAGTAGAACT 58.137 41.667 3.65 0.00 44.70 3.01
1450 1454 1.636148 ATGGCTGCAAATCCACAAGT 58.364 45.000 0.50 0.00 34.81 3.16
1452 1456 2.591923 TGGCTGCAAATCCACAAGTTA 58.408 42.857 0.50 0.00 0.00 2.24
1461 1465 5.619981 GCAAATCCACAAGTTACCAGATGTC 60.620 44.000 0.00 0.00 0.00 3.06
1464 1468 6.814954 ATCCACAAGTTACCAGATGTCTAT 57.185 37.500 0.00 0.00 0.00 1.98
1479 1483 7.148120 CCAGATGTCTATTGCAAGAAGAACATT 60.148 37.037 14.09 9.14 0.00 2.71
1491 1495 5.192327 AGAAGAACATTGTGGAAAAGCTG 57.808 39.130 0.00 0.00 0.00 4.24
1497 1501 3.132646 ACATTGTGGAAAAGCTGCTGAAA 59.867 39.130 1.35 0.00 0.00 2.69
1498 1502 3.883830 TTGTGGAAAAGCTGCTGAAAA 57.116 38.095 1.35 0.00 0.00 2.29
1509 1513 1.761449 TGCTGAAAAGTGCAGGTGAA 58.239 45.000 0.00 0.00 34.84 3.18
1510 1514 2.309613 TGCTGAAAAGTGCAGGTGAAT 58.690 42.857 0.00 0.00 34.84 2.57
1512 1516 3.888323 TGCTGAAAAGTGCAGGTGAATTA 59.112 39.130 0.00 0.00 34.84 1.40
1528 1532 5.163663 GGTGAATTAATGGAGATGCGTTTGA 60.164 40.000 0.00 0.00 0.00 2.69
1530 1534 6.974622 GTGAATTAATGGAGATGCGTTTGAAT 59.025 34.615 0.00 0.00 0.00 2.57
1533 1537 2.488204 TGGAGATGCGTTTGAATGGA 57.512 45.000 0.00 0.00 0.00 3.41
1555 1559 7.227873 TGGAAACACCAGAGTTGATTATGTAA 58.772 34.615 0.00 0.00 44.64 2.41
1557 1561 7.148239 GGAAACACCAGAGTTGATTATGTAAGG 60.148 40.741 0.00 0.00 38.79 2.69
1558 1562 5.745227 ACACCAGAGTTGATTATGTAAGGG 58.255 41.667 0.00 0.00 0.00 3.95
1560 1564 5.586243 CACCAGAGTTGATTATGTAAGGGTG 59.414 44.000 0.00 0.00 35.49 4.61
1563 1567 6.051717 CAGAGTTGATTATGTAAGGGTGAGG 58.948 44.000 0.00 0.00 0.00 3.86
1566 1570 4.771114 TGATTATGTAAGGGTGAGGGTG 57.229 45.455 0.00 0.00 0.00 4.61
1575 1579 1.073923 AGGGTGAGGGTGAAACATGAC 59.926 52.381 0.00 0.00 39.98 3.06
1577 1581 1.880027 GGTGAGGGTGAAACATGACAC 59.120 52.381 0.00 6.80 39.98 3.67
1583 1587 2.163818 GTGAAACATGACACCCGAGA 57.836 50.000 0.00 0.00 36.32 4.04
1584 1588 2.069273 GTGAAACATGACACCCGAGAG 58.931 52.381 0.00 0.00 36.32 3.20
1587 1591 1.194781 AACATGACACCCGAGAGCCT 61.195 55.000 0.00 0.00 0.00 4.58
1598 1602 1.134965 CCGAGAGCCTCTGACGAAATT 60.135 52.381 0.00 0.00 0.00 1.82
1605 1609 2.413371 GCCTCTGACGAAATTTGTGAGC 60.413 50.000 0.00 0.00 0.00 4.26
1611 1615 4.536065 TGACGAAATTTGTGAGCATTGTC 58.464 39.130 0.00 0.00 0.00 3.18
1614 1618 4.022068 ACGAAATTTGTGAGCATTGTCCAT 60.022 37.500 0.00 0.00 0.00 3.41
1618 1622 3.431673 TTGTGAGCATTGTCCATGGTA 57.568 42.857 12.58 0.00 43.99 3.25
1619 1623 3.431673 TGTGAGCATTGTCCATGGTAA 57.568 42.857 12.58 9.08 43.99 2.85
1620 1624 3.760738 TGTGAGCATTGTCCATGGTAAA 58.239 40.909 12.58 7.97 43.99 2.01
1622 1626 4.009675 GTGAGCATTGTCCATGGTAAAGA 58.990 43.478 12.58 0.00 43.99 2.52
1623 1627 4.458989 GTGAGCATTGTCCATGGTAAAGAA 59.541 41.667 12.58 0.00 43.99 2.52
1626 1630 3.438781 GCATTGTCCATGGTAAAGAACGA 59.561 43.478 12.58 1.18 32.81 3.85
1632 1636 3.071892 TCCATGGTAAAGAACGACAGGTT 59.928 43.478 12.58 0.00 42.96 3.50
1635 1639 5.646360 CCATGGTAAAGAACGACAGGTTTAT 59.354 40.000 2.57 0.00 39.50 1.40
1644 1648 2.735134 ACGACAGGTTTATCTTGTTCGC 59.265 45.455 0.00 0.00 36.50 4.70
1650 1654 6.170506 ACAGGTTTATCTTGTTCGCTATGAA 58.829 36.000 0.00 0.00 32.36 2.57
1653 1657 8.020819 CAGGTTTATCTTGTTCGCTATGAAAAA 58.979 33.333 0.00 0.00 38.60 1.94
1659 1663 3.497118 TGTTCGCTATGAAAAATTGGCG 58.503 40.909 0.00 0.00 43.22 5.69
1661 1665 3.673746 TCGCTATGAAAAATTGGCGAG 57.326 42.857 3.76 0.00 45.02 5.03
1662 1666 2.354510 TCGCTATGAAAAATTGGCGAGG 59.645 45.455 3.76 0.00 45.02 4.63
1665 1669 4.494484 GCTATGAAAAATTGGCGAGGTTT 58.506 39.130 0.00 0.00 0.00 3.27
1670 1674 2.611225 AAATTGGCGAGGTTTTGCAA 57.389 40.000 0.00 0.00 35.24 4.08
1671 1675 2.153366 AATTGGCGAGGTTTTGCAAG 57.847 45.000 0.00 0.00 35.24 4.01
1672 1676 0.318120 ATTGGCGAGGTTTTGCAAGG 59.682 50.000 0.00 0.00 35.24 3.61
1676 1681 0.102300 GCGAGGTTTTGCAAGGTTGT 59.898 50.000 0.00 0.00 33.62 3.32
1679 1684 1.480545 GAGGTTTTGCAAGGTTGTGGT 59.519 47.619 0.00 0.00 0.00 4.16
1709 1714 3.689347 CCATGAATTCAAGGAGTGTGGA 58.311 45.455 22.50 0.00 36.89 4.02
1711 1716 4.082571 CCATGAATTCAAGGAGTGTGGAAC 60.083 45.833 22.50 0.00 36.89 3.62
1712 1717 3.138304 TGAATTCAAGGAGTGTGGAACG 58.862 45.455 5.45 0.00 42.39 3.95
1715 1720 0.761323 TCAAGGAGTGTGGAACGGGA 60.761 55.000 0.00 0.00 42.39 5.14
1716 1721 0.320771 CAAGGAGTGTGGAACGGGAG 60.321 60.000 0.00 0.00 42.39 4.30
1718 1723 1.186267 AGGAGTGTGGAACGGGAGTC 61.186 60.000 0.00 0.00 46.69 3.36
1745 1750 6.454795 TGAGGAAAAGAATTTGAAATTCGGG 58.545 36.000 21.02 0.00 39.02 5.14
1746 1751 5.793817 AGGAAAAGAATTTGAAATTCGGGG 58.206 37.500 21.02 0.00 39.02 5.73
1747 1752 5.542251 AGGAAAAGAATTTGAAATTCGGGGA 59.458 36.000 21.02 0.00 39.02 4.81
1748 1753 5.869344 GGAAAAGAATTTGAAATTCGGGGAG 59.131 40.000 21.02 0.00 39.02 4.30
1749 1754 6.419484 AAAAGAATTTGAAATTCGGGGAGT 57.581 33.333 21.02 3.98 39.02 3.85
1750 1755 5.391312 AAGAATTTGAAATTCGGGGAGTG 57.609 39.130 21.02 0.00 33.51 3.51
1751 1756 3.763897 AGAATTTGAAATTCGGGGAGTGG 59.236 43.478 21.02 0.00 33.51 4.00
1752 1757 2.668144 TTTGAAATTCGGGGAGTGGT 57.332 45.000 0.00 0.00 0.00 4.16
1753 1758 2.668144 TTGAAATTCGGGGAGTGGTT 57.332 45.000 0.00 0.00 0.00 3.67
1754 1759 3.791953 TTGAAATTCGGGGAGTGGTTA 57.208 42.857 0.00 0.00 0.00 2.85
1755 1760 4.310022 TTGAAATTCGGGGAGTGGTTAT 57.690 40.909 0.00 0.00 0.00 1.89
1756 1761 5.438698 TTGAAATTCGGGGAGTGGTTATA 57.561 39.130 0.00 0.00 0.00 0.98
1757 1762 5.640158 TGAAATTCGGGGAGTGGTTATAT 57.360 39.130 0.00 0.00 0.00 0.86
1758 1763 5.373222 TGAAATTCGGGGAGTGGTTATATG 58.627 41.667 0.00 0.00 0.00 1.78
1759 1764 2.922740 TTCGGGGAGTGGTTATATGC 57.077 50.000 0.00 0.00 0.00 3.14
1760 1765 2.097110 TCGGGGAGTGGTTATATGCT 57.903 50.000 0.00 0.00 0.00 3.79
1761 1766 1.691976 TCGGGGAGTGGTTATATGCTG 59.308 52.381 0.00 0.00 0.00 4.41
1762 1767 1.691976 CGGGGAGTGGTTATATGCTGA 59.308 52.381 0.00 0.00 0.00 4.26
1763 1768 2.303022 CGGGGAGTGGTTATATGCTGAT 59.697 50.000 0.00 0.00 0.00 2.90
1764 1769 3.679389 GGGGAGTGGTTATATGCTGATG 58.321 50.000 0.00 0.00 0.00 3.07
1765 1770 3.077359 GGGAGTGGTTATATGCTGATGC 58.923 50.000 0.00 0.00 40.20 3.91
1766 1771 3.244700 GGGAGTGGTTATATGCTGATGCT 60.245 47.826 0.00 0.00 40.48 3.79
1767 1772 3.999663 GGAGTGGTTATATGCTGATGCTC 59.000 47.826 0.00 0.00 40.48 4.26
1768 1773 3.999663 GAGTGGTTATATGCTGATGCTCC 59.000 47.826 0.00 0.00 40.48 4.70
1769 1774 3.077359 GTGGTTATATGCTGATGCTCCC 58.923 50.000 0.00 0.00 40.48 4.30
1770 1775 2.710471 TGGTTATATGCTGATGCTCCCA 59.290 45.455 0.00 0.00 40.48 4.37
1771 1776 3.138098 TGGTTATATGCTGATGCTCCCAA 59.862 43.478 0.00 0.00 40.48 4.12
1772 1777 3.503748 GGTTATATGCTGATGCTCCCAAC 59.496 47.826 0.00 0.00 40.48 3.77
1773 1778 4.136796 GTTATATGCTGATGCTCCCAACA 58.863 43.478 0.00 0.00 40.48 3.33
1774 1779 2.804986 TATGCTGATGCTCCCAACAA 57.195 45.000 0.00 0.00 40.48 2.83
1775 1780 1.927487 ATGCTGATGCTCCCAACAAA 58.073 45.000 0.00 0.00 40.48 2.83
1962 1968 6.828785 AGTATCGCAGAAAAGGAATACCAAAT 59.171 34.615 0.00 0.00 43.58 2.32
2026 2032 2.154462 CAAAAGAAGACCACGGAGCAT 58.846 47.619 0.00 0.00 0.00 3.79
2027 2033 2.100605 AAAGAAGACCACGGAGCATC 57.899 50.000 0.00 0.00 0.00 3.91
2028 2034 0.108615 AAGAAGACCACGGAGCATCG 60.109 55.000 0.00 0.00 34.37 3.84
2049 2055 0.474660 AGTTGGGCCAGAAGAGTCCT 60.475 55.000 6.23 0.00 0.00 3.85
2056 2062 1.078567 CAGAAGAGTCCTGGGCTGC 60.079 63.158 5.04 0.00 0.00 5.25
2137 2153 1.546029 CTCCTTGATGTGAGACCGACA 59.454 52.381 0.00 0.00 0.00 4.35
2496 2525 2.416836 CCTCATCTCTTTTACGCGGTCA 60.417 50.000 12.47 0.00 0.00 4.02
2553 2590 1.005805 TGGTGCTTTATGCCACATCCT 59.994 47.619 0.00 0.00 42.00 3.24
2558 2595 4.023707 GTGCTTTATGCCACATCCTATGAC 60.024 45.833 0.00 0.00 42.00 3.06
2676 2714 0.620556 CCTATGGTGCCCTCTGTGTT 59.379 55.000 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 6.384224 TGTGATTGTTCTTTTCTCATGATGC 58.616 36.000 0.00 0.00 0.00 3.91
126 127 5.923665 TGTATCGTCGCTATACTGTATGTG 58.076 41.667 10.51 7.34 32.19 3.21
134 135 6.084925 ACTTAAGCATGTATCGTCGCTATAC 58.915 40.000 1.29 0.00 33.45 1.47
147 148 4.955811 TCCCATCGATACTTAAGCATGT 57.044 40.909 1.29 0.00 0.00 3.21
161 162 0.744874 AGTGTCACCGTATCCCATCG 59.255 55.000 0.00 0.00 0.00 3.84
165 166 3.735181 GTGAGTGTCACCGTATCCC 57.265 57.895 0.00 0.00 41.37 3.85
183 184 8.303156 TGTAATTTTGTGGACTTGTAATGATGG 58.697 33.333 0.00 0.00 0.00 3.51
187 188 9.180678 GACTTGTAATTTTGTGGACTTGTAATG 57.819 33.333 0.00 0.00 0.00 1.90
215 216 1.276622 ACTTCGTTAGACCCCTGCAT 58.723 50.000 0.00 0.00 0.00 3.96
218 219 1.822990 TGCTACTTCGTTAGACCCCTG 59.177 52.381 0.00 0.00 0.00 4.45
224 225 4.398358 ACTGTAGCATGCTACTTCGTTAGA 59.602 41.667 42.14 26.47 46.53 2.10
229 230 4.860072 TCATACTGTAGCATGCTACTTCG 58.140 43.478 42.14 33.59 46.53 3.79
262 263 5.374921 GAACATGATCAATCCCAGTGAGAT 58.625 41.667 0.00 0.00 0.00 2.75
267 268 3.634397 ACGAACATGATCAATCCCAGT 57.366 42.857 0.00 0.00 0.00 4.00
268 269 3.691118 ACAACGAACATGATCAATCCCAG 59.309 43.478 0.00 0.00 0.00 4.45
276 277 5.580691 TCACCTATTCACAACGAACATGATC 59.419 40.000 0.00 0.00 36.12 2.92
285 286 8.233868 TCATATTTTGTTCACCTATTCACAACG 58.766 33.333 0.00 0.00 0.00 4.10
296 297 5.184864 TGATGGTGGTCATATTTTGTTCACC 59.815 40.000 0.00 0.00 43.32 4.02
304 305 8.713971 TCACTATAGTTGATGGTGGTCATATTT 58.286 33.333 1.56 0.00 44.90 1.40
324 325 3.764434 TCGCCACTTCTCTTCTTCACTAT 59.236 43.478 0.00 0.00 0.00 2.12
345 346 3.325230 GCCTAGCGATTCATTTGTGTC 57.675 47.619 0.00 0.00 0.00 3.67
380 381 3.526931 TGTTCATTGCAACGGGAAAAA 57.473 38.095 0.00 0.00 0.00 1.94
385 386 0.031857 TGCTTGTTCATTGCAACGGG 59.968 50.000 0.00 0.00 33.48 5.28
395 396 4.916983 AGCTAACAAACATGCTTGTTCA 57.083 36.364 26.04 14.05 44.32 3.18
400 401 7.921786 TCAGTAATAGCTAACAAACATGCTT 57.078 32.000 0.00 0.00 37.02 3.91
413 414 9.601217 AAGTCGTTTTATCAATCAGTAATAGCT 57.399 29.630 0.00 0.00 0.00 3.32
463 464 7.308049 GCGATGTCCCTTAAAGATTTCTATTCC 60.308 40.741 0.00 0.00 0.00 3.01
469 470 6.920569 TTAGCGATGTCCCTTAAAGATTTC 57.079 37.500 0.00 0.00 0.00 2.17
474 475 3.877508 CCCTTTAGCGATGTCCCTTAAAG 59.122 47.826 0.00 0.00 0.00 1.85
475 476 3.881220 CCCTTTAGCGATGTCCCTTAAA 58.119 45.455 0.00 0.00 0.00 1.52
485 486 4.265073 GGATGAATATGCCCTTTAGCGAT 58.735 43.478 0.00 0.00 34.65 4.58
486 487 3.674997 GGATGAATATGCCCTTTAGCGA 58.325 45.455 0.00 0.00 34.65 4.93
487 488 2.416547 CGGATGAATATGCCCTTTAGCG 59.583 50.000 0.00 0.00 34.65 4.26
488 489 2.749621 CCGGATGAATATGCCCTTTAGC 59.250 50.000 0.00 0.00 0.00 3.09
489 490 4.003648 GACCGGATGAATATGCCCTTTAG 58.996 47.826 9.46 0.00 0.00 1.85
490 491 3.556213 CGACCGGATGAATATGCCCTTTA 60.556 47.826 9.46 0.00 0.00 1.85
491 492 2.810400 CGACCGGATGAATATGCCCTTT 60.810 50.000 9.46 0.00 0.00 3.11
492 493 1.270839 CGACCGGATGAATATGCCCTT 60.271 52.381 9.46 0.00 0.00 3.95
493 494 0.321671 CGACCGGATGAATATGCCCT 59.678 55.000 9.46 0.00 0.00 5.19
494 495 0.673644 CCGACCGGATGAATATGCCC 60.674 60.000 9.46 0.00 37.50 5.36
498 499 3.637229 CCTATAGCCGACCGGATGAATAT 59.363 47.826 9.46 3.43 37.50 1.28
504 505 0.614979 ATGCCTATAGCCGACCGGAT 60.615 55.000 9.46 8.74 42.71 4.18
509 510 2.094700 TGAATCGATGCCTATAGCCGAC 60.095 50.000 0.00 0.00 42.71 4.79
525 526 2.016318 TGGTCACATGCCGATTGAATC 58.984 47.619 0.00 0.00 0.00 2.52
526 527 2.127271 TGGTCACATGCCGATTGAAT 57.873 45.000 0.00 0.00 0.00 2.57
527 528 1.811965 CTTGGTCACATGCCGATTGAA 59.188 47.619 0.00 0.00 0.00 2.69
528 529 1.452110 CTTGGTCACATGCCGATTGA 58.548 50.000 0.00 0.00 0.00 2.57
529 530 0.179156 GCTTGGTCACATGCCGATTG 60.179 55.000 0.00 0.00 40.72 2.67
530 531 1.647545 CGCTTGGTCACATGCCGATT 61.648 55.000 0.00 0.00 42.86 3.34
531 532 2.108514 CGCTTGGTCACATGCCGAT 61.109 57.895 0.00 0.00 42.86 4.18
532 533 2.741985 CGCTTGGTCACATGCCGA 60.742 61.111 0.00 0.00 42.86 5.54
533 534 3.049674 ACGCTTGGTCACATGCCG 61.050 61.111 0.00 0.00 42.86 5.69
534 535 2.562912 CACGCTTGGTCACATGCC 59.437 61.111 0.00 0.00 42.86 4.40
535 536 2.126734 GCACGCTTGGTCACATGC 60.127 61.111 0.00 0.00 42.51 4.06
536 537 1.794151 TTGGCACGCTTGGTCACATG 61.794 55.000 0.00 0.00 0.00 3.21
537 538 0.895100 ATTGGCACGCTTGGTCACAT 60.895 50.000 0.00 0.00 0.00 3.21
576 577 9.787532 TCTGCAATTATACTATGTTCAAAAAGC 57.212 29.630 0.00 0.00 0.00 3.51
590 591 5.179368 ACATGTACGGCATCTGCAATTATAC 59.821 40.000 0.00 0.27 44.36 1.47
599 600 1.302366 ATGCACATGTACGGCATCTG 58.698 50.000 14.55 0.00 44.41 2.90
603 604 1.425267 GCGTATGCACATGTACGGCA 61.425 55.000 17.85 14.81 42.76 5.69
606 607 1.555477 TGAGCGTATGCACATGTACG 58.445 50.000 13.27 13.27 46.23 3.67
621 622 3.250762 TGTATGCGCTTAAATGGATGAGC 59.749 43.478 9.73 0.00 0.00 4.26
638 639 5.156608 TGAGGGTGAGATATGCATGTATG 57.843 43.478 10.16 0.00 0.00 2.39
642 643 4.634883 GCTTATGAGGGTGAGATATGCATG 59.365 45.833 10.16 0.00 0.00 4.06
643 644 4.287845 TGCTTATGAGGGTGAGATATGCAT 59.712 41.667 3.79 3.79 31.43 3.96
644 645 3.647590 TGCTTATGAGGGTGAGATATGCA 59.352 43.478 0.00 0.00 33.01 3.96
662 663 4.225942 TCATCCACTATCTTGAAGGTGCTT 59.774 41.667 0.00 0.00 0.00 3.91
692 695 8.175069 GCATGTGATGACTTCGTTAATCTTAAA 58.825 33.333 0.00 0.00 0.00 1.52
697 700 4.032900 ACGCATGTGATGACTTCGTTAATC 59.967 41.667 14.43 0.00 0.00 1.75
701 704 1.726791 GACGCATGTGATGACTTCGTT 59.273 47.619 14.43 0.00 0.00 3.85
703 706 1.585668 GAGACGCATGTGATGACTTCG 59.414 52.381 14.43 0.00 0.00 3.79
706 709 2.975732 ATGAGACGCATGTGATGACT 57.024 45.000 14.43 6.51 35.42 3.41
716 719 2.167662 TCTGGTTGACTATGAGACGCA 58.832 47.619 0.00 0.00 0.00 5.24
718 721 4.174411 TGTTCTGGTTGACTATGAGACG 57.826 45.455 0.00 0.00 0.00 4.18
722 725 6.126863 AGGAAATGTTCTGGTTGACTATGA 57.873 37.500 0.00 0.00 0.00 2.15
723 726 5.355350 GGAGGAAATGTTCTGGTTGACTATG 59.645 44.000 0.00 0.00 0.00 2.23
732 735 1.453155 CGTGGGAGGAAATGTTCTGG 58.547 55.000 0.00 0.00 0.00 3.86
733 736 1.003118 TCCGTGGGAGGAAATGTTCTG 59.997 52.381 0.00 0.00 37.36 3.02
746 750 1.006832 GACGATGATTGTTCCGTGGG 58.993 55.000 0.00 0.00 35.22 4.61
780 784 8.888716 GGTTGGTGTTTGTATTTTTCTGAATTT 58.111 29.630 0.00 0.00 0.00 1.82
803 807 5.827797 TCAAGCTCTAAATTTGACACTGGTT 59.172 36.000 0.00 0.00 0.00 3.67
806 810 7.025963 GGATTCAAGCTCTAAATTTGACACTG 58.974 38.462 0.00 0.00 31.11 3.66
816 820 6.538742 CAGTTTATCGGGATTCAAGCTCTAAA 59.461 38.462 0.00 0.00 0.00 1.85
822 826 5.757850 AATCAGTTTATCGGGATTCAAGC 57.242 39.130 0.00 0.00 0.00 4.01
826 830 6.593978 CGATGAAATCAGTTTATCGGGATTC 58.406 40.000 4.23 0.00 45.97 2.52
832 836 4.375405 CCTCGCGATGAAATCAGTTTATCG 60.375 45.833 10.36 7.58 45.97 2.92
839 843 0.933097 CACCCTCGCGATGAAATCAG 59.067 55.000 10.36 0.00 45.97 2.90
842 846 0.744414 CACCACCCTCGCGATGAAAT 60.744 55.000 10.36 0.00 0.00 2.17
850 854 1.515521 CTGTTTTCCACCACCCTCGC 61.516 60.000 0.00 0.00 0.00 5.03
851 855 0.179029 ACTGTTTTCCACCACCCTCG 60.179 55.000 0.00 0.00 0.00 4.63
852 856 2.067365 AACTGTTTTCCACCACCCTC 57.933 50.000 0.00 0.00 0.00 4.30
853 857 2.543037 AAACTGTTTTCCACCACCCT 57.457 45.000 0.00 0.00 0.00 4.34
854 858 3.527533 GAAAAACTGTTTTCCACCACCC 58.472 45.455 17.94 0.00 44.64 4.61
863 867 3.025262 TGCGTAGGGGAAAAACTGTTTT 58.975 40.909 12.50 12.50 39.70 2.43
864 868 2.359848 GTGCGTAGGGGAAAAACTGTTT 59.640 45.455 0.00 0.00 0.00 2.83
865 869 1.951602 GTGCGTAGGGGAAAAACTGTT 59.048 47.619 0.00 0.00 0.00 3.16
866 870 1.601166 GTGCGTAGGGGAAAAACTGT 58.399 50.000 0.00 0.00 0.00 3.55
867 871 0.879090 GGTGCGTAGGGGAAAAACTG 59.121 55.000 0.00 0.00 0.00 3.16
868 872 0.251033 GGGTGCGTAGGGGAAAAACT 60.251 55.000 0.00 0.00 0.00 2.66
869 873 1.579964 CGGGTGCGTAGGGGAAAAAC 61.580 60.000 0.00 0.00 0.00 2.43
870 874 1.302671 CGGGTGCGTAGGGGAAAAA 60.303 57.895 0.00 0.00 0.00 1.94
871 875 2.348243 CGGGTGCGTAGGGGAAAA 59.652 61.111 0.00 0.00 0.00 2.29
872 876 4.397832 GCGGGTGCGTAGGGGAAA 62.398 66.667 0.00 0.00 0.00 3.13
886 890 2.599677 AGAGGAGAATAACCCTAGCGG 58.400 52.381 0.00 0.00 31.84 5.52
887 891 4.218852 CCTAAGAGGAGAATAACCCTAGCG 59.781 50.000 0.00 0.00 37.67 4.26
888 892 4.020928 GCCTAAGAGGAGAATAACCCTAGC 60.021 50.000 0.00 0.00 37.67 3.42
889 893 4.218852 CGCCTAAGAGGAGAATAACCCTAG 59.781 50.000 0.00 0.00 37.36 3.02
890 894 4.141088 TCGCCTAAGAGGAGAATAACCCTA 60.141 45.833 0.00 0.00 41.33 3.53
891 895 2.966516 CGCCTAAGAGGAGAATAACCCT 59.033 50.000 0.00 0.00 37.36 4.34
892 896 2.963782 TCGCCTAAGAGGAGAATAACCC 59.036 50.000 0.00 0.00 41.33 4.11
900 904 1.309950 TCACGATCGCCTAAGAGGAG 58.690 55.000 16.60 0.00 37.67 3.69
901 905 1.880675 GATCACGATCGCCTAAGAGGA 59.119 52.381 16.60 0.64 37.67 3.71
902 906 2.339728 GATCACGATCGCCTAAGAGG 57.660 55.000 16.60 0.00 38.80 3.69
912 916 0.029567 ACTCGAAGGCGATCACGATC 59.970 55.000 0.00 0.00 46.80 3.69
913 917 0.456221 AACTCGAAGGCGATCACGAT 59.544 50.000 0.00 0.00 46.80 3.73
914 918 0.179171 GAACTCGAAGGCGATCACGA 60.179 55.000 0.00 0.00 46.80 4.35
915 919 1.140407 GGAACTCGAAGGCGATCACG 61.140 60.000 0.00 0.00 46.80 4.35
916 920 0.108804 TGGAACTCGAAGGCGATCAC 60.109 55.000 0.00 0.00 46.80 3.06
917 921 0.606096 TTGGAACTCGAAGGCGATCA 59.394 50.000 0.00 0.00 46.80 2.92
918 922 1.000145 GTTGGAACTCGAAGGCGATC 59.000 55.000 0.00 0.00 46.80 3.69
919 923 0.391263 GGTTGGAACTCGAAGGCGAT 60.391 55.000 0.00 0.00 46.80 4.58
920 924 1.005394 GGTTGGAACTCGAAGGCGA 60.005 57.895 0.00 0.00 45.71 5.54
921 925 1.004918 AGGTTGGAACTCGAAGGCG 60.005 57.895 0.00 0.00 39.35 5.52
922 926 0.673956 GGAGGTTGGAACTCGAAGGC 60.674 60.000 0.00 0.00 35.82 4.35
923 927 0.389948 CGGAGGTTGGAACTCGAAGG 60.390 60.000 0.00 0.00 35.82 3.46
924 928 3.123674 CGGAGGTTGGAACTCGAAG 57.876 57.895 0.00 0.00 35.82 3.79
948 952 4.351054 AAGGGTTGCAGGCCGAGG 62.351 66.667 0.00 0.00 0.00 4.63
949 953 3.058160 CAAGGGTTGCAGGCCGAG 61.058 66.667 0.00 0.00 0.00 4.63
958 962 4.597032 TGGGAACAGCAAGGGTTG 57.403 55.556 0.00 0.00 35.01 3.77
968 972 2.852075 AAGACCGCCCTGGGAACA 60.852 61.111 19.27 0.00 44.64 3.18
969 973 2.046217 GAAGACCGCCCTGGGAAC 60.046 66.667 19.27 3.83 44.64 3.62
970 974 1.846124 AAGAAGACCGCCCTGGGAA 60.846 57.895 19.27 0.00 44.64 3.97
971 975 2.203938 AAGAAGACCGCCCTGGGA 60.204 61.111 19.27 0.00 44.64 4.37
972 976 2.045926 CAAGAAGACCGCCCTGGG 60.046 66.667 8.86 8.86 44.64 4.45
973 977 2.747855 GCAAGAAGACCGCCCTGG 60.748 66.667 0.00 0.00 46.41 4.45
974 978 2.747855 GGCAAGAAGACCGCCCTG 60.748 66.667 0.00 0.00 40.07 4.45
980 984 3.647771 ACCCCGGGCAAGAAGACC 61.648 66.667 17.73 0.00 44.64 3.85
981 985 2.359975 CACCCCGGGCAAGAAGAC 60.360 66.667 17.73 0.00 0.00 3.01
982 986 3.646715 CCACCCCGGGCAAGAAGA 61.647 66.667 17.73 0.00 0.00 2.87
983 987 2.983879 ATCCACCCCGGGCAAGAAG 61.984 63.158 17.73 1.97 34.36 2.85
984 988 2.938798 ATCCACCCCGGGCAAGAA 60.939 61.111 17.73 0.00 34.36 2.52
985 989 3.727258 CATCCACCCCGGGCAAGA 61.727 66.667 17.73 11.33 34.36 3.02
986 990 4.820744 CCATCCACCCCGGGCAAG 62.821 72.222 17.73 3.81 34.36 4.01
992 996 4.530857 GAGACGCCATCCACCCCG 62.531 72.222 0.00 0.00 0.00 5.73
993 997 4.176752 GGAGACGCCATCCACCCC 62.177 72.222 0.00 0.00 36.79 4.95
994 998 4.176752 GGGAGACGCCATCCACCC 62.177 72.222 0.00 0.00 38.70 4.61
995 999 3.083997 AGGGAGACGCCATCCACC 61.084 66.667 0.00 0.00 38.70 4.61
996 1000 2.501610 GAGGGAGACGCCATCCAC 59.498 66.667 0.00 0.00 41.61 4.02
999 1003 2.203771 ATCGGAGGGAGACGCCATC 61.204 63.158 0.71 0.71 46.67 3.51
1000 1004 2.123251 ATCGGAGGGAGACGCCAT 60.123 61.111 0.00 0.00 39.29 4.40
1001 1005 3.147595 CATCGGAGGGAGACGCCA 61.148 66.667 0.00 0.00 39.29 5.69
1002 1006 4.593864 GCATCGGAGGGAGACGCC 62.594 72.222 0.00 0.00 35.41 5.68
1003 1007 3.492311 GAGCATCGGAGGGAGACGC 62.492 68.421 0.00 0.00 0.00 5.19
1004 1008 2.121538 TGAGCATCGGAGGGAGACG 61.122 63.158 0.00 0.00 38.61 4.18
1005 1009 1.040339 AGTGAGCATCGGAGGGAGAC 61.040 60.000 0.00 0.00 38.61 3.36
1006 1010 0.753479 GAGTGAGCATCGGAGGGAGA 60.753 60.000 0.00 0.00 38.61 3.71
1007 1011 1.739049 GAGTGAGCATCGGAGGGAG 59.261 63.158 0.00 0.00 38.61 4.30
1008 1012 1.758514 GGAGTGAGCATCGGAGGGA 60.759 63.158 0.00 0.00 38.61 4.20
1009 1013 2.818132 GGAGTGAGCATCGGAGGG 59.182 66.667 0.00 0.00 38.61 4.30
1010 1014 2.415010 CGGAGTGAGCATCGGAGG 59.585 66.667 0.00 0.00 38.61 4.30
1011 1015 2.279120 GCGGAGTGAGCATCGGAG 60.279 66.667 0.00 0.00 38.61 4.63
1012 1016 3.838271 GGCGGAGTGAGCATCGGA 61.838 66.667 0.00 0.00 38.61 4.55
1015 1019 4.819761 TGCGGCGGAGTGAGCATC 62.820 66.667 9.78 0.00 34.39 3.91
1016 1020 4.393155 TTGCGGCGGAGTGAGCAT 62.393 61.111 9.78 0.00 39.50 3.79
1047 1051 1.008538 GGTTTTGGCAGCAGTCACG 60.009 57.895 0.00 0.00 0.00 4.35
1049 1053 0.537143 ATCGGTTTTGGCAGCAGTCA 60.537 50.000 0.00 0.00 0.00 3.41
1051 1055 0.250901 AGATCGGTTTTGGCAGCAGT 60.251 50.000 0.00 0.00 0.00 4.40
1053 1057 1.243342 CCAGATCGGTTTTGGCAGCA 61.243 55.000 0.00 0.00 0.00 4.41
1056 1060 0.322456 CCTCCAGATCGGTTTTGGCA 60.322 55.000 3.97 0.00 35.57 4.92
1057 1061 0.035439 TCCTCCAGATCGGTTTTGGC 60.035 55.000 3.97 0.00 35.57 4.52
1061 1065 4.576330 AAGAAATCCTCCAGATCGGTTT 57.424 40.909 3.97 0.00 32.47 3.27
1062 1066 4.019321 TCAAAGAAATCCTCCAGATCGGTT 60.019 41.667 3.97 0.00 32.47 4.44
1090 1094 8.521170 TCGAACTCTTCCTCATTAAGATCTAA 57.479 34.615 0.00 0.00 32.72 2.10
1092 1096 6.040391 CCTCGAACTCTTCCTCATTAAGATCT 59.960 42.308 0.00 0.00 32.72 2.75
1098 1102 4.956700 ACATCCTCGAACTCTTCCTCATTA 59.043 41.667 0.00 0.00 0.00 1.90
1104 1108 1.550976 ACCACATCCTCGAACTCTTCC 59.449 52.381 0.00 0.00 0.00 3.46
1107 1111 3.066900 CGATTACCACATCCTCGAACTCT 59.933 47.826 0.00 0.00 0.00 3.24
1110 1114 3.114065 GTCGATTACCACATCCTCGAAC 58.886 50.000 0.00 0.00 39.73 3.95
1122 1126 2.557056 TGGATCATCCTCGTCGATTACC 59.443 50.000 4.96 0.00 37.46 2.85
1125 1129 2.556189 CTCTGGATCATCCTCGTCGATT 59.444 50.000 4.96 0.00 37.46 3.34
1128 1132 0.039617 GCTCTGGATCATCCTCGTCG 60.040 60.000 4.96 0.00 37.46 5.12
1131 1135 0.602562 GGAGCTCTGGATCATCCTCG 59.397 60.000 14.64 0.00 37.46 4.63
1146 1150 2.079925 CACCTAGCACTTTCTTGGAGC 58.920 52.381 0.00 0.00 33.94 4.70
1149 1153 1.168714 GCCACCTAGCACTTTCTTGG 58.831 55.000 0.00 0.00 35.52 3.61
1176 1180 0.541063 TCTCGGTGTGAACCCTAGCA 60.541 55.000 0.00 0.00 0.00 3.49
1188 1192 0.875059 GGCTGAAGGTTTTCTCGGTG 59.125 55.000 0.00 0.00 34.31 4.94
1191 1195 1.537202 CCTTGGCTGAAGGTTTTCTCG 59.463 52.381 6.84 0.00 45.85 4.04
1206 1210 1.026718 CCTTGTAGAAGGCGCCTTGG 61.027 60.000 44.71 32.36 42.60 3.61
1215 1219 5.229423 GCAGCTCTCATATCCTTGTAGAAG 58.771 45.833 0.00 0.00 0.00 2.85
1227 1231 0.175760 GGTTCCACGCAGCTCTCATA 59.824 55.000 0.00 0.00 0.00 2.15
1231 1235 4.379243 CGGGTTCCACGCAGCTCT 62.379 66.667 0.00 0.00 0.00 4.09
1245 1249 1.989966 ATCGTACACTCTGCGTCGGG 61.990 60.000 0.00 0.00 0.00 5.14
1248 1252 1.546834 GGAATCGTACACTCTGCGTC 58.453 55.000 0.00 0.00 0.00 5.19
1249 1253 0.179171 CGGAATCGTACACTCTGCGT 60.179 55.000 0.00 0.00 0.00 5.24
1257 1261 0.390603 CAACAGGCCGGAATCGTACA 60.391 55.000 10.86 0.00 33.95 2.90
1260 1264 1.375523 GTCAACAGGCCGGAATCGT 60.376 57.895 10.86 0.00 33.95 3.73
1261 1265 2.106683 GGTCAACAGGCCGGAATCG 61.107 63.158 10.86 0.00 0.00 3.34
1263 1267 2.355115 GGGTCAACAGGCCGGAAT 59.645 61.111 10.86 0.00 0.00 3.01
1277 1281 0.978907 AACTACGAACCGATTGGGGT 59.021 50.000 3.39 0.96 43.83 4.95
1278 1282 1.066716 TGAACTACGAACCGATTGGGG 60.067 52.381 3.39 0.00 41.60 4.96
1287 1291 2.030946 GCATGATGCCTGAACTACGAAC 59.969 50.000 6.04 0.00 37.42 3.95
1290 1294 1.945387 AGCATGATGCCTGAACTACG 58.055 50.000 14.72 0.00 46.52 3.51
1293 1297 1.471119 CCAAGCATGATGCCTGAACT 58.529 50.000 17.09 0.00 46.52 3.01
1296 1300 1.755395 GCCCAAGCATGATGCCTGA 60.755 57.895 17.09 0.00 46.52 3.86
1314 1318 3.365666 GCATCATCATACGCTCCCAATTG 60.366 47.826 0.00 0.00 0.00 2.32
1315 1319 2.816087 GCATCATCATACGCTCCCAATT 59.184 45.455 0.00 0.00 0.00 2.32
1329 1333 2.062971 ACCAAGGTCCATGCATCATC 57.937 50.000 0.00 0.00 0.00 2.92
1333 1337 1.895131 GAACAACCAAGGTCCATGCAT 59.105 47.619 0.00 0.00 0.00 3.96
1334 1338 1.327303 GAACAACCAAGGTCCATGCA 58.673 50.000 0.00 0.00 0.00 3.96
1338 1342 1.527380 GCGGAACAACCAAGGTCCA 60.527 57.895 0.00 0.00 38.90 4.02
1356 1360 2.006888 CATAGTAACACCGCCCAGTTG 58.993 52.381 0.00 0.00 0.00 3.16
1358 1362 0.107848 GCATAGTAACACCGCCCAGT 60.108 55.000 0.00 0.00 0.00 4.00
1365 1369 4.943705 CCATCATATGGGCATAGTAACACC 59.056 45.833 2.13 0.00 46.86 4.16
1397 1401 9.817809 TGTGAATAATACTTACATCCTCAGTTC 57.182 33.333 0.00 0.00 0.00 3.01
1401 1405 7.661437 GGCATGTGAATAATACTTACATCCTCA 59.339 37.037 0.00 0.00 30.15 3.86
1431 1435 1.636148 ACTTGTGGATTTGCAGCCAT 58.364 45.000 8.07 0.00 36.41 4.40
1446 1450 6.595326 TCTTGCAATAGACATCTGGTAACTTG 59.405 38.462 0.00 0.00 37.61 3.16
1450 1454 6.946340 TCTTCTTGCAATAGACATCTGGTAA 58.054 36.000 0.00 0.00 0.00 2.85
1452 1456 5.426689 TCTTCTTGCAATAGACATCTGGT 57.573 39.130 0.00 0.00 0.00 4.00
1461 1465 6.258230 TCCACAATGTTCTTCTTGCAATAG 57.742 37.500 0.00 0.54 0.00 1.73
1464 1468 4.998671 TTCCACAATGTTCTTCTTGCAA 57.001 36.364 0.00 0.00 0.00 4.08
1479 1483 2.760092 ACTTTTCAGCAGCTTTTCCACA 59.240 40.909 0.00 0.00 0.00 4.17
1491 1495 3.375782 AATTCACCTGCACTTTTCAGC 57.624 42.857 0.00 0.00 0.00 4.26
1497 1501 4.922206 TCTCCATTAATTCACCTGCACTT 58.078 39.130 0.00 0.00 0.00 3.16
1498 1502 4.574674 TCTCCATTAATTCACCTGCACT 57.425 40.909 0.00 0.00 0.00 4.40
1506 1510 6.507958 TTCAAACGCATCTCCATTAATTCA 57.492 33.333 0.00 0.00 0.00 2.57
1509 1513 5.593909 TCCATTCAAACGCATCTCCATTAAT 59.406 36.000 0.00 0.00 0.00 1.40
1510 1514 4.946772 TCCATTCAAACGCATCTCCATTAA 59.053 37.500 0.00 0.00 0.00 1.40
1512 1516 3.355378 TCCATTCAAACGCATCTCCATT 58.645 40.909 0.00 0.00 0.00 3.16
1528 1532 6.721208 ACATAATCAACTCTGGTGTTTCCATT 59.279 34.615 0.00 0.00 46.12 3.16
1530 1534 5.630121 ACATAATCAACTCTGGTGTTTCCA 58.370 37.500 0.00 0.00 45.01 3.53
1533 1537 6.659242 CCCTTACATAATCAACTCTGGTGTTT 59.341 38.462 0.00 0.00 0.00 2.83
1538 1542 5.989477 TCACCCTTACATAATCAACTCTGG 58.011 41.667 0.00 0.00 0.00 3.86
1542 1546 4.788617 ACCCTCACCCTTACATAATCAACT 59.211 41.667 0.00 0.00 0.00 3.16
1544 1548 4.785914 TCACCCTCACCCTTACATAATCAA 59.214 41.667 0.00 0.00 0.00 2.57
1545 1549 4.367166 TCACCCTCACCCTTACATAATCA 58.633 43.478 0.00 0.00 0.00 2.57
1551 1555 2.128535 TGTTTCACCCTCACCCTTACA 58.871 47.619 0.00 0.00 0.00 2.41
1555 1559 1.073923 GTCATGTTTCACCCTCACCCT 59.926 52.381 0.00 0.00 0.00 4.34
1557 1561 1.880027 GTGTCATGTTTCACCCTCACC 59.120 52.381 0.00 0.00 0.00 4.02
1558 1562 1.880027 GGTGTCATGTTTCACCCTCAC 59.120 52.381 19.06 0.00 45.70 3.51
1566 1570 1.079503 GCTCTCGGGTGTCATGTTTC 58.920 55.000 0.00 0.00 0.00 2.78
1575 1579 2.888863 GTCAGAGGCTCTCGGGTG 59.111 66.667 15.60 4.01 35.36 4.61
1577 1581 1.595993 TTTCGTCAGAGGCTCTCGGG 61.596 60.000 21.08 9.43 35.36 5.14
1579 1583 2.285827 AATTTCGTCAGAGGCTCTCG 57.714 50.000 15.60 16.39 35.36 4.04
1580 1584 3.124297 CACAAATTTCGTCAGAGGCTCTC 59.876 47.826 15.60 3.32 0.00 3.20
1581 1585 3.070018 CACAAATTTCGTCAGAGGCTCT 58.930 45.455 12.24 12.24 0.00 4.09
1583 1587 3.070018 CTCACAAATTTCGTCAGAGGCT 58.930 45.455 0.00 0.00 0.00 4.58
1584 1588 2.413371 GCTCACAAATTTCGTCAGAGGC 60.413 50.000 0.00 0.00 0.00 4.70
1587 1591 4.275689 ACAATGCTCACAAATTTCGTCAGA 59.724 37.500 0.00 0.00 0.00 3.27
1598 1602 2.291209 ACCATGGACAATGCTCACAA 57.709 45.000 21.47 0.00 34.67 3.33
1605 1609 4.454161 TGTCGTTCTTTACCATGGACAATG 59.546 41.667 21.47 13.49 35.89 2.82
1611 1615 3.053831 ACCTGTCGTTCTTTACCATGG 57.946 47.619 11.19 11.19 0.00 3.66
1614 1618 6.105397 AGATAAACCTGTCGTTCTTTACCA 57.895 37.500 0.00 0.00 31.78 3.25
1618 1622 6.292703 CGAACAAGATAAACCTGTCGTTCTTT 60.293 38.462 0.00 0.00 31.78 2.52
1619 1623 5.176958 CGAACAAGATAAACCTGTCGTTCTT 59.823 40.000 0.00 0.00 31.78 2.52
1620 1624 4.684703 CGAACAAGATAAACCTGTCGTTCT 59.315 41.667 0.00 0.00 31.78 3.01
1622 1626 3.185797 GCGAACAAGATAAACCTGTCGTT 59.814 43.478 0.00 0.00 35.70 3.85
1623 1627 2.735134 GCGAACAAGATAAACCTGTCGT 59.265 45.455 0.00 0.00 0.00 4.34
1626 1630 5.730550 TCATAGCGAACAAGATAAACCTGT 58.269 37.500 0.00 0.00 0.00 4.00
1632 1636 7.487829 GCCAATTTTTCATAGCGAACAAGATAA 59.512 33.333 0.00 0.00 31.73 1.75
1635 1639 5.160641 GCCAATTTTTCATAGCGAACAAGA 58.839 37.500 0.00 0.00 31.73 3.02
1644 1648 5.163963 GCAAAACCTCGCCAATTTTTCATAG 60.164 40.000 0.00 0.00 0.00 2.23
1650 1654 2.611225 TGCAAAACCTCGCCAATTTT 57.389 40.000 0.00 0.00 0.00 1.82
1653 1657 0.318120 CCTTGCAAAACCTCGCCAAT 59.682 50.000 0.00 0.00 0.00 3.16
1659 1663 1.480545 ACCACAACCTTGCAAAACCTC 59.519 47.619 0.00 0.00 0.00 3.85
1661 1665 1.480545 AGACCACAACCTTGCAAAACC 59.519 47.619 0.00 0.00 0.00 3.27
1662 1666 2.539476 CAGACCACAACCTTGCAAAAC 58.461 47.619 0.00 0.00 0.00 2.43
1665 1669 0.033601 ACCAGACCACAACCTTGCAA 60.034 50.000 0.00 0.00 0.00 4.08
1670 1674 1.489560 GGCCTACCAGACCACAACCT 61.490 60.000 0.00 0.00 35.26 3.50
1671 1675 1.002502 GGCCTACCAGACCACAACC 60.003 63.158 0.00 0.00 35.26 3.77
1672 1676 1.758592 TGGCCTACCAGACCACAAC 59.241 57.895 3.32 0.00 42.67 3.32
1709 1714 1.358152 TTTCCTCATGGACTCCCGTT 58.642 50.000 0.00 0.00 43.06 4.44
1711 1716 1.555075 TCTTTTCCTCATGGACTCCCG 59.445 52.381 0.00 0.00 43.06 5.14
1712 1717 3.721087 TTCTTTTCCTCATGGACTCCC 57.279 47.619 0.00 0.00 43.06 4.30
1715 1720 7.601705 TTTCAAATTCTTTTCCTCATGGACT 57.398 32.000 0.00 0.00 43.06 3.85
1716 1721 8.837788 AATTTCAAATTCTTTTCCTCATGGAC 57.162 30.769 0.00 0.00 43.06 4.02
1718 1723 7.063780 CCGAATTTCAAATTCTTTTCCTCATGG 59.936 37.037 18.62 6.52 0.00 3.66
1727 1732 5.279456 CCACTCCCCGAATTTCAAATTCTTT 60.279 40.000 18.62 0.00 0.00 2.52
1731 1736 3.506398 ACCACTCCCCGAATTTCAAATT 58.494 40.909 0.00 0.00 0.00 1.82
1734 1739 2.668144 AACCACTCCCCGAATTTCAA 57.332 45.000 0.00 0.00 0.00 2.69
1739 1744 2.979678 AGCATATAACCACTCCCCGAAT 59.020 45.455 0.00 0.00 0.00 3.34
1742 1747 1.691976 TCAGCATATAACCACTCCCCG 59.308 52.381 0.00 0.00 0.00 5.73
1745 1750 3.999663 GAGCATCAGCATATAACCACTCC 59.000 47.826 0.00 0.00 45.49 3.85
1746 1751 3.999663 GGAGCATCAGCATATAACCACTC 59.000 47.826 0.00 0.00 45.49 3.51
1747 1752 3.244700 GGGAGCATCAGCATATAACCACT 60.245 47.826 0.00 0.00 45.49 4.00
1748 1753 3.077359 GGGAGCATCAGCATATAACCAC 58.923 50.000 0.00 0.00 45.49 4.16
1749 1754 2.710471 TGGGAGCATCAGCATATAACCA 59.290 45.455 0.00 0.00 45.49 3.67
1750 1755 3.423539 TGGGAGCATCAGCATATAACC 57.576 47.619 0.00 0.00 45.49 2.85
1751 1756 4.136796 TGTTGGGAGCATCAGCATATAAC 58.863 43.478 0.00 0.00 45.49 1.89
1752 1757 4.436113 TGTTGGGAGCATCAGCATATAA 57.564 40.909 0.00 0.00 45.49 0.98
1753 1758 4.436113 TTGTTGGGAGCATCAGCATATA 57.564 40.909 0.00 0.00 45.49 0.86
1754 1759 3.301794 TTGTTGGGAGCATCAGCATAT 57.698 42.857 0.00 0.00 45.49 1.78
1755 1760 2.754552 GTTTGTTGGGAGCATCAGCATA 59.245 45.455 0.00 0.00 45.49 3.14
1756 1761 1.547372 GTTTGTTGGGAGCATCAGCAT 59.453 47.619 0.00 0.00 45.49 3.79
1757 1762 0.961019 GTTTGTTGGGAGCATCAGCA 59.039 50.000 0.00 0.00 45.49 4.41
1758 1763 1.068055 CAGTTTGTTGGGAGCATCAGC 60.068 52.381 0.00 0.00 42.56 4.26
1759 1764 2.507484 TCAGTTTGTTGGGAGCATCAG 58.493 47.619 0.00 0.00 36.25 2.90
1760 1765 2.655090 TCAGTTTGTTGGGAGCATCA 57.345 45.000 0.00 0.00 36.25 3.07
1761 1766 3.063997 CGTATCAGTTTGTTGGGAGCATC 59.936 47.826 0.00 0.00 0.00 3.91
1762 1767 3.009723 CGTATCAGTTTGTTGGGAGCAT 58.990 45.455 0.00 0.00 0.00 3.79
1763 1768 2.224426 ACGTATCAGTTTGTTGGGAGCA 60.224 45.455 0.00 0.00 0.00 4.26
1764 1769 2.415512 GACGTATCAGTTTGTTGGGAGC 59.584 50.000 0.00 0.00 0.00 4.70
1765 1770 3.926616 AGACGTATCAGTTTGTTGGGAG 58.073 45.455 0.00 0.00 0.00 4.30
1766 1771 3.306502 GGAGACGTATCAGTTTGTTGGGA 60.307 47.826 12.92 0.00 0.00 4.37
1767 1772 3.000727 GGAGACGTATCAGTTTGTTGGG 58.999 50.000 12.92 0.00 0.00 4.12
1768 1773 3.659786 TGGAGACGTATCAGTTTGTTGG 58.340 45.455 12.92 0.00 0.00 3.77
1769 1774 4.376008 CGTTGGAGACGTATCAGTTTGTTG 60.376 45.833 12.92 0.00 46.49 3.33
1770 1775 3.739300 CGTTGGAGACGTATCAGTTTGTT 59.261 43.478 12.92 0.00 46.49 2.83
1771 1776 3.314553 CGTTGGAGACGTATCAGTTTGT 58.685 45.455 12.92 0.00 46.49 2.83
1772 1777 3.972706 CGTTGGAGACGTATCAGTTTG 57.027 47.619 12.92 0.00 46.49 2.93
1962 1968 0.605319 GGCACGTCAATTGGACTCCA 60.605 55.000 5.42 0.00 44.68 3.86
2018 2024 2.579201 CCAACTCCGATGCTCCGT 59.421 61.111 0.00 0.00 0.00 4.69
2026 2032 1.535444 TCTTCTGGCCCAACTCCGA 60.535 57.895 0.00 0.00 0.00 4.55
2027 2033 1.078848 CTCTTCTGGCCCAACTCCG 60.079 63.158 0.00 0.00 0.00 4.63
2028 2034 0.035915 GACTCTTCTGGCCCAACTCC 60.036 60.000 0.00 0.00 0.00 3.85
2107 2123 2.370445 ATCAAGGAGGTGCCCGAGG 61.370 63.158 0.00 0.00 37.37 4.63
2125 2141 2.404923 TTTTTGGTGTCGGTCTCACA 57.595 45.000 0.00 0.00 37.52 3.58
2167 2183 7.769507 GGAACTTCCGATCTAGGTTAATTTTCT 59.230 37.037 0.00 0.00 0.00 2.52
2396 2413 2.046864 CGCCACCGAGAGAGAGGAA 61.047 63.158 0.00 0.00 36.29 3.36
2496 2525 4.021925 GCGGGGTGCAGGAGAGTT 62.022 66.667 0.00 0.00 45.45 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.