AutoCloner

Multiple sequence alignment - TraesCS3D01G111800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G111800	chr3D	100.000	2369	0	0	1	2369	66240840	66238472	0.000000e+00	4375.0
1	TraesCS3D01G111800	chr3D	97.490	717	17	1	978	1693	85245128	85245844	0.000000e+00	1223.0
2	TraesCS3D01G111800	chr3D	94.505	728	36	3	978	1702	29164126	29163400	0.000000e+00	1120.0
3	TraesCS3D01G111800	chr3D	94.618	576	19	8	1805	2369	569061859	569062433	0.000000e+00	881.0
4	TraesCS3D01G111800	chr3D	96.296	162	6	0	1	162	85244983	85245144	1.400000e-67	267.0
5	TraesCS3D01G111800	chr3D	92.593	162	12	0	1	162	29164271	29164110	1.420000e-57	233.0
6	TraesCS3D01G111800	chr7D	98.905	822	8	1	158	978	141594392	141595213	0.000000e+00	1467.0
7	TraesCS3D01G111800	chr7D	98.545	825	11	1	158	981	82772954	82773778	0.000000e+00	1456.0
8	TraesCS3D01G111800	chr7D	97.531	162	4	0	1	162	94921770	94921931	6.450000e-71	278.0
9	TraesCS3D01G111800	chr5D	98.783	822	9	1	158	978	101573380	101574201	0.000000e+00	1461.0
10	TraesCS3D01G111800	chr5D	95.179	726	33	2	978	1703	510610965	510610242	0.000000e+00	1146.0
11	TraesCS3D01G111800	chr5D	93.352	722	45	3	978	1698	552348874	552348155	0.000000e+00	1064.0
12	TraesCS3D01G111800	chr5D	95.606	569	13	8	1806	2369	8703241	8703802	0.000000e+00	902.0
13	TraesCS3D01G111800	chr5D	95.062	162	8	0	1	162	510611110	510610949	3.020000e-64	255.0
14	TraesCS3D01G111800	chr5D	91.975	162	13	0	1	162	552349019	552348858	6.590000e-56	228.0
15	TraesCS3D01G111800	chr2D	98.663	823	9	2	158	979	642489235	642490056	0.000000e+00	1458.0
16	TraesCS3D01G111800	chr2D	98.659	820	10	1	161	979	438903086	438902267	0.000000e+00	1452.0
17	TraesCS3D01G111800	chr2D	98.293	820	13	1	161	979	26968335	26967516	0.000000e+00	1435.0
18	TraesCS3D01G111800	chr2D	95.845	722	29	1	978	1698	616452252	616452973	0.000000e+00	1166.0
19	TraesCS3D01G111800	chr2D	96.296	162	6	0	1	162	616452107	616452268	1.400000e-67	267.0
20	TraesCS3D01G111800	chr1D	98.542	823	11	1	158	979	235461001	235461823	0.000000e+00	1452.0
21	TraesCS3D01G111800	chr1D	98.295	821	12	2	161	979	189388378	189387558	0.000000e+00	1437.0
22	TraesCS3D01G111800	chr1D	95.767	567	20	3	1806	2369	278094244	278094809	0.000000e+00	911.0
23	TraesCS3D01G111800	chr4D	97.939	825	13	2	158	981	20032912	20033733	0.000000e+00	1426.0
24	TraesCS3D01G111800	chr4D	95.688	719	28	3	978	1695	141599548	141600264	0.000000e+00	1153.0
25	TraesCS3D01G111800	chr4D	94.621	725	37	2	978	1701	280777051	280776328	0.000000e+00	1122.0
26	TraesCS3D01G111800	chr4D	97.531	162	4	0	1	162	141599403	141599564	6.450000e-71	278.0
27	TraesCS3D01G111800	chr2A	90.582	722	66	2	978	1698	655520108	655520828	0.000000e+00	955.0
28	TraesCS3D01G111800	chr2A	94.444	576	23	5	1801	2368	721914710	721915284	0.000000e+00	878.0
29	TraesCS3D01G111800	chr1B	90.496	726	65	4	978	1701	593501664	593500941	0.000000e+00	955.0
30	TraesCS3D01G111800	chr4A	94.755	572	22	3	1805	2369	477293326	477292756	0.000000e+00	883.0
31	TraesCS3D01G111800	chr3B	94.580	572	25	5	1801	2369	480336690	480337258	0.000000e+00	880.0
32	TraesCS3D01G111800	chr5B	93.825	583	27	7	1794	2369	166706363	166706943	0.000000e+00	869.0
33	TraesCS3D01G111800	chr5B	92.667	600	31	10	1772	2369	511015814	511016402	0.000000e+00	852.0
34	TraesCS3D01G111800	chr3A	89.530	659	51	13	1716	2369	538855152	538855797	0.000000e+00	819.0
35	TraesCS3D01G111800	chr2B	91.250	160	14	0	1	160	106711874	106711715	3.960000e-53	219.0
36	TraesCS3D01G111800	chr2B	87.805	82	9	1	1704	1785	687885629	687885709	6.970000e-16	95.3
37	TraesCS3D01G111800	chr5A	90.741	162	15	0	1	162	709707617	709707456	1.430000e-52	217.0
38	TraesCS3D01G111800	chr1A	89.362	94	9	1	1705	1798	107932364	107932272	1.490000e-22	117.0
39	TraesCS3D01G111800	chr1A	89.024	82	7	1	1717	1798	272003746	272003667	1.500000e-17	100.0
40	TraesCS3D01G111800	chr7A	81.022	137	23	3	1717	1851	494192398	494192263	3.220000e-19	106.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G111800	chr3D	66238472	66240840	2368	True	4375.0	4375	100.0000	1	2369	1	chr3D.!!$R1	2368
1	TraesCS3D01G111800	chr3D	569061859	569062433	574	False	881.0	881	94.6180	1805	2369	1	chr3D.!!$F1	564
2	TraesCS3D01G111800	chr3D	85244983	85245844	861	False	745.0	1223	96.8930	1	1693	2	chr3D.!!$F2	1692
3	TraesCS3D01G111800	chr3D	29163400	29164271	871	True	676.5	1120	93.5490	1	1702	2	chr3D.!!$R2	1701
4	TraesCS3D01G111800	chr7D	141594392	141595213	821	False	1467.0	1467	98.9050	158	978	1	chr7D.!!$F3	820
5	TraesCS3D01G111800	chr7D	82772954	82773778	824	False	1456.0	1456	98.5450	158	981	1	chr7D.!!$F1	823
6	TraesCS3D01G111800	chr5D	101573380	101574201	821	False	1461.0	1461	98.7830	158	978	1	chr5D.!!$F2	820
7	TraesCS3D01G111800	chr5D	8703241	8703802	561	False	902.0	902	95.6060	1806	2369	1	chr5D.!!$F1	563
8	TraesCS3D01G111800	chr5D	510610242	510611110	868	True	700.5	1146	95.1205	1	1703	2	chr5D.!!$R1	1702
9	TraesCS3D01G111800	chr5D	552348155	552349019	864	True	646.0	1064	92.6635	1	1698	2	chr5D.!!$R2	1697
10	TraesCS3D01G111800	chr2D	642489235	642490056	821	False	1458.0	1458	98.6630	158	979	1	chr2D.!!$F1	821
11	TraesCS3D01G111800	chr2D	438902267	438903086	819	True	1452.0	1452	98.6590	161	979	1	chr2D.!!$R2	818
12	TraesCS3D01G111800	chr2D	26967516	26968335	819	True	1435.0	1435	98.2930	161	979	1	chr2D.!!$R1	818
13	TraesCS3D01G111800	chr2D	616452107	616452973	866	False	716.5	1166	96.0705	1	1698	2	chr2D.!!$F2	1697
14	TraesCS3D01G111800	chr1D	235461001	235461823	822	False	1452.0	1452	98.5420	158	979	1	chr1D.!!$F1	821
15	TraesCS3D01G111800	chr1D	189387558	189388378	820	True	1437.0	1437	98.2950	161	979	1	chr1D.!!$R1	818
16	TraesCS3D01G111800	chr1D	278094244	278094809	565	False	911.0	911	95.7670	1806	2369	1	chr1D.!!$F2	563
17	TraesCS3D01G111800	chr4D	20032912	20033733	821	False	1426.0	1426	97.9390	158	981	1	chr4D.!!$F1	823
18	TraesCS3D01G111800	chr4D	280776328	280777051	723	True	1122.0	1122	94.6210	978	1701	1	chr4D.!!$R1	723
19	TraesCS3D01G111800	chr4D	141599403	141600264	861	False	715.5	1153	96.6095	1	1695	2	chr4D.!!$F2	1694
20	TraesCS3D01G111800	chr2A	655520108	655520828	720	False	955.0	955	90.5820	978	1698	1	chr2A.!!$F1	720
21	TraesCS3D01G111800	chr2A	721914710	721915284	574	False	878.0	878	94.4440	1801	2368	1	chr2A.!!$F2	567
22	TraesCS3D01G111800	chr1B	593500941	593501664	723	True	955.0	955	90.4960	978	1701	1	chr1B.!!$R1	723
23	TraesCS3D01G111800	chr4A	477292756	477293326	570	True	883.0	883	94.7550	1805	2369	1	chr4A.!!$R1	564
24	TraesCS3D01G111800	chr3B	480336690	480337258	568	False	880.0	880	94.5800	1801	2369	1	chr3B.!!$F1	568
25	TraesCS3D01G111800	chr5B	166706363	166706943	580	False	869.0	869	93.8250	1794	2369	1	chr5B.!!$F1	575
26	TraesCS3D01G111800	chr5B	511015814	511016402	588	False	852.0	852	92.6670	1772	2369	1	chr5B.!!$F2	597
27	TraesCS3D01G111800	chr3A	538855152	538855797	645	False	819.0	819	89.5300	1716	2369	1	chr3A.!!$F1	653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
150	151	0.039527	GGTGGAAACGGTGCAACATC	60.04	55.0	0.98	0.0	39.98	3.06	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1733	1743	0.396811	AACGTCCCCCTGTTTCTGAG	59.603	55.0	0.0	0.0	0.0	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
145	146	0.681564	AAACAGGTGGAAACGGTGCA	60.682	50.000	0.00	0.00	0.00	4.57
146	147	0.681564	AACAGGTGGAAACGGTGCAA	60.682	50.000	0.00	0.00	0.00	4.08
147	148	1.358759	CAGGTGGAAACGGTGCAAC	59.641	57.895	0.00	0.00	34.94	4.17
148	149	1.077357	AGGTGGAAACGGTGCAACA	60.077	52.632	0.98	0.00	37.85	3.33
149	150	0.467290	AGGTGGAAACGGTGCAACAT	60.467	50.000	0.98	0.00	37.85	2.71
150	151	0.039527	GGTGGAAACGGTGCAACATC	60.040	55.000	0.98	0.00	39.98	3.06
151	152	0.951558	GTGGAAACGGTGCAACATCT	59.048	50.000	0.98	0.00	39.98	2.90
152	153	0.950836	TGGAAACGGTGCAACATCTG	59.049	50.000	0.98	0.00	39.98	2.90
153	154	0.951558	GGAAACGGTGCAACATCTGT	59.048	50.000	0.98	0.00	39.98	3.41
154	155	1.336755	GGAAACGGTGCAACATCTGTT	59.663	47.619	0.98	0.00	39.98	3.16
155	156	2.604614	GGAAACGGTGCAACATCTGTTC	60.605	50.000	0.98	0.00	39.98	3.18
156	157	1.967319	AACGGTGCAACATCTGTTCT	58.033	45.000	0.98	0.00	39.98	3.01
424	426	1.619654	TCAAGATGTTTGGGTGGCTG	58.380	50.000	0.00	0.00	0.00	4.85
946	949	6.183361	TGTGAGTAATACAAAGTCAGTGGGAA	60.183	38.462	0.00	0.00	0.00	3.97
1000	1003	3.181434	ACATCTGTTCTTTACTTGCCCCA	60.181	43.478	0.00	0.00	0.00	4.96
1078	1081	4.565166	CGTCGAATTACTGGCAATACTTCA	59.435	41.667	6.82	0.00	0.00	3.02
1215	1220	8.786898	CAAATCAAGACTCCTTTTGAGATTGTA	58.213	33.333	0.00	0.00	44.42	2.41
1249	1254	6.769512	TGCTCTTTTCTACTTTACTGGACAT	58.230	36.000	0.00	0.00	0.00	3.06
1420	1427	3.626244	GGCGCGCGATTTCGATGA	61.626	61.111	37.18	0.00	43.02	2.92
1601	1609	3.008704	GGGTTTCCTGGTAGTGCTAGAAA	59.991	47.826	0.00	0.00	0.00	2.52
1724	1734	3.374058	CCACACTTTAAGTAGGATTGCGG	59.626	47.826	9.34	0.00	0.00	5.69
1728	1738	5.180271	CACTTTAAGTAGGATTGCGGGTTA	58.820	41.667	0.00	0.00	0.00	2.85
1730	1740	6.317893	CACTTTAAGTAGGATTGCGGGTTAAT	59.682	38.462	0.00	0.00	0.00	1.40
1732	1742	7.395206	ACTTTAAGTAGGATTGCGGGTTAATTT	59.605	33.333	0.00	0.00	0.00	1.82
1733	1743	5.830000	AAGTAGGATTGCGGGTTAATTTC	57.170	39.130	0.00	0.00	0.00	2.17
1734	1744	5.112129	AGTAGGATTGCGGGTTAATTTCT	57.888	39.130	0.00	0.00	0.00	2.52
1737	1747	3.947834	AGGATTGCGGGTTAATTTCTCAG	59.052	43.478	0.00	0.00	0.00	3.35
1740	1750	5.105917	GGATTGCGGGTTAATTTCTCAGAAA	60.106	40.000	1.30	1.30	0.00	2.52
1743	1753	4.215399	TGCGGGTTAATTTCTCAGAAACAG	59.785	41.667	0.68	0.00	0.00	3.16
1744	1754	4.379499	GCGGGTTAATTTCTCAGAAACAGG	60.379	45.833	0.68	0.00	0.00	4.00
1745	1755	4.156008	CGGGTTAATTTCTCAGAAACAGGG	59.844	45.833	0.68	0.00	0.00	4.45
1748	1758	5.321927	GTTAATTTCTCAGAAACAGGGGGA	58.678	41.667	0.68	0.00	0.00	4.81
1750	1760	0.685097	TTCTCAGAAACAGGGGGACG	59.315	55.000	0.00	0.00	0.00	4.79
1761	1771	1.069978	CAGGGGGACGTTTTTGCAAAT	59.930	47.619	13.65	0.00	0.00	2.32
1763	1773	2.966516	AGGGGGACGTTTTTGCAAATAA	59.033	40.909	13.65	7.61	0.00	1.40
1767	1777	3.385577	GGACGTTTTTGCAAATAAGCCA	58.614	40.909	13.65	0.00	0.00	4.75
1768	1778	3.804873	GGACGTTTTTGCAAATAAGCCAA	59.195	39.130	13.65	0.00	0.00	4.52
1774	1784	0.519519	TGCAAATAAGCCAACGACGG	59.480	50.000	0.00	0.00	0.00	4.79
1786	1796	0.748450	AACGACGGACAACCAGAAGA	59.252	50.000	0.00	0.00	35.59	2.87
1791	1801	2.412089	GACGGACAACCAGAAGAAATCG	59.588	50.000	0.00	0.00	35.59	3.34
1799	1809	1.394917	CCAGAAGAAATCGCTGGTTCG	59.605	52.381	13.76	0.00	43.25	3.95
1862	1872	7.387948	AGAGAAAACATAACACACGCTCTTAAT	59.612	33.333	0.00	0.00	0.00	1.40
1948	1958	1.004277	TGTTGCCGCTTATCCTCCTTT	59.996	47.619	0.00	0.00	0.00	3.11
1964	1974	2.233007	CTTTTCACTCTCGCTGGCGC	62.233	60.000	10.28	0.00	39.59	6.53
2056	2070	1.541672	CTCTCTCCTCCCTCTCCCC	59.458	68.421	0.00	0.00	0.00	4.81
2210	2245	3.507786	GGTGTTTATTTGCAATCGGGAC	58.492	45.455	0.00	0.00	0.00	4.46

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
146	147	9.708092	GTAAGAACCTTAGTAAAGAACAGATGT	57.292	33.333	0.00	0.00	34.37	3.06
147	148	9.930693	AGTAAGAACCTTAGTAAAGAACAGATG	57.069	33.333	0.00	0.00	34.37	2.90
149	150	9.978044	GAAGTAAGAACCTTAGTAAAGAACAGA	57.022	33.333	0.00	0.00	34.37	3.41
150	151	9.760077	TGAAGTAAGAACCTTAGTAAAGAACAG	57.240	33.333	0.00	0.00	34.37	3.16
154	155	9.760077	CAGTTGAAGTAAGAACCTTAGTAAAGA	57.240	33.333	0.00	0.00	34.37	2.52
155	156	9.760077	TCAGTTGAAGTAAGAACCTTAGTAAAG	57.240	33.333	0.00	0.00	0.00	1.85
156	157	9.538508	GTCAGTTGAAGTAAGAACCTTAGTAAA	57.461	33.333	0.00	0.00	0.00	2.01
174	175	1.275666	ATCGTGGATGGGTCAGTTGA	58.724	50.000	0.00	0.00	0.00	3.18
424	426	3.784701	TTCAGACGATCAACTAGGAGC	57.215	47.619	0.00	0.00	0.00	4.70
555	557	1.774856	AGCAGTGTTGACTAAAGGGGT	59.225	47.619	0.00	0.00	0.00	4.95
946	949	0.178958	AGAACGACAGTGGGAGAGGT	60.179	55.000	0.00	0.00	0.00	3.85
1078	1081	5.025453	AGGAAGAAATTTGTGGCACCATAT	58.975	37.500	16.26	2.75	0.00	1.78
1249	1254	1.623811	GTCCTCTCCTTGTTGTAGCCA	59.376	52.381	0.00	0.00	0.00	4.75
1323	1328	2.816087	GACAGCACCACACATCTTCATT	59.184	45.455	0.00	0.00	0.00	2.57
1601	1609	4.484912	AGAAGGGAAAGAGGTATAGCGAT	58.515	43.478	0.00	0.00	0.00	4.58
1703	1713	3.374058	CCCGCAATCCTACTTAAAGTGTG	59.626	47.826	0.00	0.00	0.00	3.82
1704	1714	3.008704	ACCCGCAATCCTACTTAAAGTGT	59.991	43.478	0.00	0.00	0.00	3.55
1705	1715	3.606687	ACCCGCAATCCTACTTAAAGTG	58.393	45.455	0.00	0.00	0.00	3.16
1706	1716	3.994931	ACCCGCAATCCTACTTAAAGT	57.005	42.857	0.00	0.00	0.00	2.66
1707	1717	6.937436	ATTAACCCGCAATCCTACTTAAAG	57.063	37.500	0.00	0.00	0.00	1.85
1708	1718	7.612633	AGAAATTAACCCGCAATCCTACTTAAA	59.387	33.333	0.00	0.00	0.00	1.52
1709	1719	7.114095	AGAAATTAACCCGCAATCCTACTTAA	58.886	34.615	0.00	0.00	0.00	1.85
1710	1720	6.655930	AGAAATTAACCCGCAATCCTACTTA	58.344	36.000	0.00	0.00	0.00	2.24
1711	1721	5.506708	AGAAATTAACCCGCAATCCTACTT	58.493	37.500	0.00	0.00	0.00	2.24
1712	1722	5.112129	AGAAATTAACCCGCAATCCTACT	57.888	39.130	0.00	0.00	0.00	2.57
1713	1723	4.879545	TGAGAAATTAACCCGCAATCCTAC	59.120	41.667	0.00	0.00	0.00	3.18
1714	1724	5.104693	TCTGAGAAATTAACCCGCAATCCTA	60.105	40.000	0.00	0.00	0.00	2.94
1724	1734	4.462834	CCCCCTGTTTCTGAGAAATTAACC	59.537	45.833	11.20	0.00	0.00	2.85
1728	1738	3.767711	GTCCCCCTGTTTCTGAGAAATT	58.232	45.455	11.20	0.00	0.00	1.82
1730	1740	1.071699	CGTCCCCCTGTTTCTGAGAAA	59.928	52.381	3.02	3.02	0.00	2.52
1732	1742	0.471211	ACGTCCCCCTGTTTCTGAGA	60.471	55.000	0.00	0.00	0.00	3.27
1733	1743	0.396811	AACGTCCCCCTGTTTCTGAG	59.603	55.000	0.00	0.00	0.00	3.35
1734	1744	0.841289	AAACGTCCCCCTGTTTCTGA	59.159	50.000	0.00	0.00	33.19	3.27
1737	1747	1.537348	GCAAAAACGTCCCCCTGTTTC	60.537	52.381	0.00	0.00	37.31	2.78
1740	1750	0.684805	TTGCAAAAACGTCCCCCTGT	60.685	50.000	0.00	0.00	0.00	4.00
1743	1753	3.322369	CTTATTTGCAAAAACGTCCCCC	58.678	45.455	17.19	0.00	0.00	5.40
1744	1754	2.734606	GCTTATTTGCAAAAACGTCCCC	59.265	45.455	17.19	0.00	0.00	4.81
1745	1755	2.734606	GGCTTATTTGCAAAAACGTCCC	59.265	45.455	17.19	8.37	34.04	4.46
1748	1758	3.244111	CGTTGGCTTATTTGCAAAAACGT	59.756	39.130	25.35	11.10	39.07	3.99
1750	1760	4.605135	CGTCGTTGGCTTATTTGCAAAAAC	60.605	41.667	17.19	13.27	34.04	2.43
1761	1771	0.600782	GGTTGTCCGTCGTTGGCTTA	60.601	55.000	0.00	0.00	0.00	3.09
1763	1773	2.280592	GGTTGTCCGTCGTTGGCT	60.281	61.111	0.00	0.00	0.00	4.75
1767	1777	0.748450	TCTTCTGGTTGTCCGTCGTT	59.252	50.000	0.00	0.00	36.30	3.85
1768	1778	0.748450	TTCTTCTGGTTGTCCGTCGT	59.252	50.000	0.00	0.00	36.30	4.34
1774	1784	2.160417	CCAGCGATTTCTTCTGGTTGTC	59.840	50.000	0.00	0.00	41.76	3.18
1786	1796	5.233689	GCTAGTAATAACGAACCAGCGATTT	59.766	40.000	0.00	0.00	34.83	2.17
1791	1801	5.789710	TTTGCTAGTAATAACGAACCAGC	57.210	39.130	0.00	0.00	0.00	4.85
1798	1808	4.025979	CGGGCTCTTTTGCTAGTAATAACG	60.026	45.833	0.00	0.00	0.00	3.18
1799	1809	4.874396	ACGGGCTCTTTTGCTAGTAATAAC	59.126	41.667	0.00	0.00	0.00	1.89
1862	1872	3.565482	GCTCTTGAGTGATGGTTGTTGAA	59.435	43.478	0.00	0.00	0.00	2.69
1964	1974	1.961277	GTGTGAACACCGAGGCCAG	60.961	63.158	5.01	0.00	40.85	4.85
2013	2023	4.394729	AGAGAGAGACGCCTTAGGATTAG	58.605	47.826	0.69	0.00	0.00	1.73
2056	2070	2.412591	AGAGAGAGAGGGAGAGAGAGG	58.587	57.143	0.00	0.00	0.00	3.69
2210	2245	2.400158	TTTTTCATACCGGCGGCGG	61.400	57.895	44.20	44.20	0.00	6.13
2229	2264	4.882671	ATTCATAGCGCAAGATTCGTTT	57.117	36.364	11.47	0.00	43.02	3.60

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.