Multiple sequence alignment - TraesCS3D01G111200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G111200 chr3D 100.000 4518 0 0 1 4518 64650321 64645804 0.000000e+00 8344.0
1 TraesCS3D01G111200 chr3D 76.022 538 114 11 2594 3127 508203883 508203357 9.640000e-67 265.0
2 TraesCS3D01G111200 chr3A 94.886 1975 88 9 1733 3700 75413102 75411134 0.000000e+00 3075.0
3 TraesCS3D01G111200 chr3A 92.776 526 28 6 828 1347 75413947 75413426 0.000000e+00 752.0
4 TraesCS3D01G111200 chr3A 91.899 395 18 7 3743 4134 75411141 75410758 1.430000e-149 540.0
5 TraesCS3D01G111200 chr3A 95.041 121 5 1 4266 4386 75409872 75409753 5.970000e-44 189.0
6 TraesCS3D01G111200 chr3A 90.909 143 6 3 1487 1629 75413357 75413222 7.720000e-43 185.0
7 TraesCS3D01G111200 chr3A 84.211 171 19 6 274 437 75415183 75415014 4.680000e-35 159.0
8 TraesCS3D01G111200 chr3A 90.566 106 7 3 4370 4474 438489025 438489128 2.190000e-28 137.0
9 TraesCS3D01G111200 chr3A 96.154 78 3 0 1379 1456 75413433 75413356 1.320000e-25 128.0
10 TraesCS3D01G111200 chr3A 90.566 53 3 2 4468 4518 75409754 75409702 8.110000e-08 69.4
11 TraesCS3D01G111200 chr3B 96.076 1376 51 3 2181 3554 107670019 107668645 0.000000e+00 2239.0
12 TraesCS3D01G111200 chr3B 90.020 982 47 16 756 1734 107671613 107670680 0.000000e+00 1223.0
13 TraesCS3D01G111200 chr3B 92.678 478 28 4 1731 2205 107670584 107670111 0.000000e+00 682.0
14 TraesCS3D01G111200 chr3B 76.370 584 122 12 2569 3148 670533856 670533285 2.640000e-77 300.0
15 TraesCS3D01G111200 chr3B 92.308 195 8 6 3928 4121 107668145 107667957 2.070000e-68 270.0
16 TraesCS3D01G111200 chr3B 89.119 193 17 3 3553 3744 107668484 107668295 2.100000e-58 237.0
17 TraesCS3D01G111200 chr3B 94.262 122 6 1 4266 4386 107667067 107666946 7.720000e-43 185.0
18 TraesCS3D01G111200 chr3B 80.435 138 12 7 1 123 107771580 107771443 1.730000e-14 91.6
19 TraesCS3D01G111200 chr3B 94.118 51 1 2 4468 4518 107666947 107666899 4.850000e-10 76.8
20 TraesCS3D01G111200 chr1A 89.147 129 11 3 4145 4271 30457088 30456961 1.680000e-34 158.0
21 TraesCS3D01G111200 chr1B 94.624 93 5 0 4381 4473 661504156 661504248 1.310000e-30 145.0
22 TraesCS3D01G111200 chr7D 92.784 97 7 0 4385 4481 34845641 34845545 1.690000e-29 141.0
23 TraesCS3D01G111200 chr7B 92.079 101 7 1 4383 4482 167622321 167622221 1.690000e-29 141.0
24 TraesCS3D01G111200 chr7B 91.837 98 8 0 4385 4482 713378858 713378761 2.190000e-28 137.0
25 TraesCS3D01G111200 chr4A 93.684 95 5 1 4385 4478 8583066 8583160 1.690000e-29 141.0
26 TraesCS3D01G111200 chrUn 91.753 97 8 0 4385 4481 132121148 132121244 7.880000e-28 135.0
27 TraesCS3D01G111200 chr7A 90.385 104 8 2 4385 4488 14445658 14445557 7.880000e-28 135.0
28 TraesCS3D01G111200 chr7A 95.833 48 1 1 4147 4194 35891876 35891922 4.850000e-10 76.8
29 TraesCS3D01G111200 chr5D 91.000 100 9 0 4368 4467 524326377 524326476 7.880000e-28 135.0
30 TraesCS3D01G111200 chr1D 91.304 46 3 1 529 574 481717334 481717378 1.360000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G111200 chr3D 64645804 64650321 4517 True 8344.000000 8344 100.000000 1 4518 1 chr3D.!!$R1 4517
1 TraesCS3D01G111200 chr3D 508203357 508203883 526 True 265.000000 265 76.022000 2594 3127 1 chr3D.!!$R2 533
2 TraesCS3D01G111200 chr3A 75409702 75415183 5481 True 637.175000 3075 92.055250 274 4518 8 chr3A.!!$R1 4244
3 TraesCS3D01G111200 chr3B 107666899 107671613 4714 True 701.828571 2239 92.654429 756 4518 7 chr3B.!!$R3 3762
4 TraesCS3D01G111200 chr3B 670533285 670533856 571 True 300.000000 300 76.370000 2569 3148 1 chr3B.!!$R2 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 273 0.036732 TCATGTGGGAGACAAGGTGC 59.963 55.000 0.00 0.0 38.36 5.01 F
364 365 0.250295 CAGCCGTGAGTTTGGGAGAA 60.250 55.000 0.00 0.0 0.00 2.87 F
366 367 0.250338 GCCGTGAGTTTGGGAGAAGT 60.250 55.000 0.00 0.0 0.00 3.01 F
943 1712 1.127397 GCCTGCGGAGTTAAAACGTAC 59.873 52.381 2.36 0.0 0.00 3.67 F
2647 3649 0.863799 CAATGATGATGACCGAGCCG 59.136 55.000 0.00 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 2152 0.105039 GAGCCAACCTCCTACATCGG 59.895 60.000 0.00 0.00 34.35 4.18 R
2104 2983 2.532250 AAATGGGGTTGGATCCTCAC 57.468 50.000 14.23 9.62 41.11 3.51 R
2124 3003 3.703001 ACAGTGGGTCGAGATTGATTT 57.297 42.857 0.00 0.00 0.00 2.17 R
2838 3840 0.389948 ATGCTCCACGACGAAAGGAC 60.390 55.000 0.00 2.39 0.00 3.85 R
3917 5092 0.037590 AACCGTAAATCTGGCTGCCA 59.962 50.000 21.96 21.96 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.340439 TTTTGGTTTCGGTTGGTATTTGT 57.660 34.783 0.00 0.00 0.00 2.83
23 24 5.340439 TTTGGTTTCGGTTGGTATTTGTT 57.660 34.783 0.00 0.00 0.00 2.83
24 25 6.461110 TTTGGTTTCGGTTGGTATTTGTTA 57.539 33.333 0.00 0.00 0.00 2.41
25 26 5.692613 TGGTTTCGGTTGGTATTTGTTAG 57.307 39.130 0.00 0.00 0.00 2.34
26 27 4.519730 TGGTTTCGGTTGGTATTTGTTAGG 59.480 41.667 0.00 0.00 0.00 2.69
27 28 4.761227 GGTTTCGGTTGGTATTTGTTAGGA 59.239 41.667 0.00 0.00 0.00 2.94
28 29 5.241285 GGTTTCGGTTGGTATTTGTTAGGAA 59.759 40.000 0.00 0.00 0.00 3.36
29 30 6.238981 GGTTTCGGTTGGTATTTGTTAGGAAA 60.239 38.462 0.00 0.00 0.00 3.13
30 31 7.372714 GTTTCGGTTGGTATTTGTTAGGAAAT 58.627 34.615 0.00 0.00 0.00 2.17
31 32 7.527568 TTCGGTTGGTATTTGTTAGGAAATT 57.472 32.000 0.00 0.00 0.00 1.82
32 33 7.527568 TCGGTTGGTATTTGTTAGGAAATTT 57.472 32.000 0.00 0.00 0.00 1.82
33 34 7.953752 TCGGTTGGTATTTGTTAGGAAATTTT 58.046 30.769 0.00 0.00 0.00 1.82
34 35 8.422566 TCGGTTGGTATTTGTTAGGAAATTTTT 58.577 29.630 0.00 0.00 0.00 1.94
35 36 9.694137 CGGTTGGTATTTGTTAGGAAATTTTTA 57.306 29.630 0.00 0.00 0.00 1.52
135 136 7.471657 AATTTTAAACAGTGTTTTTAGCGGG 57.528 32.000 25.35 0.00 0.00 6.13
136 137 4.571372 TTAAACAGTGTTTTTAGCGGGG 57.429 40.909 25.35 0.00 0.00 5.73
137 138 2.061509 AACAGTGTTTTTAGCGGGGT 57.938 45.000 1.64 0.00 0.00 4.95
138 139 2.934886 ACAGTGTTTTTAGCGGGGTA 57.065 45.000 0.00 0.00 0.00 3.69
139 140 3.211718 ACAGTGTTTTTAGCGGGGTAA 57.788 42.857 0.00 0.00 0.00 2.85
140 141 3.553904 ACAGTGTTTTTAGCGGGGTAAA 58.446 40.909 0.00 0.00 0.00 2.01
141 142 4.146564 ACAGTGTTTTTAGCGGGGTAAAT 58.853 39.130 4.14 0.00 0.00 1.40
142 143 4.585581 ACAGTGTTTTTAGCGGGGTAAATT 59.414 37.500 4.14 0.00 0.00 1.82
143 144 5.069383 ACAGTGTTTTTAGCGGGGTAAATTT 59.931 36.000 4.14 0.00 0.00 1.82
144 145 5.986741 CAGTGTTTTTAGCGGGGTAAATTTT 59.013 36.000 0.00 0.00 0.00 1.82
145 146 7.146648 CAGTGTTTTTAGCGGGGTAAATTTTA 58.853 34.615 0.00 0.00 0.00 1.52
146 147 7.652507 CAGTGTTTTTAGCGGGGTAAATTTTAA 59.347 33.333 0.00 0.00 0.00 1.52
147 148 8.202811 AGTGTTTTTAGCGGGGTAAATTTTAAA 58.797 29.630 0.00 0.00 0.00 1.52
148 149 8.274939 GTGTTTTTAGCGGGGTAAATTTTAAAC 58.725 33.333 0.00 6.09 0.00 2.01
149 150 7.983484 TGTTTTTAGCGGGGTAAATTTTAAACA 59.017 29.630 0.00 10.87 0.00 2.83
150 151 8.489559 GTTTTTAGCGGGGTAAATTTTAAACAG 58.510 33.333 0.00 0.00 0.00 3.16
151 152 6.897706 TTAGCGGGGTAAATTTTAAACAGT 57.102 33.333 0.00 0.00 0.00 3.55
152 153 5.128992 AGCGGGGTAAATTTTAAACAGTG 57.871 39.130 0.00 0.00 0.00 3.66
153 154 4.585581 AGCGGGGTAAATTTTAAACAGTGT 59.414 37.500 0.00 0.00 0.00 3.55
154 155 5.069383 AGCGGGGTAAATTTTAAACAGTGTT 59.931 36.000 1.64 1.64 0.00 3.32
155 156 6.264970 AGCGGGGTAAATTTTAAACAGTGTTA 59.735 34.615 9.37 0.00 0.00 2.41
156 157 6.922407 GCGGGGTAAATTTTAAACAGTGTTAA 59.078 34.615 9.37 0.10 0.00 2.01
157 158 7.437565 GCGGGGTAAATTTTAAACAGTGTTAAA 59.562 33.333 9.37 7.65 32.45 1.52
158 159 9.478768 CGGGGTAAATTTTAAACAGTGTTAAAT 57.521 29.630 9.37 9.68 33.96 1.40
202 203 8.075574 TGAATTTATGATGTCATTGATTACGGC 58.924 33.333 0.19 0.00 37.76 5.68
203 204 7.750229 ATTTATGATGTCATTGATTACGGCT 57.250 32.000 0.19 0.00 37.76 5.52
204 205 6.785488 TTATGATGTCATTGATTACGGCTC 57.215 37.500 0.19 0.00 37.76 4.70
205 206 4.135747 TGATGTCATTGATTACGGCTCA 57.864 40.909 0.00 0.00 0.00 4.26
206 207 4.707105 TGATGTCATTGATTACGGCTCAT 58.293 39.130 0.00 0.00 0.00 2.90
207 208 4.512571 TGATGTCATTGATTACGGCTCATG 59.487 41.667 0.00 0.00 0.00 3.07
208 209 2.613595 TGTCATTGATTACGGCTCATGC 59.386 45.455 0.00 0.00 38.76 4.06
209 210 1.866601 TCATTGATTACGGCTCATGCG 59.133 47.619 0.00 0.00 40.82 4.73
210 211 0.588252 ATTGATTACGGCTCATGCGC 59.412 50.000 0.00 0.00 40.82 6.09
211 212 0.742635 TTGATTACGGCTCATGCGCA 60.743 50.000 14.96 14.96 40.82 6.09
212 213 0.532640 TGATTACGGCTCATGCGCAT 60.533 50.000 19.28 19.28 40.82 4.73
213 214 0.110509 GATTACGGCTCATGCGCATG 60.111 55.000 38.48 38.48 40.82 4.06
214 215 2.121564 ATTACGGCTCATGCGCATGC 62.122 55.000 39.11 30.01 40.82 4.06
225 226 2.502510 CGCATGCGCTGTTGTTCC 60.503 61.111 29.09 0.00 35.30 3.62
226 227 2.126346 GCATGCGCTGTTGTTCCC 60.126 61.111 9.73 0.00 34.30 3.97
227 228 2.629656 GCATGCGCTGTTGTTCCCT 61.630 57.895 9.73 0.00 34.30 4.20
228 229 1.959085 CATGCGCTGTTGTTCCCTT 59.041 52.632 9.73 0.00 0.00 3.95
229 230 0.387622 CATGCGCTGTTGTTCCCTTG 60.388 55.000 9.73 0.00 0.00 3.61
230 231 1.526575 ATGCGCTGTTGTTCCCTTGG 61.527 55.000 9.73 0.00 0.00 3.61
231 232 2.193536 GCGCTGTTGTTCCCTTGGT 61.194 57.895 0.00 0.00 0.00 3.67
232 233 1.734388 GCGCTGTTGTTCCCTTGGTT 61.734 55.000 0.00 0.00 0.00 3.67
233 234 0.310854 CGCTGTTGTTCCCTTGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
234 235 0.310854 GCTGTTGTTCCCTTGGTTCG 59.689 55.000 0.00 0.00 0.00 3.95
235 236 0.951558 CTGTTGTTCCCTTGGTTCGG 59.048 55.000 0.00 0.00 0.00 4.30
236 237 1.104577 TGTTGTTCCCTTGGTTCGGC 61.105 55.000 0.00 0.00 0.00 5.54
237 238 0.822121 GTTGTTCCCTTGGTTCGGCT 60.822 55.000 0.00 0.00 0.00 5.52
238 239 0.821711 TTGTTCCCTTGGTTCGGCTG 60.822 55.000 0.00 0.00 0.00 4.85
239 240 1.971695 GTTCCCTTGGTTCGGCTGG 60.972 63.158 0.00 0.00 0.00 4.85
240 241 3.860930 TTCCCTTGGTTCGGCTGGC 62.861 63.158 0.00 0.00 0.00 4.85
241 242 4.351054 CCCTTGGTTCGGCTGGCT 62.351 66.667 0.00 0.00 0.00 4.75
242 243 2.747855 CCTTGGTTCGGCTGGCTC 60.748 66.667 0.00 0.00 0.00 4.70
243 244 2.032528 CTTGGTTCGGCTGGCTCA 59.967 61.111 0.00 0.00 0.00 4.26
244 245 1.377725 CTTGGTTCGGCTGGCTCAT 60.378 57.895 0.00 0.00 0.00 2.90
245 246 1.651240 CTTGGTTCGGCTGGCTCATG 61.651 60.000 0.00 0.00 0.00 3.07
246 247 2.045926 GGTTCGGCTGGCTCATGT 60.046 61.111 0.00 0.00 0.00 3.21
247 248 2.109126 GGTTCGGCTGGCTCATGTC 61.109 63.158 0.00 0.00 0.00 3.06
248 249 2.125552 TTCGGCTGGCTCATGTCG 60.126 61.111 0.00 0.00 0.00 4.35
249 250 4.819761 TCGGCTGGCTCATGTCGC 62.820 66.667 0.00 0.00 0.00 5.19
250 251 4.827087 CGGCTGGCTCATGTCGCT 62.827 66.667 0.00 0.00 0.00 4.93
251 252 2.894387 GGCTGGCTCATGTCGCTC 60.894 66.667 9.05 2.10 0.00 5.03
252 253 3.260483 GCTGGCTCATGTCGCTCG 61.260 66.667 9.05 3.36 0.00 5.03
253 254 2.182791 CTGGCTCATGTCGCTCGT 59.817 61.111 9.05 0.00 0.00 4.18
254 255 1.875813 CTGGCTCATGTCGCTCGTC 60.876 63.158 9.05 0.00 0.00 4.20
255 256 2.181777 GGCTCATGTCGCTCGTCA 59.818 61.111 9.05 0.00 0.00 4.35
256 257 1.227089 GGCTCATGTCGCTCGTCAT 60.227 57.895 9.05 0.00 0.00 3.06
257 258 1.485838 GGCTCATGTCGCTCGTCATG 61.486 60.000 18.48 18.48 40.94 3.07
258 259 0.803768 GCTCATGTCGCTCGTCATGT 60.804 55.000 21.74 0.00 40.62 3.21
259 260 0.919300 CTCATGTCGCTCGTCATGTG 59.081 55.000 21.74 17.66 40.62 3.21
260 261 0.458370 TCATGTCGCTCGTCATGTGG 60.458 55.000 21.74 4.84 40.62 4.17
261 262 1.153568 ATGTCGCTCGTCATGTGGG 60.154 57.895 1.60 0.00 0.00 4.61
262 263 1.604147 ATGTCGCTCGTCATGTGGGA 61.604 55.000 1.60 0.00 0.00 4.37
263 264 1.517257 GTCGCTCGTCATGTGGGAG 60.517 63.158 0.00 0.00 34.26 4.30
264 265 1.677633 TCGCTCGTCATGTGGGAGA 60.678 57.895 12.42 3.06 0.00 3.71
265 266 1.517257 CGCTCGTCATGTGGGAGAC 60.517 63.158 12.42 0.00 0.00 3.36
266 267 1.591703 GCTCGTCATGTGGGAGACA 59.408 57.895 12.42 0.00 39.53 3.41
267 268 0.037326 GCTCGTCATGTGGGAGACAA 60.037 55.000 12.42 0.00 38.36 3.18
268 269 2.001812 CTCGTCATGTGGGAGACAAG 57.998 55.000 0.00 0.00 38.36 3.16
269 270 0.608130 TCGTCATGTGGGAGACAAGG 59.392 55.000 0.00 0.00 38.36 3.61
270 271 0.321671 CGTCATGTGGGAGACAAGGT 59.678 55.000 0.00 0.00 38.36 3.50
271 272 1.813513 GTCATGTGGGAGACAAGGTG 58.186 55.000 0.00 0.00 38.36 4.00
272 273 0.036732 TCATGTGGGAGACAAGGTGC 59.963 55.000 0.00 0.00 38.36 5.01
295 296 4.684134 TTGGAGCAAGCCCTGGCC 62.684 66.667 4.13 0.00 43.17 5.36
312 313 1.237285 GCCCGCATCGGCTCATAAAT 61.237 55.000 0.00 0.00 46.86 1.40
360 361 1.003839 TAGCAGCCGTGAGTTTGGG 60.004 57.895 0.00 0.00 0.00 4.12
361 362 1.476845 TAGCAGCCGTGAGTTTGGGA 61.477 55.000 0.00 0.00 0.00 4.37
362 363 2.328099 GCAGCCGTGAGTTTGGGAG 61.328 63.158 0.00 0.00 0.00 4.30
363 364 1.371183 CAGCCGTGAGTTTGGGAGA 59.629 57.895 0.00 0.00 0.00 3.71
364 365 0.250295 CAGCCGTGAGTTTGGGAGAA 60.250 55.000 0.00 0.00 0.00 2.87
366 367 0.250338 GCCGTGAGTTTGGGAGAAGT 60.250 55.000 0.00 0.00 0.00 3.01
367 368 1.814248 GCCGTGAGTTTGGGAGAAGTT 60.814 52.381 0.00 0.00 0.00 2.66
368 369 2.549349 GCCGTGAGTTTGGGAGAAGTTA 60.549 50.000 0.00 0.00 0.00 2.24
378 382 8.818622 AGTTTGGGAGAAGTTAGTTAGTTTTT 57.181 30.769 0.00 0.00 0.00 1.94
381 385 6.819284 TGGGAGAAGTTAGTTAGTTTTTCGA 58.181 36.000 0.00 0.00 0.00 3.71
384 388 8.281194 GGGAGAAGTTAGTTAGTTTTTCGAAAG 58.719 37.037 10.98 0.00 0.00 2.62
460 1224 9.244799 ACCTCAATTTCGAGAAATTTTTAACAC 57.755 29.630 18.03 0.00 45.67 3.32
461 1225 9.243637 CCTCAATTTCGAGAAATTTTTAACACA 57.756 29.630 18.03 0.00 45.67 3.72
544 1308 9.463443 GTGCAAAGAGTATAGAAAAATGTTTGT 57.537 29.630 0.00 0.00 0.00 2.83
545 1309 9.462174 TGCAAAGAGTATAGAAAAATGTTTGTG 57.538 29.630 0.00 0.00 0.00 3.33
546 1310 9.677567 GCAAAGAGTATAGAAAAATGTTTGTGA 57.322 29.630 0.00 0.00 0.00 3.58
795 1562 2.533266 AAGAGCACAAAAGAGAGCGA 57.467 45.000 0.00 0.00 0.00 4.93
813 1580 3.114065 GCGATCTCTAGGGTTTTGTACG 58.886 50.000 0.00 0.00 0.00 3.67
824 1591 3.380954 GGGTTTTGTACGTGGAGGAAAAA 59.619 43.478 0.00 0.00 0.00 1.94
869 1637 4.101898 ACCCTAACCAAACAAATCCAAACC 59.898 41.667 0.00 0.00 0.00 3.27
880 1649 2.805290 ATCCAAACCAGGGGGAAAAA 57.195 45.000 1.24 0.00 38.05 1.94
934 1703 3.665675 GATCGGTGCCTGCGGAGTT 62.666 63.158 2.36 0.00 0.00 3.01
943 1712 1.127397 GCCTGCGGAGTTAAAACGTAC 59.873 52.381 2.36 0.00 0.00 3.67
957 1726 9.837525 AGTTAAAACGTACTACTAGAATGACTG 57.162 33.333 0.00 0.00 0.00 3.51
988 1761 4.630069 GGACAATCCGATCGAAGAAAAGAA 59.370 41.667 18.66 0.00 43.58 2.52
996 1769 4.390297 CGATCGAAGAAAAGAAAAGAGGCT 59.610 41.667 10.26 0.00 43.58 4.58
1005 1778 1.283321 AGAAAAGAGGCTGGGATGGAC 59.717 52.381 0.00 0.00 0.00 4.02
1101 1874 5.719173 ACCGAAGAGAAGAGAAGAAAGATG 58.281 41.667 0.00 0.00 0.00 2.90
1158 1931 3.385384 CCGCAGAGGAGAGTGCCA 61.385 66.667 0.00 0.00 45.00 4.92
1343 2116 4.980339 TGATTGCTGAATGGCTCCTATA 57.020 40.909 0.00 0.00 0.00 1.31
1348 2121 3.244665 TGCTGAATGGCTCCTATATGTGG 60.245 47.826 0.00 0.00 0.00 4.17
1349 2122 3.244700 GCTGAATGGCTCCTATATGTGGT 60.245 47.826 0.00 0.00 0.00 4.16
1465 2238 1.344438 TCACTTCATGACTGCGACCTT 59.656 47.619 0.00 0.00 29.99 3.50
1525 2298 5.590530 ACAACCAGCAACAACTCAAATAA 57.409 34.783 0.00 0.00 0.00 1.40
1526 2299 6.160576 ACAACCAGCAACAACTCAAATAAT 57.839 33.333 0.00 0.00 0.00 1.28
1527 2300 7.283625 ACAACCAGCAACAACTCAAATAATA 57.716 32.000 0.00 0.00 0.00 0.98
1553 2326 7.639113 TTGTTTCAGTAAAAACCAGAGACAT 57.361 32.000 0.00 0.00 38.16 3.06
1569 2342 5.048224 CAGAGACATCAACCTCTGCATTTTT 60.048 40.000 0.00 0.00 46.48 1.94
1793 2670 7.620094 ACTCTCTATATACTTGGTCACTTGGTT 59.380 37.037 0.00 0.00 0.00 3.67
1807 2684 6.072673 GGTCACTTGGTTAAACACAGATAAGG 60.073 42.308 0.00 0.00 0.00 2.69
2002 2881 8.629158 AGCATTTGTAATCACTTGTTTCTGTTA 58.371 29.630 0.00 0.00 0.00 2.41
2003 2882 9.410556 GCATTTGTAATCACTTGTTTCTGTTAT 57.589 29.630 0.00 0.00 0.00 1.89
2027 2906 6.627395 TTATAGACCATTTAAACGCATGGG 57.373 37.500 8.44 8.44 43.94 4.00
2042 2921 1.679680 CATGGGTCCTCATGATTGCAC 59.320 52.381 12.60 0.00 45.30 4.57
2104 2983 6.973843 TCAAGATTGTCTTTTTGGATGAGTG 58.026 36.000 0.00 0.00 33.78 3.51
2105 2984 6.547141 TCAAGATTGTCTTTTTGGATGAGTGT 59.453 34.615 0.00 0.00 33.78 3.55
2124 3003 2.922955 TGTGAGGATCCAACCCCATTTA 59.077 45.455 15.82 0.00 0.00 1.40
2159 3041 6.020201 CGACCCACTGTTTTCAAATTTTGTAC 60.020 38.462 8.89 6.86 0.00 2.90
2162 3044 6.816140 CCCACTGTTTTCAAATTTTGTACTGT 59.184 34.615 8.89 11.55 0.00 3.55
2183 3065 4.101430 TGTTTACCCTAAAGAGACCACGTT 59.899 41.667 0.00 0.00 0.00 3.99
2288 3285 6.957984 TCGAACTTTCTCATTCTCATGAAG 57.042 37.500 0.00 0.00 39.04 3.02
2458 3460 8.841444 ATTGCGTTGATAATTTGTAAGCTTAG 57.159 30.769 6.38 0.00 0.00 2.18
2527 3529 6.575056 GCATCAATCTATGTATCCTGCCACTA 60.575 42.308 0.00 0.00 0.00 2.74
2647 3649 0.863799 CAATGATGATGACCGAGCCG 59.136 55.000 0.00 0.00 0.00 5.52
2838 3840 0.893270 TTCAACCGCACAAGGGATGG 60.893 55.000 0.00 0.00 35.02 3.51
2869 3871 0.179048 TGGAGCATGACGGCCTTATG 60.179 55.000 0.00 3.69 0.00 1.90
2940 3942 3.303881 TGAGTTCGACATGAAGGTCAG 57.696 47.619 0.00 0.00 37.23 3.51
2948 3950 3.037549 GACATGAAGGTCAGGAGAGGAT 58.962 50.000 0.00 0.00 37.73 3.24
2992 3994 1.465777 CAGCTCATCGATTGTGTTGCA 59.534 47.619 0.00 0.00 0.00 4.08
3022 4024 2.474816 GACATAACCTCGAGACATGCC 58.525 52.381 15.71 2.84 0.00 4.40
3033 4035 2.143122 GAGACATGCCACGAAGAACAA 58.857 47.619 0.00 0.00 0.00 2.83
3083 4085 4.442332 CGGTGGACATAACCTATGCACTTA 60.442 45.833 0.00 0.00 39.79 2.24
3283 4285 0.390472 CGAAGGGAGGTCAGTTGCTC 60.390 60.000 0.00 0.00 0.00 4.26
3443 4445 0.323629 GTCGACTTTGGACATCCCCA 59.676 55.000 8.70 0.00 34.56 4.96
3444 4446 1.065418 GTCGACTTTGGACATCCCCAT 60.065 52.381 8.70 0.00 35.87 4.00
3471 4473 1.347062 TTGGGTCCAAATTGCTTCCC 58.653 50.000 0.00 10.00 32.44 3.97
3547 4549 2.172483 CTCTTGGTGGGGTGTCCTCG 62.172 65.000 0.00 0.00 36.20 4.63
3593 4757 5.118990 AGGATGTTTGTTATCTGGATGTCG 58.881 41.667 0.00 0.00 0.00 4.35
3635 4799 1.931172 GTGTATGTGAAATAGCCGCGT 59.069 47.619 4.92 0.00 0.00 6.01
3641 4805 2.806818 TGTGAAATAGCCGCGTTTTGTA 59.193 40.909 4.92 0.00 0.00 2.41
3643 4807 2.417239 TGAAATAGCCGCGTTTTGTAGG 59.583 45.455 4.92 0.00 0.00 3.18
3685 4849 7.801752 TCAAGTTTGTTTGTGTTTGATTTTCC 58.198 30.769 0.00 0.00 0.00 3.13
3708 4872 2.902584 GCATGTTTGGATGCCCCC 59.097 61.111 0.00 0.00 42.57 5.40
3725 4889 2.375509 CCCCCTGTGGTTTCTTTAGACT 59.624 50.000 0.00 0.00 0.00 3.24
3733 4897 6.826668 TGTGGTTTCTTTAGACTGATTCTCA 58.173 36.000 0.00 0.00 35.55 3.27
3736 4900 7.604164 GTGGTTTCTTTAGACTGATTCTCATCA 59.396 37.037 0.00 0.00 37.05 3.07
3754 4924 9.942850 TTCTCATCACAAGAAAGTATTGTCATA 57.057 29.630 0.00 0.00 38.80 2.15
3766 4936 9.614792 GAAAGTATTGTCATAATACTTGGGACT 57.385 33.333 17.54 4.56 46.77 3.85
3775 4949 7.278868 GTCATAATACTTGGGACTTTCAGACTG 59.721 40.741 0.00 0.00 0.00 3.51
3805 4979 6.901081 AGCAAATATAATTCCCCTGTAAGC 57.099 37.500 0.00 0.00 0.00 3.09
3810 4984 2.143876 AATTCCCCTGTAAGCGCATT 57.856 45.000 11.47 3.50 0.00 3.56
3879 5054 4.458295 CACTCTGTCCTGATGCAATTCTTT 59.542 41.667 0.00 0.00 0.00 2.52
3880 5055 4.458295 ACTCTGTCCTGATGCAATTCTTTG 59.542 41.667 0.00 0.00 35.85 2.77
3917 5092 0.890996 GTTGGCTTGCCACTAGCTGT 60.891 55.000 14.52 0.00 44.23 4.40
3933 5108 0.729116 CTGTGGCAGCCAGATTTACG 59.271 55.000 16.83 0.00 32.34 3.18
4000 5175 3.797507 CTTGCTGGTGCCTGGTGGT 62.798 63.158 0.00 0.00 38.71 4.16
4043 5218 6.201425 TGAGTAAATTGTACAGAACGACAACC 59.799 38.462 0.00 0.00 38.33 3.77
4085 5260 1.074405 ACCATGACTTGTGTGGATGCT 59.926 47.619 0.00 0.00 36.82 3.79
4103 5278 2.793790 TGCTAATTTGCACAAAACAGCG 59.206 40.909 10.62 3.77 40.79 5.18
4131 5306 4.960938 TGTGCTGAAGTCAAGTCACTAAT 58.039 39.130 8.50 0.00 0.00 1.73
4134 5309 5.237344 GTGCTGAAGTCAAGTCACTAATTGT 59.763 40.000 0.00 0.00 0.00 2.71
4139 5314 2.159627 GTCAAGTCACTAATTGTGCGGG 59.840 50.000 0.00 0.00 45.81 6.13
4140 5315 1.468520 CAAGTCACTAATTGTGCGGGG 59.531 52.381 0.00 0.00 45.81 5.73
4141 5316 0.035439 AGTCACTAATTGTGCGGGGG 60.035 55.000 0.00 0.00 45.81 5.40
4142 5317 0.322187 GTCACTAATTGTGCGGGGGT 60.322 55.000 0.00 0.00 45.81 4.95
4144 5319 1.202952 TCACTAATTGTGCGGGGGTTT 60.203 47.619 0.00 0.00 45.81 3.27
4145 5320 1.616374 CACTAATTGTGCGGGGGTTTT 59.384 47.619 0.00 0.00 40.06 2.43
4146 5321 2.036604 CACTAATTGTGCGGGGGTTTTT 59.963 45.455 0.00 0.00 40.06 1.94
4168 5343 2.962786 TTGACGCGTCAACGGTGG 60.963 61.111 42.01 0.00 43.90 4.61
4169 5344 4.953868 TGACGCGTCAACGGTGGG 62.954 66.667 37.68 0.00 40.23 4.61
4173 5348 2.357760 GCGTCAACGGTGGGCTTA 60.358 61.111 0.00 0.00 40.23 3.09
4174 5349 2.674084 GCGTCAACGGTGGGCTTAC 61.674 63.158 0.00 0.00 40.23 2.34
4176 5351 2.357760 TCAACGGTGGGCTTACGC 60.358 61.111 0.00 0.00 0.00 4.42
4189 5364 2.696506 GCTTACGCCTACCTGAACTTT 58.303 47.619 0.00 0.00 0.00 2.66
4190 5365 3.072211 GCTTACGCCTACCTGAACTTTT 58.928 45.455 0.00 0.00 0.00 2.27
4192 5367 4.874396 GCTTACGCCTACCTGAACTTTTAT 59.126 41.667 0.00 0.00 0.00 1.40
4193 5368 5.353400 GCTTACGCCTACCTGAACTTTTATT 59.647 40.000 0.00 0.00 0.00 1.40
4194 5369 6.536224 GCTTACGCCTACCTGAACTTTTATTA 59.464 38.462 0.00 0.00 0.00 0.98
4195 5370 7.465111 GCTTACGCCTACCTGAACTTTTATTAC 60.465 40.741 0.00 0.00 0.00 1.89
4196 5371 5.181009 ACGCCTACCTGAACTTTTATTACC 58.819 41.667 0.00 0.00 0.00 2.85
4197 5372 5.180271 CGCCTACCTGAACTTTTATTACCA 58.820 41.667 0.00 0.00 0.00 3.25
4198 5373 5.644636 CGCCTACCTGAACTTTTATTACCAA 59.355 40.000 0.00 0.00 0.00 3.67
4199 5374 6.317893 CGCCTACCTGAACTTTTATTACCAAT 59.682 38.462 0.00 0.00 0.00 3.16
4202 5377 9.238368 CCTACCTGAACTTTTATTACCAATTGA 57.762 33.333 7.12 0.00 0.00 2.57
4205 5380 7.947890 ACCTGAACTTTTATTACCAATTGAGGA 59.052 33.333 7.12 0.00 0.00 3.71
4206 5381 8.462016 CCTGAACTTTTATTACCAATTGAGGAG 58.538 37.037 7.12 0.00 0.00 3.69
4208 5383 6.436843 ACTTTTATTACCAATTGAGGAGCG 57.563 37.500 7.12 0.00 0.00 5.03
4210 5385 4.497291 TTATTACCAATTGAGGAGCGGT 57.503 40.909 7.12 0.00 0.00 5.68
4212 5387 3.985019 TTACCAATTGAGGAGCGGTTA 57.015 42.857 7.12 0.00 0.00 2.85
4213 5388 2.109425 ACCAATTGAGGAGCGGTTAC 57.891 50.000 7.12 0.00 0.00 2.50
4214 5389 1.349688 ACCAATTGAGGAGCGGTTACA 59.650 47.619 7.12 0.00 0.00 2.41
4223 5936 1.471676 GGAGCGGTTACATGAGGACAG 60.472 57.143 0.00 0.00 0.00 3.51
4225 5938 1.478510 AGCGGTTACATGAGGACAGAG 59.521 52.381 0.00 0.00 0.00 3.35
4228 5941 3.119245 GCGGTTACATGAGGACAGAGTTA 60.119 47.826 0.00 0.00 0.00 2.24
4231 5944 5.394224 CGGTTACATGAGGACAGAGTTACAT 60.394 44.000 0.00 0.00 0.00 2.29
4235 5948 6.166984 ACATGAGGACAGAGTTACATATGG 57.833 41.667 7.80 0.00 0.00 2.74
4237 5950 3.967326 TGAGGACAGAGTTACATATGGGG 59.033 47.826 7.80 0.00 0.00 4.96
4238 5951 3.318313 AGGACAGAGTTACATATGGGGG 58.682 50.000 7.80 0.00 0.00 5.40
4255 5968 2.395619 GGGGGAGGAGAGACGAAATTA 58.604 52.381 0.00 0.00 0.00 1.40
4256 5969 2.102757 GGGGGAGGAGAGACGAAATTAC 59.897 54.545 0.00 0.00 0.00 1.89
4258 5971 3.197116 GGGGAGGAGAGACGAAATTACAA 59.803 47.826 0.00 0.00 0.00 2.41
4260 5973 3.866327 GGAGGAGAGACGAAATTACAAGC 59.134 47.826 0.00 0.00 0.00 4.01
4261 5974 4.495422 GAGGAGAGACGAAATTACAAGCA 58.505 43.478 0.00 0.00 0.00 3.91
4262 5975 4.894784 AGGAGAGACGAAATTACAAGCAA 58.105 39.130 0.00 0.00 0.00 3.91
4263 5976 5.305585 AGGAGAGACGAAATTACAAGCAAA 58.694 37.500 0.00 0.00 0.00 3.68
4353 6290 5.179555 AGACGAATACAGAAAAAGGAACAGC 59.820 40.000 0.00 0.00 0.00 4.40
4360 6297 5.793817 ACAGAAAAAGGAACAGCAAAACTT 58.206 33.333 0.00 0.00 0.00 2.66
4384 6322 6.502138 TCAAAATCTCCATCCCTTGGTAATT 58.498 36.000 0.00 0.00 46.52 1.40
4385 6323 7.647827 TCAAAATCTCCATCCCTTGGTAATTA 58.352 34.615 0.00 0.00 46.52 1.40
4386 6324 7.559897 TCAAAATCTCCATCCCTTGGTAATTAC 59.440 37.037 7.09 7.09 46.52 1.89
4387 6325 6.848562 AATCTCCATCCCTTGGTAATTACT 57.151 37.500 15.05 0.00 46.52 2.24
4388 6326 5.888982 TCTCCATCCCTTGGTAATTACTC 57.111 43.478 15.05 6.39 46.52 2.59
4389 6327 4.658901 TCTCCATCCCTTGGTAATTACTCC 59.341 45.833 15.05 0.45 46.52 3.85
4390 6328 3.720002 TCCATCCCTTGGTAATTACTCCC 59.280 47.826 15.05 0.00 46.52 4.30
4391 6329 3.722101 CCATCCCTTGGTAATTACTCCCT 59.278 47.826 15.05 0.00 40.99 4.20
4392 6330 4.168088 CCATCCCTTGGTAATTACTCCCTT 59.832 45.833 15.05 0.00 40.99 3.95
4393 6331 5.377478 CATCCCTTGGTAATTACTCCCTTC 58.623 45.833 15.05 0.00 0.00 3.46
4394 6332 3.453353 TCCCTTGGTAATTACTCCCTTCG 59.547 47.826 15.05 0.00 0.00 3.79
4395 6333 3.199289 CCCTTGGTAATTACTCCCTTCGT 59.801 47.826 15.05 0.00 0.00 3.85
4396 6334 4.406649 CCCTTGGTAATTACTCCCTTCGTA 59.593 45.833 15.05 0.00 0.00 3.43
4397 6335 5.104817 CCCTTGGTAATTACTCCCTTCGTAA 60.105 44.000 15.05 0.00 0.00 3.18
4398 6336 6.408869 CCTTGGTAATTACTCCCTTCGTAAA 58.591 40.000 15.05 0.00 31.36 2.01
4399 6337 6.314648 CCTTGGTAATTACTCCCTTCGTAAAC 59.685 42.308 15.05 0.00 31.36 2.01
4400 6338 6.610075 TGGTAATTACTCCCTTCGTAAACT 57.390 37.500 15.05 0.00 31.36 2.66
4401 6339 7.716799 TGGTAATTACTCCCTTCGTAAACTA 57.283 36.000 15.05 0.00 31.36 2.24
4402 6340 8.133024 TGGTAATTACTCCCTTCGTAAACTAA 57.867 34.615 15.05 0.00 31.36 2.24
4403 6341 8.761689 TGGTAATTACTCCCTTCGTAAACTAAT 58.238 33.333 15.05 0.00 31.36 1.73
4411 6349 8.358895 ACTCCCTTCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
4412 6350 7.365741 TCCCTTCGTAAACTAATATAAGAGCG 58.634 38.462 0.00 0.00 0.00 5.03
4413 6351 7.013655 TCCCTTCGTAAACTAATATAAGAGCGT 59.986 37.037 0.00 0.00 0.00 5.07
4414 6352 7.650903 CCCTTCGTAAACTAATATAAGAGCGTT 59.349 37.037 0.00 0.00 0.00 4.84
4415 6353 9.028185 CCTTCGTAAACTAATATAAGAGCGTTT 57.972 33.333 0.00 0.00 0.00 3.60
4463 6401 7.229581 AGGCTCTTATATTAGTTTACGGAGG 57.770 40.000 0.00 0.00 0.00 4.30
4464 6402 6.210984 AGGCTCTTATATTAGTTTACGGAGGG 59.789 42.308 0.00 0.00 0.00 4.30
4465 6403 6.210185 GGCTCTTATATTAGTTTACGGAGGGA 59.790 42.308 0.00 0.00 0.00 4.20
4466 6404 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
4500 6438 3.603158 ACCAACAACCCAGTTTCAAAC 57.397 42.857 0.00 0.00 0.00 2.93
4509 6447 4.490743 ACCCAGTTTCAAACAAAAAGTCG 58.509 39.130 2.41 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.340439 ACAAATACCAACCGAAACCAAAA 57.660 34.783 0.00 0.00 0.00 2.44
1 2 5.340439 AACAAATACCAACCGAAACCAAA 57.660 34.783 0.00 0.00 0.00 3.28
2 3 5.009811 CCTAACAAATACCAACCGAAACCAA 59.990 40.000 0.00 0.00 0.00 3.67
3 4 4.519730 CCTAACAAATACCAACCGAAACCA 59.480 41.667 0.00 0.00 0.00 3.67
4 5 4.761227 TCCTAACAAATACCAACCGAAACC 59.239 41.667 0.00 0.00 0.00 3.27
5 6 5.945466 TCCTAACAAATACCAACCGAAAC 57.055 39.130 0.00 0.00 0.00 2.78
6 7 6.956202 TTTCCTAACAAATACCAACCGAAA 57.044 33.333 0.00 0.00 0.00 3.46
7 8 7.527568 AATTTCCTAACAAATACCAACCGAA 57.472 32.000 0.00 0.00 0.00 4.30
8 9 7.527568 AAATTTCCTAACAAATACCAACCGA 57.472 32.000 0.00 0.00 0.00 4.69
9 10 8.596271 AAAAATTTCCTAACAAATACCAACCG 57.404 30.769 0.00 0.00 0.00 4.44
109 110 9.032420 CCCGCTAAAAACACTGTTTAAAATTTA 57.968 29.630 7.59 2.42 0.00 1.40
110 111 7.011576 CCCCGCTAAAAACACTGTTTAAAATTT 59.988 33.333 7.59 1.39 0.00 1.82
111 112 6.480651 CCCCGCTAAAAACACTGTTTAAAATT 59.519 34.615 7.59 1.73 0.00 1.82
112 113 5.986741 CCCCGCTAAAAACACTGTTTAAAAT 59.013 36.000 7.59 0.00 0.00 1.82
113 114 5.105432 ACCCCGCTAAAAACACTGTTTAAAA 60.105 36.000 7.59 0.00 0.00 1.52
114 115 4.401837 ACCCCGCTAAAAACACTGTTTAAA 59.598 37.500 7.59 0.00 0.00 1.52
115 116 3.952967 ACCCCGCTAAAAACACTGTTTAA 59.047 39.130 7.59 0.00 0.00 1.52
116 117 3.553904 ACCCCGCTAAAAACACTGTTTA 58.446 40.909 7.59 0.00 0.00 2.01
117 118 2.380941 ACCCCGCTAAAAACACTGTTT 58.619 42.857 1.00 1.00 0.00 2.83
118 119 2.061509 ACCCCGCTAAAAACACTGTT 57.938 45.000 0.00 0.00 0.00 3.16
119 120 2.934886 TACCCCGCTAAAAACACTGT 57.065 45.000 0.00 0.00 0.00 3.55
120 121 4.776795 ATTTACCCCGCTAAAAACACTG 57.223 40.909 0.00 0.00 0.00 3.66
121 122 5.794726 AAATTTACCCCGCTAAAAACACT 57.205 34.783 0.00 0.00 0.00 3.55
122 123 7.943413 TTAAAATTTACCCCGCTAAAAACAC 57.057 32.000 0.00 0.00 0.00 3.32
123 124 7.983484 TGTTTAAAATTTACCCCGCTAAAAACA 59.017 29.630 0.00 0.00 0.00 2.83
124 125 8.362860 TGTTTAAAATTTACCCCGCTAAAAAC 57.637 30.769 0.00 0.00 0.00 2.43
125 126 8.202811 ACTGTTTAAAATTTACCCCGCTAAAAA 58.797 29.630 0.00 0.00 0.00 1.94
126 127 7.652507 CACTGTTTAAAATTTACCCCGCTAAAA 59.347 33.333 0.00 0.00 0.00 1.52
127 128 7.146648 CACTGTTTAAAATTTACCCCGCTAAA 58.853 34.615 0.00 0.00 0.00 1.85
128 129 6.264970 ACACTGTTTAAAATTTACCCCGCTAA 59.735 34.615 0.00 0.00 0.00 3.09
129 130 5.769162 ACACTGTTTAAAATTTACCCCGCTA 59.231 36.000 0.00 0.00 0.00 4.26
130 131 4.585581 ACACTGTTTAAAATTTACCCCGCT 59.414 37.500 0.00 0.00 0.00 5.52
131 132 4.873817 ACACTGTTTAAAATTTACCCCGC 58.126 39.130 0.00 0.00 0.00 6.13
132 133 8.868635 TTTAACACTGTTTAAAATTTACCCCG 57.131 30.769 0.00 0.00 29.81 5.73
176 177 8.075574 GCCGTAATCAATGACATCATAAATTCA 58.924 33.333 0.00 0.00 35.10 2.57
177 178 8.292448 AGCCGTAATCAATGACATCATAAATTC 58.708 33.333 0.00 0.00 35.10 2.17
178 179 8.169977 AGCCGTAATCAATGACATCATAAATT 57.830 30.769 0.00 1.71 35.10 1.82
179 180 7.445096 TGAGCCGTAATCAATGACATCATAAAT 59.555 33.333 0.00 0.00 35.10 1.40
180 181 6.765512 TGAGCCGTAATCAATGACATCATAAA 59.234 34.615 0.00 0.00 35.10 1.40
181 182 6.287525 TGAGCCGTAATCAATGACATCATAA 58.712 36.000 0.00 0.00 35.10 1.90
182 183 5.852827 TGAGCCGTAATCAATGACATCATA 58.147 37.500 0.00 0.00 35.10 2.15
183 184 4.707105 TGAGCCGTAATCAATGACATCAT 58.293 39.130 0.00 0.00 38.41 2.45
184 185 4.135747 TGAGCCGTAATCAATGACATCA 57.864 40.909 0.00 0.00 0.00 3.07
185 186 4.612259 GCATGAGCCGTAATCAATGACATC 60.612 45.833 0.00 0.00 33.58 3.06
186 187 3.251729 GCATGAGCCGTAATCAATGACAT 59.748 43.478 0.00 0.00 33.58 3.06
187 188 2.613595 GCATGAGCCGTAATCAATGACA 59.386 45.455 0.00 0.00 33.58 3.58
188 189 2.348872 CGCATGAGCCGTAATCAATGAC 60.349 50.000 0.00 0.00 37.52 3.06
189 190 1.866601 CGCATGAGCCGTAATCAATGA 59.133 47.619 0.00 0.00 37.52 2.57
190 191 1.661178 GCGCATGAGCCGTAATCAATG 60.661 52.381 10.72 0.00 37.52 2.82
191 192 0.588252 GCGCATGAGCCGTAATCAAT 59.412 50.000 10.72 0.00 37.52 2.57
192 193 0.742635 TGCGCATGAGCCGTAATCAA 60.743 50.000 19.19 0.00 37.52 2.57
193 194 0.532640 ATGCGCATGAGCCGTAATCA 60.533 50.000 24.69 0.00 37.52 2.57
194 195 0.110509 CATGCGCATGAGCCGTAATC 60.111 55.000 40.62 0.00 41.20 1.75
195 196 1.944035 CATGCGCATGAGCCGTAAT 59.056 52.632 40.62 5.66 41.20 1.89
196 197 2.822758 GCATGCGCATGAGCCGTAA 61.823 57.895 45.47 6.91 41.20 3.18
197 198 3.271586 GCATGCGCATGAGCCGTA 61.272 61.111 45.47 7.77 41.20 4.02
209 210 2.126346 GGGAACAACAGCGCATGC 60.126 61.111 11.47 7.91 43.24 4.06
210 211 0.387622 CAAGGGAACAACAGCGCATG 60.388 55.000 11.47 8.37 0.00 4.06
211 212 1.526575 CCAAGGGAACAACAGCGCAT 61.527 55.000 11.47 0.00 0.00 4.73
212 213 2.192861 CCAAGGGAACAACAGCGCA 61.193 57.895 11.47 0.00 0.00 6.09
213 214 1.734388 AACCAAGGGAACAACAGCGC 61.734 55.000 0.00 0.00 0.00 5.92
214 215 0.310854 GAACCAAGGGAACAACAGCG 59.689 55.000 0.00 0.00 0.00 5.18
215 216 0.310854 CGAACCAAGGGAACAACAGC 59.689 55.000 0.00 0.00 0.00 4.40
216 217 0.951558 CCGAACCAAGGGAACAACAG 59.048 55.000 0.00 0.00 0.00 3.16
217 218 1.104577 GCCGAACCAAGGGAACAACA 61.105 55.000 0.00 0.00 0.00 3.33
218 219 0.822121 AGCCGAACCAAGGGAACAAC 60.822 55.000 0.00 0.00 0.00 3.32
219 220 0.821711 CAGCCGAACCAAGGGAACAA 60.822 55.000 0.00 0.00 0.00 2.83
220 221 1.228124 CAGCCGAACCAAGGGAACA 60.228 57.895 0.00 0.00 0.00 3.18
221 222 1.971695 CCAGCCGAACCAAGGGAAC 60.972 63.158 0.00 0.00 0.00 3.62
222 223 2.434331 CCAGCCGAACCAAGGGAA 59.566 61.111 0.00 0.00 0.00 3.97
223 224 4.344865 GCCAGCCGAACCAAGGGA 62.345 66.667 0.00 0.00 0.00 4.20
224 225 4.351054 AGCCAGCCGAACCAAGGG 62.351 66.667 0.00 0.00 0.00 3.95
225 226 2.747855 GAGCCAGCCGAACCAAGG 60.748 66.667 0.00 0.00 0.00 3.61
226 227 1.377725 ATGAGCCAGCCGAACCAAG 60.378 57.895 0.00 0.00 0.00 3.61
227 228 1.675310 CATGAGCCAGCCGAACCAA 60.675 57.895 0.00 0.00 0.00 3.67
228 229 2.046023 CATGAGCCAGCCGAACCA 60.046 61.111 0.00 0.00 0.00 3.67
229 230 2.045926 ACATGAGCCAGCCGAACC 60.046 61.111 0.00 0.00 0.00 3.62
230 231 2.456119 CGACATGAGCCAGCCGAAC 61.456 63.158 0.00 0.00 0.00 3.95
231 232 2.125552 CGACATGAGCCAGCCGAA 60.126 61.111 0.00 0.00 0.00 4.30
232 233 4.819761 GCGACATGAGCCAGCCGA 62.820 66.667 0.00 0.00 0.00 5.54
233 234 4.827087 AGCGACATGAGCCAGCCG 62.827 66.667 0.00 0.00 34.64 5.52
234 235 2.894387 GAGCGACATGAGCCAGCC 60.894 66.667 0.00 0.00 34.64 4.85
235 236 3.260483 CGAGCGACATGAGCCAGC 61.260 66.667 0.00 0.00 34.64 4.85
236 237 1.875813 GACGAGCGACATGAGCCAG 60.876 63.158 0.00 4.40 34.64 4.85
237 238 1.948721 ATGACGAGCGACATGAGCCA 61.949 55.000 0.00 0.00 34.64 4.75
238 239 1.227089 ATGACGAGCGACATGAGCC 60.227 57.895 0.00 0.00 34.64 4.70
239 240 0.803768 ACATGACGAGCGACATGAGC 60.804 55.000 30.69 4.59 45.92 4.26
240 241 0.919300 CACATGACGAGCGACATGAG 59.081 55.000 30.69 22.91 45.92 2.90
241 242 0.458370 CCACATGACGAGCGACATGA 60.458 55.000 30.69 0.00 45.92 3.07
243 244 1.153568 CCCACATGACGAGCGACAT 60.154 57.895 0.00 2.24 0.00 3.06
244 245 2.212900 CTCCCACATGACGAGCGACA 62.213 60.000 0.00 0.00 0.00 4.35
245 246 1.517257 CTCCCACATGACGAGCGAC 60.517 63.158 0.00 0.00 0.00 5.19
246 247 1.677633 TCTCCCACATGACGAGCGA 60.678 57.895 0.00 0.00 0.00 4.93
247 248 1.517257 GTCTCCCACATGACGAGCG 60.517 63.158 0.00 0.00 0.00 5.03
248 249 0.037326 TTGTCTCCCACATGACGAGC 60.037 55.000 0.00 0.00 33.90 5.03
249 250 1.404717 CCTTGTCTCCCACATGACGAG 60.405 57.143 0.00 0.72 41.80 4.18
250 251 0.608130 CCTTGTCTCCCACATGACGA 59.392 55.000 0.00 0.00 33.90 4.20
251 252 0.321671 ACCTTGTCTCCCACATGACG 59.678 55.000 0.00 0.00 33.90 4.35
252 253 1.813513 CACCTTGTCTCCCACATGAC 58.186 55.000 0.00 0.00 33.90 3.06
253 254 0.036732 GCACCTTGTCTCCCACATGA 59.963 55.000 0.00 0.00 33.90 3.07
254 255 0.250858 TGCACCTTGTCTCCCACATG 60.251 55.000 0.00 0.00 33.90 3.21
255 256 0.250901 GTGCACCTTGTCTCCCACAT 60.251 55.000 5.22 0.00 33.90 3.21
256 257 1.148273 GTGCACCTTGTCTCCCACA 59.852 57.895 5.22 0.00 0.00 4.17
257 258 1.961277 CGTGCACCTTGTCTCCCAC 60.961 63.158 12.15 0.00 0.00 4.61
258 259 1.480212 ATCGTGCACCTTGTCTCCCA 61.480 55.000 12.15 0.00 0.00 4.37
259 260 0.321653 AATCGTGCACCTTGTCTCCC 60.322 55.000 12.15 0.00 0.00 4.30
260 261 1.197721 CAAATCGTGCACCTTGTCTCC 59.802 52.381 12.15 0.00 0.00 3.71
261 262 1.197721 CCAAATCGTGCACCTTGTCTC 59.802 52.381 12.15 0.00 0.00 3.36
262 263 1.202758 TCCAAATCGTGCACCTTGTCT 60.203 47.619 12.15 0.00 0.00 3.41
263 264 1.197721 CTCCAAATCGTGCACCTTGTC 59.802 52.381 12.15 0.00 0.00 3.18
264 265 1.238439 CTCCAAATCGTGCACCTTGT 58.762 50.000 12.15 0.00 0.00 3.16
265 266 0.109597 GCTCCAAATCGTGCACCTTG 60.110 55.000 12.15 12.05 0.00 3.61
266 267 0.537143 TGCTCCAAATCGTGCACCTT 60.537 50.000 12.15 2.03 0.00 3.50
267 268 0.537143 TTGCTCCAAATCGTGCACCT 60.537 50.000 12.15 0.00 35.01 4.00
268 269 0.109597 CTTGCTCCAAATCGTGCACC 60.110 55.000 12.15 0.00 35.01 5.01
269 270 0.730494 GCTTGCTCCAAATCGTGCAC 60.730 55.000 6.82 6.82 35.01 4.57
270 271 1.580942 GCTTGCTCCAAATCGTGCA 59.419 52.632 0.00 0.00 0.00 4.57
271 272 1.153958 GGCTTGCTCCAAATCGTGC 60.154 57.895 0.00 0.00 0.00 5.34
272 273 0.962356 AGGGCTTGCTCCAAATCGTG 60.962 55.000 0.00 0.00 0.00 4.35
296 297 0.518636 CCCATTTATGAGCCGATGCG 59.481 55.000 0.00 0.00 44.33 4.73
298 299 0.883833 GGCCCATTTATGAGCCGATG 59.116 55.000 0.00 0.00 41.89 3.84
303 304 1.035139 CACCAGGCCCATTTATGAGC 58.965 55.000 0.00 0.00 0.00 4.26
307 308 0.261696 GACCCACCAGGCCCATTTAT 59.738 55.000 0.00 0.00 40.58 1.40
434 441 9.244799 GTGTTAAAAATTTCTCGAAATTGAGGT 57.755 29.630 15.93 6.78 46.76 3.85
496 1260 9.989869 TGCACAATTTTAAATGCATGATTAATG 57.010 25.926 9.56 1.15 42.92 1.90
503 1267 7.577979 ACTCTTTGCACAATTTTAAATGCATG 58.422 30.769 13.41 10.27 46.75 4.06
504 1268 7.733402 ACTCTTTGCACAATTTTAAATGCAT 57.267 28.000 13.41 0.00 46.75 3.96
505 1269 8.830201 ATACTCTTTGCACAATTTTAAATGCA 57.170 26.923 9.56 9.56 45.94 3.96
517 1281 9.462174 CAAACATTTTTCTATACTCTTTGCACA 57.538 29.630 0.00 0.00 0.00 4.57
518 1282 9.463443 ACAAACATTTTTCTATACTCTTTGCAC 57.537 29.630 0.00 0.00 0.00 4.57
519 1283 9.462174 CACAAACATTTTTCTATACTCTTTGCA 57.538 29.630 0.00 0.00 0.00 4.08
520 1284 9.677567 TCACAAACATTTTTCTATACTCTTTGC 57.322 29.630 0.00 0.00 0.00 3.68
753 1518 3.493129 TCGCATATCGGCTAATGTTTGTC 59.507 43.478 0.00 0.00 39.05 3.18
795 1562 4.091549 TCCACGTACAAAACCCTAGAGAT 58.908 43.478 0.00 0.00 0.00 2.75
824 1591 0.951558 GGGTGCGTGTCTGATTTGTT 59.048 50.000 0.00 0.00 0.00 2.83
825 1592 0.179032 TGGGTGCGTGTCTGATTTGT 60.179 50.000 0.00 0.00 0.00 2.83
826 1593 0.950836 TTGGGTGCGTGTCTGATTTG 59.049 50.000 0.00 0.00 0.00 2.32
833 1601 0.535553 TTAGGGTTTGGGTGCGTGTC 60.536 55.000 0.00 0.00 0.00 3.67
869 1637 1.560505 CCCATCACTTTTTCCCCCTG 58.439 55.000 0.00 0.00 0.00 4.45
934 1703 7.148018 CCCCAGTCATTCTAGTAGTACGTTTTA 60.148 40.741 0.00 0.00 0.00 1.52
943 1712 1.341531 CGCCCCCAGTCATTCTAGTAG 59.658 57.143 0.00 0.00 0.00 2.57
957 1726 4.547367 CGGATTGTCCTCGCCCCC 62.547 72.222 0.00 0.00 33.30 5.40
988 1761 0.622665 CTGTCCATCCCAGCCTCTTT 59.377 55.000 0.00 0.00 0.00 2.52
996 1769 4.100084 CTGCCGCTGTCCATCCCA 62.100 66.667 0.00 0.00 0.00 4.37
1149 1922 0.393537 CCTCACCCAATGGCACTCTC 60.394 60.000 0.00 0.00 33.59 3.20
1158 1931 4.096003 CGGCCGTCCTCACCCAAT 62.096 66.667 19.50 0.00 0.00 3.16
1269 2042 2.353208 GCTGGTATCTTGGAGGCGATAG 60.353 54.545 0.00 0.00 0.00 2.08
1275 2048 1.339610 CTCTCGCTGGTATCTTGGAGG 59.660 57.143 0.00 0.00 0.00 4.30
1313 2086 7.392494 AGCCATTCAGCAATCATATAAGATG 57.608 36.000 0.00 0.00 34.23 2.90
1314 2087 6.602406 GGAGCCATTCAGCAATCATATAAGAT 59.398 38.462 0.00 0.00 34.23 2.40
1315 2088 5.942236 GGAGCCATTCAGCAATCATATAAGA 59.058 40.000 0.00 0.00 34.23 2.10
1316 2089 5.944599 AGGAGCCATTCAGCAATCATATAAG 59.055 40.000 0.00 0.00 34.23 1.73
1317 2090 5.884322 AGGAGCCATTCAGCAATCATATAA 58.116 37.500 0.00 0.00 34.23 0.98
1319 2092 4.383931 AGGAGCCATTCAGCAATCATAT 57.616 40.909 0.00 0.00 34.23 1.78
1377 2150 0.539986 GCCAACCTCCTACATCGGAA 59.460 55.000 0.00 0.00 31.44 4.30
1378 2151 0.325296 AGCCAACCTCCTACATCGGA 60.325 55.000 0.00 0.00 0.00 4.55
1379 2152 0.105039 GAGCCAACCTCCTACATCGG 59.895 60.000 0.00 0.00 34.35 4.18
1380 2153 3.669354 GAGCCAACCTCCTACATCG 57.331 57.895 0.00 0.00 34.35 3.84
1526 2299 9.179909 TGTCTCTGGTTTTTACTGAAACAAATA 57.820 29.630 3.32 0.00 40.44 1.40
1527 2300 8.062065 TGTCTCTGGTTTTTACTGAAACAAAT 57.938 30.769 3.32 0.00 40.44 2.32
1547 2320 5.048504 TGAAAAATGCAGAGGTTGATGTCTC 60.049 40.000 0.00 0.00 0.00 3.36
1553 2326 6.409524 AATCTTGAAAAATGCAGAGGTTGA 57.590 33.333 0.00 0.00 0.00 3.18
1605 2378 4.862641 AGGATTTTGGCCACAGTACTAT 57.137 40.909 3.88 0.00 0.00 2.12
1606 2379 5.765576 TTAGGATTTTGGCCACAGTACTA 57.234 39.130 3.88 2.88 0.00 1.82
1607 2380 4.650972 TTAGGATTTTGGCCACAGTACT 57.349 40.909 3.88 4.17 0.00 2.73
1693 2466 7.335627 ACACATCTTATATTTTGGAACGAGGA 58.664 34.615 0.00 0.00 0.00 3.71
1777 2654 5.498393 TGTGTTTAACCAAGTGACCAAGTA 58.502 37.500 0.00 0.00 0.00 2.24
1807 2684 9.107367 CGTTCATTAATTTTCAGAGAAGTCAAC 57.893 33.333 0.00 0.00 0.00 3.18
2002 2881 7.286775 ACCCATGCGTTTAAATGGTCTATAAAT 59.713 33.333 9.42 0.00 41.59 1.40
2003 2882 6.603997 ACCCATGCGTTTAAATGGTCTATAAA 59.396 34.615 9.42 0.00 41.59 1.40
2027 2906 5.587844 AGAAATACAGTGCAATCATGAGGAC 59.412 40.000 0.09 0.00 0.00 3.85
2104 2983 2.532250 AAATGGGGTTGGATCCTCAC 57.468 50.000 14.23 9.62 41.11 3.51
2105 2984 4.683766 TTTAAATGGGGTTGGATCCTCA 57.316 40.909 14.23 4.22 42.62 3.86
2124 3003 3.703001 ACAGTGGGTCGAGATTGATTT 57.297 42.857 0.00 0.00 0.00 2.17
2159 3041 4.243270 CGTGGTCTCTTTAGGGTAAACAG 58.757 47.826 0.00 0.00 0.00 3.16
2162 3044 4.961438 AACGTGGTCTCTTTAGGGTAAA 57.039 40.909 0.00 0.00 0.00 2.01
2166 3048 5.359009 TGACTATAACGTGGTCTCTTTAGGG 59.641 44.000 0.00 0.00 38.96 3.53
2205 3087 7.391554 TCTCAAATATAGCTGCACAGTTCTTTT 59.608 33.333 1.02 0.00 0.00 2.27
2206 3088 6.881065 TCTCAAATATAGCTGCACAGTTCTTT 59.119 34.615 1.02 0.00 0.00 2.52
2207 3089 6.409704 TCTCAAATATAGCTGCACAGTTCTT 58.590 36.000 1.02 0.00 0.00 2.52
2209 3091 6.668541 TTCTCAAATATAGCTGCACAGTTC 57.331 37.500 1.02 0.00 0.00 3.01
2266 3263 5.871524 TCCTTCATGAGAATGAGAAAGTTCG 59.128 40.000 0.00 0.00 32.31 3.95
2288 3285 9.087424 GAAACTAAATATTTGGAGCATTTGTCC 57.913 33.333 17.45 0.00 34.31 4.02
2412 3412 9.516314 CGCAATATTATCGATATCCTGAAGTTA 57.484 33.333 5.84 0.00 30.50 2.24
2527 3529 9.799106 TTCAATTAAAAGGAGATGAAGAGAACT 57.201 29.630 0.00 0.00 0.00 3.01
2647 3649 0.737219 CAGGCATGCAAGAGGCTAAC 59.263 55.000 21.36 0.00 45.15 2.34
2808 3810 4.827692 TGTGCGGTTGAAGATGTAGTTAT 58.172 39.130 0.00 0.00 0.00 1.89
2838 3840 0.389948 ATGCTCCACGACGAAAGGAC 60.390 55.000 0.00 2.39 0.00 3.85
2869 3871 0.393808 TCTTAGGGCCGGTCATTTGC 60.394 55.000 9.07 0.00 0.00 3.68
2940 3942 1.068434 CTGCTTCTCCGAATCCTCTCC 59.932 57.143 0.00 0.00 0.00 3.71
2948 3950 4.478206 AATCATCTTCTGCTTCTCCGAA 57.522 40.909 0.00 0.00 0.00 4.30
2992 3994 2.930040 CGAGGTTATGTCGTTGAAGCAT 59.070 45.455 0.00 0.00 32.62 3.79
3022 4024 3.421826 CGATCCGTCTTTTGTTCTTCGTG 60.422 47.826 0.00 0.00 0.00 4.35
3033 4035 1.813859 TCGCCATCGATCCGTCTTT 59.186 52.632 12.93 0.00 40.21 2.52
3140 4142 1.745653 GTTCAGCCTTATCAAGCCACC 59.254 52.381 0.00 0.00 0.00 4.61
3283 4285 2.650608 TGATCGAGCATCAACGATACG 58.349 47.619 0.00 0.00 46.71 3.06
3399 4401 3.698040 GGTTACCTTCACCTCGATAGTGA 59.302 47.826 12.92 12.92 42.36 3.41
3443 4445 6.754535 AGCAATTTGGACCCAAAAGGCTTAT 61.755 40.000 24.81 12.61 46.80 1.73
3444 4446 5.488192 AGCAATTTGGACCCAAAAGGCTTA 61.488 41.667 24.81 4.22 46.80 3.09
3471 4473 2.401766 GCTGCCATGAACTCCCACG 61.402 63.158 0.00 0.00 0.00 4.94
3635 4799 3.868619 AGGTACCAGCAACCTACAAAA 57.131 42.857 15.94 0.00 45.69 2.44
3643 4807 2.543777 TGAACAGAGGTACCAGCAAC 57.456 50.000 15.94 1.51 0.00 4.17
3685 4849 1.204228 GCATCCAAACATGCGCATCG 61.204 55.000 22.51 18.10 39.92 3.84
3708 4872 6.931281 TGAGAATCAGTCTAAAGAAACCACAG 59.069 38.462 0.00 0.00 42.56 3.66
3725 4889 8.853077 ACAATACTTTCTTGTGATGAGAATCA 57.147 30.769 0.00 0.00 41.84 2.57
3754 4924 4.263506 CCCAGTCTGAAAGTCCCAAGTATT 60.264 45.833 0.00 0.00 33.76 1.89
3760 4930 2.257207 CTACCCAGTCTGAAAGTCCCA 58.743 52.381 0.00 0.00 33.76 4.37
3766 4936 4.967084 TTTGCTACTACCCAGTCTGAAA 57.033 40.909 0.00 0.00 36.14 2.69
3775 4949 6.884836 CAGGGGAATTATATTTGCTACTACCC 59.115 42.308 0.00 0.00 0.00 3.69
3805 4979 4.863152 TGTCATGTGTCTTATGAATGCG 57.137 40.909 0.00 0.00 36.41 4.73
3810 4984 5.937975 TCCAGATGTCATGTGTCTTATGA 57.062 39.130 8.98 0.00 32.44 2.15
3879 5054 4.202101 CCAACATTAACAAGTGTGAAGGCA 60.202 41.667 0.00 0.00 0.00 4.75
3880 5055 4.298332 CCAACATTAACAAGTGTGAAGGC 58.702 43.478 0.00 0.00 0.00 4.35
3882 5057 5.186996 AGCCAACATTAACAAGTGTGAAG 57.813 39.130 0.00 0.00 0.00 3.02
3883 5058 5.347342 CAAGCCAACATTAACAAGTGTGAA 58.653 37.500 0.00 0.00 0.00 3.18
3884 5059 4.736168 GCAAGCCAACATTAACAAGTGTGA 60.736 41.667 0.00 0.00 0.00 3.58
3885 5060 3.490526 GCAAGCCAACATTAACAAGTGTG 59.509 43.478 0.00 0.00 0.00 3.82
3886 5061 3.492482 GGCAAGCCAACATTAACAAGTGT 60.492 43.478 6.14 0.00 35.81 3.55
3887 5062 3.059166 GGCAAGCCAACATTAACAAGTG 58.941 45.455 6.14 0.00 35.81 3.16
3888 5063 2.697751 TGGCAAGCCAACATTAACAAGT 59.302 40.909 12.11 0.00 44.12 3.16
3889 5064 3.383620 TGGCAAGCCAACATTAACAAG 57.616 42.857 12.11 0.00 44.12 3.16
3917 5092 0.037590 AACCGTAAATCTGGCTGCCA 59.962 50.000 21.96 21.96 0.00 4.92
3925 5100 2.450609 ACTCGCACAACCGTAAATCT 57.549 45.000 0.00 0.00 0.00 2.40
3933 5108 0.307760 CCACAAGAACTCGCACAACC 59.692 55.000 0.00 0.00 0.00 3.77
4000 5175 7.873719 TTACTCAGATTTTTGTTGTTCCTGA 57.126 32.000 0.00 0.00 0.00 3.86
4043 5218 6.092748 GGTTCTGTAAAATAGTGGCACAATG 58.907 40.000 21.41 0.00 44.16 2.82
4085 5260 4.300189 AGTCGCTGTTTTGTGCAAATTA 57.700 36.364 0.00 0.00 0.00 1.40
4157 5332 2.377310 CGTAAGCCCACCGTTGACG 61.377 63.158 0.00 0.00 39.44 4.35
4170 5345 6.980051 AATAAAAGTTCAGGTAGGCGTAAG 57.020 37.500 0.00 0.00 43.44 2.34
4171 5346 6.818142 GGTAATAAAAGTTCAGGTAGGCGTAA 59.182 38.462 0.00 0.00 0.00 3.18
4173 5348 5.181009 GGTAATAAAAGTTCAGGTAGGCGT 58.819 41.667 0.00 0.00 0.00 5.68
4174 5349 5.180271 TGGTAATAAAAGTTCAGGTAGGCG 58.820 41.667 0.00 0.00 0.00 5.52
4176 5351 9.238368 TCAATTGGTAATAAAAGTTCAGGTAGG 57.762 33.333 5.42 0.00 0.00 3.18
4178 5353 9.238368 CCTCAATTGGTAATAAAAGTTCAGGTA 57.762 33.333 5.42 0.00 0.00 3.08
4179 5354 7.947890 TCCTCAATTGGTAATAAAAGTTCAGGT 59.052 33.333 5.42 0.00 0.00 4.00
4180 5355 8.348285 TCCTCAATTGGTAATAAAAGTTCAGG 57.652 34.615 5.42 0.00 0.00 3.86
4181 5356 7.970614 GCTCCTCAATTGGTAATAAAAGTTCAG 59.029 37.037 5.42 0.00 0.00 3.02
4183 5358 6.967199 CGCTCCTCAATTGGTAATAAAAGTTC 59.033 38.462 5.42 0.00 0.00 3.01
4184 5359 6.127730 CCGCTCCTCAATTGGTAATAAAAGTT 60.128 38.462 5.42 0.00 0.00 2.66
4186 5361 5.357032 ACCGCTCCTCAATTGGTAATAAAAG 59.643 40.000 5.42 0.00 0.00 2.27
4187 5362 5.258051 ACCGCTCCTCAATTGGTAATAAAA 58.742 37.500 5.42 0.00 0.00 1.52
4189 5364 4.497291 ACCGCTCCTCAATTGGTAATAA 57.503 40.909 5.42 0.00 0.00 1.40
4190 5365 4.497291 AACCGCTCCTCAATTGGTAATA 57.503 40.909 5.42 0.00 31.36 0.98
4192 5367 2.871096 AACCGCTCCTCAATTGGTAA 57.129 45.000 5.42 0.00 31.36 2.85
4193 5368 2.568062 TGTAACCGCTCCTCAATTGGTA 59.432 45.455 5.42 0.00 31.36 3.25
4194 5369 1.349688 TGTAACCGCTCCTCAATTGGT 59.650 47.619 5.42 0.00 33.45 3.67
4195 5370 2.107950 TGTAACCGCTCCTCAATTGG 57.892 50.000 5.42 0.00 0.00 3.16
4196 5371 3.270027 TCATGTAACCGCTCCTCAATTG 58.730 45.455 0.00 0.00 0.00 2.32
4197 5372 3.535561 CTCATGTAACCGCTCCTCAATT 58.464 45.455 0.00 0.00 0.00 2.32
4198 5373 2.158900 CCTCATGTAACCGCTCCTCAAT 60.159 50.000 0.00 0.00 0.00 2.57
4199 5374 1.207089 CCTCATGTAACCGCTCCTCAA 59.793 52.381 0.00 0.00 0.00 3.02
4202 5377 0.824759 GTCCTCATGTAACCGCTCCT 59.175 55.000 0.00 0.00 0.00 3.69
4205 5380 1.478510 CTCTGTCCTCATGTAACCGCT 59.521 52.381 0.00 0.00 0.00 5.52
4206 5381 1.204941 ACTCTGTCCTCATGTAACCGC 59.795 52.381 0.00 0.00 0.00 5.68
4208 5383 5.401531 TGTAACTCTGTCCTCATGTAACC 57.598 43.478 0.00 0.00 0.00 2.85
4210 5385 7.202001 CCCATATGTAACTCTGTCCTCATGTAA 60.202 40.741 1.24 0.00 0.00 2.41
4212 5387 5.070981 CCCATATGTAACTCTGTCCTCATGT 59.929 44.000 1.24 0.00 0.00 3.21
4213 5388 5.512060 CCCCATATGTAACTCTGTCCTCATG 60.512 48.000 1.24 0.00 0.00 3.07
4214 5389 4.594920 CCCCATATGTAACTCTGTCCTCAT 59.405 45.833 1.24 0.00 0.00 2.90
4235 5948 1.205055 AATTTCGTCTCTCCTCCCCC 58.795 55.000 0.00 0.00 0.00 5.40
4237 5950 4.434520 CTTGTAATTTCGTCTCTCCTCCC 58.565 47.826 0.00 0.00 0.00 4.30
4238 5951 3.866327 GCTTGTAATTTCGTCTCTCCTCC 59.134 47.826 0.00 0.00 0.00 4.30
4239 5952 4.495422 TGCTTGTAATTTCGTCTCTCCTC 58.505 43.478 0.00 0.00 0.00 3.71
4240 5953 4.537135 TGCTTGTAATTTCGTCTCTCCT 57.463 40.909 0.00 0.00 0.00 3.69
4242 5955 6.467723 TCTTTGCTTGTAATTTCGTCTCTC 57.532 37.500 0.00 0.00 0.00 3.20
4243 5956 6.861065 TTCTTTGCTTGTAATTTCGTCTCT 57.139 33.333 0.00 0.00 0.00 3.10
4244 5957 7.908193 TTTTCTTTGCTTGTAATTTCGTCTC 57.092 32.000 0.00 0.00 0.00 3.36
4307 6244 7.325097 CGTCTTTGTTTGTGTCTTTGTAAACTT 59.675 33.333 0.00 0.00 34.88 2.66
4353 6290 6.350629 AGGGATGGAGATTTTGAAGTTTTG 57.649 37.500 0.00 0.00 0.00 2.44
4385 6323 8.358895 GCTCTTATATTAGTTTACGAAGGGAGT 58.641 37.037 0.00 0.00 0.00 3.85
4386 6324 7.537991 CGCTCTTATATTAGTTTACGAAGGGAG 59.462 40.741 0.00 0.00 0.00 4.30
4387 6325 7.013655 ACGCTCTTATATTAGTTTACGAAGGGA 59.986 37.037 0.00 0.00 0.00 4.20
4388 6326 7.144000 ACGCTCTTATATTAGTTTACGAAGGG 58.856 38.462 0.00 0.00 0.00 3.95
4389 6327 8.571461 AACGCTCTTATATTAGTTTACGAAGG 57.429 34.615 0.00 0.00 0.00 3.46
4437 6375 8.148999 CCTCCGTAAACTAATATAAGAGCCTTT 58.851 37.037 0.00 0.00 0.00 3.11
4438 6376 7.256225 CCCTCCGTAAACTAATATAAGAGCCTT 60.256 40.741 0.00 0.00 0.00 4.35
4439 6377 6.210984 CCCTCCGTAAACTAATATAAGAGCCT 59.789 42.308 0.00 0.00 0.00 4.58
4440 6378 6.210185 TCCCTCCGTAAACTAATATAAGAGCC 59.790 42.308 0.00 0.00 0.00 4.70
4441 6379 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4442 6380 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4443 6381 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
4447 6385 7.930325 GCTTTTACTCCCTCCGTAAACTAATAT 59.070 37.037 0.00 0.00 36.78 1.28
4448 6386 7.124750 AGCTTTTACTCCCTCCGTAAACTAATA 59.875 37.037 0.00 0.00 36.78 0.98
4449 6387 6.070366 AGCTTTTACTCCCTCCGTAAACTAAT 60.070 38.462 0.00 0.00 36.78 1.73
4450 6388 5.246883 AGCTTTTACTCCCTCCGTAAACTAA 59.753 40.000 0.00 0.00 36.78 2.24
4451 6389 4.774200 AGCTTTTACTCCCTCCGTAAACTA 59.226 41.667 0.00 0.00 36.78 2.24
4452 6390 3.581770 AGCTTTTACTCCCTCCGTAAACT 59.418 43.478 0.00 0.00 36.78 2.66
4453 6391 3.935315 AGCTTTTACTCCCTCCGTAAAC 58.065 45.455 0.00 0.00 36.78 2.01
4454 6392 5.743636 TTAGCTTTTACTCCCTCCGTAAA 57.256 39.130 0.00 0.00 35.65 2.01
4455 6393 5.945144 ATTAGCTTTTACTCCCTCCGTAA 57.055 39.130 0.00 0.00 0.00 3.18
4456 6394 7.177392 GGTATATTAGCTTTTACTCCCTCCGTA 59.823 40.741 0.00 0.00 0.00 4.02
4457 6395 6.014755 GGTATATTAGCTTTTACTCCCTCCGT 60.015 42.308 0.00 0.00 0.00 4.69
4458 6396 6.014840 TGGTATATTAGCTTTTACTCCCTCCG 60.015 42.308 0.00 0.00 0.00 4.63
4459 6397 7.312415 TGGTATATTAGCTTTTACTCCCTCC 57.688 40.000 0.00 0.00 0.00 4.30
4460 6398 8.208903 TGTTGGTATATTAGCTTTTACTCCCTC 58.791 37.037 0.00 0.00 0.00 4.30
4461 6399 8.097791 TGTTGGTATATTAGCTTTTACTCCCT 57.902 34.615 0.00 0.00 0.00 4.20
4462 6400 8.618677 GTTGTTGGTATATTAGCTTTTACTCCC 58.381 37.037 0.00 0.00 0.00 4.30
4463 6401 8.618677 GGTTGTTGGTATATTAGCTTTTACTCC 58.381 37.037 0.00 0.00 0.00 3.85
4464 6402 8.618677 GGGTTGTTGGTATATTAGCTTTTACTC 58.381 37.037 0.00 0.00 0.00 2.59
4465 6403 8.110908 TGGGTTGTTGGTATATTAGCTTTTACT 58.889 33.333 0.00 0.00 0.00 2.24
4466 6404 8.283699 TGGGTTGTTGGTATATTAGCTTTTAC 57.716 34.615 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.