Multiple sequence alignment - TraesCS3D01G111100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G111100 chr3D 100.000 5207 0 0 1 5207 64641300 64646506 0.000000e+00 9616.0
1 TraesCS3D01G111100 chr3D 77.451 102 23 0 3219 3320 62329662 62329763 1.570000e-05 62.1
2 TraesCS3D01G111100 chr3D 89.362 47 5 0 3279 3325 23173652 23173606 5.630000e-05 60.2
3 TraesCS3D01G111100 chr3B 91.895 3862 139 56 797 4555 107663157 107666947 0.000000e+00 5238.0
4 TraesCS3D01G111100 chr3B 92.308 195 8 6 4902 5095 107667957 107668145 2.390000e-68 270.0
5 TraesCS3D01G111100 chr3B 94.262 122 6 1 4637 4757 107666946 107667067 8.900000e-43 185.0
6 TraesCS3D01G111100 chr3B 100.000 32 0 0 3291 3322 630401416 630401385 5.630000e-05 60.2
7 TraesCS3D01G111100 chr3A 95.690 1717 56 12 2842 4555 75408053 75409754 0.000000e+00 2745.0
8 TraesCS3D01G111100 chr3A 89.706 2040 81 51 807 2733 75405886 75407909 0.000000e+00 2484.0
9 TraesCS3D01G111100 chr3A 87.788 737 80 8 1 731 75405153 75405885 0.000000e+00 854.0
10 TraesCS3D01G111100 chr3A 92.188 320 13 5 4889 5207 75410758 75411066 4.790000e-120 442.0
11 TraesCS3D01G111100 chr3A 95.041 121 5 1 4637 4757 75409753 75409872 6.880000e-44 189.0
12 TraesCS3D01G111100 chr3A 90.566 106 7 3 4549 4653 438489128 438489025 2.530000e-28 137.0
13 TraesCS3D01G111100 chr3A 82.576 132 15 6 4155 4280 75442341 75442470 5.510000e-20 110.0
14 TraesCS3D01G111100 chr1A 89.147 129 11 3 4752 4878 30456961 30457088 1.940000e-34 158.0
15 TraesCS3D01G111100 chr1A 95.082 61 3 0 1182 1242 388156902 388156962 4.290000e-16 97.1
16 TraesCS3D01G111100 chr1B 94.624 93 5 0 4550 4642 661504248 661504156 1.510000e-30 145.0
17 TraesCS3D01G111100 chr1B 95.082 61 3 0 1182 1242 418669413 418669473 4.290000e-16 97.1
18 TraesCS3D01G111100 chr7D 92.784 97 7 0 4542 4638 34845545 34845641 1.950000e-29 141.0
19 TraesCS3D01G111100 chr7B 92.079 101 7 1 4541 4640 167622221 167622321 1.950000e-29 141.0
20 TraesCS3D01G111100 chr7B 91.837 98 8 0 4541 4638 713378761 713378858 2.530000e-28 137.0
21 TraesCS3D01G111100 chr4A 93.684 95 5 1 4545 4638 8583160 8583066 1.950000e-29 141.0
22 TraesCS3D01G111100 chrUn 91.753 97 8 0 4542 4638 132121244 132121148 9.100000e-28 135.0
23 TraesCS3D01G111100 chr7A 90.385 104 8 2 4535 4638 14445557 14445658 9.100000e-28 135.0
24 TraesCS3D01G111100 chr7A 95.833 48 1 1 4829 4876 35891922 35891876 5.590000e-10 76.8
25 TraesCS3D01G111100 chr5D 91.000 100 9 0 4556 4655 524326476 524326377 9.100000e-28 135.0
26 TraesCS3D01G111100 chr1D 73.718 156 37 3 3167 3320 308262071 308262224 2.030000e-04 58.4
27 TraesCS3D01G111100 chr5B 90.476 42 4 0 3279 3320 443698272 443698313 7.280000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G111100 chr3D 64641300 64646506 5206 False 9616.000000 9616 100.000000 1 5207 1 chr3D.!!$F2 5206
1 TraesCS3D01G111100 chr3B 107663157 107668145 4988 False 1897.666667 5238 92.821667 797 5095 3 chr3B.!!$F1 4298
2 TraesCS3D01G111100 chr3A 75405153 75411066 5913 False 1342.800000 2745 92.082600 1 5207 5 chr3A.!!$F2 5206

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 939 0.035820 GTGGAGTTTACCGCCATCCA 60.036 55.0 0.0 0.0 37.71 3.41 F
2756 2929 0.253044 TGCCTACCTCTTGCATGACC 59.747 55.0 0.0 0.0 0.00 4.02 F
2954 3210 0.673437 GTTGTGGTGGTGTGGAATGG 59.327 55.0 0.0 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2925 3181 0.248866 CCACCACAACGTCCAAAAGC 60.249 55.0 0.0 0.0 0.00 3.51 R
3566 3823 1.019278 GCCCGAGATGAAACAGCGAA 61.019 55.0 0.0 0.0 0.00 4.70 R
4880 5144 0.035439 AGTCACTAATTGTGCGGGGG 60.035 55.0 0.0 0.0 45.81 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.445238 GAGGCTATCGGCGAGATGC 60.445 63.158 17.22 18.08 42.94 3.91
66 67 2.984471 GCGTAAAGTCAGAATCGTCACA 59.016 45.455 0.00 0.00 0.00 3.58
67 68 3.181543 GCGTAAAGTCAGAATCGTCACAC 60.182 47.826 0.00 0.00 0.00 3.82
80 81 1.885388 TCACACGTGGCTTCCAACG 60.885 57.895 21.57 0.00 34.18 4.10
81 82 2.590575 ACACGTGGCTTCCAACGG 60.591 61.111 21.57 0.00 34.18 4.44
97 98 0.667993 ACGGTGGCATGTGTTTTGAG 59.332 50.000 0.00 0.00 0.00 3.02
118 119 0.331278 TCCCAATTCGCCCACTCATT 59.669 50.000 0.00 0.00 0.00 2.57
169 172 2.089349 GCGCGTGACACTCCTCTTC 61.089 63.158 8.43 0.00 0.00 2.87
176 179 0.968393 GACACTCCTCTTCCTCGGCT 60.968 60.000 0.00 0.00 0.00 5.52
212 216 2.722201 ATGCGGTTCCTCCTCGACC 61.722 63.158 0.00 0.00 0.00 4.79
235 239 0.972883 ATCCGCTTCTCCTCCTATGC 59.027 55.000 0.00 0.00 0.00 3.14
236 240 0.397114 TCCGCTTCTCCTCCTATGCA 60.397 55.000 0.00 0.00 0.00 3.96
241 245 3.401182 GCTTCTCCTCCTATGCAATCTG 58.599 50.000 0.00 0.00 0.00 2.90
244 248 1.698532 CTCCTCCTATGCAATCTGCCT 59.301 52.381 0.00 0.00 44.23 4.75
264 268 1.075226 TCCGGCCATAGAGGAAGCT 60.075 57.895 2.24 0.00 41.22 3.74
266 270 1.596477 CGGCCATAGAGGAAGCTGC 60.596 63.158 2.24 0.00 41.22 5.25
267 271 1.528824 GGCCATAGAGGAAGCTGCA 59.471 57.895 0.00 0.00 41.22 4.41
303 307 3.675502 CGAGCTAGATCATTCATGGCGAT 60.676 47.826 8.99 0.00 0.00 4.58
326 330 3.019564 ACCTTTTTATAGCTGCAGCCTG 58.980 45.455 34.39 14.86 43.38 4.85
347 351 4.056125 GCGGCAGGGAAAAGTGGC 62.056 66.667 0.00 0.00 35.93 5.01
360 364 1.708341 AAGTGGCTGAAAACATGGCT 58.292 45.000 0.00 0.00 0.00 4.75
361 365 0.963962 AGTGGCTGAAAACATGGCTG 59.036 50.000 0.00 0.00 0.00 4.85
362 366 0.675633 GTGGCTGAAAACATGGCTGT 59.324 50.000 0.00 0.00 37.12 4.40
368 372 4.559153 GCTGAAAACATGGCTGTAATTGT 58.441 39.130 0.00 0.00 33.36 2.71
382 386 1.805428 AATTGTCGTGGGCAGTTGGC 61.805 55.000 0.00 0.00 43.74 4.52
399 403 3.630148 CATGCGACGGCCGTCATC 61.630 66.667 46.26 37.61 44.77 2.92
400 404 3.838271 ATGCGACGGCCGTCATCT 61.838 61.111 46.26 31.26 44.77 2.90
408 413 1.209275 CGGCCGTCATCTTTAGCTCG 61.209 60.000 19.50 0.00 0.00 5.03
416 421 2.760650 TCATCTTTAGCTCGCTTCCAGA 59.239 45.455 0.00 0.00 0.00 3.86
418 423 3.170791 TCTTTAGCTCGCTTCCAGATG 57.829 47.619 0.00 0.00 0.00 2.90
420 425 2.879002 TTAGCTCGCTTCCAGATGAG 57.121 50.000 0.00 0.00 0.00 2.90
425 430 2.481854 CTCGCTTCCAGATGAGATTGG 58.518 52.381 0.00 0.00 35.74 3.16
432 437 2.362397 TCCAGATGAGATTGGCGTCTAC 59.638 50.000 0.00 0.00 34.38 2.59
451 456 2.610694 CCATCCGCGCCATTAGCAG 61.611 63.158 0.00 0.00 44.04 4.24
455 460 1.889105 CCGCGCCATTAGCAGTGAT 60.889 57.895 0.00 0.00 44.04 3.06
461 466 2.742856 CGCCATTAGCAGTGATGGAAGA 60.743 50.000 12.40 0.00 44.49 2.87
473 478 3.316308 GTGATGGAAGATTGGCCATGTAC 59.684 47.826 6.09 0.00 44.60 2.90
482 487 0.752658 TGGCCATGTACGAGGATGAG 59.247 55.000 0.00 0.00 0.00 2.90
488 493 1.776662 TGTACGAGGATGAGAAGGGG 58.223 55.000 0.00 0.00 0.00 4.79
489 494 1.006758 TGTACGAGGATGAGAAGGGGT 59.993 52.381 0.00 0.00 0.00 4.95
492 497 1.343478 ACGAGGATGAGAAGGGGTGAT 60.343 52.381 0.00 0.00 0.00 3.06
504 509 2.112815 GGGTGATTTCCCTTCCGCG 61.113 63.158 0.00 0.00 43.85 6.46
521 526 1.631072 CGCGAGCGGTTGACAATAG 59.369 57.895 9.90 0.00 35.56 1.73
525 530 1.735700 CGAGCGGTTGACAATAGAGCA 60.736 52.381 0.00 0.00 0.00 4.26
559 565 2.812011 ACGCCTCACAACCTTCAAATAC 59.188 45.455 0.00 0.00 0.00 1.89
562 568 4.072131 GCCTCACAACCTTCAAATACAGA 58.928 43.478 0.00 0.00 0.00 3.41
582 588 1.312371 GGCTTGCCGGCTGTATTTGA 61.312 55.000 29.70 0.07 34.85 2.69
593 599 2.664424 GCTGTATTTGAAGCGCGTTTCA 60.664 45.455 30.70 30.70 35.38 2.69
602 608 4.788690 TGAAGCGCGTTTCAAAATTATGA 58.211 34.783 31.91 9.00 34.32 2.15
607 613 5.682862 AGCGCGTTTCAAAATTATGATGATC 59.317 36.000 8.43 0.00 0.00 2.92
618 624 2.917751 GATGATCGGGAGGGCGGA 60.918 66.667 0.00 0.00 0.00 5.54
634 640 1.587043 CGGAGTGGCGACTCTTCTGA 61.587 60.000 25.43 0.00 46.96 3.27
638 644 1.009389 GTGGCGACTCTTCTGAACCG 61.009 60.000 0.00 0.00 0.00 4.44
640 646 0.733223 GGCGACTCTTCTGAACCGTC 60.733 60.000 0.00 4.91 0.00 4.79
641 647 0.241481 GCGACTCTTCTGAACCGTCT 59.759 55.000 10.66 0.00 0.00 4.18
642 648 1.467734 GCGACTCTTCTGAACCGTCTA 59.532 52.381 10.66 0.00 0.00 2.59
646 652 4.794246 CGACTCTTCTGAACCGTCTATTTC 59.206 45.833 10.66 0.00 0.00 2.17
647 653 4.734917 ACTCTTCTGAACCGTCTATTTCG 58.265 43.478 0.00 0.00 0.00 3.46
659 665 4.970003 CCGTCTATTTCGATCAAAATTGCC 59.030 41.667 0.00 0.00 31.50 4.52
660 666 4.666176 CGTCTATTTCGATCAAAATTGCCG 59.334 41.667 0.00 0.00 31.50 5.69
666 672 2.554462 TCGATCAAAATTGCCGAACCAA 59.446 40.909 7.60 0.00 32.93 3.67
679 685 3.243068 GCCGAACCAATGGTCATTATGTC 60.243 47.826 4.95 0.00 33.12 3.06
684 690 4.389374 ACCAATGGTCATTATGTCGATCC 58.611 43.478 0.00 0.00 0.00 3.36
695 701 1.805945 GTCGATCCGGCCGATATGC 60.806 63.158 30.73 10.06 38.38 3.14
703 709 1.293498 GGCCGATATGCCGAGTCAT 59.707 57.895 0.00 0.00 42.54 3.06
704 710 0.320771 GGCCGATATGCCGAGTCATT 60.321 55.000 0.00 0.00 42.54 2.57
705 711 1.512926 GCCGATATGCCGAGTCATTT 58.487 50.000 0.00 0.00 0.00 2.32
708 714 3.254060 CCGATATGCCGAGTCATTTAGG 58.746 50.000 0.00 0.00 0.00 2.69
719 725 1.737793 GTCATTTAGGGTTGCACCGAG 59.262 52.381 0.00 0.00 39.83 4.63
720 726 0.451783 CATTTAGGGTTGCACCGAGC 59.548 55.000 0.00 0.00 39.83 5.03
731 737 4.702081 ACCGAGCGAGTGTGCGTC 62.702 66.667 0.00 0.00 40.67 5.19
738 744 3.764049 GAGTGTGCGTCGCCGTTC 61.764 66.667 15.88 3.64 36.15 3.95
739 745 4.578898 AGTGTGCGTCGCCGTTCA 62.579 61.111 15.88 6.11 36.15 3.18
740 746 4.349871 GTGTGCGTCGCCGTTCAC 62.350 66.667 15.88 14.12 36.15 3.18
750 756 2.809601 CCGTTCACCCGCTCGAAG 60.810 66.667 0.00 0.00 0.00 3.79
751 757 2.809601 CGTTCACCCGCTCGAAGG 60.810 66.667 0.00 0.00 0.00 3.46
752 758 2.342648 GTTCACCCGCTCGAAGGT 59.657 61.111 5.94 1.15 36.58 3.50
753 759 1.301479 GTTCACCCGCTCGAAGGTT 60.301 57.895 5.94 0.00 32.72 3.50
754 760 1.301401 TTCACCCGCTCGAAGGTTG 60.301 57.895 5.94 2.37 32.72 3.77
755 761 2.725203 TTCACCCGCTCGAAGGTTGG 62.725 60.000 4.69 0.00 32.72 3.77
756 762 4.699522 ACCCGCTCGAAGGTTGGC 62.700 66.667 5.94 0.00 29.94 4.52
759 765 3.479269 CGCTCGAAGGTTGGCGTC 61.479 66.667 6.34 0.00 42.23 5.19
760 766 3.479269 GCTCGAAGGTTGGCGTCG 61.479 66.667 0.00 0.00 0.00 5.12
761 767 2.257371 CTCGAAGGTTGGCGTCGA 59.743 61.111 0.00 0.00 0.00 4.20
762 768 2.049802 TCGAAGGTTGGCGTCGAC 60.050 61.111 5.18 5.18 0.00 4.20
763 769 2.049433 CGAAGGTTGGCGTCGACT 60.049 61.111 14.70 0.00 0.00 4.18
764 770 1.663702 CGAAGGTTGGCGTCGACTT 60.664 57.895 14.70 0.00 0.00 3.01
765 771 0.387622 CGAAGGTTGGCGTCGACTTA 60.388 55.000 14.70 0.00 0.00 2.24
766 772 1.787012 GAAGGTTGGCGTCGACTTAA 58.213 50.000 14.70 3.01 0.00 1.85
767 773 2.344025 GAAGGTTGGCGTCGACTTAAT 58.656 47.619 14.70 0.00 0.00 1.40
768 774 3.514645 GAAGGTTGGCGTCGACTTAATA 58.485 45.455 14.70 0.00 0.00 0.98
769 775 3.814005 AGGTTGGCGTCGACTTAATAT 57.186 42.857 14.70 0.00 0.00 1.28
770 776 4.924305 AGGTTGGCGTCGACTTAATATA 57.076 40.909 14.70 0.00 0.00 0.86
771 777 5.266733 AGGTTGGCGTCGACTTAATATAA 57.733 39.130 14.70 0.00 0.00 0.98
772 778 5.663456 AGGTTGGCGTCGACTTAATATAAA 58.337 37.500 14.70 0.00 0.00 1.40
773 779 6.108015 AGGTTGGCGTCGACTTAATATAAAA 58.892 36.000 14.70 0.00 0.00 1.52
774 780 6.594937 AGGTTGGCGTCGACTTAATATAAAAA 59.405 34.615 14.70 0.00 0.00 1.94
775 781 6.903479 GGTTGGCGTCGACTTAATATAAAAAG 59.097 38.462 14.70 0.00 0.00 2.27
776 782 6.039781 TGGCGTCGACTTAATATAAAAAGC 57.960 37.500 14.70 4.37 0.00 3.51
777 783 5.813672 TGGCGTCGACTTAATATAAAAAGCT 59.186 36.000 14.70 0.00 0.00 3.74
778 784 6.979817 TGGCGTCGACTTAATATAAAAAGCTA 59.020 34.615 14.70 0.00 0.00 3.32
779 785 7.492020 TGGCGTCGACTTAATATAAAAAGCTAA 59.508 33.333 14.70 0.00 0.00 3.09
780 786 8.493547 GGCGTCGACTTAATATAAAAAGCTAAT 58.506 33.333 14.70 0.00 0.00 1.73
781 787 9.513554 GCGTCGACTTAATATAAAAAGCTAATC 57.486 33.333 14.70 0.00 0.00 1.75
931 939 0.035820 GTGGAGTTTACCGCCATCCA 60.036 55.000 0.00 0.00 37.71 3.41
932 940 0.916086 TGGAGTTTACCGCCATCCAT 59.084 50.000 0.00 0.00 35.16 3.41
933 941 1.134220 TGGAGTTTACCGCCATCCATC 60.134 52.381 0.00 0.00 35.16 3.51
934 942 1.217882 GAGTTTACCGCCATCCATCG 58.782 55.000 0.00 0.00 0.00 3.84
976 985 1.243902 TGGCCGTTCTTGTCATTTCC 58.756 50.000 0.00 0.00 0.00 3.13
999 1012 2.285743 AGGCTCAACCCCTCCTCC 60.286 66.667 0.00 0.00 40.58 4.30
1056 1074 2.546795 CGGAGAGAGAGAGAGAGAGAGC 60.547 59.091 0.00 0.00 0.00 4.09
1066 1091 1.152963 AGAGAGAGCGAGAGGAGGC 60.153 63.158 0.00 0.00 0.00 4.70
1484 1575 0.605589 AGCGCAAGAAAGGTACCACC 60.606 55.000 15.94 2.21 43.02 4.61
1523 1620 2.263077 CTCGTTTGCTCGTATCTTGCT 58.737 47.619 0.00 0.00 0.00 3.91
1535 1632 7.093992 GCTCGTATCTTGCTTATTATCTTCCT 58.906 38.462 0.00 0.00 0.00 3.36
1540 1637 8.994170 GTATCTTGCTTATTATCTTCCTGTTCC 58.006 37.037 0.00 0.00 0.00 3.62
1562 1680 3.025262 ACGGTAGAACATTCCCTCTCTC 58.975 50.000 0.00 0.00 0.00 3.20
1582 1700 0.317938 CTCCTCGGCGAATTACCTCG 60.318 60.000 12.13 0.00 41.84 4.63
1583 1701 1.033746 TCCTCGGCGAATTACCTCGT 61.034 55.000 12.13 0.00 40.99 4.18
1791 1922 4.018779 TCTTGTCGTCTCCCCCAATTATTT 60.019 41.667 0.00 0.00 0.00 1.40
1883 2026 3.466836 TCTTGTGCACGAGAGAAAACAT 58.533 40.909 29.38 0.00 32.77 2.71
1901 2044 9.418045 AGAAAACATAATTTTGTGGGTTAATCG 57.582 29.630 2.10 0.00 0.00 3.34
1902 2045 7.589574 AAACATAATTTTGTGGGTTAATCGC 57.410 32.000 2.10 0.00 0.00 4.58
1903 2046 6.274157 ACATAATTTTGTGGGTTAATCGCA 57.726 33.333 0.33 0.00 36.65 5.10
1904 2047 6.872920 ACATAATTTTGTGGGTTAATCGCAT 58.127 32.000 0.33 0.00 40.92 4.73
1905 2048 8.001881 ACATAATTTTGTGGGTTAATCGCATA 57.998 30.769 0.33 0.00 40.92 3.14
1906 2049 8.134895 ACATAATTTTGTGGGTTAATCGCATAG 58.865 33.333 0.33 0.00 40.92 2.23
1907 2050 6.524101 AATTTTGTGGGTTAATCGCATAGT 57.476 33.333 0.00 0.00 40.92 2.12
1908 2051 5.968528 TTTTGTGGGTTAATCGCATAGTT 57.031 34.783 0.00 0.00 40.92 2.24
1909 2052 5.554822 TTTGTGGGTTAATCGCATAGTTC 57.445 39.130 0.00 0.00 40.92 3.01
1910 2053 4.209307 TGTGGGTTAATCGCATAGTTCA 57.791 40.909 0.00 0.00 40.92 3.18
2031 2191 0.603065 GTGCCAAGTCCCAATTCCAC 59.397 55.000 0.00 0.00 0.00 4.02
2161 2321 2.093890 TGCCTGCTGATACCATTGTTG 58.906 47.619 0.00 0.00 0.00 3.33
2247 2407 8.964476 TCCATATCTTTTCTCACCTGATTAAC 57.036 34.615 0.00 0.00 0.00 2.01
2251 2411 9.771534 ATATCTTTTCTCACCTGATTAACTAGC 57.228 33.333 0.00 0.00 0.00 3.42
2432 2592 3.260884 TGGTTTGACCAGTCCTAGATGTC 59.739 47.826 0.00 0.00 44.79 3.06
2456 2616 8.562892 GTCTGCAGTGATATGCTATTTTATTGT 58.437 33.333 14.67 0.00 46.63 2.71
2594 2754 4.077822 AGATGTCAGCTTTCCTTTTCCTG 58.922 43.478 0.00 0.00 0.00 3.86
2616 2776 6.531240 CCTGTTGTGATATTGTATTTTGGTGC 59.469 38.462 0.00 0.00 0.00 5.01
2647 2807 6.258230 TCTGTGCTAATGGTTCTGAAATTG 57.742 37.500 0.00 0.00 0.00 2.32
2649 2809 6.489700 TCTGTGCTAATGGTTCTGAAATTGAA 59.510 34.615 0.00 0.00 0.00 2.69
2672 2832 6.875948 ATGAAATATGCCGCTACAAACATA 57.124 33.333 0.00 0.00 0.00 2.29
2754 2927 1.279496 AGTGCCTACCTCTTGCATGA 58.721 50.000 0.00 1.92 37.34 3.07
2756 2929 0.253044 TGCCTACCTCTTGCATGACC 59.747 55.000 0.00 0.00 0.00 4.02
2760 2933 2.092753 CCTACCTCTTGCATGACCACAT 60.093 50.000 0.00 0.00 37.19 3.21
2777 2950 4.082625 ACCACATCATGTAATTGTGCTGTG 60.083 41.667 13.06 13.06 39.48 3.66
2793 2966 2.481952 GCTGTGCTGTAGAACTTTCCAG 59.518 50.000 0.00 0.00 0.00 3.86
2836 3009 3.256704 ACAAGGGAGATTTAGTGGGACA 58.743 45.455 0.00 0.00 0.00 4.02
2921 3177 3.564225 GGTTCTTTCGGTCTGTTTCACAT 59.436 43.478 0.00 0.00 0.00 3.21
2922 3178 4.036380 GGTTCTTTCGGTCTGTTTCACATT 59.964 41.667 0.00 0.00 0.00 2.71
2923 3179 5.449999 GGTTCTTTCGGTCTGTTTCACATTT 60.450 40.000 0.00 0.00 0.00 2.32
2924 3180 5.828299 TCTTTCGGTCTGTTTCACATTTT 57.172 34.783 0.00 0.00 0.00 1.82
2925 3181 5.577835 TCTTTCGGTCTGTTTCACATTTTG 58.422 37.500 0.00 0.00 0.00 2.44
2926 3182 3.347958 TCGGTCTGTTTCACATTTTGC 57.652 42.857 0.00 0.00 0.00 3.68
2954 3210 0.673437 GTTGTGGTGGTGTGGAATGG 59.327 55.000 0.00 0.00 0.00 3.16
3082 3338 9.604626 GTTTATATCAAGTTCAGATAGCAATGC 57.395 33.333 0.00 0.00 32.00 3.56
3118 3375 4.009675 TGAAATGTACATGGGCAAGTCTC 58.990 43.478 9.63 0.00 0.00 3.36
3123 3380 1.366319 ACATGGGCAAGTCTCCTTCT 58.634 50.000 0.00 0.00 0.00 2.85
3450 3707 7.573710 TGCCTTCTCCACATATGTTAAACTAT 58.426 34.615 5.37 0.00 0.00 2.12
3451 3708 7.498900 TGCCTTCTCCACATATGTTAAACTATG 59.501 37.037 5.37 4.69 0.00 2.23
3532 3789 1.727335 GGAAGAGTTTACGCTCTGCAC 59.273 52.381 3.78 0.00 44.34 4.57
3581 3838 7.803189 TCAAATAAACTTTCGCTGTTTCATCTC 59.197 33.333 0.00 0.00 38.41 2.75
3845 4102 2.185387 GTCCTAAAGCCCACTCCTGTA 58.815 52.381 0.00 0.00 0.00 2.74
4060 4317 3.508762 CAATCCATGCAGTTTGAAGAGC 58.491 45.455 0.00 0.00 0.00 4.09
4283 4540 6.607004 ACTCACACTATTGCTACCTTTACT 57.393 37.500 0.00 0.00 0.00 2.24
4296 4553 7.446769 TGCTACCTTTACTGATACAACTTCAA 58.553 34.615 0.00 0.00 0.00 2.69
4481 4740 7.100458 AGAATGATTTATGTAGGTTGTTGGC 57.900 36.000 0.00 0.00 0.00 4.52
4516 4779 6.585695 TGTAGACTGTTAAATTCCTCGACT 57.414 37.500 0.00 0.00 0.00 4.18
4517 4780 6.989659 TGTAGACTGTTAAATTCCTCGACTT 58.010 36.000 0.00 0.00 0.00 3.01
4521 4784 7.639945 AGACTGTTAAATTCCTCGACTTTTTG 58.360 34.615 0.00 0.00 0.00 2.44
4555 4818 8.283699 TGGGTTGTTGGTATATTAGCTTTTAC 57.716 34.615 0.00 0.00 0.00 2.01
4556 4819 8.110908 TGGGTTGTTGGTATATTAGCTTTTACT 58.889 33.333 0.00 0.00 0.00 2.24
4557 4820 8.618677 GGGTTGTTGGTATATTAGCTTTTACTC 58.381 37.037 0.00 0.00 0.00 2.59
4558 4821 8.618677 GGTTGTTGGTATATTAGCTTTTACTCC 58.381 37.037 0.00 0.00 0.00 3.85
4559 4822 8.618677 GTTGTTGGTATATTAGCTTTTACTCCC 58.381 37.037 0.00 0.00 0.00 4.30
4560 4823 8.097791 TGTTGGTATATTAGCTTTTACTCCCT 57.902 34.615 0.00 0.00 0.00 4.20
4561 4824 8.208903 TGTTGGTATATTAGCTTTTACTCCCTC 58.791 37.037 0.00 0.00 0.00 4.30
4562 4825 7.312415 TGGTATATTAGCTTTTACTCCCTCC 57.688 40.000 0.00 0.00 0.00 4.30
4563 4826 6.014840 TGGTATATTAGCTTTTACTCCCTCCG 60.015 42.308 0.00 0.00 0.00 4.63
4564 4827 6.014755 GGTATATTAGCTTTTACTCCCTCCGT 60.015 42.308 0.00 0.00 0.00 4.69
4565 4828 7.177392 GGTATATTAGCTTTTACTCCCTCCGTA 59.823 40.741 0.00 0.00 0.00 4.02
4566 4829 5.945144 ATTAGCTTTTACTCCCTCCGTAA 57.055 39.130 0.00 0.00 0.00 3.18
4567 4830 5.743636 TTAGCTTTTACTCCCTCCGTAAA 57.256 39.130 0.00 0.00 35.65 2.01
4568 4831 3.935315 AGCTTTTACTCCCTCCGTAAAC 58.065 45.455 0.00 0.00 36.78 2.01
4569 4832 3.581770 AGCTTTTACTCCCTCCGTAAACT 59.418 43.478 0.00 0.00 36.78 2.66
4570 4833 4.774200 AGCTTTTACTCCCTCCGTAAACTA 59.226 41.667 0.00 0.00 36.78 2.24
4571 4834 5.246883 AGCTTTTACTCCCTCCGTAAACTAA 59.753 40.000 0.00 0.00 36.78 2.24
4572 4835 6.070366 AGCTTTTACTCCCTCCGTAAACTAAT 60.070 38.462 0.00 0.00 36.78 1.73
4573 4836 7.124750 AGCTTTTACTCCCTCCGTAAACTAATA 59.875 37.037 0.00 0.00 36.78 0.98
4574 4837 7.930325 GCTTTTACTCCCTCCGTAAACTAATAT 59.070 37.037 0.00 0.00 36.78 1.28
4578 4841 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
4579 4842 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4580 4843 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4581 4844 6.210185 TCCCTCCGTAAACTAATATAAGAGCC 59.790 42.308 0.00 0.00 0.00 4.70
4582 4845 6.210984 CCCTCCGTAAACTAATATAAGAGCCT 59.789 42.308 0.00 0.00 0.00 4.58
4583 4846 7.256225 CCCTCCGTAAACTAATATAAGAGCCTT 60.256 40.741 0.00 0.00 0.00 4.35
4584 4847 8.148999 CCTCCGTAAACTAATATAAGAGCCTTT 58.851 37.037 0.00 0.00 0.00 3.11
4632 4895 8.571461 AACGCTCTTATATTAGTTTACGAAGG 57.429 34.615 0.00 0.00 0.00 3.46
4633 4896 7.144000 ACGCTCTTATATTAGTTTACGAAGGG 58.856 38.462 0.00 0.00 0.00 3.95
4634 4897 7.013655 ACGCTCTTATATTAGTTTACGAAGGGA 59.986 37.037 0.00 0.00 0.00 4.20
4635 4898 7.537991 CGCTCTTATATTAGTTTACGAAGGGAG 59.462 40.741 0.00 0.00 0.00 4.30
4636 4899 8.358895 GCTCTTATATTAGTTTACGAAGGGAGT 58.641 37.037 0.00 0.00 0.00 3.85
4668 4932 6.350629 AGGGATGGAGATTTTGAAGTTTTG 57.649 37.500 0.00 0.00 0.00 2.44
4714 4978 7.325097 CGTCTTTGTTTGTGTCTTTGTAAACTT 59.675 33.333 0.00 0.00 34.88 2.66
4778 5042 6.861065 TTCTTTGCTTGTAATTTCGTCTCT 57.139 33.333 0.00 0.00 0.00 3.10
4779 5043 6.467723 TCTTTGCTTGTAATTTCGTCTCTC 57.532 37.500 0.00 0.00 0.00 3.20
4780 5044 5.408604 TCTTTGCTTGTAATTTCGTCTCTCC 59.591 40.000 0.00 0.00 0.00 3.71
4781 5045 4.537135 TGCTTGTAATTTCGTCTCTCCT 57.463 40.909 0.00 0.00 0.00 3.69
4783 5047 3.866327 GCTTGTAATTTCGTCTCTCCTCC 59.134 47.826 0.00 0.00 0.00 4.30
4784 5048 4.434520 CTTGTAATTTCGTCTCTCCTCCC 58.565 47.826 0.00 0.00 0.00 4.30
4785 5049 2.764572 TGTAATTTCGTCTCTCCTCCCC 59.235 50.000 0.00 0.00 0.00 4.81
4786 5050 1.205055 AATTTCGTCTCTCCTCCCCC 58.795 55.000 0.00 0.00 0.00 5.40
4805 5069 3.325135 CCCCCATATGTAACTCTGTCCTC 59.675 52.174 1.24 0.00 0.00 3.71
4807 5071 4.594920 CCCCATATGTAACTCTGTCCTCAT 59.405 45.833 1.24 0.00 0.00 2.90
4808 5072 5.512060 CCCCATATGTAACTCTGTCCTCATG 60.512 48.000 1.24 0.00 0.00 3.07
4810 5074 6.267699 CCCATATGTAACTCTGTCCTCATGTA 59.732 42.308 1.24 0.00 0.00 2.29
4811 5075 7.202001 CCCATATGTAACTCTGTCCTCATGTAA 60.202 40.741 1.24 0.00 0.00 2.41
4812 5076 7.653713 CCATATGTAACTCTGTCCTCATGTAAC 59.346 40.741 1.24 0.00 0.00 2.50
4813 5077 5.401531 TGTAACTCTGTCCTCATGTAACC 57.598 43.478 0.00 0.00 0.00 2.85
4814 5078 3.594603 AACTCTGTCCTCATGTAACCG 57.405 47.619 0.00 0.00 0.00 4.44
4815 5079 1.204941 ACTCTGTCCTCATGTAACCGC 59.795 52.381 0.00 0.00 0.00 5.68
4816 5080 1.478510 CTCTGTCCTCATGTAACCGCT 59.521 52.381 0.00 0.00 0.00 5.52
4817 5081 1.476891 TCTGTCCTCATGTAACCGCTC 59.523 52.381 0.00 0.00 0.00 5.03
4820 5084 1.112113 TCCTCATGTAACCGCTCCTC 58.888 55.000 0.00 0.00 0.00 3.71
4823 5087 2.158900 CCTCATGTAACCGCTCCTCAAT 60.159 50.000 0.00 0.00 0.00 2.57
4824 5088 3.535561 CTCATGTAACCGCTCCTCAATT 58.464 45.455 0.00 0.00 0.00 2.32
4825 5089 3.270027 TCATGTAACCGCTCCTCAATTG 58.730 45.455 0.00 0.00 0.00 2.32
4826 5090 2.107950 TGTAACCGCTCCTCAATTGG 57.892 50.000 5.42 0.00 0.00 3.16
4827 5091 1.349688 TGTAACCGCTCCTCAATTGGT 59.650 47.619 5.42 0.00 33.45 3.67
4829 5093 2.871096 AACCGCTCCTCAATTGGTAA 57.129 45.000 5.42 0.00 31.36 2.85
4830 5094 3.366052 AACCGCTCCTCAATTGGTAAT 57.634 42.857 5.42 0.00 31.36 1.89
4831 5095 4.497291 AACCGCTCCTCAATTGGTAATA 57.503 40.909 5.42 0.00 31.36 0.98
4832 5096 4.497291 ACCGCTCCTCAATTGGTAATAA 57.503 40.909 5.42 0.00 0.00 1.40
4833 5097 4.850680 ACCGCTCCTCAATTGGTAATAAA 58.149 39.130 5.42 0.00 0.00 1.40
4834 5098 5.258051 ACCGCTCCTCAATTGGTAATAAAA 58.742 37.500 5.42 0.00 0.00 1.52
4835 5099 5.357032 ACCGCTCCTCAATTGGTAATAAAAG 59.643 40.000 5.42 0.00 0.00 2.27
4836 5100 5.357032 CCGCTCCTCAATTGGTAATAAAAGT 59.643 40.000 5.42 0.00 0.00 2.66
4837 5101 6.127730 CCGCTCCTCAATTGGTAATAAAAGTT 60.128 38.462 5.42 0.00 0.00 2.66
4841 5105 8.348285 TCCTCAATTGGTAATAAAAGTTCAGG 57.652 34.615 5.42 0.00 0.00 3.86
4842 5106 7.947890 TCCTCAATTGGTAATAAAAGTTCAGGT 59.052 33.333 5.42 0.00 0.00 4.00
4843 5107 9.238368 CCTCAATTGGTAATAAAAGTTCAGGTA 57.762 33.333 5.42 0.00 0.00 3.08
4845 5109 9.238368 TCAATTGGTAATAAAAGTTCAGGTAGG 57.762 33.333 5.42 0.00 0.00 3.18
4847 5111 5.180271 TGGTAATAAAAGTTCAGGTAGGCG 58.820 41.667 0.00 0.00 0.00 5.52
4849 5113 6.070881 TGGTAATAAAAGTTCAGGTAGGCGTA 60.071 38.462 0.00 0.00 0.00 4.42
4850 5114 6.818142 GGTAATAAAAGTTCAGGTAGGCGTAA 59.182 38.462 0.00 0.00 0.00 3.18
4863 5127 3.557824 CGTAAGCCCACCGTTGAC 58.442 61.111 0.00 0.00 0.00 3.18
4864 5128 2.377310 CGTAAGCCCACCGTTGACG 61.377 63.158 0.00 0.00 39.44 4.35
4865 5129 2.357760 TAAGCCCACCGTTGACGC 60.358 61.111 0.00 0.00 38.18 5.19
4936 5962 4.300189 AGTCGCTGTTTTGTGCAAATTA 57.700 36.364 0.00 0.00 0.00 1.40
4978 6004 6.092748 GGTTCTGTAAAATAGTGGCACAATG 58.907 40.000 21.41 0.00 44.16 2.82
5021 6047 7.873719 TTACTCAGATTTTTGTTGTTCCTGA 57.126 32.000 0.00 0.00 0.00 3.86
5088 6114 0.307760 CCACAAGAACTCGCACAACC 59.692 55.000 0.00 0.00 0.00 3.77
5096 6122 2.450609 ACTCGCACAACCGTAAATCT 57.549 45.000 0.00 0.00 0.00 2.40
5104 6130 0.037590 AACCGTAAATCTGGCTGCCA 59.962 50.000 21.96 21.96 0.00 4.92
5132 6158 3.383620 TGGCAAGCCAACATTAACAAG 57.616 42.857 12.11 0.00 44.12 3.16
5133 6159 2.697751 TGGCAAGCCAACATTAACAAGT 59.302 40.909 12.11 0.00 44.12 3.16
5134 6160 3.059166 GGCAAGCCAACATTAACAAGTG 58.941 45.455 6.14 0.00 35.81 3.16
5135 6161 3.492482 GGCAAGCCAACATTAACAAGTGT 60.492 43.478 6.14 0.00 35.81 3.55
5136 6162 3.490526 GCAAGCCAACATTAACAAGTGTG 59.509 43.478 0.00 0.00 0.00 3.82
5137 6163 4.736168 GCAAGCCAACATTAACAAGTGTGA 60.736 41.667 0.00 0.00 0.00 3.58
5138 6164 5.347342 CAAGCCAACATTAACAAGTGTGAA 58.653 37.500 0.00 0.00 0.00 3.18
5139 6165 5.186996 AGCCAACATTAACAAGTGTGAAG 57.813 39.130 0.00 0.00 0.00 3.02
5140 6166 4.037923 AGCCAACATTAACAAGTGTGAAGG 59.962 41.667 0.00 0.00 0.00 3.46
5141 6167 4.298332 CCAACATTAACAAGTGTGAAGGC 58.702 43.478 0.00 0.00 0.00 4.35
5142 6168 4.202101 CCAACATTAACAAGTGTGAAGGCA 60.202 41.667 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.909376 TCTGACTTTACGCATCTCGC 58.091 50.000 0.00 0.00 43.23 5.03
46 47 3.057739 CGTGTGACGATTCTGACTTTACG 59.942 47.826 0.00 0.00 46.05 3.18
48 49 3.978855 CACGTGTGACGATTCTGACTTTA 59.021 43.478 7.58 0.00 46.05 1.85
54 55 0.667487 AGCCACGTGTGACGATTCTG 60.667 55.000 15.65 0.00 46.05 3.02
66 67 2.590575 CACCGTTGGAAGCCACGT 60.591 61.111 0.00 0.00 30.78 4.49
80 81 2.094545 GGATCTCAAAACACATGCCACC 60.095 50.000 0.00 0.00 0.00 4.61
81 82 2.094545 GGGATCTCAAAACACATGCCAC 60.095 50.000 0.00 0.00 0.00 5.01
84 85 3.940209 TTGGGATCTCAAAACACATGC 57.060 42.857 5.27 0.00 0.00 4.06
97 98 0.107214 TGAGTGGGCGAATTGGGATC 60.107 55.000 0.00 0.00 0.00 3.36
118 119 2.364560 AGGATCCCACGCTCCTCA 59.635 61.111 8.55 0.00 37.30 3.86
205 209 2.356818 GAAGCGGATCCTGGTCGAGG 62.357 65.000 10.75 0.00 44.45 4.63
212 216 0.758685 AGGAGGAGAAGCGGATCCTG 60.759 60.000 10.75 4.67 46.12 3.86
220 224 3.401182 CAGATTGCATAGGAGGAGAAGC 58.599 50.000 0.00 0.00 0.00 3.86
244 248 1.686325 GCTTCCTCTATGGCCGGACA 61.686 60.000 15.46 15.46 35.26 4.02
253 257 1.045350 TCGCCTGCAGCTTCCTCTAT 61.045 55.000 8.66 0.00 40.39 1.98
264 268 2.805546 GTATCCTCGTCGCCTGCA 59.194 61.111 0.00 0.00 0.00 4.41
266 270 1.280142 CTCGTATCCTCGTCGCCTG 59.720 63.158 0.00 0.00 0.00 4.85
267 271 2.544698 GCTCGTATCCTCGTCGCCT 61.545 63.158 0.00 0.00 0.00 5.52
278 282 4.676459 CGCCATGAATGATCTAGCTCGTAT 60.676 45.833 0.00 0.00 0.00 3.06
303 307 3.016736 GGCTGCAGCTATAAAAAGGTCA 58.983 45.455 35.82 0.00 41.70 4.02
326 330 3.752339 CTTTTCCCTGCCGCCTGC 61.752 66.667 0.00 0.00 41.77 4.85
347 351 4.853196 CGACAATTACAGCCATGTTTTCAG 59.147 41.667 0.00 0.00 41.01 3.02
360 364 1.876799 CAACTGCCCACGACAATTACA 59.123 47.619 0.00 0.00 0.00 2.41
361 365 1.199097 CCAACTGCCCACGACAATTAC 59.801 52.381 0.00 0.00 0.00 1.89
362 366 1.529226 CCAACTGCCCACGACAATTA 58.471 50.000 0.00 0.00 0.00 1.40
368 372 2.672651 CATGCCAACTGCCCACGA 60.673 61.111 0.00 0.00 40.16 4.35
388 392 0.179108 GAGCTAAAGATGACGGCCGT 60.179 55.000 34.89 34.89 0.00 5.68
399 403 3.122297 CTCATCTGGAAGCGAGCTAAAG 58.878 50.000 0.00 0.00 0.00 1.85
400 404 2.760650 TCTCATCTGGAAGCGAGCTAAA 59.239 45.455 0.00 0.00 34.42 1.85
408 413 0.942962 CGCCAATCTCATCTGGAAGC 59.057 55.000 0.00 0.00 34.35 3.86
416 421 1.496060 TGGGTAGACGCCAATCTCAT 58.504 50.000 0.00 0.00 0.00 2.90
418 423 1.270358 GGATGGGTAGACGCCAATCTC 60.270 57.143 6.48 0.00 38.68 2.75
420 425 0.600255 CGGATGGGTAGACGCCAATC 60.600 60.000 0.00 0.00 38.07 2.67
432 437 3.357079 GCTAATGGCGCGGATGGG 61.357 66.667 8.83 0.00 0.00 4.00
442 447 4.277672 CCAATCTTCCATCACTGCTAATGG 59.722 45.833 0.00 0.00 43.22 3.16
451 456 2.381911 ACATGGCCAATCTTCCATCAC 58.618 47.619 10.96 0.00 40.88 3.06
455 460 1.557371 TCGTACATGGCCAATCTTCCA 59.443 47.619 10.96 0.00 36.70 3.53
461 466 1.768275 TCATCCTCGTACATGGCCAAT 59.232 47.619 10.96 3.20 0.00 3.16
473 478 1.418334 ATCACCCCTTCTCATCCTCG 58.582 55.000 0.00 0.00 0.00 4.63
504 509 0.924090 CTCTATTGTCAACCGCTCGC 59.076 55.000 0.00 0.00 0.00 5.03
521 526 1.796617 GCGTTGATTTGGAGCATGCTC 60.797 52.381 34.99 34.99 42.04 4.26
525 530 1.098050 GAGGCGTTGATTTGGAGCAT 58.902 50.000 0.00 0.00 0.00 3.79
559 565 2.599645 ATACAGCCGGCAAGCCTCTG 62.600 60.000 31.54 18.75 38.98 3.35
562 568 1.000896 AAATACAGCCGGCAAGCCT 60.001 52.632 31.54 3.61 0.00 4.58
582 588 5.398169 TCATCATAATTTTGAAACGCGCTT 58.602 33.333 5.73 0.00 0.00 4.68
593 599 4.082125 GCCCTCCCGATCATCATAATTTT 58.918 43.478 0.00 0.00 0.00 1.82
602 608 2.919856 CTCCGCCCTCCCGATCAT 60.920 66.667 0.00 0.00 0.00 2.45
618 624 0.318762 GGTTCAGAAGAGTCGCCACT 59.681 55.000 0.00 0.00 34.57 4.00
634 640 6.027749 GCAATTTTGATCGAAATAGACGGTT 58.972 36.000 19.20 2.46 0.00 4.44
638 644 5.806286 TCGGCAATTTTGATCGAAATAGAC 58.194 37.500 19.20 12.15 34.38 2.59
640 646 5.455525 GGTTCGGCAATTTTGATCGAAATAG 59.544 40.000 19.20 12.00 42.30 1.73
641 647 5.106118 TGGTTCGGCAATTTTGATCGAAATA 60.106 36.000 19.20 3.02 42.30 1.40
642 648 4.173256 GGTTCGGCAATTTTGATCGAAAT 58.827 39.130 14.21 14.21 42.30 2.17
646 652 2.627863 TGGTTCGGCAATTTTGATCG 57.372 45.000 0.00 0.00 0.00 3.69
647 653 3.618150 CCATTGGTTCGGCAATTTTGATC 59.382 43.478 0.00 0.00 0.00 2.92
659 665 3.868661 TCGACATAATGACCATTGGTTCG 59.131 43.478 10.29 12.96 35.25 3.95
660 666 5.049405 GGATCGACATAATGACCATTGGTTC 60.049 44.000 10.29 4.21 35.25 3.62
666 672 2.612972 GCCGGATCGACATAATGACCAT 60.613 50.000 5.05 0.00 0.00 3.55
679 685 2.509336 GGCATATCGGCCGGATCG 60.509 66.667 27.83 13.19 45.40 3.69
695 701 1.737793 GTGCAACCCTAAATGACTCGG 59.262 52.381 0.00 0.00 0.00 4.63
733 739 2.809601 CTTCGAGCGGGTGAACGG 60.810 66.667 0.00 0.00 0.00 4.44
734 740 2.809601 CCTTCGAGCGGGTGAACG 60.810 66.667 0.00 0.00 0.00 3.95
735 741 1.301479 AACCTTCGAGCGGGTGAAC 60.301 57.895 7.41 0.00 35.81 3.18
736 742 1.301401 CAACCTTCGAGCGGGTGAA 60.301 57.895 13.88 0.00 41.89 3.18
737 743 2.342279 CAACCTTCGAGCGGGTGA 59.658 61.111 13.88 0.00 41.89 4.02
738 744 2.742372 CCAACCTTCGAGCGGGTG 60.742 66.667 12.53 12.53 38.99 4.61
739 745 4.699522 GCCAACCTTCGAGCGGGT 62.700 66.667 7.61 4.69 37.44 5.28
743 749 3.479269 CGACGCCAACCTTCGAGC 61.479 66.667 0.00 0.00 37.39 5.03
744 750 2.087009 GTCGACGCCAACCTTCGAG 61.087 63.158 0.00 0.00 43.61 4.04
745 751 2.049802 GTCGACGCCAACCTTCGA 60.050 61.111 0.00 0.00 41.23 3.71
746 752 0.387622 TAAGTCGACGCCAACCTTCG 60.388 55.000 10.46 0.00 36.63 3.79
747 753 1.787012 TTAAGTCGACGCCAACCTTC 58.213 50.000 10.46 0.00 0.00 3.46
748 754 2.467566 ATTAAGTCGACGCCAACCTT 57.532 45.000 10.46 0.00 0.00 3.50
749 755 3.814005 ATATTAAGTCGACGCCAACCT 57.186 42.857 10.46 0.00 0.00 3.50
750 756 5.971895 TTTATATTAAGTCGACGCCAACC 57.028 39.130 10.46 0.00 0.00 3.77
751 757 6.410048 GCTTTTTATATTAAGTCGACGCCAAC 59.590 38.462 10.46 0.00 0.00 3.77
752 758 6.314400 AGCTTTTTATATTAAGTCGACGCCAA 59.686 34.615 10.46 5.96 0.00 4.52
753 759 5.813672 AGCTTTTTATATTAAGTCGACGCCA 59.186 36.000 10.46 0.00 0.00 5.69
754 760 6.283161 AGCTTTTTATATTAAGTCGACGCC 57.717 37.500 10.46 0.00 0.00 5.68
755 761 9.513554 GATTAGCTTTTTATATTAAGTCGACGC 57.486 33.333 10.46 2.45 0.00 5.19
801 807 9.492973 AATCAGTGTGCATTTTAAGCTTTTTAT 57.507 25.926 3.20 0.00 0.00 1.40
802 808 8.763356 CAATCAGTGTGCATTTTAAGCTTTTTA 58.237 29.630 3.20 0.00 0.00 1.52
817 823 1.978782 GCTAAAACGCAATCAGTGTGC 59.021 47.619 0.00 0.00 40.86 4.57
818 824 3.266541 TGCTAAAACGCAATCAGTGTG 57.733 42.857 0.00 0.00 40.86 3.82
884 892 4.020617 CCACTCCGCCCTGCAGAA 62.021 66.667 17.39 0.00 0.00 3.02
931 939 6.170846 ACCTCCTTTTATTAACGGATCGAT 57.829 37.500 0.00 0.00 31.90 3.59
932 940 5.127519 TGACCTCCTTTTATTAACGGATCGA 59.872 40.000 0.00 0.00 31.90 3.59
933 941 5.353938 TGACCTCCTTTTATTAACGGATCG 58.646 41.667 0.00 0.00 31.90 3.69
934 942 6.204882 CCATGACCTCCTTTTATTAACGGATC 59.795 42.308 0.00 0.00 31.90 3.36
976 985 3.787001 GGGGTTGAGCCTCGGGAG 61.787 72.222 0.00 0.00 37.43 4.30
999 1012 9.541143 GTGGTGATATTTTTGGGTATTTATTGG 57.459 33.333 0.00 0.00 0.00 3.16
1056 1074 0.734253 CAGTTCGTTGCCTCCTCTCG 60.734 60.000 0.00 0.00 0.00 4.04
1066 1091 1.717728 GTGCGCGTTCAGTTCGTTG 60.718 57.895 8.43 0.00 0.00 4.10
1484 1575 3.212685 GAGGCATTGAGGGAAGATCTTG 58.787 50.000 14.00 0.00 0.00 3.02
1540 1637 2.761208 AGAGAGGGAATGTTCTACCGTG 59.239 50.000 0.00 0.00 0.00 4.94
1562 1680 0.032267 GAGGTAATTCGCCGAGGAGG 59.968 60.000 0.00 0.00 44.97 4.30
1582 1700 1.128692 CATTTTCCTCGGTCGCTCAAC 59.871 52.381 0.00 0.00 0.00 3.18
1583 1701 1.438651 CATTTTCCTCGGTCGCTCAA 58.561 50.000 0.00 0.00 0.00 3.02
1722 1847 9.455847 CTAGCTGCAGGTTTTATTTTATTCATC 57.544 33.333 25.47 0.00 0.00 2.92
1811 1948 9.565213 CAGAATTTGAAGGAAGCTAACTAAATG 57.435 33.333 0.00 0.00 0.00 2.32
1869 2009 6.582295 CCCACAAAATTATGTTTTCTCTCGTG 59.418 38.462 0.00 0.00 0.00 4.35
1883 2026 7.633193 ACTATGCGATTAACCCACAAAATTA 57.367 32.000 0.00 0.00 0.00 1.40
1900 2043 4.766404 AAAAAGAAGGGTGAACTATGCG 57.234 40.909 0.00 0.00 0.00 4.73
1901 2044 6.819397 ACTAAAAAGAAGGGTGAACTATGC 57.181 37.500 0.00 0.00 0.00 3.14
1902 2045 7.665974 AGGAACTAAAAAGAAGGGTGAACTATG 59.334 37.037 0.00 0.00 36.02 2.23
1903 2046 7.756614 AGGAACTAAAAAGAAGGGTGAACTAT 58.243 34.615 0.00 0.00 36.02 2.12
1904 2047 7.145474 AGGAACTAAAAAGAAGGGTGAACTA 57.855 36.000 0.00 0.00 36.02 2.24
1905 2048 6.014771 AGGAACTAAAAAGAAGGGTGAACT 57.985 37.500 0.00 0.00 36.02 3.01
1906 2049 5.049612 CGAGGAACTAAAAAGAAGGGTGAAC 60.050 44.000 0.00 0.00 41.55 3.18
1907 2050 5.061179 CGAGGAACTAAAAAGAAGGGTGAA 58.939 41.667 0.00 0.00 41.55 3.18
1908 2051 4.102054 ACGAGGAACTAAAAAGAAGGGTGA 59.898 41.667 0.00 0.00 41.55 4.02
1909 2052 4.386711 ACGAGGAACTAAAAAGAAGGGTG 58.613 43.478 0.00 0.00 41.55 4.61
1910 2053 4.701651 ACGAGGAACTAAAAAGAAGGGT 57.298 40.909 0.00 0.00 41.55 4.34
2031 2191 1.334869 AGCGCTTGTTGGTTTCTTCAG 59.665 47.619 2.64 0.00 0.00 3.02
2098 2258 6.662865 TGTGTTCAAATTATTGACACCCAT 57.337 33.333 13.19 0.00 45.01 4.00
2161 2321 3.188460 ACGGTTCATAAATATCGCATGGC 59.812 43.478 0.00 0.00 0.00 4.40
2456 2616 1.691976 CAGGGCGGGAGTACAATCATA 59.308 52.381 0.00 0.00 0.00 2.15
2594 2754 9.289303 CTTAGCACCAAAATACAATATCACAAC 57.711 33.333 0.00 0.00 0.00 3.32
2616 2776 6.312426 CAGAACCATTAGCACAGAAGACTTAG 59.688 42.308 0.00 0.00 0.00 2.18
2647 2807 5.577835 TGTTTGTAGCGGCATATTTCATTC 58.422 37.500 1.45 0.00 0.00 2.67
2649 2809 5.772825 ATGTTTGTAGCGGCATATTTCAT 57.227 34.783 1.45 0.00 0.00 2.57
2672 2832 6.547510 GGCACTCCATCATAAGTATTTTCCTT 59.452 38.462 0.00 0.00 0.00 3.36
2740 2913 2.768253 TGTGGTCATGCAAGAGGTAG 57.232 50.000 0.00 0.00 0.00 3.18
2760 2933 3.148412 ACAGCACAGCACAATTACATGA 58.852 40.909 0.00 0.00 0.00 3.07
2777 2950 5.470098 TGATTCAACTGGAAAGTTCTACAGC 59.530 40.000 0.00 0.00 39.39 4.40
2793 2966 8.578308 TTGTTTGAATTCATGAGTGATTCAAC 57.422 30.769 24.03 19.91 39.17 3.18
2836 3009 5.593095 TGTCACCTACTTAATCTGTATCGCT 59.407 40.000 0.00 0.00 0.00 4.93
2921 3177 2.028930 ACCACAACGTCCAAAAGCAAAA 60.029 40.909 0.00 0.00 0.00 2.44
2922 3178 1.546476 ACCACAACGTCCAAAAGCAAA 59.454 42.857 0.00 0.00 0.00 3.68
2923 3179 1.135257 CACCACAACGTCCAAAAGCAA 60.135 47.619 0.00 0.00 0.00 3.91
2924 3180 0.453793 CACCACAACGTCCAAAAGCA 59.546 50.000 0.00 0.00 0.00 3.91
2925 3181 0.248866 CCACCACAACGTCCAAAAGC 60.249 55.000 0.00 0.00 0.00 3.51
2926 3182 1.099689 ACCACCACAACGTCCAAAAG 58.900 50.000 0.00 0.00 0.00 2.27
2954 3210 0.725784 CGGTCACAAAGTTCATGCGC 60.726 55.000 0.00 0.00 0.00 6.09
3061 3317 6.585416 TCAGCATTGCTATCTGAACTTGATA 58.415 36.000 11.55 0.00 36.40 2.15
3118 3375 8.768955 GCACTGACAATAATAACATAGAGAAGG 58.231 37.037 0.00 0.00 0.00 3.46
3123 3380 7.275183 AGCTGCACTGACAATAATAACATAGA 58.725 34.615 1.02 0.00 0.00 1.98
3139 3396 3.311871 GTCTATGATTGGAAGCTGCACTG 59.688 47.826 1.02 0.00 0.00 3.66
3405 3662 6.183347 AGGCAGATAATCCCTGTTATTATGC 58.817 40.000 0.00 0.00 36.89 3.14
3450 3707 2.813754 GGAAAGCACAAGTATCAGCACA 59.186 45.455 0.00 0.00 0.00 4.57
3451 3708 3.077359 AGGAAAGCACAAGTATCAGCAC 58.923 45.455 0.00 0.00 0.00 4.40
3532 3789 5.505173 ACTTGTTGTTTCATCTTGAGTGG 57.495 39.130 0.00 0.00 0.00 4.00
3566 3823 1.019278 GCCCGAGATGAAACAGCGAA 61.019 55.000 0.00 0.00 0.00 4.70
3581 3838 2.815647 GCTTCCTTCTGTCGCCCG 60.816 66.667 0.00 0.00 0.00 6.13
3845 4102 6.106003 CGCCTTAATTGCCTCCTTTAAATTT 58.894 36.000 0.00 0.00 0.00 1.82
4060 4317 4.282881 GGAAGGCCCATTCCATGG 57.717 61.111 16.97 4.97 46.77 3.66
4283 4540 9.739276 AATCTCCAAAGTATTGAAGTTGTATCA 57.261 29.630 0.00 0.00 38.94 2.15
4296 4553 9.423061 GTTTGCATACAAAAATCTCCAAAGTAT 57.577 29.630 2.09 0.00 46.94 2.12
4512 4771 4.490743 ACCCAGTTTCAAACAAAAAGTCG 58.509 39.130 2.41 0.00 0.00 4.18
4516 4779 5.239525 CCAACAACCCAGTTTCAAACAAAAA 59.760 36.000 2.41 0.00 0.00 1.94
4517 4780 4.757149 CCAACAACCCAGTTTCAAACAAAA 59.243 37.500 2.41 0.00 0.00 2.44
4521 4784 3.603158 ACCAACAACCCAGTTTCAAAC 57.397 42.857 0.00 0.00 0.00 2.93
4555 4818 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
4556 4819 6.210185 GGCTCTTATATTAGTTTACGGAGGGA 59.790 42.308 0.00 0.00 0.00 4.20
4557 4820 6.210984 AGGCTCTTATATTAGTTTACGGAGGG 59.789 42.308 0.00 0.00 0.00 4.30
4558 4821 7.229581 AGGCTCTTATATTAGTTTACGGAGG 57.770 40.000 0.00 0.00 0.00 4.30
4606 4869 9.028185 CCTTCGTAAACTAATATAAGAGCGTTT 57.972 33.333 0.00 0.00 0.00 3.60
4607 4870 7.650903 CCCTTCGTAAACTAATATAAGAGCGTT 59.349 37.037 0.00 0.00 0.00 4.84
4608 4871 7.013655 TCCCTTCGTAAACTAATATAAGAGCGT 59.986 37.037 0.00 0.00 0.00 5.07
4609 4872 7.365741 TCCCTTCGTAAACTAATATAAGAGCG 58.634 38.462 0.00 0.00 0.00 5.03
4610 4873 8.358895 ACTCCCTTCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
4618 4881 8.761689 TGGTAATTACTCCCTTCGTAAACTAAT 58.238 33.333 15.05 0.00 31.36 1.73
4619 4882 8.133024 TGGTAATTACTCCCTTCGTAAACTAA 57.867 34.615 15.05 0.00 31.36 2.24
4620 4883 7.716799 TGGTAATTACTCCCTTCGTAAACTA 57.283 36.000 15.05 0.00 31.36 2.24
4621 4884 6.610075 TGGTAATTACTCCCTTCGTAAACT 57.390 37.500 15.05 0.00 31.36 2.66
4622 4885 6.314648 CCTTGGTAATTACTCCCTTCGTAAAC 59.685 42.308 15.05 0.00 31.36 2.01
4623 4886 6.408869 CCTTGGTAATTACTCCCTTCGTAAA 58.591 40.000 15.05 0.00 31.36 2.01
4624 4887 5.104817 CCCTTGGTAATTACTCCCTTCGTAA 60.105 44.000 15.05 0.00 0.00 3.18
4625 4888 4.406649 CCCTTGGTAATTACTCCCTTCGTA 59.593 45.833 15.05 0.00 0.00 3.43
4626 4889 3.199289 CCCTTGGTAATTACTCCCTTCGT 59.801 47.826 15.05 0.00 0.00 3.85
4627 4890 3.453353 TCCCTTGGTAATTACTCCCTTCG 59.547 47.826 15.05 0.00 0.00 3.79
4628 4891 5.377478 CATCCCTTGGTAATTACTCCCTTC 58.623 45.833 15.05 0.00 0.00 3.46
4629 4892 4.168088 CCATCCCTTGGTAATTACTCCCTT 59.832 45.833 15.05 0.00 40.99 3.95
4630 4893 3.722101 CCATCCCTTGGTAATTACTCCCT 59.278 47.826 15.05 0.00 40.99 4.20
4631 4894 3.720002 TCCATCCCTTGGTAATTACTCCC 59.280 47.826 15.05 0.00 46.52 4.30
4632 4895 4.658901 TCTCCATCCCTTGGTAATTACTCC 59.341 45.833 15.05 0.45 46.52 3.85
4633 4896 5.888982 TCTCCATCCCTTGGTAATTACTC 57.111 43.478 15.05 6.39 46.52 2.59
4634 4897 6.848562 AATCTCCATCCCTTGGTAATTACT 57.151 37.500 15.05 0.00 46.52 2.24
4635 4898 7.559897 TCAAAATCTCCATCCCTTGGTAATTAC 59.440 37.037 7.09 7.09 46.52 1.89
4636 4899 7.647827 TCAAAATCTCCATCCCTTGGTAATTA 58.352 34.615 0.00 0.00 46.52 1.40
4637 4900 6.502138 TCAAAATCTCCATCCCTTGGTAATT 58.498 36.000 0.00 0.00 46.52 1.40
4661 4925 5.793817 ACAGAAAAAGGAACAGCAAAACTT 58.206 33.333 0.00 0.00 0.00 2.66
4668 4932 5.179555 AGACGAATACAGAAAAAGGAACAGC 59.820 40.000 0.00 0.00 0.00 4.40
4757 5021 5.409826 AGGAGAGACGAAATTACAAGCAAAG 59.590 40.000 0.00 0.00 0.00 2.77
4758 5022 5.305585 AGGAGAGACGAAATTACAAGCAAA 58.694 37.500 0.00 0.00 0.00 3.68
4759 5023 4.894784 AGGAGAGACGAAATTACAAGCAA 58.105 39.130 0.00 0.00 0.00 3.91
4760 5024 4.495422 GAGGAGAGACGAAATTACAAGCA 58.505 43.478 0.00 0.00 0.00 3.91
4761 5025 3.866327 GGAGGAGAGACGAAATTACAAGC 59.134 47.826 0.00 0.00 0.00 4.01
4762 5026 4.434520 GGGAGGAGAGACGAAATTACAAG 58.565 47.826 0.00 0.00 0.00 3.16
4763 5027 3.197116 GGGGAGGAGAGACGAAATTACAA 59.803 47.826 0.00 0.00 0.00 2.41
4764 5028 2.764572 GGGGAGGAGAGACGAAATTACA 59.235 50.000 0.00 0.00 0.00 2.41
4765 5029 2.102757 GGGGGAGGAGAGACGAAATTAC 59.897 54.545 0.00 0.00 0.00 1.89
4766 5030 2.395619 GGGGGAGGAGAGACGAAATTA 58.604 52.381 0.00 0.00 0.00 1.40
4767 5031 1.205055 GGGGGAGGAGAGACGAAATT 58.795 55.000 0.00 0.00 0.00 1.82
4768 5032 2.917804 GGGGGAGGAGAGACGAAAT 58.082 57.895 0.00 0.00 0.00 2.17
4783 5047 3.318313 AGGACAGAGTTACATATGGGGG 58.682 50.000 7.80 0.00 0.00 5.40
4784 5048 3.967326 TGAGGACAGAGTTACATATGGGG 59.033 47.826 7.80 0.00 0.00 4.96
4785 5049 5.070981 ACATGAGGACAGAGTTACATATGGG 59.929 44.000 7.80 0.00 0.00 4.00
4786 5050 6.166984 ACATGAGGACAGAGTTACATATGG 57.833 41.667 7.80 0.00 0.00 2.74
4787 5051 7.653713 GGTTACATGAGGACAGAGTTACATATG 59.346 40.741 0.00 0.00 0.00 1.78
4788 5052 7.470147 CGGTTACATGAGGACAGAGTTACATAT 60.470 40.741 0.00 0.00 0.00 1.78
4789 5053 6.183360 CGGTTACATGAGGACAGAGTTACATA 60.183 42.308 0.00 0.00 0.00 2.29
4791 5055 4.082408 CGGTTACATGAGGACAGAGTTACA 60.082 45.833 0.00 0.00 0.00 2.41
4792 5056 4.421948 CGGTTACATGAGGACAGAGTTAC 58.578 47.826 0.00 0.00 0.00 2.50
4793 5057 3.119245 GCGGTTACATGAGGACAGAGTTA 60.119 47.826 0.00 0.00 0.00 2.24
4796 5060 1.478510 AGCGGTTACATGAGGACAGAG 59.521 52.381 0.00 0.00 0.00 3.35
4797 5061 1.476891 GAGCGGTTACATGAGGACAGA 59.523 52.381 0.00 0.00 0.00 3.41
4798 5062 1.471676 GGAGCGGTTACATGAGGACAG 60.472 57.143 0.00 0.00 0.00 3.51
4800 5064 0.824759 AGGAGCGGTTACATGAGGAC 59.175 55.000 0.00 0.00 0.00 3.85
4801 5065 1.112113 GAGGAGCGGTTACATGAGGA 58.888 55.000 0.00 0.00 0.00 3.71
4802 5066 0.824109 TGAGGAGCGGTTACATGAGG 59.176 55.000 0.00 0.00 0.00 3.86
4805 5069 2.355756 CCAATTGAGGAGCGGTTACATG 59.644 50.000 7.12 0.00 0.00 3.21
4807 5071 1.349688 ACCAATTGAGGAGCGGTTACA 59.650 47.619 7.12 0.00 0.00 2.41
4808 5072 2.109425 ACCAATTGAGGAGCGGTTAC 57.891 50.000 7.12 0.00 0.00 2.50
4810 5074 2.871096 TTACCAATTGAGGAGCGGTT 57.129 45.000 7.12 0.00 0.00 4.44
4811 5075 4.497291 TTATTACCAATTGAGGAGCGGT 57.503 40.909 7.12 0.00 0.00 5.68
4812 5076 5.357032 ACTTTTATTACCAATTGAGGAGCGG 59.643 40.000 7.12 0.00 0.00 5.52
4813 5077 6.436843 ACTTTTATTACCAATTGAGGAGCG 57.563 37.500 7.12 0.00 0.00 5.03
4814 5078 7.826690 TGAACTTTTATTACCAATTGAGGAGC 58.173 34.615 7.12 0.00 0.00 4.70
4815 5079 8.462016 CCTGAACTTTTATTACCAATTGAGGAG 58.538 37.037 7.12 0.00 0.00 3.69
4816 5080 7.947890 ACCTGAACTTTTATTACCAATTGAGGA 59.052 33.333 7.12 0.00 0.00 3.71
4817 5081 8.122472 ACCTGAACTTTTATTACCAATTGAGG 57.878 34.615 7.12 2.82 0.00 3.86
4820 5084 7.973944 GCCTACCTGAACTTTTATTACCAATTG 59.026 37.037 0.00 0.00 0.00 2.32
4823 5087 5.644636 CGCCTACCTGAACTTTTATTACCAA 59.355 40.000 0.00 0.00 0.00 3.67
4824 5088 5.180271 CGCCTACCTGAACTTTTATTACCA 58.820 41.667 0.00 0.00 0.00 3.25
4825 5089 5.181009 ACGCCTACCTGAACTTTTATTACC 58.819 41.667 0.00 0.00 0.00 2.85
4826 5090 7.465111 GCTTACGCCTACCTGAACTTTTATTAC 60.465 40.741 0.00 0.00 0.00 1.89
4827 5091 6.536224 GCTTACGCCTACCTGAACTTTTATTA 59.464 38.462 0.00 0.00 0.00 0.98
4829 5093 4.874396 GCTTACGCCTACCTGAACTTTTAT 59.126 41.667 0.00 0.00 0.00 1.40
4830 5094 4.248058 GCTTACGCCTACCTGAACTTTTA 58.752 43.478 0.00 0.00 0.00 1.52
4831 5095 3.072211 GCTTACGCCTACCTGAACTTTT 58.928 45.455 0.00 0.00 0.00 2.27
4832 5096 2.696506 GCTTACGCCTACCTGAACTTT 58.303 47.619 0.00 0.00 0.00 2.66
4833 5097 2.381725 GCTTACGCCTACCTGAACTT 57.618 50.000 0.00 0.00 0.00 2.66
4845 5109 2.357760 TCAACGGTGGGCTTACGC 60.358 61.111 0.00 0.00 0.00 4.42
4847 5111 2.674084 GCGTCAACGGTGGGCTTAC 61.674 63.158 0.00 0.00 40.23 2.34
4852 5116 4.953868 TGACGCGTCAACGGTGGG 62.954 66.667 37.68 0.00 40.23 4.61
4853 5117 2.962786 TTGACGCGTCAACGGTGG 60.963 61.111 42.01 0.00 43.90 4.61
4875 5139 2.036604 CACTAATTGTGCGGGGGTTTTT 59.963 45.455 0.00 0.00 40.06 1.94
4877 5141 1.202952 TCACTAATTGTGCGGGGGTTT 60.203 47.619 0.00 0.00 45.81 3.27
4878 5142 0.402504 TCACTAATTGTGCGGGGGTT 59.597 50.000 0.00 0.00 45.81 4.11
4879 5143 0.322187 GTCACTAATTGTGCGGGGGT 60.322 55.000 0.00 0.00 45.81 4.95
4880 5144 0.035439 AGTCACTAATTGTGCGGGGG 60.035 55.000 0.00 0.00 45.81 5.40
4881 5145 1.468520 CAAGTCACTAATTGTGCGGGG 59.531 52.381 0.00 0.00 45.81 5.73
4882 5146 2.159627 GTCAAGTCACTAATTGTGCGGG 59.840 50.000 0.00 0.00 45.81 6.13
4883 5147 3.067106 AGTCAAGTCACTAATTGTGCGG 58.933 45.455 0.00 0.00 45.81 5.69
4884 5148 4.211164 TGAAGTCAAGTCACTAATTGTGCG 59.789 41.667 0.00 0.00 45.81 5.34
4885 5149 5.673337 TGAAGTCAAGTCACTAATTGTGC 57.327 39.130 0.00 0.00 45.81 4.57
4887 5151 5.237344 GTGCTGAAGTCAAGTCACTAATTGT 59.763 40.000 0.00 0.00 0.00 2.71
4888 5152 5.237127 TGTGCTGAAGTCAAGTCACTAATTG 59.763 40.000 0.00 0.00 0.00 2.32
4890 5154 4.960938 TGTGCTGAAGTCAAGTCACTAAT 58.039 39.130 8.50 0.00 0.00 1.73
4918 5944 2.793790 TGCTAATTTGCACAAAACAGCG 59.206 40.909 10.62 3.77 40.79 5.18
4936 5962 1.074405 ACCATGACTTGTGTGGATGCT 59.926 47.619 0.00 0.00 36.82 3.79
4978 6004 6.201425 TGAGTAAATTGTACAGAACGACAACC 59.799 38.462 0.00 0.00 38.33 3.77
5021 6047 3.797507 CTTGCTGGTGCCTGGTGGT 62.798 63.158 0.00 0.00 38.71 4.16
5088 6114 0.729116 CTGTGGCAGCCAGATTTACG 59.271 55.000 16.83 0.00 32.34 3.18
5104 6130 0.890996 GTTGGCTTGCCACTAGCTGT 60.891 55.000 14.52 0.00 44.23 4.40
5141 6167 4.458295 ACTCTGTCCTGATGCAATTCTTTG 59.542 41.667 0.00 0.00 35.85 2.77
5142 6168 4.458295 CACTCTGTCCTGATGCAATTCTTT 59.542 41.667 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.