Multiple sequence alignment - TraesCS3D01G110600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G110600 chr3D 100.000 3784 0 0 1 3784 64198715 64202498 0.000000e+00 6988
1 TraesCS3D01G110600 chr3D 84.343 396 50 7 3381 3774 64201712 64202097 9.920000e-101 377
2 TraesCS3D01G110600 chr3D 84.343 396 50 7 2998 3383 64202095 64202488 9.920000e-101 377
3 TraesCS3D01G110600 chr3B 94.813 2545 94 16 872 3383 106645663 106648202 0.000000e+00 3934
4 TraesCS3D01G110600 chr3B 92.762 525 35 1 2238 2762 106654129 106654650 0.000000e+00 756
5 TraesCS3D01G110600 chr3B 96.659 419 6 3 3372 3783 106654772 106655189 0.000000e+00 689
6 TraesCS3D01G110600 chr3B 86.842 418 50 5 457 872 807715550 807715136 2.660000e-126 462
7 TraesCS3D01G110600 chr3B 84.632 475 57 8 2924 3383 106654707 106655180 3.440000e-125 459
8 TraesCS3D01G110600 chr3B 84.080 402 52 8 3385 3784 106647821 106648212 9.920000e-101 377
9 TraesCS3D01G110600 chr3B 92.763 152 8 2 299 449 106645523 106645672 2.290000e-52 217
10 TraesCS3D01G110600 chr3A 93.137 2550 105 26 872 3383 74427390 74429907 0.000000e+00 3675
11 TraesCS3D01G110600 chr3A 93.143 525 29 2 2238 2762 74431733 74432250 0.000000e+00 763
12 TraesCS3D01G110600 chr3A 89.734 526 28 9 2238 2762 74434862 74435362 0.000000e+00 649
13 TraesCS3D01G110600 chr3A 92.453 424 23 8 450 871 156119441 156119857 7.000000e-167 597
14 TraesCS3D01G110600 chr3A 92.417 422 22 6 3372 3784 74432371 74432791 9.050000e-166 593
15 TraesCS3D01G110600 chr3A 86.385 426 49 8 450 871 560502415 560502835 1.240000e-124 457
16 TraesCS3D01G110600 chr3A 83.891 478 56 14 2924 3383 74432307 74432781 1.610000e-118 436
17 TraesCS3D01G110600 chr3A 84.112 428 39 13 3381 3784 74429495 74429917 1.650000e-103 387
18 TraesCS3D01G110600 chr3A 95.775 213 6 3 3375 3586 74435487 74435697 1.300000e-89 340
19 TraesCS3D01G110600 chr3A 84.892 278 36 4 2926 3198 74435421 74435697 3.720000e-70 276
20 TraesCS3D01G110600 chr3A 90.141 142 8 1 3649 3784 74435695 74435836 3.000000e-41 180
21 TraesCS3D01G110600 chr6B 87.500 424 46 6 450 871 715584166 715583748 2.040000e-132 483
22 TraesCS3D01G110600 chr6B 86.557 424 49 6 450 871 86095760 86095343 9.580000e-126 460
23 TraesCS3D01G110600 chr7D 87.294 425 45 6 450 871 233289593 233289175 9.510000e-131 477
24 TraesCS3D01G110600 chr7B 88.265 392 41 5 449 837 339613230 339612841 7.400000e-127 464
25 TraesCS3D01G110600 chr4B 87.668 373 42 4 450 821 575776239 575776608 7.510000e-117 431
26 TraesCS3D01G110600 chr7A 83.879 428 57 12 450 871 398920839 398920418 7.620000e-107 398


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G110600 chr3D 64198715 64202498 3783 False 2580.666667 6988 89.562000 1 3784 3 chr3D.!!$F1 3783
1 TraesCS3D01G110600 chr3B 106645523 106648212 2689 False 1509.333333 3934 90.552000 299 3784 3 chr3B.!!$F1 3485
2 TraesCS3D01G110600 chr3B 106654129 106655189 1060 False 634.666667 756 91.351000 2238 3783 3 chr3B.!!$F2 1545
3 TraesCS3D01G110600 chr3A 74427390 74435836 8446 False 811.000000 3675 89.693556 872 3784 9 chr3A.!!$F3 2912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.174617 GAAAGTGGAGAGAGAGGCCG 59.825 60.0 0.0 0.0 0.00 6.13 F
1561 1563 0.032130 GCGGCAGATCAATCTCGGTA 59.968 55.0 0.0 0.0 34.22 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2071 1.673168 GGTTCAGCTGGCTTCCATAG 58.327 55.0 15.13 0.0 30.82 2.23 R
3051 3084 0.109342 ACTGTTGGACCTCAAGCTGG 59.891 55.0 0.00 0.0 35.80 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.682943 TTGTAGTGTTTCTCGATTTTGGG 57.317 39.130 0.00 0.00 0.00 4.12
23 24 4.710324 TGTAGTGTTTCTCGATTTTGGGT 58.290 39.130 0.00 0.00 0.00 4.51
24 25 5.856156 TGTAGTGTTTCTCGATTTTGGGTA 58.144 37.500 0.00 0.00 0.00 3.69
25 26 6.289834 TGTAGTGTTTCTCGATTTTGGGTAA 58.710 36.000 0.00 0.00 0.00 2.85
26 27 5.684550 AGTGTTTCTCGATTTTGGGTAAC 57.315 39.130 0.00 0.00 0.00 2.50
27 28 5.127491 AGTGTTTCTCGATTTTGGGTAACA 58.873 37.500 0.00 0.00 39.74 2.41
28 29 5.591067 AGTGTTTCTCGATTTTGGGTAACAA 59.409 36.000 0.00 0.00 37.28 2.83
29 30 6.095720 AGTGTTTCTCGATTTTGGGTAACAAA 59.904 34.615 0.00 0.00 46.82 2.83
40 41 2.995466 GGTAACAAACCTTTACCCGC 57.005 50.000 0.51 0.00 45.75 6.13
41 42 1.541147 GGTAACAAACCTTTACCCGCC 59.459 52.381 0.51 0.00 45.75 6.13
42 43 2.228925 GTAACAAACCTTTACCCGCCA 58.771 47.619 0.00 0.00 0.00 5.69
43 44 1.324383 AACAAACCTTTACCCGCCAG 58.676 50.000 0.00 0.00 0.00 4.85
44 45 0.475044 ACAAACCTTTACCCGCCAGA 59.525 50.000 0.00 0.00 0.00 3.86
45 46 1.165270 CAAACCTTTACCCGCCAGAG 58.835 55.000 0.00 0.00 0.00 3.35
46 47 1.061546 AAACCTTTACCCGCCAGAGA 58.938 50.000 0.00 0.00 0.00 3.10
47 48 0.613777 AACCTTTACCCGCCAGAGAG 59.386 55.000 0.00 0.00 0.00 3.20
48 49 0.544595 ACCTTTACCCGCCAGAGAGT 60.545 55.000 0.00 0.00 0.00 3.24
49 50 0.613777 CCTTTACCCGCCAGAGAGTT 59.386 55.000 0.00 0.00 0.00 3.01
50 51 1.003233 CCTTTACCCGCCAGAGAGTTT 59.997 52.381 0.00 0.00 0.00 2.66
51 52 2.076863 CTTTACCCGCCAGAGAGTTTG 58.923 52.381 0.00 0.00 0.00 2.93
52 53 1.344065 TTACCCGCCAGAGAGTTTGA 58.656 50.000 0.00 0.00 0.00 2.69
53 54 0.895530 TACCCGCCAGAGAGTTTGAG 59.104 55.000 0.00 0.00 0.00 3.02
54 55 1.078848 CCCGCCAGAGAGTTTGAGG 60.079 63.158 0.00 0.00 0.00 3.86
55 56 1.544825 CCCGCCAGAGAGTTTGAGGA 61.545 60.000 0.00 0.00 0.00 3.71
56 57 0.539051 CCGCCAGAGAGTTTGAGGAT 59.461 55.000 0.00 0.00 0.00 3.24
57 58 1.757118 CCGCCAGAGAGTTTGAGGATA 59.243 52.381 0.00 0.00 0.00 2.59
58 59 2.168521 CCGCCAGAGAGTTTGAGGATAA 59.831 50.000 0.00 0.00 0.00 1.75
59 60 3.369471 CCGCCAGAGAGTTTGAGGATAAA 60.369 47.826 0.00 0.00 0.00 1.40
60 61 4.253685 CGCCAGAGAGTTTGAGGATAAAA 58.746 43.478 0.00 0.00 0.00 1.52
61 62 4.878397 CGCCAGAGAGTTTGAGGATAAAAT 59.122 41.667 0.00 0.00 0.00 1.82
62 63 5.220739 CGCCAGAGAGTTTGAGGATAAAATG 60.221 44.000 0.00 0.00 0.00 2.32
63 64 5.449725 GCCAGAGAGTTTGAGGATAAAATGC 60.450 44.000 0.00 0.00 0.00 3.56
64 65 5.220739 CCAGAGAGTTTGAGGATAAAATGCG 60.221 44.000 0.00 0.00 0.00 4.73
65 66 5.352569 CAGAGAGTTTGAGGATAAAATGCGT 59.647 40.000 0.00 0.00 0.00 5.24
66 67 6.535150 CAGAGAGTTTGAGGATAAAATGCGTA 59.465 38.462 0.00 0.00 0.00 4.42
67 68 7.064609 CAGAGAGTTTGAGGATAAAATGCGTAA 59.935 37.037 0.00 0.00 0.00 3.18
68 69 7.770897 AGAGAGTTTGAGGATAAAATGCGTAAT 59.229 33.333 0.00 0.00 0.00 1.89
69 70 7.920738 AGAGTTTGAGGATAAAATGCGTAATC 58.079 34.615 0.00 0.00 0.00 1.75
70 71 7.770897 AGAGTTTGAGGATAAAATGCGTAATCT 59.229 33.333 0.00 0.00 0.00 2.40
71 72 8.281212 AGTTTGAGGATAAAATGCGTAATCTT 57.719 30.769 0.00 0.00 0.00 2.40
72 73 8.398665 AGTTTGAGGATAAAATGCGTAATCTTC 58.601 33.333 0.00 2.70 0.00 2.87
73 74 8.398665 GTTTGAGGATAAAATGCGTAATCTTCT 58.601 33.333 8.47 0.00 0.00 2.85
74 75 7.715265 TGAGGATAAAATGCGTAATCTTCTC 57.285 36.000 8.47 0.00 0.00 2.87
75 76 6.420903 TGAGGATAAAATGCGTAATCTTCTCG 59.579 38.462 8.47 0.00 0.00 4.04
76 77 6.513180 AGGATAAAATGCGTAATCTTCTCGA 58.487 36.000 0.00 0.00 0.00 4.04
77 78 7.155328 AGGATAAAATGCGTAATCTTCTCGAT 58.845 34.615 0.00 0.00 0.00 3.59
78 79 7.657761 AGGATAAAATGCGTAATCTTCTCGATT 59.342 33.333 0.00 0.00 44.35 3.34
79 80 8.283291 GGATAAAATGCGTAATCTTCTCGATTT 58.717 33.333 0.00 0.00 42.26 2.17
80 81 9.307451 GATAAAATGCGTAATCTTCTCGATTTC 57.693 33.333 0.00 0.00 42.26 2.17
81 82 6.910536 AAATGCGTAATCTTCTCGATTTCT 57.089 33.333 0.00 0.00 42.26 2.52
82 83 8.420374 AAAATGCGTAATCTTCTCGATTTCTA 57.580 30.769 0.00 0.00 42.26 2.10
83 84 7.630470 AATGCGTAATCTTCTCGATTTCTAG 57.370 36.000 0.00 0.00 42.26 2.43
84 85 6.373186 TGCGTAATCTTCTCGATTTCTAGA 57.627 37.500 0.00 0.00 42.26 2.43
85 86 6.431278 TGCGTAATCTTCTCGATTTCTAGAG 58.569 40.000 0.00 0.00 42.26 2.43
86 87 5.854338 GCGTAATCTTCTCGATTTCTAGAGG 59.146 44.000 0.00 0.00 42.26 3.69
87 88 6.293516 GCGTAATCTTCTCGATTTCTAGAGGA 60.294 42.308 0.00 0.00 42.26 3.71
88 89 7.574217 GCGTAATCTTCTCGATTTCTAGAGGAT 60.574 40.741 0.00 2.17 42.26 3.24
89 90 8.293867 CGTAATCTTCTCGATTTCTAGAGGATT 58.706 37.037 17.57 17.57 45.27 3.01
90 91 9.405587 GTAATCTTCTCGATTTCTAGAGGATTG 57.594 37.037 20.36 0.00 43.96 2.67
91 92 7.831691 ATCTTCTCGATTTCTAGAGGATTGA 57.168 36.000 0.00 0.78 35.67 2.57
92 93 7.270757 TCTTCTCGATTTCTAGAGGATTGAG 57.729 40.000 19.81 19.81 35.34 3.02
93 94 6.831353 TCTTCTCGATTTCTAGAGGATTGAGT 59.169 38.462 22.44 0.00 34.39 3.41
94 95 7.993758 TCTTCTCGATTTCTAGAGGATTGAGTA 59.006 37.037 22.44 16.90 34.39 2.59
95 96 7.737972 TCTCGATTTCTAGAGGATTGAGTAG 57.262 40.000 22.44 9.26 34.39 2.57
96 97 7.510407 TCTCGATTTCTAGAGGATTGAGTAGA 58.490 38.462 22.44 10.68 34.39 2.59
97 98 7.659799 TCTCGATTTCTAGAGGATTGAGTAGAG 59.340 40.741 22.44 9.28 34.39 2.43
98 99 7.510407 TCGATTTCTAGAGGATTGAGTAGAGA 58.490 38.462 0.00 0.00 0.00 3.10
99 100 7.993758 TCGATTTCTAGAGGATTGAGTAGAGAA 59.006 37.037 0.00 0.00 0.00 2.87
100 101 8.625651 CGATTTCTAGAGGATTGAGTAGAGAAA 58.374 37.037 0.00 0.00 36.44 2.52
101 102 9.965824 GATTTCTAGAGGATTGAGTAGAGAAAG 57.034 37.037 0.00 0.00 35.72 2.62
102 103 8.887264 TTTCTAGAGGATTGAGTAGAGAAAGT 57.113 34.615 0.00 0.00 30.41 2.66
103 104 7.873719 TCTAGAGGATTGAGTAGAGAAAGTG 57.126 40.000 0.00 0.00 0.00 3.16
104 105 5.930837 AGAGGATTGAGTAGAGAAAGTGG 57.069 43.478 0.00 0.00 0.00 4.00
105 106 5.584913 AGAGGATTGAGTAGAGAAAGTGGA 58.415 41.667 0.00 0.00 0.00 4.02
106 107 5.656416 AGAGGATTGAGTAGAGAAAGTGGAG 59.344 44.000 0.00 0.00 0.00 3.86
107 108 5.584913 AGGATTGAGTAGAGAAAGTGGAGA 58.415 41.667 0.00 0.00 0.00 3.71
108 109 5.656416 AGGATTGAGTAGAGAAAGTGGAGAG 59.344 44.000 0.00 0.00 0.00 3.20
109 110 5.654650 GGATTGAGTAGAGAAAGTGGAGAGA 59.345 44.000 0.00 0.00 0.00 3.10
110 111 6.183360 GGATTGAGTAGAGAAAGTGGAGAGAG 60.183 46.154 0.00 0.00 0.00 3.20
111 112 5.506730 TGAGTAGAGAAAGTGGAGAGAGA 57.493 43.478 0.00 0.00 0.00 3.10
112 113 5.496556 TGAGTAGAGAAAGTGGAGAGAGAG 58.503 45.833 0.00 0.00 0.00 3.20
113 114 4.855340 AGTAGAGAAAGTGGAGAGAGAGG 58.145 47.826 0.00 0.00 0.00 3.69
114 115 2.456577 AGAGAAAGTGGAGAGAGAGGC 58.543 52.381 0.00 0.00 0.00 4.70
115 116 1.480545 GAGAAAGTGGAGAGAGAGGCC 59.519 57.143 0.00 0.00 0.00 5.19
116 117 0.174617 GAAAGTGGAGAGAGAGGCCG 59.825 60.000 0.00 0.00 0.00 6.13
117 118 0.251832 AAAGTGGAGAGAGAGGCCGA 60.252 55.000 0.00 0.00 0.00 5.54
118 119 0.251832 AAGTGGAGAGAGAGGCCGAA 60.252 55.000 0.00 0.00 0.00 4.30
119 120 0.682855 AGTGGAGAGAGAGGCCGAAG 60.683 60.000 0.00 0.00 0.00 3.79
135 136 2.933769 CGAAGGTGCACCAGATTTTTC 58.066 47.619 36.39 26.40 38.89 2.29
136 137 2.293122 CGAAGGTGCACCAGATTTTTCA 59.707 45.455 36.39 0.00 38.89 2.69
137 138 3.243367 CGAAGGTGCACCAGATTTTTCAA 60.243 43.478 36.39 0.00 38.89 2.69
138 139 4.692228 GAAGGTGCACCAGATTTTTCAAA 58.308 39.130 36.39 0.00 38.89 2.69
139 140 4.751767 AGGTGCACCAGATTTTTCAAAA 57.248 36.364 36.39 0.00 38.89 2.44
140 141 4.696455 AGGTGCACCAGATTTTTCAAAAG 58.304 39.130 36.39 0.00 38.89 2.27
141 142 3.809279 GGTGCACCAGATTTTTCAAAAGG 59.191 43.478 31.23 0.00 35.64 3.11
142 143 3.248363 GTGCACCAGATTTTTCAAAAGGC 59.752 43.478 5.22 0.00 0.00 4.35
143 144 3.134442 TGCACCAGATTTTTCAAAAGGCT 59.866 39.130 0.00 0.00 0.00 4.58
144 145 3.742882 GCACCAGATTTTTCAAAAGGCTC 59.257 43.478 0.00 0.00 0.00 4.70
145 146 4.502087 GCACCAGATTTTTCAAAAGGCTCT 60.502 41.667 0.00 0.00 0.00 4.09
146 147 5.278957 GCACCAGATTTTTCAAAAGGCTCTA 60.279 40.000 0.00 0.00 0.00 2.43
147 148 6.385033 CACCAGATTTTTCAAAAGGCTCTAG 58.615 40.000 0.00 0.00 0.00 2.43
148 149 6.015940 CACCAGATTTTTCAAAAGGCTCTAGT 60.016 38.462 0.00 0.00 0.00 2.57
149 150 6.015940 ACCAGATTTTTCAAAAGGCTCTAGTG 60.016 38.462 0.00 0.00 0.00 2.74
150 151 6.015940 CCAGATTTTTCAAAAGGCTCTAGTGT 60.016 38.462 0.00 0.00 0.00 3.55
151 152 7.174946 CCAGATTTTTCAAAAGGCTCTAGTGTA 59.825 37.037 0.00 0.00 0.00 2.90
152 153 8.017946 CAGATTTTTCAAAAGGCTCTAGTGTAC 58.982 37.037 0.00 0.00 0.00 2.90
153 154 7.719633 AGATTTTTCAAAAGGCTCTAGTGTACA 59.280 33.333 0.00 0.00 0.00 2.90
154 155 7.633193 TTTTTCAAAAGGCTCTAGTGTACAA 57.367 32.000 0.00 0.00 0.00 2.41
155 156 7.633193 TTTTCAAAAGGCTCTAGTGTACAAA 57.367 32.000 0.00 0.00 0.00 2.83
156 157 7.817418 TTTCAAAAGGCTCTAGTGTACAAAT 57.183 32.000 0.00 0.00 0.00 2.32
157 158 7.817418 TTCAAAAGGCTCTAGTGTACAAATT 57.183 32.000 0.00 0.00 0.00 1.82
158 159 7.435068 TCAAAAGGCTCTAGTGTACAAATTC 57.565 36.000 0.00 0.00 0.00 2.17
159 160 6.995686 TCAAAAGGCTCTAGTGTACAAATTCA 59.004 34.615 0.00 0.00 0.00 2.57
160 161 7.665559 TCAAAAGGCTCTAGTGTACAAATTCAT 59.334 33.333 0.00 0.00 0.00 2.57
161 162 8.299570 CAAAAGGCTCTAGTGTACAAATTCATT 58.700 33.333 0.00 0.00 0.00 2.57
162 163 9.515226 AAAAGGCTCTAGTGTACAAATTCATTA 57.485 29.630 0.00 0.00 0.00 1.90
163 164 8.723942 AAGGCTCTAGTGTACAAATTCATTAG 57.276 34.615 0.00 0.00 0.00 1.73
164 165 7.275920 AGGCTCTAGTGTACAAATTCATTAGG 58.724 38.462 0.00 0.00 0.00 2.69
165 166 7.125811 AGGCTCTAGTGTACAAATTCATTAGGA 59.874 37.037 0.00 0.00 0.00 2.94
166 167 7.934120 GGCTCTAGTGTACAAATTCATTAGGAT 59.066 37.037 0.00 0.00 0.00 3.24
167 168 8.983724 GCTCTAGTGTACAAATTCATTAGGATC 58.016 37.037 0.00 0.00 0.00 3.36
171 172 8.281212 AGTGTACAAATTCATTAGGATCAACC 57.719 34.615 0.00 0.00 39.35 3.77
199 200 8.961294 TGAAATTCCTTCATGTTGTTTTCATT 57.039 26.923 0.00 0.00 39.20 2.57
200 201 9.393512 TGAAATTCCTTCATGTTGTTTTCATTT 57.606 25.926 0.00 0.00 39.20 2.32
203 204 8.735692 ATTCCTTCATGTTGTTTTCATTTTGT 57.264 26.923 0.00 0.00 0.00 2.83
204 205 9.829507 ATTCCTTCATGTTGTTTTCATTTTGTA 57.170 25.926 0.00 0.00 0.00 2.41
205 206 9.829507 TTCCTTCATGTTGTTTTCATTTTGTAT 57.170 25.926 0.00 0.00 0.00 2.29
206 207 9.829507 TCCTTCATGTTGTTTTCATTTTGTATT 57.170 25.926 0.00 0.00 0.00 1.89
207 208 9.866936 CCTTCATGTTGTTTTCATTTTGTATTG 57.133 29.630 0.00 0.00 0.00 1.90
208 209 9.372541 CTTCATGTTGTTTTCATTTTGTATTGC 57.627 29.630 0.00 0.00 0.00 3.56
209 210 7.562412 TCATGTTGTTTTCATTTTGTATTGCG 58.438 30.769 0.00 0.00 0.00 4.85
210 211 6.279227 TGTTGTTTTCATTTTGTATTGCGG 57.721 33.333 0.00 0.00 0.00 5.69
211 212 5.812642 TGTTGTTTTCATTTTGTATTGCGGT 59.187 32.000 0.00 0.00 0.00 5.68
212 213 6.978659 TGTTGTTTTCATTTTGTATTGCGGTA 59.021 30.769 0.00 0.00 0.00 4.02
213 214 7.653713 TGTTGTTTTCATTTTGTATTGCGGTAT 59.346 29.630 0.00 0.00 0.00 2.73
214 215 8.491950 GTTGTTTTCATTTTGTATTGCGGTATT 58.508 29.630 0.00 0.00 0.00 1.89
215 216 8.594881 TGTTTTCATTTTGTATTGCGGTATTT 57.405 26.923 0.00 0.00 0.00 1.40
216 217 8.704234 TGTTTTCATTTTGTATTGCGGTATTTC 58.296 29.630 0.00 0.00 0.00 2.17
217 218 8.704234 GTTTTCATTTTGTATTGCGGTATTTCA 58.296 29.630 0.00 0.00 0.00 2.69
218 219 7.804614 TTCATTTTGTATTGCGGTATTTCAC 57.195 32.000 0.00 0.00 0.00 3.18
219 220 7.151999 TCATTTTGTATTGCGGTATTTCACT 57.848 32.000 0.00 0.00 0.00 3.41
220 221 7.598278 TCATTTTGTATTGCGGTATTTCACTT 58.402 30.769 0.00 0.00 0.00 3.16
221 222 8.085296 TCATTTTGTATTGCGGTATTTCACTTT 58.915 29.630 0.00 0.00 0.00 2.66
222 223 7.861176 TTTTGTATTGCGGTATTTCACTTTC 57.139 32.000 0.00 0.00 0.00 2.62
223 224 6.811253 TTGTATTGCGGTATTTCACTTTCT 57.189 33.333 0.00 0.00 0.00 2.52
224 225 6.811253 TGTATTGCGGTATTTCACTTTCTT 57.189 33.333 0.00 0.00 0.00 2.52
225 226 7.908827 TGTATTGCGGTATTTCACTTTCTTA 57.091 32.000 0.00 0.00 0.00 2.10
226 227 8.500753 TGTATTGCGGTATTTCACTTTCTTAT 57.499 30.769 0.00 0.00 0.00 1.73
227 228 9.602568 TGTATTGCGGTATTTCACTTTCTTATA 57.397 29.630 0.00 0.00 0.00 0.98
228 229 9.859692 GTATTGCGGTATTTCACTTTCTTATAC 57.140 33.333 0.00 0.00 0.00 1.47
229 230 7.908827 TTGCGGTATTTCACTTTCTTATACA 57.091 32.000 0.00 0.00 0.00 2.29
230 231 7.908827 TGCGGTATTTCACTTTCTTATACAA 57.091 32.000 0.00 0.00 0.00 2.41
231 232 8.500753 TGCGGTATTTCACTTTCTTATACAAT 57.499 30.769 0.00 0.00 0.00 2.71
232 233 9.602568 TGCGGTATTTCACTTTCTTATACAATA 57.397 29.630 0.00 0.00 0.00 1.90
233 234 9.859692 GCGGTATTTCACTTTCTTATACAATAC 57.140 33.333 0.00 0.00 0.00 1.89
291 292 9.944376 TGTGTTTATTTCTGCTAGAATTACTCT 57.056 29.630 0.00 0.00 33.67 3.24
344 345 4.222886 CAAACAAAACACTCACGAACACA 58.777 39.130 0.00 0.00 0.00 3.72
347 348 3.119990 ACAAAACACTCACGAACACAAGG 60.120 43.478 0.00 0.00 0.00 3.61
356 357 4.452825 TCACGAACACAAGGGTTCAAATA 58.547 39.130 14.84 0.00 45.82 1.40
392 394 0.462047 GAACACGGTGCTCATAGGGG 60.462 60.000 8.30 0.00 0.00 4.79
439 441 4.708177 TCCATTTCCCAAAGAGATCGATC 58.292 43.478 17.91 17.91 0.00 3.69
440 442 4.164030 TCCATTTCCCAAAGAGATCGATCA 59.836 41.667 26.47 2.73 0.00 2.92
441 443 4.274459 CCATTTCCCAAAGAGATCGATCAC 59.726 45.833 26.47 20.38 0.00 3.06
442 444 2.871182 TCCCAAAGAGATCGATCACG 57.129 50.000 26.47 8.46 41.26 4.35
443 445 2.100197 TCCCAAAGAGATCGATCACGT 58.900 47.619 26.47 16.11 40.69 4.49
444 446 2.099263 TCCCAAAGAGATCGATCACGTC 59.901 50.000 26.47 15.47 40.69 4.34
445 447 2.464865 CCAAAGAGATCGATCACGTCC 58.535 52.381 26.47 10.21 40.69 4.79
446 448 2.099921 CCAAAGAGATCGATCACGTCCT 59.900 50.000 26.47 12.12 40.69 3.85
447 449 3.367607 CAAAGAGATCGATCACGTCCTC 58.632 50.000 26.47 14.08 40.69 3.71
448 450 1.222300 AGAGATCGATCACGTCCTCG 58.778 55.000 26.47 9.44 40.57 4.63
449 451 0.236187 GAGATCGATCACGTCCTCGG 59.764 60.000 26.47 0.00 41.85 4.63
450 452 1.167155 AGATCGATCACGTCCTCGGG 61.167 60.000 26.47 0.00 42.43 5.14
451 453 2.131294 GATCGATCACGTCCTCGGGG 62.131 65.000 20.52 0.00 41.28 5.73
452 454 2.619941 ATCGATCACGTCCTCGGGGA 62.620 60.000 0.00 0.00 41.28 4.81
453 455 2.412323 CGATCACGTCCTCGGGGAA 61.412 63.158 5.00 0.00 44.15 3.97
454 456 1.895238 GATCACGTCCTCGGGGAAA 59.105 57.895 5.00 0.00 44.15 3.13
455 457 0.248289 GATCACGTCCTCGGGGAAAA 59.752 55.000 5.00 0.00 44.15 2.29
456 458 0.909623 ATCACGTCCTCGGGGAAAAT 59.090 50.000 5.00 0.00 44.15 1.82
457 459 1.559368 TCACGTCCTCGGGGAAAATA 58.441 50.000 5.00 0.00 44.15 1.40
458 460 2.112998 TCACGTCCTCGGGGAAAATAT 58.887 47.619 5.00 0.00 44.15 1.28
459 461 2.101917 TCACGTCCTCGGGGAAAATATC 59.898 50.000 5.00 0.00 44.15 1.63
460 462 1.068127 ACGTCCTCGGGGAAAATATCG 59.932 52.381 5.00 6.96 44.15 2.92
461 463 1.604693 CGTCCTCGGGGAAAATATCGG 60.605 57.143 5.00 0.00 44.15 4.18
462 464 1.053424 TCCTCGGGGAAAATATCGGG 58.947 55.000 0.00 0.00 38.93 5.14
463 465 0.763035 CCTCGGGGAAAATATCGGGT 59.237 55.000 0.00 0.00 33.58 5.28
464 466 1.542547 CCTCGGGGAAAATATCGGGTG 60.543 57.143 0.00 0.00 33.58 4.61
465 467 0.179040 TCGGGGAAAATATCGGGTGC 60.179 55.000 0.00 0.00 0.00 5.01
466 468 0.179029 CGGGGAAAATATCGGGTGCT 60.179 55.000 0.00 0.00 0.00 4.40
467 469 1.605753 GGGGAAAATATCGGGTGCTC 58.394 55.000 0.00 0.00 0.00 4.26
468 470 1.605753 GGGAAAATATCGGGTGCTCC 58.394 55.000 0.00 0.00 0.00 4.70
478 480 2.045536 GGTGCTCCCAGCCTTGAG 60.046 66.667 0.00 0.00 41.51 3.02
479 481 2.045536 GTGCTCCCAGCCTTGAGG 60.046 66.667 0.00 0.00 41.51 3.86
480 482 2.530151 TGCTCCCAGCCTTGAGGT 60.530 61.111 0.00 0.00 41.51 3.85
481 483 1.229496 TGCTCCCAGCCTTGAGGTA 60.229 57.895 0.00 0.00 41.51 3.08
482 484 1.222113 GCTCCCAGCCTTGAGGTAC 59.778 63.158 0.00 0.00 34.48 3.34
483 485 1.268283 GCTCCCAGCCTTGAGGTACT 61.268 60.000 0.00 0.00 36.75 2.73
484 486 3.180406 GCTCCCAGCCTTGAGGTACTC 62.180 61.905 0.00 0.00 46.08 2.59
494 496 4.463043 AGGTACTCCCAGTGCTCC 57.537 61.111 0.00 0.00 34.66 4.70
495 497 1.469708 AGGTACTCCCAGTGCTCCA 59.530 57.895 0.00 0.00 34.66 3.86
496 498 0.178903 AGGTACTCCCAGTGCTCCAA 60.179 55.000 0.00 0.00 34.66 3.53
497 499 0.912486 GGTACTCCCAGTGCTCCAAT 59.088 55.000 0.00 0.00 31.18 3.16
498 500 1.407437 GGTACTCCCAGTGCTCCAATG 60.407 57.143 0.00 0.00 31.18 2.82
499 501 1.279271 GTACTCCCAGTGCTCCAATGT 59.721 52.381 0.00 0.00 0.00 2.71
500 502 0.326264 ACTCCCAGTGCTCCAATGTC 59.674 55.000 0.00 0.00 0.00 3.06
501 503 0.325933 CTCCCAGTGCTCCAATGTCA 59.674 55.000 0.00 0.00 0.00 3.58
502 504 0.994247 TCCCAGTGCTCCAATGTCAT 59.006 50.000 0.00 0.00 0.00 3.06
503 505 2.171237 CTCCCAGTGCTCCAATGTCATA 59.829 50.000 0.00 0.00 0.00 2.15
504 506 2.575735 TCCCAGTGCTCCAATGTCATAA 59.424 45.455 0.00 0.00 0.00 1.90
505 507 3.010027 TCCCAGTGCTCCAATGTCATAAA 59.990 43.478 0.00 0.00 0.00 1.40
506 508 3.763360 CCCAGTGCTCCAATGTCATAAAA 59.237 43.478 0.00 0.00 0.00 1.52
507 509 4.220382 CCCAGTGCTCCAATGTCATAAAAA 59.780 41.667 0.00 0.00 0.00 1.94
508 510 5.163513 CCAGTGCTCCAATGTCATAAAAAC 58.836 41.667 0.00 0.00 0.00 2.43
509 511 5.278907 CCAGTGCTCCAATGTCATAAAAACA 60.279 40.000 0.00 0.00 0.00 2.83
510 512 6.392354 CAGTGCTCCAATGTCATAAAAACAT 58.608 36.000 0.00 0.00 38.98 2.71
511 513 6.869913 CAGTGCTCCAATGTCATAAAAACATT 59.130 34.615 0.00 0.00 45.73 2.71
512 514 7.385752 CAGTGCTCCAATGTCATAAAAACATTT 59.614 33.333 0.00 0.00 43.08 2.32
513 515 7.933033 AGTGCTCCAATGTCATAAAAACATTTT 59.067 29.630 0.00 0.00 43.08 1.82
514 516 8.558700 GTGCTCCAATGTCATAAAAACATTTTT 58.441 29.630 7.44 7.44 43.08 1.94
567 569 6.778834 ATGAATGTTCATAAGGAATGTGCA 57.221 33.333 6.46 0.00 45.54 4.57
568 570 6.778834 TGAATGTTCATAAGGAATGTGCAT 57.221 33.333 0.00 0.00 37.93 3.96
569 571 7.878547 TGAATGTTCATAAGGAATGTGCATA 57.121 32.000 0.00 0.00 37.93 3.14
570 572 7.706159 TGAATGTTCATAAGGAATGTGCATAC 58.294 34.615 0.00 0.00 37.93 2.39
571 573 6.639632 ATGTTCATAAGGAATGTGCATACC 57.360 37.500 0.00 0.00 37.93 2.73
572 574 5.504853 TGTTCATAAGGAATGTGCATACCA 58.495 37.500 0.00 0.00 37.93 3.25
573 575 6.128486 TGTTCATAAGGAATGTGCATACCAT 58.872 36.000 0.00 0.00 37.93 3.55
574 576 6.262944 TGTTCATAAGGAATGTGCATACCATC 59.737 38.462 0.00 0.00 37.93 3.51
575 577 5.316167 TCATAAGGAATGTGCATACCATCC 58.684 41.667 0.00 0.00 36.89 3.51
576 578 2.664402 AGGAATGTGCATACCATCCC 57.336 50.000 7.79 0.00 33.37 3.85
577 579 2.138542 AGGAATGTGCATACCATCCCT 58.861 47.619 7.79 0.00 33.37 4.20
578 580 3.326521 AGGAATGTGCATACCATCCCTA 58.673 45.455 7.79 0.00 33.37 3.53
579 581 3.721575 AGGAATGTGCATACCATCCCTAA 59.278 43.478 7.79 0.00 33.37 2.69
580 582 4.167892 AGGAATGTGCATACCATCCCTAAA 59.832 41.667 7.79 0.00 33.37 1.85
581 583 4.892934 GGAATGTGCATACCATCCCTAAAA 59.107 41.667 0.00 0.00 0.00 1.52
582 584 5.362430 GGAATGTGCATACCATCCCTAAAAA 59.638 40.000 0.00 0.00 0.00 1.94
583 585 6.041979 GGAATGTGCATACCATCCCTAAAAAT 59.958 38.462 0.00 0.00 0.00 1.82
584 586 7.418942 GGAATGTGCATACCATCCCTAAAAATT 60.419 37.037 0.00 0.00 0.00 1.82
585 587 6.865834 TGTGCATACCATCCCTAAAAATTT 57.134 33.333 0.00 0.00 0.00 1.82
586 588 6.872920 TGTGCATACCATCCCTAAAAATTTC 58.127 36.000 0.00 0.00 0.00 2.17
587 589 6.438741 TGTGCATACCATCCCTAAAAATTTCA 59.561 34.615 0.00 0.00 0.00 2.69
588 590 6.980397 GTGCATACCATCCCTAAAAATTTCAG 59.020 38.462 0.00 0.00 0.00 3.02
589 591 6.098124 TGCATACCATCCCTAAAAATTTCAGG 59.902 38.462 10.53 10.53 0.00 3.86
590 592 6.098266 GCATACCATCCCTAAAAATTTCAGGT 59.902 38.462 14.55 0.00 0.00 4.00
591 593 7.684428 GCATACCATCCCTAAAAATTTCAGGTC 60.684 40.741 14.55 0.00 0.00 3.85
592 594 5.023452 ACCATCCCTAAAAATTTCAGGTCC 58.977 41.667 14.55 0.00 0.00 4.46
593 595 5.022787 CCATCCCTAAAAATTTCAGGTCCA 58.977 41.667 14.55 2.99 0.00 4.02
594 596 5.483583 CCATCCCTAAAAATTTCAGGTCCAA 59.516 40.000 14.55 2.42 0.00 3.53
595 597 6.013812 CCATCCCTAAAAATTTCAGGTCCAAA 60.014 38.462 14.55 0.00 0.00 3.28
596 598 6.413783 TCCCTAAAAATTTCAGGTCCAAAC 57.586 37.500 14.55 0.00 0.00 2.93
597 599 6.140377 TCCCTAAAAATTTCAGGTCCAAACT 58.860 36.000 14.55 0.00 0.00 2.66
598 600 6.266786 TCCCTAAAAATTTCAGGTCCAAACTC 59.733 38.462 14.55 0.00 0.00 3.01
599 601 6.041523 CCCTAAAAATTTCAGGTCCAAACTCA 59.958 38.462 14.55 0.00 0.00 3.41
600 602 7.418483 CCCTAAAAATTTCAGGTCCAAACTCAA 60.418 37.037 14.55 0.00 0.00 3.02
601 603 7.984617 CCTAAAAATTTCAGGTCCAAACTCAAA 59.015 33.333 9.62 0.00 0.00 2.69
602 604 9.377312 CTAAAAATTTCAGGTCCAAACTCAAAA 57.623 29.630 0.00 0.00 0.00 2.44
603 605 7.609760 AAAATTTCAGGTCCAAACTCAAAAC 57.390 32.000 0.00 0.00 0.00 2.43
604 606 5.930837 ATTTCAGGTCCAAACTCAAAACA 57.069 34.783 0.00 0.00 0.00 2.83
605 607 4.712122 TTCAGGTCCAAACTCAAAACAC 57.288 40.909 0.00 0.00 0.00 3.32
606 608 3.691575 TCAGGTCCAAACTCAAAACACA 58.308 40.909 0.00 0.00 0.00 3.72
607 609 3.442273 TCAGGTCCAAACTCAAAACACAC 59.558 43.478 0.00 0.00 0.00 3.82
608 610 3.192422 CAGGTCCAAACTCAAAACACACA 59.808 43.478 0.00 0.00 0.00 3.72
609 611 4.023291 AGGTCCAAACTCAAAACACACAT 58.977 39.130 0.00 0.00 0.00 3.21
610 612 4.466015 AGGTCCAAACTCAAAACACACATT 59.534 37.500 0.00 0.00 0.00 2.71
611 613 4.566360 GGTCCAAACTCAAAACACACATTG 59.434 41.667 0.00 0.00 0.00 2.82
612 614 5.406649 GTCCAAACTCAAAACACACATTGA 58.593 37.500 0.00 0.00 34.57 2.57
621 623 7.953158 TCAAAACACACATTGAGAAACAAAA 57.047 28.000 0.00 0.00 42.03 2.44
622 624 8.370493 TCAAAACACACATTGAGAAACAAAAA 57.630 26.923 0.00 0.00 42.03 1.94
623 625 8.997323 TCAAAACACACATTGAGAAACAAAAAT 58.003 25.926 0.00 0.00 42.03 1.82
624 626 9.053135 CAAAACACACATTGAGAAACAAAAATG 57.947 29.630 0.00 0.00 42.03 2.32
625 627 7.903995 AACACACATTGAGAAACAAAAATGT 57.096 28.000 0.00 0.00 42.45 2.71
632 634 9.603921 ACATTGAGAAACAAAAATGTGAAATCT 57.396 25.926 0.00 0.00 40.71 2.40
668 670 9.930693 AGTGTAAATAAAAAGACCAAAACAACA 57.069 25.926 0.00 0.00 0.00 3.33
669 671 9.961266 GTGTAAATAAAAAGACCAAAACAACAC 57.039 29.630 0.00 0.00 0.00 3.32
670 672 9.930693 TGTAAATAAAAAGACCAAAACAACACT 57.069 25.926 0.00 0.00 0.00 3.55
673 675 8.474006 AATAAAAAGACCAAAACAACACTGAC 57.526 30.769 0.00 0.00 0.00 3.51
674 676 5.461032 AAAAGACCAAAACAACACTGACA 57.539 34.783 0.00 0.00 0.00 3.58
675 677 4.434713 AAGACCAAAACAACACTGACAC 57.565 40.909 0.00 0.00 0.00 3.67
676 678 3.686016 AGACCAAAACAACACTGACACT 58.314 40.909 0.00 0.00 0.00 3.55
677 679 4.839121 AGACCAAAACAACACTGACACTA 58.161 39.130 0.00 0.00 0.00 2.74
678 680 5.437060 AGACCAAAACAACACTGACACTAT 58.563 37.500 0.00 0.00 0.00 2.12
679 681 5.885912 AGACCAAAACAACACTGACACTATT 59.114 36.000 0.00 0.00 0.00 1.73
680 682 6.038271 AGACCAAAACAACACTGACACTATTC 59.962 38.462 0.00 0.00 0.00 1.75
681 683 5.650266 ACCAAAACAACACTGACACTATTCA 59.350 36.000 0.00 0.00 0.00 2.57
682 684 5.971202 CCAAAACAACACTGACACTATTCAC 59.029 40.000 0.00 0.00 0.00 3.18
683 685 6.404184 CCAAAACAACACTGACACTATTCACA 60.404 38.462 0.00 0.00 0.00 3.58
684 686 5.734855 AACAACACTGACACTATTCACAC 57.265 39.130 0.00 0.00 0.00 3.82
685 687 4.127171 ACAACACTGACACTATTCACACC 58.873 43.478 0.00 0.00 0.00 4.16
686 688 4.141711 ACAACACTGACACTATTCACACCT 60.142 41.667 0.00 0.00 0.00 4.00
687 689 3.995199 ACACTGACACTATTCACACCTG 58.005 45.455 0.00 0.00 0.00 4.00
688 690 3.244215 ACACTGACACTATTCACACCTGG 60.244 47.826 0.00 0.00 0.00 4.45
689 691 3.006859 CACTGACACTATTCACACCTGGA 59.993 47.826 0.00 0.00 0.00 3.86
690 692 3.840666 ACTGACACTATTCACACCTGGAT 59.159 43.478 0.00 0.00 0.00 3.41
691 693 4.287067 ACTGACACTATTCACACCTGGATT 59.713 41.667 0.00 0.00 0.00 3.01
692 694 5.221925 ACTGACACTATTCACACCTGGATTT 60.222 40.000 0.00 0.00 0.00 2.17
693 695 5.003160 TGACACTATTCACACCTGGATTTG 58.997 41.667 0.00 0.00 0.00 2.32
694 696 4.985538 ACACTATTCACACCTGGATTTGT 58.014 39.130 0.00 0.00 0.00 2.83
695 697 5.003804 ACACTATTCACACCTGGATTTGTC 58.996 41.667 0.00 0.00 0.00 3.18
696 698 5.221925 ACACTATTCACACCTGGATTTGTCT 60.222 40.000 0.00 0.00 0.00 3.41
697 699 5.707298 CACTATTCACACCTGGATTTGTCTT 59.293 40.000 0.00 0.00 0.00 3.01
698 700 6.207417 CACTATTCACACCTGGATTTGTCTTT 59.793 38.462 0.00 0.00 0.00 2.52
699 701 6.777580 ACTATTCACACCTGGATTTGTCTTTT 59.222 34.615 0.00 0.00 0.00 2.27
700 702 5.930837 TTCACACCTGGATTTGTCTTTTT 57.069 34.783 0.00 0.00 0.00 1.94
721 723 5.886715 TTTGTTTCTCAATGTGCATTTCG 57.113 34.783 0.00 0.00 35.84 3.46
722 724 4.827304 TGTTTCTCAATGTGCATTTCGA 57.173 36.364 0.00 0.00 0.00 3.71
723 725 5.375417 TGTTTCTCAATGTGCATTTCGAT 57.625 34.783 0.00 0.00 0.00 3.59
724 726 5.771469 TGTTTCTCAATGTGCATTTCGATT 58.229 33.333 0.00 0.00 0.00 3.34
725 727 6.215121 TGTTTCTCAATGTGCATTTCGATTT 58.785 32.000 0.00 0.00 0.00 2.17
726 728 6.700960 TGTTTCTCAATGTGCATTTCGATTTT 59.299 30.769 0.00 0.00 0.00 1.82
727 729 6.693761 TTCTCAATGTGCATTTCGATTTTG 57.306 33.333 0.00 0.00 0.00 2.44
728 730 5.162794 TCTCAATGTGCATTTCGATTTTGG 58.837 37.500 0.00 0.00 0.00 3.28
729 731 5.048154 TCTCAATGTGCATTTCGATTTTGGA 60.048 36.000 0.00 0.00 0.00 3.53
730 732 4.922692 TCAATGTGCATTTCGATTTTGGAC 59.077 37.500 0.00 7.24 32.96 4.02
731 733 4.789012 ATGTGCATTTCGATTTTGGACT 57.211 36.364 12.98 0.90 33.44 3.85
732 734 4.582701 TGTGCATTTCGATTTTGGACTT 57.417 36.364 12.98 0.00 33.44 3.01
733 735 4.297510 TGTGCATTTCGATTTTGGACTTG 58.702 39.130 12.98 0.00 33.44 3.16
734 736 4.037327 TGTGCATTTCGATTTTGGACTTGA 59.963 37.500 12.98 0.00 33.44 3.02
735 737 4.981674 GTGCATTTCGATTTTGGACTTGAA 59.018 37.500 0.00 0.00 0.00 2.69
736 738 5.461737 GTGCATTTCGATTTTGGACTTGAAA 59.538 36.000 0.00 0.00 31.20 2.69
737 739 6.146021 GTGCATTTCGATTTTGGACTTGAAAT 59.854 34.615 0.00 0.00 36.40 2.17
738 740 6.705381 TGCATTTCGATTTTGGACTTGAAATT 59.295 30.769 0.00 0.00 34.64 1.82
739 741 7.226325 TGCATTTCGATTTTGGACTTGAAATTT 59.774 29.630 0.00 0.00 34.64 1.82
740 742 8.069574 GCATTTCGATTTTGGACTTGAAATTTT 58.930 29.630 0.00 0.00 34.64 1.82
741 743 9.934190 CATTTCGATTTTGGACTTGAAATTTTT 57.066 25.926 0.00 0.00 34.64 1.94
744 746 8.810652 TCGATTTTGGACTTGAAATTTTTAGG 57.189 30.769 0.00 0.00 0.00 2.69
745 747 8.634444 TCGATTTTGGACTTGAAATTTTTAGGA 58.366 29.630 0.00 0.00 0.00 2.94
746 748 8.915654 CGATTTTGGACTTGAAATTTTTAGGAG 58.084 33.333 0.00 0.00 0.00 3.69
747 749 9.764363 GATTTTGGACTTGAAATTTTTAGGAGT 57.236 29.630 0.00 0.00 0.00 3.85
748 750 9.764363 ATTTTGGACTTGAAATTTTTAGGAGTC 57.236 29.630 0.00 2.61 33.19 3.36
749 751 6.554334 TGGACTTGAAATTTTTAGGAGTCG 57.446 37.500 0.00 0.00 34.40 4.18
750 752 6.059484 TGGACTTGAAATTTTTAGGAGTCGT 58.941 36.000 0.00 0.00 34.40 4.34
751 753 7.218614 TGGACTTGAAATTTTTAGGAGTCGTA 58.781 34.615 0.00 0.00 34.40 3.43
752 754 7.386848 TGGACTTGAAATTTTTAGGAGTCGTAG 59.613 37.037 0.00 0.00 34.40 3.51
753 755 7.387122 GGACTTGAAATTTTTAGGAGTCGTAGT 59.613 37.037 0.00 0.00 34.40 2.73
754 756 8.307921 ACTTGAAATTTTTAGGAGTCGTAGTC 57.692 34.615 0.00 0.00 0.00 2.59
755 757 7.929785 ACTTGAAATTTTTAGGAGTCGTAGTCA 59.070 33.333 0.00 0.00 0.00 3.41
756 758 8.842358 TTGAAATTTTTAGGAGTCGTAGTCAT 57.158 30.769 0.00 0.00 0.00 3.06
757 759 9.932207 TTGAAATTTTTAGGAGTCGTAGTCATA 57.068 29.630 0.00 0.00 0.00 2.15
761 763 9.543783 AATTTTTAGGAGTCGTAGTCATATTCC 57.456 33.333 0.00 0.00 0.00 3.01
762 764 6.645790 TTTAGGAGTCGTAGTCATATTCCC 57.354 41.667 0.00 0.00 0.00 3.97
763 765 4.456662 AGGAGTCGTAGTCATATTCCCT 57.543 45.455 0.00 0.00 0.00 4.20
764 766 5.579753 AGGAGTCGTAGTCATATTCCCTA 57.420 43.478 0.00 0.00 0.00 3.53
765 767 6.142259 AGGAGTCGTAGTCATATTCCCTAT 57.858 41.667 0.00 0.00 0.00 2.57
766 768 6.181908 AGGAGTCGTAGTCATATTCCCTATC 58.818 44.000 0.00 0.00 0.00 2.08
767 769 5.944599 GGAGTCGTAGTCATATTCCCTATCA 59.055 44.000 0.00 0.00 0.00 2.15
768 770 6.433404 GGAGTCGTAGTCATATTCCCTATCAA 59.567 42.308 0.00 0.00 0.00 2.57
769 771 7.216973 AGTCGTAGTCATATTCCCTATCAAC 57.783 40.000 0.00 0.00 0.00 3.18
770 772 6.776116 AGTCGTAGTCATATTCCCTATCAACA 59.224 38.462 0.00 0.00 0.00 3.33
771 773 7.451877 AGTCGTAGTCATATTCCCTATCAACAT 59.548 37.037 0.00 0.00 0.00 2.71
772 774 8.088981 GTCGTAGTCATATTCCCTATCAACATT 58.911 37.037 0.00 0.00 0.00 2.71
773 775 8.304596 TCGTAGTCATATTCCCTATCAACATTC 58.695 37.037 0.00 0.00 0.00 2.67
774 776 8.088365 CGTAGTCATATTCCCTATCAACATTCA 58.912 37.037 0.00 0.00 0.00 2.57
775 777 9.429359 GTAGTCATATTCCCTATCAACATTCAG 57.571 37.037 0.00 0.00 0.00 3.02
776 778 8.267620 AGTCATATTCCCTATCAACATTCAGA 57.732 34.615 0.00 0.00 0.00 3.27
777 779 8.888419 AGTCATATTCCCTATCAACATTCAGAT 58.112 33.333 0.00 0.00 0.00 2.90
778 780 9.512588 GTCATATTCCCTATCAACATTCAGATT 57.487 33.333 0.00 0.00 0.00 2.40
779 781 9.730705 TCATATTCCCTATCAACATTCAGATTC 57.269 33.333 0.00 0.00 0.00 2.52
780 782 9.736414 CATATTCCCTATCAACATTCAGATTCT 57.264 33.333 0.00 0.00 0.00 2.40
783 785 8.884124 TTCCCTATCAACATTCAGATTCTTTT 57.116 30.769 0.00 0.00 0.00 2.27
784 786 8.884124 TCCCTATCAACATTCAGATTCTTTTT 57.116 30.769 0.00 0.00 0.00 1.94
833 835 9.559958 AAATATTCTTTTTGACATTAGAGCACG 57.440 29.630 0.00 0.00 0.00 5.34
834 836 5.356882 TTCTTTTTGACATTAGAGCACGG 57.643 39.130 0.00 0.00 0.00 4.94
835 837 3.751175 TCTTTTTGACATTAGAGCACGGG 59.249 43.478 0.00 0.00 0.00 5.28
836 838 3.410631 TTTTGACATTAGAGCACGGGA 57.589 42.857 0.00 0.00 0.00 5.14
837 839 3.410631 TTTGACATTAGAGCACGGGAA 57.589 42.857 0.00 0.00 0.00 3.97
838 840 2.672961 TGACATTAGAGCACGGGAAG 57.327 50.000 0.00 0.00 0.00 3.46
839 841 1.899814 TGACATTAGAGCACGGGAAGT 59.100 47.619 0.00 0.00 0.00 3.01
840 842 3.093814 TGACATTAGAGCACGGGAAGTA 58.906 45.455 0.00 0.00 0.00 2.24
841 843 3.119245 TGACATTAGAGCACGGGAAGTAC 60.119 47.826 0.00 0.00 0.00 2.73
842 844 2.167900 ACATTAGAGCACGGGAAGTACC 59.832 50.000 0.00 0.00 38.08 3.34
852 854 1.303282 GGAAGTACCCCAAGGCTGG 59.697 63.158 0.00 0.00 43.10 4.85
853 855 1.205460 GGAAGTACCCCAAGGCTGGA 61.205 60.000 4.77 0.00 46.92 3.86
854 856 0.253327 GAAGTACCCCAAGGCTGGAG 59.747 60.000 4.77 0.00 46.92 3.86
855 857 1.853250 AAGTACCCCAAGGCTGGAGC 61.853 60.000 4.77 0.00 46.92 4.70
856 858 2.204074 TACCCCAAGGCTGGAGCA 60.204 61.111 0.20 0.00 46.92 4.26
857 859 2.602676 TACCCCAAGGCTGGAGCAC 61.603 63.158 0.20 0.00 46.92 4.40
858 860 4.748144 CCCCAAGGCTGGAGCACC 62.748 72.222 0.20 0.00 46.92 5.01
859 861 3.655211 CCCAAGGCTGGAGCACCT 61.655 66.667 0.71 0.00 46.92 4.00
860 862 2.360852 CCAAGGCTGGAGCACCTG 60.361 66.667 0.71 1.73 46.92 4.00
861 863 2.752358 CAAGGCTGGAGCACCTGA 59.248 61.111 11.22 0.00 44.36 3.86
862 864 1.302285 CAAGGCTGGAGCACCTGAT 59.698 57.895 11.22 0.00 44.36 2.90
863 865 0.543277 CAAGGCTGGAGCACCTGATA 59.457 55.000 11.22 0.00 44.36 2.15
864 866 0.543749 AAGGCTGGAGCACCTGATAC 59.456 55.000 11.22 0.75 44.36 2.24
865 867 0.326048 AGGCTGGAGCACCTGATACT 60.326 55.000 11.22 2.94 44.36 2.12
866 868 0.543749 GGCTGGAGCACCTGATACTT 59.456 55.000 11.22 0.00 44.36 2.24
867 869 1.065126 GGCTGGAGCACCTGATACTTT 60.065 52.381 11.22 0.00 44.36 2.66
868 870 2.284190 GCTGGAGCACCTGATACTTTC 58.716 52.381 11.22 0.00 41.59 2.62
869 871 2.911484 CTGGAGCACCTGATACTTTCC 58.089 52.381 0.71 0.00 37.31 3.13
870 872 1.559682 TGGAGCACCTGATACTTTCCC 59.440 52.381 0.71 0.00 37.04 3.97
924 926 4.981812 TGGAAAACTAGTCTTTCTTCCCC 58.018 43.478 20.23 11.15 33.99 4.81
925 927 4.414182 TGGAAAACTAGTCTTTCTTCCCCA 59.586 41.667 20.23 12.73 33.99 4.96
1561 1563 0.032130 GCGGCAGATCAATCTCGGTA 59.968 55.000 0.00 0.00 34.22 4.02
1752 1774 3.041940 CTTGGTGTGCCGACGGTC 61.042 66.667 16.73 8.54 37.67 4.79
1800 1822 2.483363 CGAGGTAGCTTCGTCTCTCCTA 60.483 54.545 10.69 0.00 33.57 2.94
2042 2064 6.369629 TCCAAAGAAAAGACCTGTTATTCCA 58.630 36.000 0.00 0.00 0.00 3.53
2049 2071 5.841957 AAGACCTGTTATTCCATTGATGC 57.158 39.130 0.00 0.00 0.00 3.91
2078 2100 0.249073 CAGCTGAACCGATCTACCCG 60.249 60.000 8.42 0.00 0.00 5.28
2159 2181 0.916358 AGGGCCTACATGCTCCTGTT 60.916 55.000 2.82 0.00 32.74 3.16
2171 2193 2.358898 TGCTCCTGTTTTGACAAAGCTC 59.641 45.455 14.74 5.03 32.76 4.09
2185 2207 2.678336 CAAAGCTCGGTAATCCTTGTCC 59.322 50.000 0.00 0.00 0.00 4.02
2187 2209 0.831307 GCTCGGTAATCCTTGTCCCT 59.169 55.000 0.00 0.00 0.00 4.20
2193 2215 3.681874 CGGTAATCCTTGTCCCTCCTTTC 60.682 52.174 0.00 0.00 0.00 2.62
2194 2216 3.371702 GGTAATCCTTGTCCCTCCTTTCC 60.372 52.174 0.00 0.00 0.00 3.13
2196 2218 1.198759 TCCTTGTCCCTCCTTTCCGG 61.199 60.000 0.00 0.00 0.00 5.14
2205 2227 2.420129 CCCTCCTTTCCGGTTAGACATG 60.420 54.545 0.00 0.00 0.00 3.21
2286 2310 8.570488 CACAGCAAAGAATGGATATTATGCTAA 58.430 33.333 0.00 0.00 38.06 3.09
2303 2327 1.135527 CTAACCTCGTGCCGATGGTTA 59.864 52.381 21.86 21.86 41.57 2.85
2335 2359 0.810648 TGGCTGATGAATTGGTTCGC 59.189 50.000 0.00 0.00 37.15 4.70
2417 2445 6.661377 GGTGAGTCTCTCATATAGCCTTATGA 59.339 42.308 0.65 6.16 42.73 2.15
2422 2450 8.364142 AGTCTCTCATATAGCCTTATGACAAAC 58.636 37.037 2.83 2.54 34.46 2.93
2433 2466 7.762382 AGCCTTATGACAAACTAGTTAAATGC 58.238 34.615 8.92 4.47 0.00 3.56
2516 2549 4.938226 CAGGACCTTGTTCCTTGTATTCTC 59.062 45.833 0.00 0.00 44.22 2.87
2586 2619 7.727186 ACCATGATGAAAGCATACAGGATAATT 59.273 33.333 0.00 0.00 43.92 1.40
2594 2627 6.720112 AGCATACAGGATAATTTGCACAAT 57.280 33.333 0.00 0.00 32.66 2.71
2607 2640 2.973694 GCACAATGCATTCCCTTCAT 57.026 45.000 9.53 0.00 44.26 2.57
2802 2835 4.717280 AGTAGGACATTTCCAGGGTAGAAG 59.283 45.833 0.00 0.00 45.72 2.85
2810 2843 5.952347 TTTCCAGGGTAGAAGATCCTTAC 57.048 43.478 0.00 0.00 0.00 2.34
2813 2846 5.538877 TCCAGGGTAGAAGATCCTTACATT 58.461 41.667 0.00 0.00 0.00 2.71
2939 2972 6.145534 TGTTCTATCACTAGTCGCAACAAAAG 59.854 38.462 0.00 0.00 0.00 2.27
2960 2993 2.758736 CAGTAGCCTTGCTTCTGTCT 57.241 50.000 12.79 0.00 44.90 3.41
2999 3032 5.772672 TGGCTAGTTTTTGGTGATTGTACAT 59.227 36.000 0.00 0.00 0.00 2.29
3018 3051 2.404923 TGTTTGTTCACTTCCACGGA 57.595 45.000 0.00 0.00 0.00 4.69
3033 3066 3.646162 TCCACGGATTGGCTATAGTTGAT 59.354 43.478 0.84 0.00 46.47 2.57
3051 3084 7.766219 AGTTGATATTCAAATCAAGCAATGC 57.234 32.000 0.00 0.00 44.39 3.56
3387 5922 5.465724 CACCAACAGTTACTAGTCAGGTTTC 59.534 44.000 0.00 0.00 0.00 2.78
3398 5933 7.981102 ACTAGTCAGGTTTCTTTATTTCCAC 57.019 36.000 0.00 0.00 0.00 4.02
3454 5991 0.324943 TAGCTTGAGGGTCCAACAGC 59.675 55.000 0.00 0.00 0.00 4.40
3571 6108 7.212976 GTCATTTGACTTCCTAGAGCATCATA 58.787 38.462 3.45 0.00 41.65 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.127491 ACCCAAAATCGAGAAACACTACAA 58.873 37.500 0.00 0.00 0.00 2.41
1 2 4.710324 ACCCAAAATCGAGAAACACTACA 58.290 39.130 0.00 0.00 0.00 2.74
2 3 6.203338 TGTTACCCAAAATCGAGAAACACTAC 59.797 38.462 0.00 0.00 0.00 2.73
3 4 6.289834 TGTTACCCAAAATCGAGAAACACTA 58.710 36.000 0.00 0.00 0.00 2.74
4 5 5.127491 TGTTACCCAAAATCGAGAAACACT 58.873 37.500 0.00 0.00 0.00 3.55
5 6 5.427036 TGTTACCCAAAATCGAGAAACAC 57.573 39.130 0.00 0.00 0.00 3.32
6 7 6.267070 GTTTGTTACCCAAAATCGAGAAACA 58.733 36.000 0.00 0.00 44.36 2.83
7 8 5.688621 GGTTTGTTACCCAAAATCGAGAAAC 59.311 40.000 0.00 0.00 44.36 2.78
8 9 5.834169 GGTTTGTTACCCAAAATCGAGAAA 58.166 37.500 0.00 0.00 44.36 2.52
9 10 5.441709 GGTTTGTTACCCAAAATCGAGAA 57.558 39.130 0.00 0.00 44.36 2.87
21 22 1.541147 GGCGGGTAAAGGTTTGTTACC 59.459 52.381 5.02 5.02 46.65 2.85
22 23 2.227149 CTGGCGGGTAAAGGTTTGTTAC 59.773 50.000 0.00 0.00 0.00 2.50
23 24 2.106166 TCTGGCGGGTAAAGGTTTGTTA 59.894 45.455 0.00 0.00 0.00 2.41
24 25 1.133730 TCTGGCGGGTAAAGGTTTGTT 60.134 47.619 0.00 0.00 0.00 2.83
25 26 0.475044 TCTGGCGGGTAAAGGTTTGT 59.525 50.000 0.00 0.00 0.00 2.83
26 27 1.165270 CTCTGGCGGGTAAAGGTTTG 58.835 55.000 0.00 0.00 0.00 2.93
27 28 1.003233 CTCTCTGGCGGGTAAAGGTTT 59.997 52.381 0.00 0.00 0.00 3.27
28 29 0.613777 CTCTCTGGCGGGTAAAGGTT 59.386 55.000 0.00 0.00 0.00 3.50
29 30 0.544595 ACTCTCTGGCGGGTAAAGGT 60.545 55.000 0.00 0.00 0.00 3.50
30 31 0.613777 AACTCTCTGGCGGGTAAAGG 59.386 55.000 0.00 0.00 0.00 3.11
31 32 2.076863 CAAACTCTCTGGCGGGTAAAG 58.923 52.381 0.00 0.00 0.00 1.85
32 33 1.695242 TCAAACTCTCTGGCGGGTAAA 59.305 47.619 0.00 0.00 0.00 2.01
33 34 1.275291 CTCAAACTCTCTGGCGGGTAA 59.725 52.381 0.00 0.00 0.00 2.85
34 35 0.895530 CTCAAACTCTCTGGCGGGTA 59.104 55.000 0.00 0.00 0.00 3.69
35 36 1.674057 CTCAAACTCTCTGGCGGGT 59.326 57.895 0.00 0.00 0.00 5.28
36 37 1.078848 CCTCAAACTCTCTGGCGGG 60.079 63.158 0.00 0.00 0.00 6.13
37 38 0.539051 ATCCTCAAACTCTCTGGCGG 59.461 55.000 0.00 0.00 0.00 6.13
38 39 3.526931 TTATCCTCAAACTCTCTGGCG 57.473 47.619 0.00 0.00 0.00 5.69
39 40 5.449725 GCATTTTATCCTCAAACTCTCTGGC 60.450 44.000 0.00 0.00 0.00 4.85
40 41 5.220739 CGCATTTTATCCTCAAACTCTCTGG 60.221 44.000 0.00 0.00 0.00 3.86
41 42 5.352569 ACGCATTTTATCCTCAAACTCTCTG 59.647 40.000 0.00 0.00 0.00 3.35
42 43 5.491982 ACGCATTTTATCCTCAAACTCTCT 58.508 37.500 0.00 0.00 0.00 3.10
43 44 5.803020 ACGCATTTTATCCTCAAACTCTC 57.197 39.130 0.00 0.00 0.00 3.20
44 45 7.770897 AGATTACGCATTTTATCCTCAAACTCT 59.229 33.333 0.00 0.00 0.00 3.24
45 46 7.920738 AGATTACGCATTTTATCCTCAAACTC 58.079 34.615 0.00 0.00 0.00 3.01
46 47 7.865706 AGATTACGCATTTTATCCTCAAACT 57.134 32.000 0.00 0.00 0.00 2.66
47 48 8.398665 AGAAGATTACGCATTTTATCCTCAAAC 58.601 33.333 0.00 0.00 0.00 2.93
48 49 8.506168 AGAAGATTACGCATTTTATCCTCAAA 57.494 30.769 0.00 0.00 0.00 2.69
49 50 7.042725 CGAGAAGATTACGCATTTTATCCTCAA 60.043 37.037 0.00 0.00 0.00 3.02
50 51 6.420903 CGAGAAGATTACGCATTTTATCCTCA 59.579 38.462 0.00 0.00 0.00 3.86
51 52 6.641314 TCGAGAAGATTACGCATTTTATCCTC 59.359 38.462 0.00 0.00 0.00 3.71
52 53 6.513180 TCGAGAAGATTACGCATTTTATCCT 58.487 36.000 0.00 0.00 0.00 3.24
53 54 6.764877 TCGAGAAGATTACGCATTTTATCC 57.235 37.500 0.00 0.00 0.00 2.59
67 68 7.505585 ACTCAATCCTCTAGAAATCGAGAAGAT 59.494 37.037 8.88 0.45 42.43 2.40
68 69 6.831353 ACTCAATCCTCTAGAAATCGAGAAGA 59.169 38.462 8.88 0.00 0.00 2.87
69 70 7.038154 ACTCAATCCTCTAGAAATCGAGAAG 57.962 40.000 8.88 0.00 0.00 2.85
70 71 7.993758 TCTACTCAATCCTCTAGAAATCGAGAA 59.006 37.037 8.88 0.00 0.00 2.87
71 72 7.510407 TCTACTCAATCCTCTAGAAATCGAGA 58.490 38.462 8.88 0.00 0.00 4.04
72 73 7.659799 TCTCTACTCAATCCTCTAGAAATCGAG 59.340 40.741 0.00 0.00 0.00 4.04
73 74 7.510407 TCTCTACTCAATCCTCTAGAAATCGA 58.490 38.462 0.00 0.00 0.00 3.59
74 75 7.737972 TCTCTACTCAATCCTCTAGAAATCG 57.262 40.000 0.00 0.00 0.00 3.34
75 76 9.965824 CTTTCTCTACTCAATCCTCTAGAAATC 57.034 37.037 0.00 0.00 32.89 2.17
76 77 9.487442 ACTTTCTCTACTCAATCCTCTAGAAAT 57.513 33.333 0.00 0.00 32.89 2.17
77 78 8.744652 CACTTTCTCTACTCAATCCTCTAGAAA 58.255 37.037 0.00 0.00 32.50 2.52
78 79 7.340743 CCACTTTCTCTACTCAATCCTCTAGAA 59.659 40.741 0.00 0.00 0.00 2.10
79 80 6.831353 CCACTTTCTCTACTCAATCCTCTAGA 59.169 42.308 0.00 0.00 0.00 2.43
80 81 6.831353 TCCACTTTCTCTACTCAATCCTCTAG 59.169 42.308 0.00 0.00 0.00 2.43
81 82 6.732487 TCCACTTTCTCTACTCAATCCTCTA 58.268 40.000 0.00 0.00 0.00 2.43
82 83 5.584913 TCCACTTTCTCTACTCAATCCTCT 58.415 41.667 0.00 0.00 0.00 3.69
83 84 5.654650 TCTCCACTTTCTCTACTCAATCCTC 59.345 44.000 0.00 0.00 0.00 3.71
84 85 5.584913 TCTCCACTTTCTCTACTCAATCCT 58.415 41.667 0.00 0.00 0.00 3.24
85 86 5.654650 TCTCTCCACTTTCTCTACTCAATCC 59.345 44.000 0.00 0.00 0.00 3.01
86 87 6.601613 TCTCTCTCCACTTTCTCTACTCAATC 59.398 42.308 0.00 0.00 0.00 2.67
87 88 6.489603 TCTCTCTCCACTTTCTCTACTCAAT 58.510 40.000 0.00 0.00 0.00 2.57
88 89 5.882040 TCTCTCTCCACTTTCTCTACTCAA 58.118 41.667 0.00 0.00 0.00 3.02
89 90 5.496556 CTCTCTCTCCACTTTCTCTACTCA 58.503 45.833 0.00 0.00 0.00 3.41
90 91 4.881850 CCTCTCTCTCCACTTTCTCTACTC 59.118 50.000 0.00 0.00 0.00 2.59
91 92 4.855340 CCTCTCTCTCCACTTTCTCTACT 58.145 47.826 0.00 0.00 0.00 2.57
92 93 3.380320 GCCTCTCTCTCCACTTTCTCTAC 59.620 52.174 0.00 0.00 0.00 2.59
93 94 3.626222 GGCCTCTCTCTCCACTTTCTCTA 60.626 52.174 0.00 0.00 0.00 2.43
94 95 2.456577 GCCTCTCTCTCCACTTTCTCT 58.543 52.381 0.00 0.00 0.00 3.10
95 96 1.480545 GGCCTCTCTCTCCACTTTCTC 59.519 57.143 0.00 0.00 0.00 2.87
96 97 1.567357 GGCCTCTCTCTCCACTTTCT 58.433 55.000 0.00 0.00 0.00 2.52
97 98 0.174617 CGGCCTCTCTCTCCACTTTC 59.825 60.000 0.00 0.00 0.00 2.62
98 99 0.251832 TCGGCCTCTCTCTCCACTTT 60.252 55.000 0.00 0.00 0.00 2.66
99 100 0.251832 TTCGGCCTCTCTCTCCACTT 60.252 55.000 0.00 0.00 0.00 3.16
100 101 0.682855 CTTCGGCCTCTCTCTCCACT 60.683 60.000 0.00 0.00 0.00 4.00
101 102 1.671901 CCTTCGGCCTCTCTCTCCAC 61.672 65.000 0.00 0.00 0.00 4.02
102 103 1.380515 CCTTCGGCCTCTCTCTCCA 60.381 63.158 0.00 0.00 0.00 3.86
103 104 1.380650 ACCTTCGGCCTCTCTCTCC 60.381 63.158 0.00 0.00 0.00 3.71
104 105 1.813192 CACCTTCGGCCTCTCTCTC 59.187 63.158 0.00 0.00 0.00 3.20
105 106 2.355193 GCACCTTCGGCCTCTCTCT 61.355 63.158 0.00 0.00 0.00 3.10
106 107 2.185608 GCACCTTCGGCCTCTCTC 59.814 66.667 0.00 0.00 0.00 3.20
107 108 2.604686 TGCACCTTCGGCCTCTCT 60.605 61.111 0.00 0.00 0.00 3.10
108 109 2.435059 GTGCACCTTCGGCCTCTC 60.435 66.667 5.22 0.00 0.00 3.20
109 110 4.021925 GGTGCACCTTCGGCCTCT 62.022 66.667 29.12 0.00 0.00 3.69
110 111 4.329545 TGGTGCACCTTCGGCCTC 62.330 66.667 34.75 7.22 36.82 4.70
111 112 4.335647 CTGGTGCACCTTCGGCCT 62.336 66.667 34.75 0.00 36.82 5.19
112 113 3.628646 ATCTGGTGCACCTTCGGCC 62.629 63.158 34.75 8.97 36.82 6.13
113 114 1.244019 AAATCTGGTGCACCTTCGGC 61.244 55.000 34.75 9.52 36.82 5.54
114 115 1.247567 AAAATCTGGTGCACCTTCGG 58.752 50.000 34.75 21.37 36.82 4.30
115 116 2.293122 TGAAAAATCTGGTGCACCTTCG 59.707 45.455 34.75 22.61 36.82 3.79
116 117 4.320608 TTGAAAAATCTGGTGCACCTTC 57.679 40.909 34.75 26.89 36.82 3.46
117 118 4.751767 TTTGAAAAATCTGGTGCACCTT 57.248 36.364 34.75 20.51 36.82 3.50
118 119 4.443315 CCTTTTGAAAAATCTGGTGCACCT 60.443 41.667 34.75 14.54 36.82 4.00
119 120 3.809279 CCTTTTGAAAAATCTGGTGCACC 59.191 43.478 29.67 29.67 0.00 5.01
120 121 3.248363 GCCTTTTGAAAAATCTGGTGCAC 59.752 43.478 8.80 8.80 0.00 4.57
121 122 3.134442 AGCCTTTTGAAAAATCTGGTGCA 59.866 39.130 0.00 0.00 0.00 4.57
122 123 3.732212 AGCCTTTTGAAAAATCTGGTGC 58.268 40.909 0.00 0.00 0.00 5.01
123 124 5.205759 AGAGCCTTTTGAAAAATCTGGTG 57.794 39.130 0.00 0.00 0.00 4.17
124 125 6.015940 CACTAGAGCCTTTTGAAAAATCTGGT 60.016 38.462 0.00 9.06 31.02 4.00
125 126 6.015940 ACACTAGAGCCTTTTGAAAAATCTGG 60.016 38.462 0.00 8.53 0.00 3.86
126 127 6.974965 ACACTAGAGCCTTTTGAAAAATCTG 58.025 36.000 0.00 4.07 0.00 2.90
127 128 7.719633 TGTACACTAGAGCCTTTTGAAAAATCT 59.280 33.333 0.00 0.00 0.00 2.40
128 129 7.871853 TGTACACTAGAGCCTTTTGAAAAATC 58.128 34.615 0.00 0.00 0.00 2.17
129 130 7.817418 TGTACACTAGAGCCTTTTGAAAAAT 57.183 32.000 0.00 0.00 0.00 1.82
130 131 7.633193 TTGTACACTAGAGCCTTTTGAAAAA 57.367 32.000 0.00 0.00 0.00 1.94
131 132 7.633193 TTTGTACACTAGAGCCTTTTGAAAA 57.367 32.000 0.00 0.00 0.00 2.29
132 133 7.817418 ATTTGTACACTAGAGCCTTTTGAAA 57.183 32.000 0.00 0.00 0.00 2.69
133 134 7.500892 TGAATTTGTACACTAGAGCCTTTTGAA 59.499 33.333 0.00 0.00 0.00 2.69
134 135 6.995686 TGAATTTGTACACTAGAGCCTTTTGA 59.004 34.615 0.00 0.00 0.00 2.69
135 136 7.202016 TGAATTTGTACACTAGAGCCTTTTG 57.798 36.000 0.00 0.00 0.00 2.44
136 137 8.409358 AATGAATTTGTACACTAGAGCCTTTT 57.591 30.769 0.00 0.00 0.00 2.27
137 138 9.167311 CTAATGAATTTGTACACTAGAGCCTTT 57.833 33.333 0.00 0.00 0.00 3.11
138 139 7.770897 CCTAATGAATTTGTACACTAGAGCCTT 59.229 37.037 0.00 0.00 0.00 4.35
139 140 7.125811 TCCTAATGAATTTGTACACTAGAGCCT 59.874 37.037 0.00 0.00 0.00 4.58
140 141 7.272978 TCCTAATGAATTTGTACACTAGAGCC 58.727 38.462 0.00 0.00 0.00 4.70
141 142 8.894768 ATCCTAATGAATTTGTACACTAGAGC 57.105 34.615 0.00 0.00 0.00 4.09
145 146 9.391006 GGTTGATCCTAATGAATTTGTACACTA 57.609 33.333 0.00 0.00 0.00 2.74
146 147 8.109634 AGGTTGATCCTAATGAATTTGTACACT 58.890 33.333 0.00 0.00 46.10 3.55
147 148 8.281212 AGGTTGATCCTAATGAATTTGTACAC 57.719 34.615 0.00 0.00 46.10 2.90
160 161 8.556589 TGAAGGAATTTCATAGGTTGATCCTAA 58.443 33.333 0.00 0.00 39.45 2.69
161 162 8.101309 TGAAGGAATTTCATAGGTTGATCCTA 57.899 34.615 0.00 0.00 39.45 2.94
162 163 6.973642 TGAAGGAATTTCATAGGTTGATCCT 58.026 36.000 0.00 0.00 41.25 3.24
177 178 9.176460 ACAAAATGAAAACAACATGAAGGAATT 57.824 25.926 0.00 0.00 0.00 2.17
178 179 8.735692 ACAAAATGAAAACAACATGAAGGAAT 57.264 26.923 0.00 0.00 0.00 3.01
179 180 9.829507 ATACAAAATGAAAACAACATGAAGGAA 57.170 25.926 0.00 0.00 0.00 3.36
180 181 9.829507 AATACAAAATGAAAACAACATGAAGGA 57.170 25.926 0.00 0.00 0.00 3.36
181 182 9.866936 CAATACAAAATGAAAACAACATGAAGG 57.133 29.630 0.00 0.00 0.00 3.46
182 183 9.372541 GCAATACAAAATGAAAACAACATGAAG 57.627 29.630 0.00 0.00 0.00 3.02
183 184 8.060679 CGCAATACAAAATGAAAACAACATGAA 58.939 29.630 0.00 0.00 0.00 2.57
184 185 7.307042 CCGCAATACAAAATGAAAACAACATGA 60.307 33.333 0.00 0.00 0.00 3.07
185 186 6.791299 CCGCAATACAAAATGAAAACAACATG 59.209 34.615 0.00 0.00 0.00 3.21
186 187 6.481644 ACCGCAATACAAAATGAAAACAACAT 59.518 30.769 0.00 0.00 0.00 2.71
187 188 5.812642 ACCGCAATACAAAATGAAAACAACA 59.187 32.000 0.00 0.00 0.00 3.33
188 189 6.280537 ACCGCAATACAAAATGAAAACAAC 57.719 33.333 0.00 0.00 0.00 3.32
189 190 8.594881 AATACCGCAATACAAAATGAAAACAA 57.405 26.923 0.00 0.00 0.00 2.83
190 191 8.594881 AAATACCGCAATACAAAATGAAAACA 57.405 26.923 0.00 0.00 0.00 2.83
191 192 8.704234 TGAAATACCGCAATACAAAATGAAAAC 58.296 29.630 0.00 0.00 0.00 2.43
192 193 8.704234 GTGAAATACCGCAATACAAAATGAAAA 58.296 29.630 0.00 0.00 0.00 2.29
193 194 8.085296 AGTGAAATACCGCAATACAAAATGAAA 58.915 29.630 0.00 0.00 0.00 2.69
194 195 7.598278 AGTGAAATACCGCAATACAAAATGAA 58.402 30.769 0.00 0.00 0.00 2.57
195 196 7.151999 AGTGAAATACCGCAATACAAAATGA 57.848 32.000 0.00 0.00 0.00 2.57
196 197 7.810766 AAGTGAAATACCGCAATACAAAATG 57.189 32.000 0.00 0.00 0.00 2.32
197 198 8.303876 AGAAAGTGAAATACCGCAATACAAAAT 58.696 29.630 0.00 0.00 0.00 1.82
198 199 7.653647 AGAAAGTGAAATACCGCAATACAAAA 58.346 30.769 0.00 0.00 0.00 2.44
199 200 7.209471 AGAAAGTGAAATACCGCAATACAAA 57.791 32.000 0.00 0.00 0.00 2.83
200 201 6.811253 AGAAAGTGAAATACCGCAATACAA 57.189 33.333 0.00 0.00 0.00 2.41
201 202 6.811253 AAGAAAGTGAAATACCGCAATACA 57.189 33.333 0.00 0.00 0.00 2.29
202 203 9.859692 GTATAAGAAAGTGAAATACCGCAATAC 57.140 33.333 0.00 0.00 0.00 1.89
203 204 9.602568 TGTATAAGAAAGTGAAATACCGCAATA 57.397 29.630 0.00 0.00 0.00 1.90
204 205 8.500753 TGTATAAGAAAGTGAAATACCGCAAT 57.499 30.769 0.00 0.00 0.00 3.56
205 206 7.908827 TGTATAAGAAAGTGAAATACCGCAA 57.091 32.000 0.00 0.00 0.00 4.85
206 207 7.908827 TTGTATAAGAAAGTGAAATACCGCA 57.091 32.000 0.00 0.00 0.00 5.69
207 208 9.859692 GTATTGTATAAGAAAGTGAAATACCGC 57.140 33.333 0.00 0.00 0.00 5.68
265 266 9.944376 AGAGTAATTCTAGCAGAAATAAACACA 57.056 29.630 3.27 0.00 37.82 3.72
320 321 4.677832 GTGTTCGTGAGTGTTTTGTTTGTT 59.322 37.500 0.00 0.00 0.00 2.83
321 322 4.223659 GTGTTCGTGAGTGTTTTGTTTGT 58.776 39.130 0.00 0.00 0.00 2.83
331 332 1.597663 GAACCCTTGTGTTCGTGAGTG 59.402 52.381 0.00 0.00 35.70 3.51
379 381 3.118038 TGATTTACACCCCTATGAGCACC 60.118 47.826 0.00 0.00 0.00 5.01
439 441 2.480845 GATATTTTCCCCGAGGACGTG 58.519 52.381 0.00 0.00 43.90 4.49
440 442 1.068127 CGATATTTTCCCCGAGGACGT 59.932 52.381 0.00 0.00 43.90 4.34
441 443 1.604693 CCGATATTTTCCCCGAGGACG 60.605 57.143 0.00 0.00 43.90 4.79
442 444 1.270678 CCCGATATTTTCCCCGAGGAC 60.271 57.143 0.00 0.00 43.90 3.85
443 445 1.053424 CCCGATATTTTCCCCGAGGA 58.947 55.000 0.00 0.00 41.88 3.71
444 446 0.763035 ACCCGATATTTTCCCCGAGG 59.237 55.000 0.00 0.00 0.00 4.63
445 447 1.878953 CACCCGATATTTTCCCCGAG 58.121 55.000 0.00 0.00 0.00 4.63
446 448 0.179040 GCACCCGATATTTTCCCCGA 60.179 55.000 0.00 0.00 0.00 5.14
447 449 0.179029 AGCACCCGATATTTTCCCCG 60.179 55.000 0.00 0.00 0.00 5.73
448 450 1.605753 GAGCACCCGATATTTTCCCC 58.394 55.000 0.00 0.00 0.00 4.81
449 451 1.605753 GGAGCACCCGATATTTTCCC 58.394 55.000 0.00 0.00 0.00 3.97
461 463 2.045536 CTCAAGGCTGGGAGCACC 60.046 66.667 3.81 0.00 44.75 5.01
462 464 1.553690 TACCTCAAGGCTGGGAGCAC 61.554 60.000 10.16 0.00 44.75 4.40
463 465 1.229496 TACCTCAAGGCTGGGAGCA 60.229 57.895 10.16 0.00 44.75 4.26
464 466 1.222113 GTACCTCAAGGCTGGGAGC 59.778 63.158 10.16 0.00 41.46 4.70
465 467 0.827368 GAGTACCTCAAGGCTGGGAG 59.173 60.000 8.97 8.97 39.32 4.30
466 468 0.617820 GGAGTACCTCAAGGCTGGGA 60.618 60.000 8.15 0.00 39.32 4.37
467 469 1.627297 GGGAGTACCTCAAGGCTGGG 61.627 65.000 0.00 0.00 39.32 4.45
468 470 0.909610 TGGGAGTACCTCAAGGCTGG 60.910 60.000 0.00 0.00 41.11 4.85
469 471 0.539051 CTGGGAGTACCTCAAGGCTG 59.461 60.000 0.00 0.00 41.11 4.85
470 472 0.117340 ACTGGGAGTACCTCAAGGCT 59.883 55.000 0.00 0.00 41.11 4.58
471 473 0.250513 CACTGGGAGTACCTCAAGGC 59.749 60.000 0.00 0.00 41.11 4.35
472 474 0.250513 GCACTGGGAGTACCTCAAGG 59.749 60.000 0.00 0.00 41.11 3.61
473 475 1.205893 GAGCACTGGGAGTACCTCAAG 59.794 57.143 0.00 0.00 41.11 3.02
474 476 1.267121 GAGCACTGGGAGTACCTCAA 58.733 55.000 0.00 0.00 41.11 3.02
475 477 0.614979 GGAGCACTGGGAGTACCTCA 60.615 60.000 0.00 0.00 41.11 3.86
476 478 0.614979 TGGAGCACTGGGAGTACCTC 60.615 60.000 0.00 0.00 41.11 3.85
477 479 0.178903 TTGGAGCACTGGGAGTACCT 60.179 55.000 0.00 0.00 41.11 3.08
478 480 0.912486 ATTGGAGCACTGGGAGTACC 59.088 55.000 0.00 0.00 40.81 3.34
479 481 1.279271 ACATTGGAGCACTGGGAGTAC 59.721 52.381 0.00 0.00 0.00 2.73
480 482 1.555075 GACATTGGAGCACTGGGAGTA 59.445 52.381 0.00 0.00 0.00 2.59
481 483 0.326264 GACATTGGAGCACTGGGAGT 59.674 55.000 0.00 0.00 0.00 3.85
482 484 0.325933 TGACATTGGAGCACTGGGAG 59.674 55.000 0.00 0.00 0.00 4.30
483 485 0.994247 ATGACATTGGAGCACTGGGA 59.006 50.000 0.00 0.00 0.00 4.37
484 486 2.715749 TATGACATTGGAGCACTGGG 57.284 50.000 0.00 0.00 0.00 4.45
485 487 5.163513 GTTTTTATGACATTGGAGCACTGG 58.836 41.667 0.00 0.00 0.00 4.00
486 488 5.771469 TGTTTTTATGACATTGGAGCACTG 58.229 37.500 0.00 0.00 0.00 3.66
487 489 6.594788 ATGTTTTTATGACATTGGAGCACT 57.405 33.333 0.00 0.00 34.18 4.40
488 490 7.656707 AAATGTTTTTATGACATTGGAGCAC 57.343 32.000 3.53 0.00 44.55 4.40
489 491 8.674263 AAAAATGTTTTTATGACATTGGAGCA 57.326 26.923 1.83 0.00 44.55 4.26
540 542 9.754382 GCACATTCCTTATGAACATTCATATTT 57.246 29.630 13.68 0.00 46.27 1.40
541 543 8.916062 TGCACATTCCTTATGAACATTCATATT 58.084 29.630 13.68 0.00 46.27 1.28
542 544 8.467963 TGCACATTCCTTATGAACATTCATAT 57.532 30.769 13.68 0.00 46.27 1.78
543 545 7.878547 TGCACATTCCTTATGAACATTCATA 57.121 32.000 9.75 9.75 45.54 2.15
545 547 6.778834 ATGCACATTCCTTATGAACATTCA 57.221 33.333 0.00 0.00 42.14 2.57
546 548 7.141363 GGTATGCACATTCCTTATGAACATTC 58.859 38.462 0.00 0.00 37.69 2.67
547 549 6.606796 TGGTATGCACATTCCTTATGAACATT 59.393 34.615 7.66 0.00 37.69 2.71
548 550 6.128486 TGGTATGCACATTCCTTATGAACAT 58.872 36.000 7.66 0.00 37.69 2.71
549 551 5.504853 TGGTATGCACATTCCTTATGAACA 58.495 37.500 7.66 0.00 37.69 3.18
550 552 6.294176 GGATGGTATGCACATTCCTTATGAAC 60.294 42.308 7.66 0.00 37.69 3.18
551 553 5.769662 GGATGGTATGCACATTCCTTATGAA 59.230 40.000 7.66 0.00 37.69 2.57
552 554 5.316167 GGATGGTATGCACATTCCTTATGA 58.684 41.667 7.66 0.00 37.69 2.15
553 555 4.460382 GGGATGGTATGCACATTCCTTATG 59.540 45.833 5.96 0.00 40.27 1.90
554 556 4.666512 GGGATGGTATGCACATTCCTTAT 58.333 43.478 5.96 0.00 40.27 1.73
555 557 4.098914 GGGATGGTATGCACATTCCTTA 57.901 45.455 5.96 0.00 40.27 2.69
556 558 2.949447 GGGATGGTATGCACATTCCTT 58.051 47.619 5.96 1.81 40.27 3.36
557 559 2.664402 GGGATGGTATGCACATTCCT 57.336 50.000 5.96 0.00 40.27 3.36
558 560 2.664402 AGGGATGGTATGCACATTCC 57.336 50.000 5.16 5.16 43.18 3.01
559 561 6.463995 TTTTTAGGGATGGTATGCACATTC 57.536 37.500 0.00 0.00 0.00 2.67
560 562 7.436320 AATTTTTAGGGATGGTATGCACATT 57.564 32.000 0.00 0.00 0.00 2.71
561 563 7.125507 TGAAATTTTTAGGGATGGTATGCACAT 59.874 33.333 0.00 0.00 0.00 3.21
562 564 6.438741 TGAAATTTTTAGGGATGGTATGCACA 59.561 34.615 0.00 0.00 0.00 4.57
563 565 6.872920 TGAAATTTTTAGGGATGGTATGCAC 58.127 36.000 0.00 0.00 0.00 4.57
564 566 6.098124 CCTGAAATTTTTAGGGATGGTATGCA 59.902 38.462 11.24 0.00 0.00 3.96
565 567 6.098266 ACCTGAAATTTTTAGGGATGGTATGC 59.902 38.462 20.45 0.00 35.89 3.14
566 568 7.201911 GGACCTGAAATTTTTAGGGATGGTATG 60.202 40.741 20.45 0.00 35.89 2.39
567 569 6.839134 GGACCTGAAATTTTTAGGGATGGTAT 59.161 38.462 20.45 1.78 35.89 2.73
568 570 6.192044 GGACCTGAAATTTTTAGGGATGGTA 58.808 40.000 20.45 0.00 35.89 3.25
569 571 5.023452 GGACCTGAAATTTTTAGGGATGGT 58.977 41.667 20.45 3.78 35.89 3.55
570 572 5.022787 TGGACCTGAAATTTTTAGGGATGG 58.977 41.667 20.45 0.90 35.89 3.51
571 573 6.603940 TTGGACCTGAAATTTTTAGGGATG 57.396 37.500 20.45 0.55 35.89 3.51
572 574 6.787458 AGTTTGGACCTGAAATTTTTAGGGAT 59.213 34.615 20.45 4.29 35.89 3.85
573 575 6.140377 AGTTTGGACCTGAAATTTTTAGGGA 58.860 36.000 20.45 5.13 35.89 4.20
574 576 6.041523 TGAGTTTGGACCTGAAATTTTTAGGG 59.958 38.462 20.45 8.91 35.89 3.53
575 577 7.049799 TGAGTTTGGACCTGAAATTTTTAGG 57.950 36.000 16.23 16.23 37.61 2.69
576 578 8.940768 TTTGAGTTTGGACCTGAAATTTTTAG 57.059 30.769 0.00 0.00 0.00 1.85
577 579 9.157104 GTTTTGAGTTTGGACCTGAAATTTTTA 57.843 29.630 0.00 0.00 0.00 1.52
578 580 7.663493 TGTTTTGAGTTTGGACCTGAAATTTTT 59.337 29.630 0.00 0.00 0.00 1.94
579 581 7.119116 GTGTTTTGAGTTTGGACCTGAAATTTT 59.881 33.333 0.00 0.00 0.00 1.82
580 582 6.593770 GTGTTTTGAGTTTGGACCTGAAATTT 59.406 34.615 0.00 0.00 0.00 1.82
581 583 6.106003 GTGTTTTGAGTTTGGACCTGAAATT 58.894 36.000 0.00 0.00 0.00 1.82
582 584 5.186797 TGTGTTTTGAGTTTGGACCTGAAAT 59.813 36.000 0.00 0.00 0.00 2.17
583 585 4.524714 TGTGTTTTGAGTTTGGACCTGAAA 59.475 37.500 0.00 0.00 0.00 2.69
584 586 4.082463 GTGTGTTTTGAGTTTGGACCTGAA 60.082 41.667 0.00 0.00 0.00 3.02
585 587 3.442273 GTGTGTTTTGAGTTTGGACCTGA 59.558 43.478 0.00 0.00 0.00 3.86
586 588 3.192422 TGTGTGTTTTGAGTTTGGACCTG 59.808 43.478 0.00 0.00 0.00 4.00
587 589 3.426615 TGTGTGTTTTGAGTTTGGACCT 58.573 40.909 0.00 0.00 0.00 3.85
588 590 3.859411 TGTGTGTTTTGAGTTTGGACC 57.141 42.857 0.00 0.00 0.00 4.46
589 591 5.406649 TCAATGTGTGTTTTGAGTTTGGAC 58.593 37.500 0.00 0.00 0.00 4.02
590 592 5.417266 TCTCAATGTGTGTTTTGAGTTTGGA 59.583 36.000 11.24 0.00 45.77 3.53
591 593 5.649557 TCTCAATGTGTGTTTTGAGTTTGG 58.350 37.500 11.24 0.00 45.77 3.28
592 594 7.116090 TGTTTCTCAATGTGTGTTTTGAGTTTG 59.884 33.333 11.24 0.00 45.77 2.93
593 595 7.151308 TGTTTCTCAATGTGTGTTTTGAGTTT 58.849 30.769 11.24 0.00 45.77 2.66
594 596 6.686630 TGTTTCTCAATGTGTGTTTTGAGTT 58.313 32.000 11.24 0.00 45.77 3.01
595 597 6.266168 TGTTTCTCAATGTGTGTTTTGAGT 57.734 33.333 11.24 0.00 45.77 3.41
596 598 7.579589 TTTGTTTCTCAATGTGTGTTTTGAG 57.420 32.000 6.37 6.37 46.57 3.02
597 599 7.953158 TTTTGTTTCTCAATGTGTGTTTTGA 57.047 28.000 0.00 0.00 35.84 2.69
598 600 9.053135 CATTTTTGTTTCTCAATGTGTGTTTTG 57.947 29.630 0.00 0.00 35.84 2.44
599 601 8.782144 ACATTTTTGTTTCTCAATGTGTGTTTT 58.218 25.926 0.00 0.00 35.84 2.43
600 602 8.229137 CACATTTTTGTTTCTCAATGTGTGTTT 58.771 29.630 13.37 0.00 38.59 2.83
601 603 7.601886 TCACATTTTTGTTTCTCAATGTGTGTT 59.398 29.630 18.54 0.00 41.45 3.32
602 604 7.095910 TCACATTTTTGTTTCTCAATGTGTGT 58.904 30.769 18.54 0.00 41.45 3.72
603 605 7.522901 TCACATTTTTGTTTCTCAATGTGTG 57.477 32.000 18.54 6.79 41.45 3.82
604 606 8.545229 TTTCACATTTTTGTTTCTCAATGTGT 57.455 26.923 18.54 0.00 41.45 3.72
605 607 9.640974 GATTTCACATTTTTGTTTCTCAATGTG 57.359 29.630 14.84 14.84 41.77 3.21
606 608 9.603921 AGATTTCACATTTTTGTTTCTCAATGT 57.396 25.926 0.00 0.00 35.84 2.71
642 644 9.930693 TGTTGTTTTGGTCTTTTTATTTACACT 57.069 25.926 0.00 0.00 0.00 3.55
643 645 9.961266 GTGTTGTTTTGGTCTTTTTATTTACAC 57.039 29.630 0.00 0.00 0.00 2.90
644 646 9.930693 AGTGTTGTTTTGGTCTTTTTATTTACA 57.069 25.926 0.00 0.00 0.00 2.41
647 649 8.931775 GTCAGTGTTGTTTTGGTCTTTTTATTT 58.068 29.630 0.00 0.00 0.00 1.40
648 650 8.091449 TGTCAGTGTTGTTTTGGTCTTTTTATT 58.909 29.630 0.00 0.00 0.00 1.40
649 651 7.544217 GTGTCAGTGTTGTTTTGGTCTTTTTAT 59.456 33.333 0.00 0.00 0.00 1.40
650 652 6.864165 GTGTCAGTGTTGTTTTGGTCTTTTTA 59.136 34.615 0.00 0.00 0.00 1.52
651 653 5.694458 GTGTCAGTGTTGTTTTGGTCTTTTT 59.306 36.000 0.00 0.00 0.00 1.94
652 654 5.010617 AGTGTCAGTGTTGTTTTGGTCTTTT 59.989 36.000 0.00 0.00 0.00 2.27
653 655 4.522789 AGTGTCAGTGTTGTTTTGGTCTTT 59.477 37.500 0.00 0.00 0.00 2.52
654 656 4.079253 AGTGTCAGTGTTGTTTTGGTCTT 58.921 39.130 0.00 0.00 0.00 3.01
655 657 3.686016 AGTGTCAGTGTTGTTTTGGTCT 58.314 40.909 0.00 0.00 0.00 3.85
656 658 5.751243 ATAGTGTCAGTGTTGTTTTGGTC 57.249 39.130 0.00 0.00 0.00 4.02
657 659 5.650266 TGAATAGTGTCAGTGTTGTTTTGGT 59.350 36.000 0.00 0.00 0.00 3.67
658 660 5.971202 GTGAATAGTGTCAGTGTTGTTTTGG 59.029 40.000 0.00 0.00 0.00 3.28
659 661 6.468956 GTGTGAATAGTGTCAGTGTTGTTTTG 59.531 38.462 0.00 0.00 0.00 2.44
660 662 6.404293 GGTGTGAATAGTGTCAGTGTTGTTTT 60.404 38.462 0.00 0.00 0.00 2.43
661 663 5.065988 GGTGTGAATAGTGTCAGTGTTGTTT 59.934 40.000 0.00 0.00 0.00 2.83
662 664 4.574828 GGTGTGAATAGTGTCAGTGTTGTT 59.425 41.667 0.00 0.00 0.00 2.83
663 665 4.127171 GGTGTGAATAGTGTCAGTGTTGT 58.873 43.478 0.00 0.00 0.00 3.32
664 666 4.212004 CAGGTGTGAATAGTGTCAGTGTTG 59.788 45.833 0.00 0.00 0.00 3.33
665 667 4.380531 CAGGTGTGAATAGTGTCAGTGTT 58.619 43.478 0.00 0.00 0.00 3.32
666 668 3.244215 CCAGGTGTGAATAGTGTCAGTGT 60.244 47.826 0.00 0.00 0.00 3.55
667 669 3.006859 TCCAGGTGTGAATAGTGTCAGTG 59.993 47.826 0.00 0.00 0.00 3.66
668 670 3.239449 TCCAGGTGTGAATAGTGTCAGT 58.761 45.455 0.00 0.00 0.00 3.41
669 671 3.961480 TCCAGGTGTGAATAGTGTCAG 57.039 47.619 0.00 0.00 0.00 3.51
670 672 4.908601 AATCCAGGTGTGAATAGTGTCA 57.091 40.909 0.00 0.00 0.00 3.58
671 673 5.003804 ACAAATCCAGGTGTGAATAGTGTC 58.996 41.667 0.00 0.00 0.00 3.67
672 674 4.985538 ACAAATCCAGGTGTGAATAGTGT 58.014 39.130 0.00 0.00 0.00 3.55
673 675 5.248640 AGACAAATCCAGGTGTGAATAGTG 58.751 41.667 0.00 0.00 0.00 2.74
674 676 5.505181 AGACAAATCCAGGTGTGAATAGT 57.495 39.130 0.00 0.00 0.00 2.12
675 677 6.824305 AAAGACAAATCCAGGTGTGAATAG 57.176 37.500 0.00 0.00 0.00 1.73
676 678 7.595819 AAAAAGACAAATCCAGGTGTGAATA 57.404 32.000 0.00 0.00 0.00 1.75
677 679 6.484364 AAAAAGACAAATCCAGGTGTGAAT 57.516 33.333 0.00 0.00 0.00 2.57
678 680 5.930837 AAAAAGACAAATCCAGGTGTGAA 57.069 34.783 0.00 0.00 0.00 3.18
697 699 6.533012 TCGAAATGCACATTGAGAAACAAAAA 59.467 30.769 0.00 0.00 42.03 1.94
698 700 6.038985 TCGAAATGCACATTGAGAAACAAAA 58.961 32.000 0.00 0.00 42.03 2.44
699 701 5.586339 TCGAAATGCACATTGAGAAACAAA 58.414 33.333 0.00 0.00 42.03 2.83
700 702 5.180367 TCGAAATGCACATTGAGAAACAA 57.820 34.783 0.00 0.00 42.95 2.83
701 703 4.827304 TCGAAATGCACATTGAGAAACA 57.173 36.364 0.00 0.00 0.00 2.83
702 704 6.695292 AAATCGAAATGCACATTGAGAAAC 57.305 33.333 0.00 0.00 0.00 2.78
703 705 6.145858 CCAAAATCGAAATGCACATTGAGAAA 59.854 34.615 0.00 0.00 0.00 2.52
704 706 5.634439 CCAAAATCGAAATGCACATTGAGAA 59.366 36.000 0.00 0.00 0.00 2.87
705 707 5.048154 TCCAAAATCGAAATGCACATTGAGA 60.048 36.000 0.00 0.64 0.00 3.27
706 708 5.061311 GTCCAAAATCGAAATGCACATTGAG 59.939 40.000 0.00 0.00 0.00 3.02
707 709 4.922692 GTCCAAAATCGAAATGCACATTGA 59.077 37.500 0.00 0.00 0.00 2.57
708 710 4.925054 AGTCCAAAATCGAAATGCACATTG 59.075 37.500 0.00 0.00 0.00 2.82
709 711 5.138125 AGTCCAAAATCGAAATGCACATT 57.862 34.783 0.00 0.00 0.00 2.71
710 712 4.789012 AGTCCAAAATCGAAATGCACAT 57.211 36.364 0.00 0.00 0.00 3.21
711 713 4.037327 TCAAGTCCAAAATCGAAATGCACA 59.963 37.500 0.00 0.00 0.00 4.57
712 714 4.545610 TCAAGTCCAAAATCGAAATGCAC 58.454 39.130 0.00 0.00 0.00 4.57
713 715 4.844998 TCAAGTCCAAAATCGAAATGCA 57.155 36.364 0.00 0.00 0.00 3.96
714 716 6.710692 ATTTCAAGTCCAAAATCGAAATGC 57.289 33.333 0.00 0.00 33.17 3.56
715 717 9.934190 AAAAATTTCAAGTCCAAAATCGAAATG 57.066 25.926 0.00 0.00 34.31 2.32
718 720 9.255304 CCTAAAAATTTCAAGTCCAAAATCGAA 57.745 29.630 0.00 0.00 0.00 3.71
719 721 8.634444 TCCTAAAAATTTCAAGTCCAAAATCGA 58.366 29.630 0.00 0.00 0.00 3.59
720 722 8.810652 TCCTAAAAATTTCAAGTCCAAAATCG 57.189 30.769 0.00 0.00 0.00 3.34
721 723 9.764363 ACTCCTAAAAATTTCAAGTCCAAAATC 57.236 29.630 0.00 0.00 0.00 2.17
722 724 9.764363 GACTCCTAAAAATTTCAAGTCCAAAAT 57.236 29.630 0.00 0.00 0.00 1.82
723 725 7.918562 CGACTCCTAAAAATTTCAAGTCCAAAA 59.081 33.333 0.00 0.00 0.00 2.44
724 726 7.067737 ACGACTCCTAAAAATTTCAAGTCCAAA 59.932 33.333 0.00 0.00 0.00 3.28
725 727 6.544564 ACGACTCCTAAAAATTTCAAGTCCAA 59.455 34.615 0.00 0.00 0.00 3.53
726 728 6.059484 ACGACTCCTAAAAATTTCAAGTCCA 58.941 36.000 0.00 0.00 0.00 4.02
727 729 6.555812 ACGACTCCTAAAAATTTCAAGTCC 57.444 37.500 0.00 0.00 0.00 3.85
728 730 8.307921 ACTACGACTCCTAAAAATTTCAAGTC 57.692 34.615 0.00 0.51 0.00 3.01
729 731 7.929785 TGACTACGACTCCTAAAAATTTCAAGT 59.070 33.333 0.00 0.00 0.00 3.16
730 732 8.306680 TGACTACGACTCCTAAAAATTTCAAG 57.693 34.615 0.00 0.00 0.00 3.02
731 733 8.842358 ATGACTACGACTCCTAAAAATTTCAA 57.158 30.769 0.00 0.00 0.00 2.69
735 737 9.543783 GGAATATGACTACGACTCCTAAAAATT 57.456 33.333 0.00 0.00 0.00 1.82
736 738 8.148999 GGGAATATGACTACGACTCCTAAAAAT 58.851 37.037 0.00 0.00 0.00 1.82
737 739 7.343833 AGGGAATATGACTACGACTCCTAAAAA 59.656 37.037 0.00 0.00 0.00 1.94
738 740 6.837568 AGGGAATATGACTACGACTCCTAAAA 59.162 38.462 0.00 0.00 0.00 1.52
739 741 6.371278 AGGGAATATGACTACGACTCCTAAA 58.629 40.000 0.00 0.00 0.00 1.85
740 742 5.950023 AGGGAATATGACTACGACTCCTAA 58.050 41.667 0.00 0.00 0.00 2.69
741 743 5.579753 AGGGAATATGACTACGACTCCTA 57.420 43.478 0.00 0.00 0.00 2.94
742 744 4.456662 AGGGAATATGACTACGACTCCT 57.543 45.455 0.00 0.00 0.00 3.69
743 745 5.944599 TGATAGGGAATATGACTACGACTCC 59.055 44.000 0.00 0.00 0.00 3.85
744 746 7.040617 TGTTGATAGGGAATATGACTACGACTC 60.041 40.741 0.00 0.00 0.00 3.36
745 747 6.776116 TGTTGATAGGGAATATGACTACGACT 59.224 38.462 0.00 0.00 0.00 4.18
746 748 6.978338 TGTTGATAGGGAATATGACTACGAC 58.022 40.000 0.00 0.00 0.00 4.34
747 749 7.776618 ATGTTGATAGGGAATATGACTACGA 57.223 36.000 0.00 0.00 0.00 3.43
748 750 8.088365 TGAATGTTGATAGGGAATATGACTACG 58.912 37.037 0.00 0.00 0.00 3.51
749 751 9.429359 CTGAATGTTGATAGGGAATATGACTAC 57.571 37.037 0.00 0.00 0.00 2.73
750 752 9.379770 TCTGAATGTTGATAGGGAATATGACTA 57.620 33.333 0.00 0.00 0.00 2.59
751 753 8.267620 TCTGAATGTTGATAGGGAATATGACT 57.732 34.615 0.00 0.00 0.00 3.41
752 754 9.512588 AATCTGAATGTTGATAGGGAATATGAC 57.487 33.333 0.00 0.00 0.00 3.06
753 755 9.730705 GAATCTGAATGTTGATAGGGAATATGA 57.269 33.333 0.00 0.00 0.00 2.15
754 756 9.736414 AGAATCTGAATGTTGATAGGGAATATG 57.264 33.333 0.00 0.00 0.00 1.78
757 759 9.484806 AAAAGAATCTGAATGTTGATAGGGAAT 57.515 29.630 0.00 0.00 0.00 3.01
758 760 8.884124 AAAAGAATCTGAATGTTGATAGGGAA 57.116 30.769 0.00 0.00 0.00 3.97
759 761 8.884124 AAAAAGAATCTGAATGTTGATAGGGA 57.116 30.769 0.00 0.00 0.00 4.20
807 809 9.559958 CGTGCTCTAATGTCAAAAAGAATATTT 57.440 29.630 0.00 0.00 0.00 1.40
808 810 8.184192 CCGTGCTCTAATGTCAAAAAGAATATT 58.816 33.333 0.00 0.00 0.00 1.28
809 811 7.201732 CCCGTGCTCTAATGTCAAAAAGAATAT 60.202 37.037 0.00 0.00 0.00 1.28
810 812 6.093495 CCCGTGCTCTAATGTCAAAAAGAATA 59.907 38.462 0.00 0.00 0.00 1.75
811 813 5.106157 CCCGTGCTCTAATGTCAAAAAGAAT 60.106 40.000 0.00 0.00 0.00 2.40
812 814 4.215399 CCCGTGCTCTAATGTCAAAAAGAA 59.785 41.667 0.00 0.00 0.00 2.52
813 815 3.751175 CCCGTGCTCTAATGTCAAAAAGA 59.249 43.478 0.00 0.00 0.00 2.52
814 816 3.751175 TCCCGTGCTCTAATGTCAAAAAG 59.249 43.478 0.00 0.00 0.00 2.27
815 817 3.745799 TCCCGTGCTCTAATGTCAAAAA 58.254 40.909 0.00 0.00 0.00 1.94
816 818 3.410631 TCCCGTGCTCTAATGTCAAAA 57.589 42.857 0.00 0.00 0.00 2.44
817 819 3.244422 ACTTCCCGTGCTCTAATGTCAAA 60.244 43.478 0.00 0.00 0.00 2.69
818 820 2.301870 ACTTCCCGTGCTCTAATGTCAA 59.698 45.455 0.00 0.00 0.00 3.18
819 821 1.899814 ACTTCCCGTGCTCTAATGTCA 59.100 47.619 0.00 0.00 0.00 3.58
820 822 2.674796 ACTTCCCGTGCTCTAATGTC 57.325 50.000 0.00 0.00 0.00 3.06
821 823 2.167900 GGTACTTCCCGTGCTCTAATGT 59.832 50.000 0.00 0.00 0.00 2.71
822 824 2.822764 GGTACTTCCCGTGCTCTAATG 58.177 52.381 0.00 0.00 0.00 1.90
834 836 1.205460 TCCAGCCTTGGGGTACTTCC 61.205 60.000 0.00 0.00 45.10 3.46
835 837 0.253327 CTCCAGCCTTGGGGTACTTC 59.747 60.000 0.00 0.00 45.10 3.01
836 838 2.387952 CTCCAGCCTTGGGGTACTT 58.612 57.895 0.00 0.00 45.10 2.24
837 839 4.153957 CTCCAGCCTTGGGGTACT 57.846 61.111 0.00 0.00 45.10 2.73
842 844 3.655211 AGGTGCTCCAGCCTTGGG 61.655 66.667 7.70 0.00 45.10 4.12
843 845 2.207501 ATCAGGTGCTCCAGCCTTGG 62.208 60.000 7.70 0.00 46.49 3.61
844 846 0.543277 TATCAGGTGCTCCAGCCTTG 59.457 55.000 7.70 0.00 41.18 3.61
845 847 0.543749 GTATCAGGTGCTCCAGCCTT 59.456 55.000 7.70 0.00 41.18 4.35
846 848 0.326048 AGTATCAGGTGCTCCAGCCT 60.326 55.000 7.70 0.00 41.18 4.58
847 849 0.543749 AAGTATCAGGTGCTCCAGCC 59.456 55.000 7.70 0.00 41.18 4.85
848 850 2.284190 GAAAGTATCAGGTGCTCCAGC 58.716 52.381 7.70 0.00 42.50 4.85
849 851 2.420687 GGGAAAGTATCAGGTGCTCCAG 60.421 54.545 7.70 0.00 35.89 3.86
850 852 1.559682 GGGAAAGTATCAGGTGCTCCA 59.440 52.381 7.70 0.00 35.89 3.86
851 853 1.134068 GGGGAAAGTATCAGGTGCTCC 60.134 57.143 0.00 0.00 0.00 4.70
852 854 1.559682 TGGGGAAAGTATCAGGTGCTC 59.440 52.381 0.00 0.00 0.00 4.26
853 855 1.282157 GTGGGGAAAGTATCAGGTGCT 59.718 52.381 0.00 0.00 0.00 4.40
854 856 1.751437 GTGGGGAAAGTATCAGGTGC 58.249 55.000 0.00 0.00 0.00 5.01
855 857 1.278127 ACGTGGGGAAAGTATCAGGTG 59.722 52.381 0.00 0.00 0.00 4.00
856 858 1.553704 GACGTGGGGAAAGTATCAGGT 59.446 52.381 0.00 0.00 0.00 4.00
857 859 1.134491 GGACGTGGGGAAAGTATCAGG 60.134 57.143 0.00 0.00 0.00 3.86
858 860 1.831736 AGGACGTGGGGAAAGTATCAG 59.168 52.381 0.00 0.00 0.00 2.90
859 861 1.829222 GAGGACGTGGGGAAAGTATCA 59.171 52.381 0.00 0.00 0.00 2.15
860 862 1.202382 CGAGGACGTGGGGAAAGTATC 60.202 57.143 0.00 0.00 34.56 2.24
861 863 0.822164 CGAGGACGTGGGGAAAGTAT 59.178 55.000 0.00 0.00 34.56 2.12
862 864 2.269978 CGAGGACGTGGGGAAAGTA 58.730 57.895 0.00 0.00 34.56 2.24
863 865 3.057337 CGAGGACGTGGGGAAAGT 58.943 61.111 0.00 0.00 34.56 2.66
1431 1433 1.925972 GGCCTCCTCCAGGTCCTTT 60.926 63.158 0.00 0.00 41.80 3.11
1561 1563 2.292292 CGAACAACCCGAGACCAAATTT 59.708 45.455 0.00 0.00 0.00 1.82
1752 1774 2.110990 CGGCACACATTTTGCATATCG 58.889 47.619 0.00 0.00 42.12 2.92
1800 1822 5.181748 GGCAGTGTTCATGTTCTTAGAGAT 58.818 41.667 0.00 0.00 0.00 2.75
1987 2009 4.404715 GCCTCCCTCTGTACAGTATTAACA 59.595 45.833 21.99 0.38 0.00 2.41
2049 2071 1.673168 GGTTCAGCTGGCTTCCATAG 58.327 55.000 15.13 0.00 30.82 2.23
2078 2100 9.788960 CCTTCTATTGTTGTTTTAATTAGCCTC 57.211 33.333 0.00 0.00 0.00 4.70
2159 2181 4.015872 AGGATTACCGAGCTTTGTCAAA 57.984 40.909 0.00 0.00 41.83 2.69
2171 2193 1.497161 AGGAGGGACAAGGATTACCG 58.503 55.000 0.00 0.00 41.83 4.02
2185 2207 2.420129 CCATGTCTAACCGGAAAGGAGG 60.420 54.545 9.46 1.86 45.00 4.30
2187 2209 2.262637 ACCATGTCTAACCGGAAAGGA 58.737 47.619 9.46 0.00 45.00 3.36
2193 2215 7.165460 TGTATATGATACCATGTCTAACCGG 57.835 40.000 0.00 0.00 34.31 5.28
2194 2216 8.251026 ACATGTATATGATACCATGTCTAACCG 58.749 37.037 6.45 0.00 37.73 4.44
2233 2255 4.215109 GGGCATGGTTGGTTAGACATATT 58.785 43.478 0.00 0.00 0.00 1.28
2236 2258 1.357420 TGGGCATGGTTGGTTAGACAT 59.643 47.619 0.00 0.00 0.00 3.06
2303 2327 3.265221 TCATCAGCCAGAAAACCATCTCT 59.735 43.478 0.00 0.00 0.00 3.10
2335 2359 9.090692 CTTTTTGGCAATCCTTTACAATCTATG 57.909 33.333 0.00 0.00 0.00 2.23
2417 2445 9.923143 GGGAAAATAAGCATTTAACTAGTTTGT 57.077 29.630 14.49 0.00 33.09 2.83
2433 2466 9.681062 TTACAGGTAATCTTCAGGGAAAATAAG 57.319 33.333 0.00 0.00 0.00 1.73
2516 2549 1.939934 TGCTCCTTGTCAAAAGACACG 59.060 47.619 0.00 0.00 34.45 4.49
2594 2627 6.363167 AATTGAAGAAATGAAGGGAATGCA 57.637 33.333 0.00 0.00 0.00 3.96
2607 2640 5.308014 TGCTGCACTCTCTAATTGAAGAAA 58.692 37.500 0.00 0.00 0.00 2.52
2802 2835 8.316946 TGGATATGTCAGATCAATGTAAGGATC 58.683 37.037 9.57 0.00 40.13 3.36
2810 2843 6.014413 AGTCCTCTGGATATGTCAGATCAATG 60.014 42.308 9.57 0.00 40.07 2.82
2813 2846 5.072129 AGTCCTCTGGATATGTCAGATCA 57.928 43.478 9.57 0.00 40.07 2.92
2880 2913 5.875224 TGATAAGAATGGACAAGTTGGTGA 58.125 37.500 7.96 0.00 0.00 4.02
2939 2972 0.322008 ACAGAAGCAAGGCTACTGGC 60.322 55.000 0.00 0.00 44.43 4.85
2960 2993 4.843728 ACTAGCCATGGAGAATTTCGAAA 58.156 39.130 18.40 13.91 0.00 3.46
2999 3032 2.404923 TCCGTGGAAGTGAACAAACA 57.595 45.000 0.00 0.00 0.00 2.83
3033 3066 4.160814 AGCTGGCATTGCTTGATTTGAATA 59.839 37.500 8.82 0.00 37.52 1.75
3050 3083 1.228245 TGTTGGACCTCAAGCTGGC 60.228 57.895 0.00 0.00 35.80 4.85
3051 3084 0.109342 ACTGTTGGACCTCAAGCTGG 59.891 55.000 0.00 0.00 35.80 4.85
3158 3192 6.753913 TGATGCTCTAGGGAGTAAAATGAT 57.246 37.500 0.00 0.00 41.38 2.45
3165 3199 2.962859 TGCATGATGCTCTAGGGAGTA 58.037 47.619 19.19 0.00 45.31 2.59
3387 5922 9.614792 AACTATAGCTAACCTGTGGAAATAAAG 57.385 33.333 0.00 0.00 0.00 1.85
3398 5933 8.948631 TTTGAATCTCAACTATAGCTAACCTG 57.051 34.615 0.00 0.00 35.89 4.00
3454 5991 5.449862 GGCACTCTGATTCAGTGAGTACTAG 60.450 48.000 19.66 7.71 43.54 2.57
3571 6108 9.612620 GTTCAATCGATGTTCTTTAGAATTTGT 57.387 29.630 0.00 0.00 36.33 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.