Multiple sequence alignment - TraesCS3D01G110300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G110300 chr3D 100.000 5193 0 0 1 5193 64182650 64177458 0.000000e+00 9590.0
1 TraesCS3D01G110300 chr3A 94.693 2280 113 4 1487 3759 74239273 74236995 0.000000e+00 3533.0
2 TraesCS3D01G110300 chr3A 88.847 798 31 25 701 1447 74240062 74239272 0.000000e+00 928.0
3 TraesCS3D01G110300 chr3A 90.213 705 58 5 3764 4457 74236922 74236218 0.000000e+00 909.0
4 TraesCS3D01G110300 chr3A 91.781 292 20 2 4465 4753 74236142 74235852 2.250000e-108 403.0
5 TraesCS3D01G110300 chr3A 91.391 151 13 0 637 787 74339958 74339808 1.900000e-49 207.0
6 TraesCS3D01G110300 chr3A 86.232 138 10 4 238 375 74353393 74353265 1.950000e-29 141.0
7 TraesCS3D01G110300 chr3A 95.238 84 4 0 3529 3612 74237144 74237227 3.260000e-27 134.0
8 TraesCS3D01G110300 chr3A 100.000 31 0 0 4809 4839 74235405 74235375 2.020000e-04 58.4
9 TraesCS3D01G110300 chr3A 100.000 31 0 0 4779 4809 74235425 74235455 2.020000e-04 58.4
10 TraesCS3D01G110300 chr3A 100.000 28 0 0 394 421 669569245 669569272 9.000000e-03 52.8
11 TraesCS3D01G110300 chr3B 93.525 1946 85 13 1620 3547 106285172 106283250 0.000000e+00 2857.0
12 TraesCS3D01G110300 chr3B 91.977 698 49 4 3764 4455 106283006 106282310 0.000000e+00 972.0
13 TraesCS3D01G110300 chr3B 86.364 484 46 14 5 482 106415850 106415381 1.290000e-140 510.0
14 TraesCS3D01G110300 chr3B 92.560 336 19 3 943 1276 106285987 106285656 1.310000e-130 477.0
15 TraesCS3D01G110300 chr3B 93.214 280 17 2 637 916 106286320 106286043 1.350000e-110 411.0
16 TraesCS3D01G110300 chr3B 92.035 226 14 3 4465 4687 106282193 106281969 1.090000e-81 315.0
17 TraesCS3D01G110300 chr3B 96.532 173 6 0 3587 3759 106283250 106283078 2.370000e-73 287.0
18 TraesCS3D01G110300 chr3B 85.714 280 20 9 4887 5153 106281108 106280836 1.420000e-70 278.0
19 TraesCS3D01G110300 chr3B 87.407 135 12 1 1475 1609 106285394 106285265 3.240000e-32 150.0
20 TraesCS3D01G110300 chr3B 100.000 29 0 0 303 331 434708767 434708795 3.000000e-03 54.7
21 TraesCS3D01G110300 chr7D 94.253 87 4 1 3527 3613 131468367 131468452 1.170000e-26 132.0
22 TraesCS3D01G110300 chr7D 91.860 86 6 1 3527 3612 131468451 131468367 9.130000e-23 119.0
23 TraesCS3D01G110300 chr4A 90.526 95 9 0 3520 3614 565436115 565436209 5.460000e-25 126.0
24 TraesCS3D01G110300 chr4A 93.750 80 4 1 3527 3606 625404777 625404855 9.130000e-23 119.0
25 TraesCS3D01G110300 chr4A 76.871 147 19 10 13 148 485513958 485513816 9.330000e-08 69.4
26 TraesCS3D01G110300 chr6B 82.313 147 20 4 198 340 141650709 141650853 7.060000e-24 122.0
27 TraesCS3D01G110300 chr5D 90.909 88 8 0 3526 3613 484571074 484570987 9.130000e-23 119.0
28 TraesCS3D01G110300 chr5A 90.909 88 8 0 3526 3613 613010700 613010613 9.130000e-23 119.0
29 TraesCS3D01G110300 chr2A 90.110 91 9 0 3524 3614 613445337 613445427 9.130000e-23 119.0
30 TraesCS3D01G110300 chrUn 82.418 91 11 5 367 456 126946872 126946958 2.010000e-09 75.0
31 TraesCS3D01G110300 chr7A 100.000 32 0 0 15 46 209593560 209593591 5.620000e-05 60.2
32 TraesCS3D01G110300 chr1A 100.000 28 0 0 3766 3793 536247538 536247565 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G110300 chr3D 64177458 64182650 5192 True 9590.000 9590 100.0000 1 5193 1 chr3D.!!$R1 5192
1 TraesCS3D01G110300 chr3A 74235375 74240062 4687 True 1166.280 3533 93.1068 701 4839 5 chr3A.!!$R3 4138
2 TraesCS3D01G110300 chr3B 106280836 106286320 5484 True 718.375 2857 91.6205 637 5153 8 chr3B.!!$R2 4516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 505 0.179084 CACGCGGGACATGTAGGATT 60.179 55.000 12.47 0.00 0.00 3.01 F
505 506 0.179084 ACGCGGGACATGTAGGATTG 60.179 55.000 12.47 0.00 0.00 2.67 F
554 555 0.380378 GCAGTGCCACGTTTCTGAAA 59.620 50.000 2.85 0.00 0.00 2.69 F
601 602 0.884514 TTCGAGAGGTCAGTGAGCTG 59.115 55.000 28.66 14.79 40.67 4.24 F
730 731 1.549170 GGTTCCCGAAGAGCTAGAACA 59.451 52.381 0.00 0.00 38.83 3.18 F
2312 2540 1.324736 GGCTCTTTGAAGCACGTATCG 59.675 52.381 0.00 0.00 44.35 2.92 F
3565 3845 1.375551 AAGTGTCGCGGTTTTGAACT 58.624 45.000 6.13 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1611 0.107456 ATGTCCGACATCCATGAGGC 59.893 55.000 8.28 0.0 32.38 4.70 R
1908 2132 0.680921 AAATGTGGTGGGATGGCGAG 60.681 55.000 0.00 0.0 0.00 5.03 R
2093 2321 2.993899 CGTTTGACAAGCTAGTACCCTG 59.006 50.000 0.37 0.0 0.00 4.45 R
2296 2524 3.788434 ACAACGATACGTGCTTCAAAG 57.212 42.857 0.00 0.0 39.99 2.77 R
2610 2848 6.018425 ACAGCGTCATTAATCTATTTCAGCAG 60.018 38.462 0.00 0.0 0.00 4.24 R
3762 4042 0.107508 AGTGATGCACGCAGCCTTAT 60.108 50.000 4.63 0.0 44.83 1.73 R
4997 6220 0.327924 TGGGTGTGCTATCTGGGTTG 59.672 55.000 0.00 0.0 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 9.454585 AAAATGTGTATGATAAAATGCTGATCG 57.545 29.630 0.00 0.00 0.00 3.69
113 114 7.734924 ATGTGTATGATAAAATGCTGATCGT 57.265 32.000 0.00 0.00 0.00 3.73
114 115 6.947258 TGTGTATGATAAAATGCTGATCGTG 58.053 36.000 0.00 0.00 0.00 4.35
115 116 6.538381 TGTGTATGATAAAATGCTGATCGTGT 59.462 34.615 0.00 0.00 0.00 4.49
116 117 7.708752 TGTGTATGATAAAATGCTGATCGTGTA 59.291 33.333 0.00 0.00 0.00 2.90
117 118 8.712363 GTGTATGATAAAATGCTGATCGTGTAT 58.288 33.333 0.00 0.00 0.00 2.29
118 119 9.271828 TGTATGATAAAATGCTGATCGTGTATT 57.728 29.630 0.00 0.00 0.00 1.89
122 123 9.103861 TGATAAAATGCTGATCGTGTATTTACA 57.896 29.630 12.34 10.74 31.43 2.41
123 124 9.929722 GATAAAATGCTGATCGTGTATTTACAA 57.070 29.630 12.34 5.33 38.04 2.41
126 127 9.638239 AAAATGCTGATCGTGTATTTACAAAAT 57.362 25.926 12.34 0.00 38.04 1.82
127 128 8.619146 AATGCTGATCGTGTATTTACAAAATG 57.381 30.769 0.00 0.00 38.04 2.32
128 129 7.139896 TGCTGATCGTGTATTTACAAAATGT 57.860 32.000 0.00 0.00 38.04 2.71
129 130 7.589395 TGCTGATCGTGTATTTACAAAATGTT 58.411 30.769 0.00 0.00 38.04 2.71
130 131 8.722394 TGCTGATCGTGTATTTACAAAATGTTA 58.278 29.630 0.00 0.00 38.04 2.41
131 132 9.549509 GCTGATCGTGTATTTACAAAATGTTAA 57.450 29.630 0.00 0.00 38.04 2.01
164 165 7.658179 ACAGCAAATATTCCTGATGTATACG 57.342 36.000 17.95 0.00 40.22 3.06
165 166 7.441836 ACAGCAAATATTCCTGATGTATACGA 58.558 34.615 17.95 0.00 40.22 3.43
166 167 7.600375 ACAGCAAATATTCCTGATGTATACGAG 59.400 37.037 17.95 0.00 40.22 4.18
167 168 7.814587 CAGCAAATATTCCTGATGTATACGAGA 59.185 37.037 9.38 0.00 0.00 4.04
168 169 8.367911 AGCAAATATTCCTGATGTATACGAGAA 58.632 33.333 0.00 0.00 0.00 2.87
169 170 8.988934 GCAAATATTCCTGATGTATACGAGAAA 58.011 33.333 0.00 0.00 0.00 2.52
174 175 7.786178 TTCCTGATGTATACGAGAAAAATGG 57.214 36.000 0.00 0.00 0.00 3.16
175 176 7.119709 TCCTGATGTATACGAGAAAAATGGA 57.880 36.000 0.00 0.00 0.00 3.41
176 177 7.210174 TCCTGATGTATACGAGAAAAATGGAG 58.790 38.462 0.00 0.00 0.00 3.86
177 178 7.069455 TCCTGATGTATACGAGAAAAATGGAGA 59.931 37.037 0.00 0.00 0.00 3.71
178 179 7.383572 CCTGATGTATACGAGAAAAATGGAGAG 59.616 40.741 0.00 0.00 0.00 3.20
179 180 6.701841 TGATGTATACGAGAAAAATGGAGAGC 59.298 38.462 0.00 0.00 0.00 4.09
180 181 5.972935 TGTATACGAGAAAAATGGAGAGCA 58.027 37.500 0.00 0.00 0.00 4.26
181 182 6.582636 TGTATACGAGAAAAATGGAGAGCAT 58.417 36.000 0.00 0.00 0.00 3.79
182 183 5.998454 ATACGAGAAAAATGGAGAGCATG 57.002 39.130 0.00 0.00 0.00 4.06
183 184 2.421424 ACGAGAAAAATGGAGAGCATGC 59.579 45.455 10.51 10.51 0.00 4.06
184 185 2.421073 CGAGAAAAATGGAGAGCATGCA 59.579 45.455 21.98 0.00 0.00 3.96
185 186 3.066342 CGAGAAAAATGGAGAGCATGCAT 59.934 43.478 21.98 7.95 42.62 3.96
186 187 4.274214 CGAGAAAAATGGAGAGCATGCATA 59.726 41.667 21.98 0.92 39.36 3.14
187 188 5.560375 CGAGAAAAATGGAGAGCATGCATAG 60.560 44.000 21.98 0.00 39.36 2.23
188 189 5.443283 AGAAAAATGGAGAGCATGCATAGA 58.557 37.500 21.98 0.00 39.36 1.98
189 190 5.298777 AGAAAAATGGAGAGCATGCATAGAC 59.701 40.000 21.98 6.47 39.36 2.59
190 191 2.452295 ATGGAGAGCATGCATAGACG 57.548 50.000 21.98 0.00 38.35 4.18
191 192 1.402787 TGGAGAGCATGCATAGACGA 58.597 50.000 21.98 0.89 0.00 4.20
192 193 1.756538 TGGAGAGCATGCATAGACGAA 59.243 47.619 21.98 0.00 0.00 3.85
193 194 2.366590 TGGAGAGCATGCATAGACGAAT 59.633 45.455 21.98 0.00 0.00 3.34
194 195 3.181462 TGGAGAGCATGCATAGACGAATT 60.181 43.478 21.98 0.00 0.00 2.17
195 196 3.186001 GGAGAGCATGCATAGACGAATTG 59.814 47.826 21.98 0.00 0.00 2.32
196 197 4.053983 GAGAGCATGCATAGACGAATTGA 58.946 43.478 21.98 0.00 0.00 2.57
197 198 4.056740 AGAGCATGCATAGACGAATTGAG 58.943 43.478 21.98 0.00 0.00 3.02
198 199 2.547211 AGCATGCATAGACGAATTGAGC 59.453 45.455 21.98 0.00 0.00 4.26
199 200 2.288729 GCATGCATAGACGAATTGAGCA 59.711 45.455 14.21 0.00 34.78 4.26
200 201 3.058432 GCATGCATAGACGAATTGAGCAT 60.058 43.478 14.21 0.00 41.42 3.79
201 202 4.152938 GCATGCATAGACGAATTGAGCATA 59.847 41.667 14.21 0.00 39.00 3.14
202 203 5.334337 GCATGCATAGACGAATTGAGCATAA 60.334 40.000 14.21 0.00 39.00 1.90
203 204 6.661669 CATGCATAGACGAATTGAGCATAAA 58.338 36.000 0.00 0.00 39.00 1.40
204 205 6.676237 TGCATAGACGAATTGAGCATAAAA 57.324 33.333 0.00 0.00 0.00 1.52
205 206 7.082700 TGCATAGACGAATTGAGCATAAAAA 57.917 32.000 0.00 0.00 0.00 1.94
206 207 7.706159 TGCATAGACGAATTGAGCATAAAAAT 58.294 30.769 0.00 0.00 0.00 1.82
207 208 8.835439 TGCATAGACGAATTGAGCATAAAAATA 58.165 29.630 0.00 0.00 0.00 1.40
208 209 9.831737 GCATAGACGAATTGAGCATAAAAATAT 57.168 29.630 0.00 0.00 0.00 1.28
293 294 6.178239 ACGTGTAGAAAATATGTTTCTGGC 57.822 37.500 16.58 12.07 38.98 4.85
294 295 5.703592 ACGTGTAGAAAATATGTTTCTGGCA 59.296 36.000 16.58 13.56 38.98 4.92
295 296 6.374333 ACGTGTAGAAAATATGTTTCTGGCAT 59.626 34.615 16.58 0.00 38.98 4.40
296 297 7.551262 ACGTGTAGAAAATATGTTTCTGGCATA 59.449 33.333 16.58 0.00 38.98 3.14
297 298 8.559536 CGTGTAGAAAATATGTTTCTGGCATAT 58.440 33.333 16.58 0.00 40.17 1.78
301 302 8.099364 AGAAAATATGTTTCTGGCATATACCG 57.901 34.615 10.29 0.00 38.24 4.02
302 303 7.936847 AGAAAATATGTTTCTGGCATATACCGA 59.063 33.333 10.29 0.00 38.24 4.69
303 304 8.458573 AAAATATGTTTCTGGCATATACCGAA 57.541 30.769 0.00 0.00 38.24 4.30
304 305 8.458573 AAATATGTTTCTGGCATATACCGAAA 57.541 30.769 7.49 7.49 38.24 3.46
305 306 8.458573 AATATGTTTCTGGCATATACCGAAAA 57.541 30.769 11.25 2.03 38.24 2.29
306 307 6.959639 ATGTTTCTGGCATATACCGAAAAT 57.040 33.333 11.25 7.04 35.52 1.82
307 308 6.130298 TGTTTCTGGCATATACCGAAAATG 57.870 37.500 11.25 0.00 35.52 2.32
308 309 5.650266 TGTTTCTGGCATATACCGAAAATGT 59.350 36.000 11.25 0.00 35.52 2.71
309 310 6.824196 TGTTTCTGGCATATACCGAAAATGTA 59.176 34.615 11.25 0.00 35.52 2.29
310 311 7.500892 TGTTTCTGGCATATACCGAAAATGTAT 59.499 33.333 11.25 0.00 35.52 2.29
311 312 8.995220 GTTTCTGGCATATACCGAAAATGTATA 58.005 33.333 11.25 0.00 35.52 1.47
312 313 8.771920 TTCTGGCATATACCGAAAATGTATAG 57.228 34.615 0.00 0.00 35.31 1.31
313 314 7.903145 TCTGGCATATACCGAAAATGTATAGT 58.097 34.615 0.00 0.00 35.31 2.12
314 315 7.817478 TCTGGCATATACCGAAAATGTATAGTG 59.183 37.037 0.00 0.00 35.31 2.74
315 316 7.446769 TGGCATATACCGAAAATGTATAGTGT 58.553 34.615 0.00 0.00 35.31 3.55
316 317 7.386573 TGGCATATACCGAAAATGTATAGTGTG 59.613 37.037 0.00 0.00 35.31 3.82
317 318 7.386848 GGCATATACCGAAAATGTATAGTGTGT 59.613 37.037 0.00 0.00 35.31 3.72
318 319 9.414295 GCATATACCGAAAATGTATAGTGTGTA 57.586 33.333 0.00 0.00 35.31 2.90
323 324 8.780846 ACCGAAAATGTATAGTGTGTATGAAA 57.219 30.769 0.00 0.00 0.00 2.69
324 325 9.221933 ACCGAAAATGTATAGTGTGTATGAAAA 57.778 29.630 0.00 0.00 0.00 2.29
364 365 2.252535 AAATGGAAGGGGAATGGTGG 57.747 50.000 0.00 0.00 0.00 4.61
365 366 1.092549 AATGGAAGGGGAATGGTGGT 58.907 50.000 0.00 0.00 0.00 4.16
366 367 1.994399 ATGGAAGGGGAATGGTGGTA 58.006 50.000 0.00 0.00 0.00 3.25
367 368 1.761711 TGGAAGGGGAATGGTGGTAA 58.238 50.000 0.00 0.00 0.00 2.85
368 369 2.293246 TGGAAGGGGAATGGTGGTAAT 58.707 47.619 0.00 0.00 0.00 1.89
369 370 2.243736 TGGAAGGGGAATGGTGGTAATC 59.756 50.000 0.00 0.00 0.00 1.75
370 371 2.243736 GGAAGGGGAATGGTGGTAATCA 59.756 50.000 0.00 0.00 0.00 2.57
371 372 3.117131 GGAAGGGGAATGGTGGTAATCAT 60.117 47.826 0.00 0.00 0.00 2.45
372 373 3.884037 AGGGGAATGGTGGTAATCATC 57.116 47.619 0.00 0.00 0.00 2.92
373 374 3.407209 AGGGGAATGGTGGTAATCATCT 58.593 45.455 0.00 0.00 0.00 2.90
374 375 4.577096 AGGGGAATGGTGGTAATCATCTA 58.423 43.478 0.00 0.00 0.00 1.98
375 376 5.173246 AGGGGAATGGTGGTAATCATCTAT 58.827 41.667 0.00 0.00 0.00 1.98
376 377 5.616986 AGGGGAATGGTGGTAATCATCTATT 59.383 40.000 0.00 0.00 0.00 1.73
377 378 6.104691 AGGGGAATGGTGGTAATCATCTATTT 59.895 38.462 0.00 0.00 0.00 1.40
378 379 6.209391 GGGGAATGGTGGTAATCATCTATTTG 59.791 42.308 0.00 0.00 0.00 2.32
379 380 7.004086 GGGAATGGTGGTAATCATCTATTTGA 58.996 38.462 0.00 0.00 0.00 2.69
380 381 7.505585 GGGAATGGTGGTAATCATCTATTTGAA 59.494 37.037 0.00 0.00 0.00 2.69
381 382 8.912988 GGAATGGTGGTAATCATCTATTTGAAA 58.087 33.333 0.00 0.00 0.00 2.69
478 479 9.614792 AAATTTTAGTCATAAGTAATCTCGCCT 57.385 29.630 0.00 0.00 0.00 5.52
479 480 9.614792 AATTTTAGTCATAAGTAATCTCGCCTT 57.385 29.630 0.00 0.00 0.00 4.35
480 481 9.614792 ATTTTAGTCATAAGTAATCTCGCCTTT 57.385 29.630 0.00 0.00 0.00 3.11
481 482 9.444600 TTTTAGTCATAAGTAATCTCGCCTTTT 57.555 29.630 0.00 0.00 0.00 2.27
482 483 8.644318 TTAGTCATAAGTAATCTCGCCTTTTC 57.356 34.615 0.00 0.00 0.00 2.29
483 484 5.749109 AGTCATAAGTAATCTCGCCTTTTCG 59.251 40.000 0.00 0.00 0.00 3.46
484 485 5.519206 GTCATAAGTAATCTCGCCTTTTCGT 59.481 40.000 0.00 0.00 0.00 3.85
485 486 5.747197 TCATAAGTAATCTCGCCTTTTCGTC 59.253 40.000 0.00 0.00 0.00 4.20
486 487 3.587797 AGTAATCTCGCCTTTTCGTCA 57.412 42.857 0.00 0.00 0.00 4.35
487 488 3.251571 AGTAATCTCGCCTTTTCGTCAC 58.748 45.455 0.00 0.00 0.00 3.67
488 489 1.068474 AATCTCGCCTTTTCGTCACG 58.932 50.000 0.00 0.00 0.00 4.35
489 490 1.352156 ATCTCGCCTTTTCGTCACGC 61.352 55.000 0.00 0.00 0.00 5.34
490 491 3.335259 CTCGCCTTTTCGTCACGCG 62.335 63.158 3.53 3.53 44.00 6.01
491 492 4.424430 CGCCTTTTCGTCACGCGG 62.424 66.667 12.47 0.00 41.72 6.46
492 493 4.084888 GCCTTTTCGTCACGCGGG 62.085 66.667 12.47 6.51 41.72 6.13
493 494 2.356553 CCTTTTCGTCACGCGGGA 60.357 61.111 7.15 7.15 41.72 5.14
494 495 2.664436 CCTTTTCGTCACGCGGGAC 61.664 63.158 31.24 31.24 41.72 4.46
495 496 1.952133 CTTTTCGTCACGCGGGACA 60.952 57.895 37.72 23.38 41.72 4.02
496 497 1.289109 CTTTTCGTCACGCGGGACAT 61.289 55.000 37.72 0.19 41.72 3.06
497 498 1.561717 TTTTCGTCACGCGGGACATG 61.562 55.000 37.72 24.15 41.72 3.21
498 499 2.702751 TTTCGTCACGCGGGACATGT 62.703 55.000 37.72 0.00 41.72 3.21
499 500 1.864725 TTCGTCACGCGGGACATGTA 61.865 55.000 37.72 19.04 41.72 2.29
500 501 1.872234 CGTCACGCGGGACATGTAG 60.872 63.158 37.72 19.65 37.66 2.74
501 502 1.518572 GTCACGCGGGACATGTAGG 60.519 63.158 35.29 0.00 37.73 3.18
502 503 1.679641 TCACGCGGGACATGTAGGA 60.680 57.895 7.15 0.00 0.00 2.94
503 504 1.040893 TCACGCGGGACATGTAGGAT 61.041 55.000 7.15 0.00 0.00 3.24
504 505 0.179084 CACGCGGGACATGTAGGATT 60.179 55.000 12.47 0.00 0.00 3.01
505 506 0.179084 ACGCGGGACATGTAGGATTG 60.179 55.000 12.47 0.00 0.00 2.67
506 507 0.179084 CGCGGGACATGTAGGATTGT 60.179 55.000 0.00 0.00 0.00 2.71
507 508 1.067974 CGCGGGACATGTAGGATTGTA 59.932 52.381 0.00 0.00 0.00 2.41
508 509 2.755650 GCGGGACATGTAGGATTGTAG 58.244 52.381 0.00 0.00 0.00 2.74
509 510 2.548067 GCGGGACATGTAGGATTGTAGG 60.548 54.545 0.00 0.00 0.00 3.18
510 511 2.698797 CGGGACATGTAGGATTGTAGGT 59.301 50.000 0.00 0.00 0.00 3.08
511 512 3.492656 CGGGACATGTAGGATTGTAGGTG 60.493 52.174 0.00 0.00 0.00 4.00
512 513 3.467803 GGACATGTAGGATTGTAGGTGC 58.532 50.000 0.00 0.00 0.00 5.01
513 514 3.467803 GACATGTAGGATTGTAGGTGCC 58.532 50.000 0.00 0.00 0.00 5.01
514 515 2.843730 ACATGTAGGATTGTAGGTGCCA 59.156 45.455 0.00 0.00 0.00 4.92
515 516 3.206150 CATGTAGGATTGTAGGTGCCAC 58.794 50.000 0.00 0.00 0.00 5.01
516 517 1.206132 TGTAGGATTGTAGGTGCCACG 59.794 52.381 0.00 0.00 0.00 4.94
517 518 0.828022 TAGGATTGTAGGTGCCACGG 59.172 55.000 0.00 0.00 0.00 4.94
518 519 1.198759 AGGATTGTAGGTGCCACGGT 61.199 55.000 0.00 0.00 0.00 4.83
519 520 1.024579 GGATTGTAGGTGCCACGGTG 61.025 60.000 0.00 0.00 0.00 4.94
520 521 1.002624 ATTGTAGGTGCCACGGTGG 60.003 57.895 22.87 22.87 41.55 4.61
538 539 3.716006 CAACCGGCGAGTGTGCAG 61.716 66.667 9.30 0.00 36.28 4.41
539 540 4.235762 AACCGGCGAGTGTGCAGT 62.236 61.111 9.30 0.00 36.28 4.40
540 541 4.969196 ACCGGCGAGTGTGCAGTG 62.969 66.667 9.30 0.00 36.28 3.66
544 545 4.017877 GCGAGTGTGCAGTGCCAC 62.018 66.667 21.97 21.97 36.28 5.01
545 546 3.705638 CGAGTGTGCAGTGCCACG 61.706 66.667 22.70 11.59 38.55 4.94
546 547 2.588877 GAGTGTGCAGTGCCACGT 60.589 61.111 22.70 15.03 38.55 4.49
547 548 2.124736 AGTGTGCAGTGCCACGTT 60.125 55.556 22.70 10.32 38.55 3.99
548 549 1.714899 GAGTGTGCAGTGCCACGTTT 61.715 55.000 22.70 11.70 38.55 3.60
549 550 1.298339 GTGTGCAGTGCCACGTTTC 60.298 57.895 13.72 0.00 38.55 2.78
550 551 1.451207 TGTGCAGTGCCACGTTTCT 60.451 52.632 13.72 0.00 38.55 2.52
551 552 1.009675 GTGCAGTGCCACGTTTCTG 60.010 57.895 13.72 0.00 0.00 3.02
552 553 1.153269 TGCAGTGCCACGTTTCTGA 60.153 52.632 13.72 0.00 0.00 3.27
553 554 0.746204 TGCAGTGCCACGTTTCTGAA 60.746 50.000 13.72 0.00 0.00 3.02
554 555 0.380378 GCAGTGCCACGTTTCTGAAA 59.620 50.000 2.85 0.00 0.00 2.69
555 556 1.001378 GCAGTGCCACGTTTCTGAAAT 60.001 47.619 2.85 0.00 0.00 2.17
556 557 2.225491 GCAGTGCCACGTTTCTGAAATA 59.775 45.455 2.85 0.00 0.00 1.40
557 558 3.304391 GCAGTGCCACGTTTCTGAAATAA 60.304 43.478 2.85 0.00 0.00 1.40
558 559 4.615912 GCAGTGCCACGTTTCTGAAATAAT 60.616 41.667 2.85 0.00 0.00 1.28
559 560 5.460646 CAGTGCCACGTTTCTGAAATAATT 58.539 37.500 6.06 0.00 0.00 1.40
560 561 5.920273 CAGTGCCACGTTTCTGAAATAATTT 59.080 36.000 6.06 0.00 0.00 1.82
561 562 6.420604 CAGTGCCACGTTTCTGAAATAATTTT 59.579 34.615 6.06 0.00 0.00 1.82
562 563 6.983890 AGTGCCACGTTTCTGAAATAATTTTT 59.016 30.769 6.06 0.00 0.00 1.94
597 598 7.979444 AAAAATAAATTCGAGAGGTCAGTGA 57.021 32.000 0.00 0.00 0.00 3.41
598 599 7.602517 AAAATAAATTCGAGAGGTCAGTGAG 57.397 36.000 0.00 0.00 0.00 3.51
599 600 2.663826 AATTCGAGAGGTCAGTGAGC 57.336 50.000 14.56 14.56 0.00 4.26
600 601 1.846007 ATTCGAGAGGTCAGTGAGCT 58.154 50.000 24.35 24.35 43.43 4.09
601 602 0.884514 TTCGAGAGGTCAGTGAGCTG 59.115 55.000 28.66 14.79 40.67 4.24
613 614 5.489792 TCAGTGAGCTGATTAGGTTTTCT 57.510 39.130 0.00 0.00 45.94 2.52
614 615 5.240891 TCAGTGAGCTGATTAGGTTTTCTG 58.759 41.667 0.00 1.43 45.94 3.02
615 616 5.012046 TCAGTGAGCTGATTAGGTTTTCTGA 59.988 40.000 0.00 11.93 45.94 3.27
616 617 5.350914 CAGTGAGCTGATTAGGTTTTCTGAG 59.649 44.000 0.00 0.00 45.28 3.35
617 618 4.633565 GTGAGCTGATTAGGTTTTCTGAGG 59.366 45.833 0.00 0.00 34.13 3.86
618 619 4.195416 GAGCTGATTAGGTTTTCTGAGGG 58.805 47.826 0.00 0.00 34.13 4.30
619 620 3.054065 AGCTGATTAGGTTTTCTGAGGGG 60.054 47.826 0.00 0.00 0.00 4.79
620 621 3.308473 GCTGATTAGGTTTTCTGAGGGGT 60.308 47.826 0.00 0.00 0.00 4.95
621 622 4.518249 CTGATTAGGTTTTCTGAGGGGTC 58.482 47.826 0.00 0.00 0.00 4.46
622 623 3.913799 TGATTAGGTTTTCTGAGGGGTCA 59.086 43.478 0.00 0.00 0.00 4.02
623 624 4.540099 TGATTAGGTTTTCTGAGGGGTCAT 59.460 41.667 0.00 0.00 0.00 3.06
624 625 5.015178 TGATTAGGTTTTCTGAGGGGTCATT 59.985 40.000 0.00 0.00 0.00 2.57
625 626 3.903530 AGGTTTTCTGAGGGGTCATTT 57.096 42.857 0.00 0.00 0.00 2.32
626 627 4.199002 AGGTTTTCTGAGGGGTCATTTT 57.801 40.909 0.00 0.00 0.00 1.82
627 628 4.556697 AGGTTTTCTGAGGGGTCATTTTT 58.443 39.130 0.00 0.00 0.00 1.94
730 731 1.549170 GGTTCCCGAAGAGCTAGAACA 59.451 52.381 0.00 0.00 38.83 3.18
755 756 2.356313 AACACACGAGCCAGAGCG 60.356 61.111 0.00 0.00 46.67 5.03
1254 1300 6.353323 TGGTCTTTCAGTTCTTGTGTTCATA 58.647 36.000 0.00 0.00 0.00 2.15
1259 1305 4.556233 TCAGTTCTTGTGTTCATACTCCG 58.444 43.478 0.00 0.00 0.00 4.63
1276 1322 2.673368 CTCCGTGAAAATGTCAGCCTAC 59.327 50.000 0.00 0.00 36.74 3.18
1296 1349 6.204882 GCCTACTGACATTTAGTTTCTGTGTT 59.795 38.462 0.00 0.00 0.00 3.32
1298 1351 8.926710 CCTACTGACATTTAGTTTCTGTGTTAG 58.073 37.037 0.00 0.00 33.98 2.34
1373 1440 7.164803 TGATGTTTGATGGAGTACATGTACAA 58.835 34.615 32.02 19.85 40.72 2.41
1375 1442 7.994425 TGTTTGATGGAGTACATGTACAATT 57.006 32.000 32.02 15.98 40.72 2.32
1376 1443 8.402798 TGTTTGATGGAGTACATGTACAATTT 57.597 30.769 32.02 15.64 40.72 1.82
1377 1444 8.855110 TGTTTGATGGAGTACATGTACAATTTT 58.145 29.630 32.02 15.29 40.72 1.82
1439 1534 6.202331 TGGGATATCTCAGTTTGGAACTAGA 58.798 40.000 0.00 0.00 40.46 2.43
1453 1548 9.626045 GTTTGGAACTAGAAAATAGAAACATGG 57.374 33.333 0.00 0.00 0.00 3.66
1467 1562 5.075493 AGAAACATGGCATCCTTATCATCC 58.925 41.667 0.00 0.00 0.00 3.51
1468 1563 4.458256 AACATGGCATCCTTATCATCCA 57.542 40.909 0.00 0.00 0.00 3.41
1470 1565 5.006896 ACATGGCATCCTTATCATCCATT 57.993 39.130 0.00 0.00 32.48 3.16
1472 1567 5.842328 ACATGGCATCCTTATCATCCATTTT 59.158 36.000 0.00 0.00 32.48 1.82
1473 1568 5.794726 TGGCATCCTTATCATCCATTTTG 57.205 39.130 0.00 0.00 0.00 2.44
1478 1611 6.516194 GCATCCTTATCATCCATTTTGACTGG 60.516 42.308 0.00 0.00 34.93 4.00
1520 1653 8.258007 ACATATCGGTCATGAGAAACTAGAAAA 58.742 33.333 0.00 0.00 0.00 2.29
1534 1667 7.608376 AGAAACTAGAAAAACTGGCTCCTTATC 59.392 37.037 0.00 0.00 0.00 1.75
1585 1718 8.512966 TCATCCATTTCGGTGTTATTTTATCA 57.487 30.769 0.00 0.00 35.57 2.15
1609 1825 6.994496 CAGGATTCAGGTTAGCTGATTGATAA 59.006 38.462 15.08 0.00 0.00 1.75
1671 1895 6.709018 ATTAATTTAAAGATGGTCACCCGG 57.291 37.500 0.00 0.00 0.00 5.73
1743 1967 5.179182 CAGTTGGCAATTTTATGTTTGACCC 59.821 40.000 1.92 0.00 29.35 4.46
1908 2132 1.654954 TAGCCGCGAGTCCAGAGAAC 61.655 60.000 8.23 0.00 0.00 3.01
1943 2167 2.306805 ACATTTGATGTCAGGGAGCTCA 59.693 45.455 17.19 0.00 39.92 4.26
1950 2174 2.382882 TGTCAGGGAGCTCATCTGTAG 58.617 52.381 25.54 9.69 0.00 2.74
1955 2183 2.769095 AGGGAGCTCATCTGTAGGTTTC 59.231 50.000 17.19 0.00 0.00 2.78
2093 2321 2.157738 AGTTTGTGGCTGATGAAGAGC 58.842 47.619 0.00 0.00 35.57 4.09
2167 2395 2.358737 CCAGTGAGGCAACGGTCC 60.359 66.667 0.00 0.00 46.39 4.46
2282 2510 8.710835 TGTACATCGTATCATGTAACAATGTT 57.289 30.769 3.43 3.43 40.24 2.71
2305 2533 2.487762 CCAAATACGGCTCTTTGAAGCA 59.512 45.455 0.00 0.00 44.35 3.91
2312 2540 1.324736 GGCTCTTTGAAGCACGTATCG 59.675 52.381 0.00 0.00 44.35 2.92
2314 2542 2.412089 GCTCTTTGAAGCACGTATCGTT 59.588 45.455 0.00 0.00 42.05 3.85
2315 2543 3.722082 GCTCTTTGAAGCACGTATCGTTG 60.722 47.826 0.00 0.00 42.05 4.10
2339 2567 8.279970 TGTTTGATTCTAAACCATAGTGGATG 57.720 34.615 2.45 0.00 40.96 3.51
2795 3033 5.535030 AGAAATGGTGAGGTTTAAAGGTCAC 59.465 40.000 16.57 16.57 38.89 3.67
2962 3200 5.598416 TCCAGTCACTGAATACGATCAAT 57.402 39.130 6.30 0.00 32.44 2.57
3016 3254 8.581253 AGAGCAGGCAAGTTTATTTTATAGTT 57.419 30.769 0.00 0.00 0.00 2.24
3148 3386 4.584325 TGCTTAAACTGTCCTTGCAATCTT 59.416 37.500 0.00 0.00 0.00 2.40
3170 3408 4.626042 TCCATTTTTGGTGAAATTGACCG 58.374 39.130 0.00 0.00 36.12 4.79
3356 3595 8.041323 TCTTAATCTCCTAATCAAACAGACCAC 58.959 37.037 0.00 0.00 0.00 4.16
3434 3673 2.034939 TGGCTTAATGCTGCATACATGC 59.965 45.455 16.58 17.95 45.54 4.06
3469 3709 8.741101 TTGATTAAGTGCATGTTATTGTTGAC 57.259 30.769 0.00 0.00 0.00 3.18
3542 3782 2.550277 TGCTACTCCCTCTGATCCAA 57.450 50.000 0.00 0.00 0.00 3.53
3547 3827 5.428457 TGCTACTCCCTCTGATCCAAAATAA 59.572 40.000 0.00 0.00 0.00 1.40
3548 3828 5.994668 GCTACTCCCTCTGATCCAAAATAAG 59.005 44.000 0.00 0.00 0.00 1.73
3549 3829 6.408662 GCTACTCCCTCTGATCCAAAATAAGT 60.409 42.308 0.00 0.00 0.00 2.24
3550 3830 5.749462 ACTCCCTCTGATCCAAAATAAGTG 58.251 41.667 0.00 0.00 0.00 3.16
3551 3831 5.251700 ACTCCCTCTGATCCAAAATAAGTGT 59.748 40.000 0.00 0.00 0.00 3.55
3552 3832 5.745227 TCCCTCTGATCCAAAATAAGTGTC 58.255 41.667 0.00 0.00 0.00 3.67
3553 3833 4.572389 CCCTCTGATCCAAAATAAGTGTCG 59.428 45.833 0.00 0.00 0.00 4.35
3554 3834 4.034510 CCTCTGATCCAAAATAAGTGTCGC 59.965 45.833 0.00 0.00 0.00 5.19
3555 3835 3.616821 TCTGATCCAAAATAAGTGTCGCG 59.383 43.478 0.00 0.00 0.00 5.87
3556 3836 2.675844 TGATCCAAAATAAGTGTCGCGG 59.324 45.455 6.13 0.00 0.00 6.46
3557 3837 2.172851 TCCAAAATAAGTGTCGCGGT 57.827 45.000 6.13 0.00 0.00 5.68
3558 3838 2.496111 TCCAAAATAAGTGTCGCGGTT 58.504 42.857 6.13 0.00 0.00 4.44
3559 3839 2.879646 TCCAAAATAAGTGTCGCGGTTT 59.120 40.909 6.13 0.00 0.00 3.27
3560 3840 3.315749 TCCAAAATAAGTGTCGCGGTTTT 59.684 39.130 6.13 0.00 0.00 2.43
3561 3841 3.423867 CCAAAATAAGTGTCGCGGTTTTG 59.576 43.478 6.13 11.78 36.70 2.44
3562 3842 4.283678 CAAAATAAGTGTCGCGGTTTTGA 58.716 39.130 6.13 0.00 38.26 2.69
3563 3843 4.555348 AAATAAGTGTCGCGGTTTTGAA 57.445 36.364 6.13 0.00 0.00 2.69
3564 3844 3.531262 ATAAGTGTCGCGGTTTTGAAC 57.469 42.857 6.13 0.00 0.00 3.18
3565 3845 1.375551 AAGTGTCGCGGTTTTGAACT 58.624 45.000 6.13 0.00 0.00 3.01
3566 3846 2.228138 AGTGTCGCGGTTTTGAACTA 57.772 45.000 6.13 0.00 0.00 2.24
3567 3847 2.553086 AGTGTCGCGGTTTTGAACTAA 58.447 42.857 6.13 0.00 0.00 2.24
3568 3848 2.542595 AGTGTCGCGGTTTTGAACTAAG 59.457 45.455 6.13 0.00 0.00 2.18
3569 3849 1.868498 TGTCGCGGTTTTGAACTAAGG 59.132 47.619 6.13 0.00 0.00 2.69
3570 3850 1.869132 GTCGCGGTTTTGAACTAAGGT 59.131 47.619 6.13 0.00 0.00 3.50
3571 3851 2.288729 GTCGCGGTTTTGAACTAAGGTT 59.711 45.455 6.13 0.00 38.52 3.50
3572 3852 3.494251 GTCGCGGTTTTGAACTAAGGTTA 59.506 43.478 6.13 0.00 35.58 2.85
3573 3853 3.742369 TCGCGGTTTTGAACTAAGGTTAG 59.258 43.478 6.13 0.00 35.58 2.34
3574 3854 3.495753 CGCGGTTTTGAACTAAGGTTAGT 59.504 43.478 0.00 0.00 45.43 2.24
3586 3866 6.870971 ACTAAGGTTAGTTCAAAATTGCGA 57.129 33.333 0.00 0.00 40.96 5.10
3698 3978 1.618487 TTCTGCAATGCACCATGACA 58.382 45.000 2.72 0.00 33.79 3.58
3756 4036 7.565398 ACTGAAAGAAATCCTAGAGGTATGCTA 59.435 37.037 0.00 0.00 37.43 3.49
3759 4039 7.676683 AAGAAATCCTAGAGGTATGCTAACA 57.323 36.000 0.00 0.00 36.34 2.41
3761 4041 8.958060 AGAAATCCTAGAGGTATGCTAACATA 57.042 34.615 0.00 0.00 37.74 2.29
3762 4042 9.381038 AGAAATCCTAGAGGTATGCTAACATAA 57.619 33.333 0.00 0.00 40.42 1.90
3771 4119 5.940470 AGGTATGCTAACATAATAAGGCTGC 59.060 40.000 0.00 0.00 40.42 5.25
3801 4149 4.479993 ATGCAGAGGCGAGGGTGC 62.480 66.667 0.00 0.00 45.35 5.01
3868 4216 1.001764 CCTCCAGATTGCAGGCACA 60.002 57.895 0.00 0.00 0.00 4.57
3890 4238 1.327764 CCTTAGAGACGCGGAAAATGC 59.672 52.381 12.47 0.00 0.00 3.56
3914 4262 4.565022 TGTTGAGATCTGCGACATTGTAA 58.435 39.130 0.00 0.00 0.00 2.41
3970 4318 1.474855 GCAGGGATCCTCAAGAAGCTC 60.475 57.143 12.58 0.00 0.00 4.09
4195 4543 7.331934 TCTCAGTACAGAAATGTTGAATAGCAC 59.668 37.037 0.00 0.00 0.00 4.40
4236 4585 7.209475 CCATACATTTTATGTCCCCATTTCAC 58.791 38.462 0.00 0.00 43.67 3.18
4256 4605 1.807742 CGGGTGAAAGATAAACGGCAA 59.192 47.619 0.00 0.00 0.00 4.52
4257 4606 2.226912 CGGGTGAAAGATAAACGGCAAA 59.773 45.455 0.00 0.00 0.00 3.68
4283 4640 3.838317 TCTCCAGCATGTACAGTTTACCT 59.162 43.478 0.33 0.00 0.00 3.08
4297 4654 1.308047 TTACCTGTGCTGCAACTGTG 58.692 50.000 2.77 0.00 0.00 3.66
4305 4662 0.034616 GCTGCAACTGTGAGAGGTCT 59.965 55.000 0.00 0.00 0.00 3.85
4308 4665 3.618507 GCTGCAACTGTGAGAGGTCTATT 60.619 47.826 0.00 0.00 0.00 1.73
4309 4666 3.930336 TGCAACTGTGAGAGGTCTATTG 58.070 45.455 0.00 0.00 0.00 1.90
4310 4667 2.675348 GCAACTGTGAGAGGTCTATTGC 59.325 50.000 0.00 0.00 34.98 3.56
4316 4673 3.197766 TGTGAGAGGTCTATTGCCGAAAT 59.802 43.478 0.00 0.00 0.00 2.17
4381 4740 3.243805 ACCTCAGATCTCATGAATCTGCG 60.244 47.826 26.51 23.18 41.01 5.18
4386 4745 4.916831 CAGATCTCATGAATCTGCGACTAC 59.083 45.833 23.13 4.86 35.91 2.73
4419 4779 9.331106 GAGTAACAAGCTTCTTTTAATGTAAGC 57.669 33.333 0.00 0.00 43.66 3.09
4422 4782 7.277174 ACAAGCTTCTTTTAATGTAAGCACT 57.723 32.000 14.77 3.48 45.31 4.40
4493 4960 7.411486 TTGTGAACATTGGAAGTTAAAAGGA 57.589 32.000 0.00 0.00 0.00 3.36
4511 4981 7.396540 AAAAGGATCATCAAACTGACATACC 57.603 36.000 0.00 0.00 0.00 2.73
4534 5004 6.156519 CCATGTACTAAAAGGCCAAAAGTTC 58.843 40.000 5.01 1.40 0.00 3.01
4537 5007 5.889289 TGTACTAAAAGGCCAAAAGTTCTGT 59.111 36.000 5.01 0.00 0.00 3.41
4566 5036 0.036010 AAGAGGACAGCGACCCAATG 60.036 55.000 0.00 0.00 0.00 2.82
4569 5039 1.450312 GGACAGCGACCCAATGAGG 60.450 63.158 0.00 0.00 37.03 3.86
4651 5121 2.769095 GCAGTGAAGGAATCTCTACCCT 59.231 50.000 0.00 0.00 30.87 4.34
4695 5165 6.260936 ACAATAATGGAGAAACATGTCGATCC 59.739 38.462 13.58 13.58 0.00 3.36
4704 5174 3.298686 ACATGTCGATCCTACCTCTGA 57.701 47.619 0.00 0.00 0.00 3.27
4707 5177 4.466370 ACATGTCGATCCTACCTCTGAAAA 59.534 41.667 0.00 0.00 0.00 2.29
4713 5183 1.068055 TCCTACCTCTGAAAACGACGC 60.068 52.381 0.00 0.00 0.00 5.19
4715 5185 1.719780 CTACCTCTGAAAACGACGCAC 59.280 52.381 0.00 0.00 0.00 5.34
4725 5329 3.152703 CGACGCACGGGTTGTAAG 58.847 61.111 0.00 0.00 38.46 2.34
4759 5363 5.467735 CCATATCGATTGCTCTTGTTCATGA 59.532 40.000 1.71 0.00 0.00 3.07
4769 5373 4.022068 GCTCTTGTTCATGACCCAATTCAA 60.022 41.667 0.00 0.00 0.00 2.69
4772 5376 4.804868 TGTTCATGACCCAATTCAATGG 57.195 40.909 0.00 0.00 40.35 3.16
4777 5381 5.192927 TCATGACCCAATTCAATGGTACTC 58.807 41.667 0.00 0.00 38.91 2.59
4781 5385 5.168647 ACCCAATTCAATGGTACTCGTAA 57.831 39.130 0.00 0.00 38.91 3.18
4782 5386 5.751586 ACCCAATTCAATGGTACTCGTAAT 58.248 37.500 0.00 0.00 38.91 1.89
4783 5387 6.184789 ACCCAATTCAATGGTACTCGTAATT 58.815 36.000 0.00 0.00 38.91 1.40
4785 5389 7.281549 ACCCAATTCAATGGTACTCGTAATTAC 59.718 37.037 5.47 5.47 38.91 1.89
4786 5390 7.281324 CCCAATTCAATGGTACTCGTAATTACA 59.719 37.037 15.67 2.57 38.91 2.41
4787 5391 8.670135 CCAATTCAATGGTACTCGTAATTACAA 58.330 33.333 15.67 0.00 35.65 2.41
4791 5395 8.259049 TCAATGGTACTCGTAATTACAAAAGG 57.741 34.615 15.67 0.00 0.00 3.11
4792 5396 7.879160 TCAATGGTACTCGTAATTACAAAAGGT 59.121 33.333 15.67 8.29 0.00 3.50
4794 5398 9.895138 AATGGTACTCGTAATTACAAAAGGTAT 57.105 29.630 15.67 0.27 0.00 2.73
4796 5400 7.765360 TGGTACTCGTAATTACAAAAGGTATGG 59.235 37.037 15.67 0.00 0.00 2.74
4797 5401 7.981225 GGTACTCGTAATTACAAAAGGTATGGA 59.019 37.037 15.67 0.30 0.00 3.41
4802 5406 8.938906 TCGTAATTACAAAAGGTATGGACTTTC 58.061 33.333 15.67 0.00 37.18 2.62
4839 5844 2.084546 GTCACTGCAAATACCACCTCC 58.915 52.381 0.00 0.00 0.00 4.30
4840 5845 1.985159 TCACTGCAAATACCACCTCCT 59.015 47.619 0.00 0.00 0.00 3.69
4841 5846 2.375174 TCACTGCAAATACCACCTCCTT 59.625 45.455 0.00 0.00 0.00 3.36
4843 5848 4.042311 TCACTGCAAATACCACCTCCTTTA 59.958 41.667 0.00 0.00 0.00 1.85
4844 5849 4.156008 CACTGCAAATACCACCTCCTTTAC 59.844 45.833 0.00 0.00 0.00 2.01
4845 5850 4.042934 ACTGCAAATACCACCTCCTTTACT 59.957 41.667 0.00 0.00 0.00 2.24
4847 5852 6.129414 TGCAAATACCACCTCCTTTACTTA 57.871 37.500 0.00 0.00 0.00 2.24
4850 5855 6.602009 GCAAATACCACCTCCTTTACTTACAT 59.398 38.462 0.00 0.00 0.00 2.29
4851 5856 7.415206 GCAAATACCACCTCCTTTACTTACATG 60.415 40.741 0.00 0.00 0.00 3.21
4853 5858 7.691993 ATACCACCTCCTTTACTTACATGAT 57.308 36.000 0.00 0.00 0.00 2.45
4854 5859 6.388619 ACCACCTCCTTTACTTACATGATT 57.611 37.500 0.00 0.00 0.00 2.57
4856 5861 8.102484 ACCACCTCCTTTACTTACATGATTAT 57.898 34.615 0.00 0.00 0.00 1.28
4857 5862 8.557450 ACCACCTCCTTTACTTACATGATTATT 58.443 33.333 0.00 0.00 0.00 1.40
4858 5863 8.840321 CCACCTCCTTTACTTACATGATTATTG 58.160 37.037 0.00 0.00 0.00 1.90
4870 5875 9.994432 CTTACATGATTATTGTGTTCTTTCTCC 57.006 33.333 0.00 0.00 0.00 3.71
4871 5876 9.513906 TTACATGATTATTGTGTTCTTTCTCCA 57.486 29.630 0.00 0.00 0.00 3.86
4872 5877 8.048534 ACATGATTATTGTGTTCTTTCTCCAG 57.951 34.615 0.00 0.00 0.00 3.86
4873 5878 7.884877 ACATGATTATTGTGTTCTTTCTCCAGA 59.115 33.333 0.00 0.00 0.00 3.86
4874 5879 7.912056 TGATTATTGTGTTCTTTCTCCAGAG 57.088 36.000 0.00 0.00 0.00 3.35
4875 5880 7.679783 TGATTATTGTGTTCTTTCTCCAGAGA 58.320 34.615 0.00 0.00 35.27 3.10
4876 5881 7.821359 TGATTATTGTGTTCTTTCTCCAGAGAG 59.179 37.037 0.00 0.00 41.93 3.20
4917 6138 1.122019 ACTGTCAGGCCTCCTTCGTT 61.122 55.000 0.00 0.00 0.00 3.85
4948 6169 3.937079 TCAGATACTGACATTGCAGCAAG 59.063 43.478 14.47 8.34 39.51 4.01
4953 6174 0.961019 TGACATTGCAGCAAGGGAAC 59.039 50.000 23.03 14.02 28.83 3.62
4982 6205 1.398390 GTTGTGGCCTTTCTATGAGCG 59.602 52.381 3.32 0.00 0.00 5.03
4997 6220 2.417719 TGAGCGGAAAGAAAGAGAAGC 58.582 47.619 0.00 0.00 0.00 3.86
5001 6224 2.350868 GCGGAAAGAAAGAGAAGCAACC 60.351 50.000 0.00 0.00 0.00 3.77
5002 6225 2.226674 CGGAAAGAAAGAGAAGCAACCC 59.773 50.000 0.00 0.00 0.00 4.11
5003 6226 3.222603 GGAAAGAAAGAGAAGCAACCCA 58.777 45.455 0.00 0.00 0.00 4.51
5004 6227 3.254411 GGAAAGAAAGAGAAGCAACCCAG 59.746 47.826 0.00 0.00 0.00 4.45
5006 6229 4.379302 AAGAAAGAGAAGCAACCCAGAT 57.621 40.909 0.00 0.00 0.00 2.90
5008 6231 5.096443 AGAAAGAGAAGCAACCCAGATAG 57.904 43.478 0.00 0.00 0.00 2.08
5009 6232 2.998316 AGAGAAGCAACCCAGATAGC 57.002 50.000 0.00 0.00 0.00 2.97
5012 6245 1.630369 AGAAGCAACCCAGATAGCACA 59.370 47.619 0.00 0.00 0.00 4.57
5028 6261 6.713903 AGATAGCACACCCATATTTCATTCTG 59.286 38.462 0.00 0.00 0.00 3.02
5059 6293 2.532317 GCACGAGCGAGATCTTCTTTAC 59.468 50.000 0.00 0.00 0.00 2.01
5074 6308 9.788960 GATCTTCTTTACTTCAAAAAGTGTGTT 57.211 29.630 1.17 0.00 45.37 3.32
5075 6309 8.964420 TCTTCTTTACTTCAAAAAGTGTGTTG 57.036 30.769 1.17 0.00 45.37 3.33
5079 6313 3.584834 ACTTCAAAAAGTGTGTTGGCAC 58.415 40.909 0.00 0.00 44.13 5.01
5080 6314 3.916933 ACTTCAAAAAGTGTGTTGGCACG 60.917 43.478 0.00 0.00 44.13 5.34
5082 6316 7.826339 ACTTCAAAAAGTGTGTTGGCACGAG 62.826 44.000 0.00 0.00 44.13 4.18
5087 6321 3.414700 GTGTTGGCACGAGCGGAG 61.415 66.667 0.00 0.00 43.41 4.63
5106 6340 5.163834 GCGGAGTATTGAAAATACGGAAACA 60.164 40.000 4.87 0.00 0.00 2.83
5120 6354 2.729467 CGGAAACATTCGCGCCAAATTA 60.729 45.455 0.00 0.00 0.00 1.40
5150 6384 2.361757 CTGCACAGGACACAAAAATGGA 59.638 45.455 0.00 0.00 0.00 3.41
5153 6387 4.586421 TGCACAGGACACAAAAATGGATAA 59.414 37.500 0.00 0.00 0.00 1.75
5154 6388 5.163513 GCACAGGACACAAAAATGGATAAG 58.836 41.667 0.00 0.00 0.00 1.73
5155 6389 5.163513 CACAGGACACAAAAATGGATAAGC 58.836 41.667 0.00 0.00 0.00 3.09
5156 6390 5.047802 CACAGGACACAAAAATGGATAAGCT 60.048 40.000 0.00 0.00 0.00 3.74
5157 6391 5.539955 ACAGGACACAAAAATGGATAAGCTT 59.460 36.000 3.48 3.48 0.00 3.74
5158 6392 5.865552 CAGGACACAAAAATGGATAAGCTTG 59.134 40.000 9.86 0.00 0.00 4.01
5159 6393 5.539955 AGGACACAAAAATGGATAAGCTTGT 59.460 36.000 9.86 0.92 0.00 3.16
5160 6394 5.863935 GGACACAAAAATGGATAAGCTTGTC 59.136 40.000 14.37 14.37 0.00 3.18
5161 6395 5.783111 ACACAAAAATGGATAAGCTTGTCC 58.217 37.500 29.81 29.81 38.77 4.02
5162 6396 5.539955 ACACAAAAATGGATAAGCTTGTCCT 59.460 36.000 33.89 20.95 39.03 3.85
5163 6397 6.719370 ACACAAAAATGGATAAGCTTGTCCTA 59.281 34.615 33.89 23.57 39.03 2.94
5164 6398 7.397192 ACACAAAAATGGATAAGCTTGTCCTAT 59.603 33.333 33.89 24.46 39.03 2.57
5165 6399 7.917505 CACAAAAATGGATAAGCTTGTCCTATC 59.082 37.037 33.89 18.03 39.03 2.08
5166 6400 7.836183 ACAAAAATGGATAAGCTTGTCCTATCT 59.164 33.333 33.89 18.38 39.03 1.98
5167 6401 8.689972 CAAAAATGGATAAGCTTGTCCTATCTT 58.310 33.333 33.89 21.95 39.03 2.40
5168 6402 8.829373 AAAATGGATAAGCTTGTCCTATCTTT 57.171 30.769 33.89 24.85 39.03 2.52
5169 6403 8.829373 AAATGGATAAGCTTGTCCTATCTTTT 57.171 30.769 33.89 23.16 39.03 2.27
5170 6404 9.920946 AAATGGATAAGCTTGTCCTATCTTTTA 57.079 29.630 33.89 17.50 39.03 1.52
5171 6405 8.910351 ATGGATAAGCTTGTCCTATCTTTTAC 57.090 34.615 33.89 11.48 39.03 2.01
5172 6406 7.857456 TGGATAAGCTTGTCCTATCTTTTACA 58.143 34.615 33.89 13.87 39.03 2.41
5173 6407 7.769044 TGGATAAGCTTGTCCTATCTTTTACAC 59.231 37.037 33.89 10.87 39.03 2.90
5174 6408 7.226918 GGATAAGCTTGTCCTATCTTTTACACC 59.773 40.741 29.38 3.86 35.76 4.16
5175 6409 4.844884 AGCTTGTCCTATCTTTTACACCC 58.155 43.478 0.00 0.00 0.00 4.61
5176 6410 4.536489 AGCTTGTCCTATCTTTTACACCCT 59.464 41.667 0.00 0.00 0.00 4.34
5177 6411 4.876679 GCTTGTCCTATCTTTTACACCCTC 59.123 45.833 0.00 0.00 0.00 4.30
5178 6412 4.730949 TGTCCTATCTTTTACACCCTCG 57.269 45.455 0.00 0.00 0.00 4.63
5179 6413 3.449737 TGTCCTATCTTTTACACCCTCGG 59.550 47.826 0.00 0.00 0.00 4.63
5180 6414 3.450096 GTCCTATCTTTTACACCCTCGGT 59.550 47.826 0.00 0.00 35.62 4.69
5181 6415 4.646492 GTCCTATCTTTTACACCCTCGGTA 59.354 45.833 0.00 0.00 32.11 4.02
5182 6416 5.303845 GTCCTATCTTTTACACCCTCGGTAT 59.696 44.000 0.00 0.00 32.11 2.73
5183 6417 5.537674 TCCTATCTTTTACACCCTCGGTATC 59.462 44.000 0.00 0.00 32.11 2.24
5184 6418 5.303589 CCTATCTTTTACACCCTCGGTATCA 59.696 44.000 0.00 0.00 32.11 2.15
5185 6419 4.730949 TCTTTTACACCCTCGGTATCAG 57.269 45.455 0.00 0.00 32.11 2.90
5186 6420 2.973694 TTTACACCCTCGGTATCAGC 57.026 50.000 0.00 0.00 32.11 4.26
5187 6421 1.855295 TTACACCCTCGGTATCAGCA 58.145 50.000 0.00 0.00 32.11 4.41
5188 6422 1.399714 TACACCCTCGGTATCAGCAG 58.600 55.000 0.00 0.00 32.11 4.24
5189 6423 1.227380 CACCCTCGGTATCAGCAGC 60.227 63.158 0.00 0.00 32.11 5.25
5190 6424 1.685765 ACCCTCGGTATCAGCAGCA 60.686 57.895 0.00 0.00 32.11 4.41
5191 6425 1.068753 CCCTCGGTATCAGCAGCAG 59.931 63.158 0.00 0.00 0.00 4.24
5192 6426 1.680522 CCCTCGGTATCAGCAGCAGT 61.681 60.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.454585 CGATCAGCATTTTATCATACACATTTT 57.545 29.630 0.00 0.00 0.00 1.82
87 88 8.623903 ACGATCAGCATTTTATCATACACATTT 58.376 29.630 0.00 0.00 0.00 2.32
88 89 8.071967 CACGATCAGCATTTTATCATACACATT 58.928 33.333 0.00 0.00 0.00 2.71
89 90 7.227314 ACACGATCAGCATTTTATCATACACAT 59.773 33.333 0.00 0.00 0.00 3.21
90 91 6.538381 ACACGATCAGCATTTTATCATACACA 59.462 34.615 0.00 0.00 0.00 3.72
91 92 6.948353 ACACGATCAGCATTTTATCATACAC 58.052 36.000 0.00 0.00 0.00 2.90
92 93 8.831715 ATACACGATCAGCATTTTATCATACA 57.168 30.769 0.00 0.00 0.00 2.29
96 97 9.103861 TGTAAATACACGATCAGCATTTTATCA 57.896 29.630 0.00 0.00 0.00 2.15
97 98 9.929722 TTGTAAATACACGATCAGCATTTTATC 57.070 29.630 0.00 0.00 35.64 1.75
100 101 9.638239 ATTTTGTAAATACACGATCAGCATTTT 57.362 25.926 0.00 0.00 35.64 1.82
101 102 9.075519 CATTTTGTAAATACACGATCAGCATTT 57.924 29.630 0.00 0.00 35.64 2.32
102 103 8.243426 ACATTTTGTAAATACACGATCAGCATT 58.757 29.630 0.00 0.00 35.64 3.56
103 104 7.761409 ACATTTTGTAAATACACGATCAGCAT 58.239 30.769 0.00 0.00 35.64 3.79
104 105 7.139896 ACATTTTGTAAATACACGATCAGCA 57.860 32.000 0.00 0.00 35.64 4.41
105 106 9.549509 TTAACATTTTGTAAATACACGATCAGC 57.450 29.630 0.00 0.00 35.64 4.26
142 143 7.896811 TCTCGTATACATCAGGAATATTTGCT 58.103 34.615 3.32 0.00 0.00 3.91
143 144 8.534333 TTCTCGTATACATCAGGAATATTTGC 57.466 34.615 3.32 0.00 0.00 3.68
148 149 9.489084 CCATTTTTCTCGTATACATCAGGAATA 57.511 33.333 3.32 0.00 0.00 1.75
149 150 8.210946 TCCATTTTTCTCGTATACATCAGGAAT 58.789 33.333 3.32 0.00 0.00 3.01
150 151 7.561251 TCCATTTTTCTCGTATACATCAGGAA 58.439 34.615 3.32 0.00 0.00 3.36
151 152 7.069455 TCTCCATTTTTCTCGTATACATCAGGA 59.931 37.037 3.32 0.00 0.00 3.86
152 153 7.210174 TCTCCATTTTTCTCGTATACATCAGG 58.790 38.462 3.32 0.00 0.00 3.86
153 154 7.095857 GCTCTCCATTTTTCTCGTATACATCAG 60.096 40.741 3.32 0.00 0.00 2.90
154 155 6.701841 GCTCTCCATTTTTCTCGTATACATCA 59.298 38.462 3.32 0.00 0.00 3.07
155 156 6.701841 TGCTCTCCATTTTTCTCGTATACATC 59.298 38.462 3.32 0.00 0.00 3.06
156 157 6.582636 TGCTCTCCATTTTTCTCGTATACAT 58.417 36.000 3.32 0.00 0.00 2.29
157 158 5.972935 TGCTCTCCATTTTTCTCGTATACA 58.027 37.500 3.32 0.00 0.00 2.29
158 159 6.564873 GCATGCTCTCCATTTTTCTCGTATAC 60.565 42.308 11.37 0.00 29.71 1.47
159 160 5.466728 GCATGCTCTCCATTTTTCTCGTATA 59.533 40.000 11.37 0.00 29.71 1.47
160 161 4.274459 GCATGCTCTCCATTTTTCTCGTAT 59.726 41.667 11.37 0.00 29.71 3.06
161 162 3.623060 GCATGCTCTCCATTTTTCTCGTA 59.377 43.478 11.37 0.00 29.71 3.43
162 163 2.421424 GCATGCTCTCCATTTTTCTCGT 59.579 45.455 11.37 0.00 29.71 4.18
163 164 2.421073 TGCATGCTCTCCATTTTTCTCG 59.579 45.455 20.33 0.00 29.71 4.04
164 165 4.650754 ATGCATGCTCTCCATTTTTCTC 57.349 40.909 20.33 0.00 29.71 2.87
165 166 5.298777 GTCTATGCATGCTCTCCATTTTTCT 59.701 40.000 20.33 0.00 29.71 2.52
166 167 5.517904 GTCTATGCATGCTCTCCATTTTTC 58.482 41.667 20.33 0.00 29.71 2.29
167 168 4.036027 CGTCTATGCATGCTCTCCATTTTT 59.964 41.667 20.33 0.00 29.71 1.94
168 169 3.562973 CGTCTATGCATGCTCTCCATTTT 59.437 43.478 20.33 0.00 29.71 1.82
169 170 3.136763 CGTCTATGCATGCTCTCCATTT 58.863 45.455 20.33 0.00 29.71 2.32
170 171 2.366590 TCGTCTATGCATGCTCTCCATT 59.633 45.455 20.33 0.00 29.71 3.16
171 172 1.966354 TCGTCTATGCATGCTCTCCAT 59.034 47.619 20.33 5.95 33.39 3.41
172 173 1.402787 TCGTCTATGCATGCTCTCCA 58.597 50.000 20.33 0.00 0.00 3.86
173 174 2.515926 TTCGTCTATGCATGCTCTCC 57.484 50.000 20.33 2.19 0.00 3.71
174 175 4.053983 TCAATTCGTCTATGCATGCTCTC 58.946 43.478 20.33 4.26 0.00 3.20
175 176 4.056740 CTCAATTCGTCTATGCATGCTCT 58.943 43.478 20.33 8.90 0.00 4.09
176 177 3.363772 GCTCAATTCGTCTATGCATGCTC 60.364 47.826 20.33 3.56 0.00 4.26
177 178 2.547211 GCTCAATTCGTCTATGCATGCT 59.453 45.455 20.33 7.07 0.00 3.79
178 179 2.288729 TGCTCAATTCGTCTATGCATGC 59.711 45.455 11.82 11.82 0.00 4.06
179 180 4.744136 ATGCTCAATTCGTCTATGCATG 57.256 40.909 10.16 0.00 38.10 4.06
180 181 6.866010 TTTATGCTCAATTCGTCTATGCAT 57.134 33.333 3.79 3.79 41.60 3.96
181 182 6.676237 TTTTATGCTCAATTCGTCTATGCA 57.324 33.333 0.00 0.00 0.00 3.96
182 183 9.831737 ATATTTTTATGCTCAATTCGTCTATGC 57.168 29.630 0.00 0.00 0.00 3.14
267 268 8.231837 GCCAGAAACATATTTTCTACACGTTTA 58.768 33.333 10.56 0.00 36.69 2.01
268 269 7.081976 GCCAGAAACATATTTTCTACACGTTT 58.918 34.615 10.56 0.00 36.69 3.60
269 270 6.205853 TGCCAGAAACATATTTTCTACACGTT 59.794 34.615 10.56 0.00 36.69 3.99
270 271 5.703592 TGCCAGAAACATATTTTCTACACGT 59.296 36.000 10.56 0.00 36.69 4.49
271 272 6.176975 TGCCAGAAACATATTTTCTACACG 57.823 37.500 10.56 0.00 36.69 4.49
275 276 9.214957 CGGTATATGCCAGAAACATATTTTCTA 57.785 33.333 10.70 1.00 40.37 2.10
276 277 7.936847 TCGGTATATGCCAGAAACATATTTTCT 59.063 33.333 10.70 6.92 40.37 2.52
277 278 8.094798 TCGGTATATGCCAGAAACATATTTTC 57.905 34.615 10.70 3.55 40.37 2.29
278 279 8.458573 TTCGGTATATGCCAGAAACATATTTT 57.541 30.769 10.70 0.00 40.37 1.82
279 280 8.458573 TTTCGGTATATGCCAGAAACATATTT 57.541 30.769 18.46 0.00 40.37 1.40
280 281 8.458573 TTTTCGGTATATGCCAGAAACATATT 57.541 30.769 20.56 0.00 40.37 1.28
281 282 8.514594 CATTTTCGGTATATGCCAGAAACATAT 58.485 33.333 20.56 13.42 42.11 1.78
282 283 7.500892 ACATTTTCGGTATATGCCAGAAACATA 59.499 33.333 20.56 12.28 33.93 2.29
283 284 6.321181 ACATTTTCGGTATATGCCAGAAACAT 59.679 34.615 20.56 16.04 33.93 2.71
284 285 5.650266 ACATTTTCGGTATATGCCAGAAACA 59.350 36.000 20.56 15.09 33.93 2.83
285 286 6.131544 ACATTTTCGGTATATGCCAGAAAC 57.868 37.500 20.56 0.00 33.93 2.78
286 287 9.214957 CTATACATTTTCGGTATATGCCAGAAA 57.785 33.333 18.46 18.46 34.26 2.52
287 288 8.372459 ACTATACATTTTCGGTATATGCCAGAA 58.628 33.333 10.70 10.95 34.26 3.02
288 289 7.817478 CACTATACATTTTCGGTATATGCCAGA 59.183 37.037 10.70 5.58 34.26 3.86
289 290 7.602644 ACACTATACATTTTCGGTATATGCCAG 59.397 37.037 10.70 3.29 34.26 4.85
290 291 7.386573 CACACTATACATTTTCGGTATATGCCA 59.613 37.037 10.70 0.00 34.26 4.92
291 292 7.386848 ACACACTATACATTTTCGGTATATGCC 59.613 37.037 0.00 0.00 34.26 4.40
292 293 8.306680 ACACACTATACATTTTCGGTATATGC 57.693 34.615 0.00 0.00 34.26 3.14
297 298 9.872721 TTTCATACACACTATACATTTTCGGTA 57.127 29.630 0.00 0.00 0.00 4.02
298 299 8.780846 TTTCATACACACTATACATTTTCGGT 57.219 30.769 0.00 0.00 0.00 4.69
343 344 2.912295 CCACCATTCCCCTTCCATTTTT 59.088 45.455 0.00 0.00 0.00 1.94
344 345 2.158019 ACCACCATTCCCCTTCCATTTT 60.158 45.455 0.00 0.00 0.00 1.82
345 346 1.436752 ACCACCATTCCCCTTCCATTT 59.563 47.619 0.00 0.00 0.00 2.32
346 347 1.092549 ACCACCATTCCCCTTCCATT 58.907 50.000 0.00 0.00 0.00 3.16
347 348 1.994399 TACCACCATTCCCCTTCCAT 58.006 50.000 0.00 0.00 0.00 3.41
348 349 1.761711 TTACCACCATTCCCCTTCCA 58.238 50.000 0.00 0.00 0.00 3.53
349 350 2.243736 TGATTACCACCATTCCCCTTCC 59.756 50.000 0.00 0.00 0.00 3.46
350 351 3.662759 TGATTACCACCATTCCCCTTC 57.337 47.619 0.00 0.00 0.00 3.46
351 352 3.793827 AGATGATTACCACCATTCCCCTT 59.206 43.478 0.00 0.00 0.00 3.95
352 353 3.407209 AGATGATTACCACCATTCCCCT 58.593 45.455 0.00 0.00 0.00 4.79
353 354 3.884037 AGATGATTACCACCATTCCCC 57.116 47.619 0.00 0.00 0.00 4.81
354 355 7.004086 TCAAATAGATGATTACCACCATTCCC 58.996 38.462 0.00 0.00 0.00 3.97
355 356 8.463930 TTCAAATAGATGATTACCACCATTCC 57.536 34.615 0.00 0.00 0.00 3.01
452 453 9.614792 AGGCGAGATTACTTATGACTAAAATTT 57.385 29.630 0.00 0.00 0.00 1.82
453 454 9.614792 AAGGCGAGATTACTTATGACTAAAATT 57.385 29.630 0.00 0.00 0.00 1.82
454 455 9.614792 AAAGGCGAGATTACTTATGACTAAAAT 57.385 29.630 0.00 0.00 0.00 1.82
455 456 9.444600 AAAAGGCGAGATTACTTATGACTAAAA 57.555 29.630 0.00 0.00 0.00 1.52
456 457 9.095065 GAAAAGGCGAGATTACTTATGACTAAA 57.905 33.333 0.00 0.00 0.00 1.85
457 458 7.434307 CGAAAAGGCGAGATTACTTATGACTAA 59.566 37.037 0.00 0.00 0.00 2.24
458 459 6.916387 CGAAAAGGCGAGATTACTTATGACTA 59.084 38.462 0.00 0.00 0.00 2.59
459 460 5.749109 CGAAAAGGCGAGATTACTTATGACT 59.251 40.000 0.00 0.00 0.00 3.41
460 461 5.519206 ACGAAAAGGCGAGATTACTTATGAC 59.481 40.000 0.00 0.00 34.83 3.06
461 462 5.657474 ACGAAAAGGCGAGATTACTTATGA 58.343 37.500 0.00 0.00 34.83 2.15
462 463 5.518847 TGACGAAAAGGCGAGATTACTTATG 59.481 40.000 0.00 0.00 34.83 1.90
463 464 5.519206 GTGACGAAAAGGCGAGATTACTTAT 59.481 40.000 0.00 0.00 34.83 1.73
464 465 4.860907 GTGACGAAAAGGCGAGATTACTTA 59.139 41.667 0.00 0.00 34.83 2.24
465 466 3.678548 GTGACGAAAAGGCGAGATTACTT 59.321 43.478 0.00 0.00 34.83 2.24
466 467 3.251571 GTGACGAAAAGGCGAGATTACT 58.748 45.455 0.00 0.00 34.83 2.24
467 468 2.027688 CGTGACGAAAAGGCGAGATTAC 59.972 50.000 0.00 0.00 34.83 1.89
468 469 2.256174 CGTGACGAAAAGGCGAGATTA 58.744 47.619 0.00 0.00 34.83 1.75
469 470 1.068474 CGTGACGAAAAGGCGAGATT 58.932 50.000 0.00 0.00 34.83 2.40
470 471 1.352156 GCGTGACGAAAAGGCGAGAT 61.352 55.000 10.10 0.00 34.83 2.75
471 472 2.019951 GCGTGACGAAAAGGCGAGA 61.020 57.895 10.10 0.00 34.83 4.04
472 473 2.470286 GCGTGACGAAAAGGCGAG 59.530 61.111 10.10 0.00 34.83 5.03
482 483 1.872234 CTACATGTCCCGCGTGACG 60.872 63.158 16.80 0.00 38.11 4.35
483 484 1.518572 CCTACATGTCCCGCGTGAC 60.519 63.158 15.16 15.16 37.53 3.67
484 485 1.040893 ATCCTACATGTCCCGCGTGA 61.041 55.000 0.00 0.00 37.53 4.35
485 486 0.179084 AATCCTACATGTCCCGCGTG 60.179 55.000 0.00 0.00 39.90 5.34
486 487 0.179084 CAATCCTACATGTCCCGCGT 60.179 55.000 0.00 0.00 0.00 6.01
487 488 0.179084 ACAATCCTACATGTCCCGCG 60.179 55.000 0.00 0.00 0.00 6.46
488 489 2.548067 CCTACAATCCTACATGTCCCGC 60.548 54.545 0.00 0.00 0.00 6.13
489 490 2.698797 ACCTACAATCCTACATGTCCCG 59.301 50.000 0.00 0.00 0.00 5.14
490 491 3.744530 GCACCTACAATCCTACATGTCCC 60.745 52.174 0.00 0.00 0.00 4.46
491 492 3.467803 GCACCTACAATCCTACATGTCC 58.532 50.000 0.00 0.00 0.00 4.02
492 493 3.118408 TGGCACCTACAATCCTACATGTC 60.118 47.826 0.00 0.00 0.00 3.06
493 494 2.843730 TGGCACCTACAATCCTACATGT 59.156 45.455 2.69 2.69 0.00 3.21
494 495 3.206150 GTGGCACCTACAATCCTACATG 58.794 50.000 6.29 0.00 0.00 3.21
495 496 2.158957 CGTGGCACCTACAATCCTACAT 60.159 50.000 12.86 0.00 0.00 2.29
496 497 1.206132 CGTGGCACCTACAATCCTACA 59.794 52.381 12.86 0.00 0.00 2.74
497 498 1.472728 CCGTGGCACCTACAATCCTAC 60.473 57.143 12.86 0.00 0.00 3.18
498 499 0.828022 CCGTGGCACCTACAATCCTA 59.172 55.000 12.86 0.00 0.00 2.94
499 500 1.198759 ACCGTGGCACCTACAATCCT 61.199 55.000 12.86 0.00 0.00 3.24
500 501 1.024579 CACCGTGGCACCTACAATCC 61.025 60.000 12.86 0.00 0.00 3.01
501 502 1.024579 CCACCGTGGCACCTACAATC 61.025 60.000 12.86 0.00 0.00 2.67
502 503 1.002624 CCACCGTGGCACCTACAAT 60.003 57.895 12.86 0.00 0.00 2.71
503 504 2.428187 CCACCGTGGCACCTACAA 59.572 61.111 12.86 0.00 0.00 2.41
521 522 3.716006 CTGCACACTCGCCGGTTG 61.716 66.667 1.90 0.00 0.00 3.77
522 523 4.235762 ACTGCACACTCGCCGGTT 62.236 61.111 1.90 0.00 0.00 4.44
523 524 4.969196 CACTGCACACTCGCCGGT 62.969 66.667 1.90 0.00 0.00 5.28
527 528 4.017877 GTGGCACTGCACACTCGC 62.018 66.667 11.13 0.00 34.84 5.03
528 529 3.705638 CGTGGCACTGCACACTCG 61.706 66.667 16.72 0.00 35.51 4.18
529 530 1.714899 AAACGTGGCACTGCACACTC 61.715 55.000 16.72 0.00 35.51 3.51
530 531 1.714899 GAAACGTGGCACTGCACACT 61.715 55.000 16.72 3.22 35.51 3.55
531 532 1.298339 GAAACGTGGCACTGCACAC 60.298 57.895 16.72 7.80 0.00 3.82
532 533 1.451207 AGAAACGTGGCACTGCACA 60.451 52.632 16.72 0.00 0.00 4.57
533 534 1.009675 CAGAAACGTGGCACTGCAC 60.010 57.895 16.72 4.97 0.00 4.57
534 535 0.746204 TTCAGAAACGTGGCACTGCA 60.746 50.000 16.72 0.00 0.00 4.41
535 536 0.380378 TTTCAGAAACGTGGCACTGC 59.620 50.000 16.72 0.00 0.00 4.40
536 537 4.481930 TTATTTCAGAAACGTGGCACTG 57.518 40.909 16.72 11.66 0.00 3.66
537 538 5.705609 AATTATTTCAGAAACGTGGCACT 57.294 34.783 16.72 0.00 0.00 4.40
538 539 6.763303 AAAATTATTTCAGAAACGTGGCAC 57.237 33.333 7.79 7.79 0.00 5.01
573 574 7.361286 GCTCACTGACCTCTCGAATTTATTTTT 60.361 37.037 0.00 0.00 0.00 1.94
574 575 6.092807 GCTCACTGACCTCTCGAATTTATTTT 59.907 38.462 0.00 0.00 0.00 1.82
575 576 5.582665 GCTCACTGACCTCTCGAATTTATTT 59.417 40.000 0.00 0.00 0.00 1.40
576 577 5.105146 AGCTCACTGACCTCTCGAATTTATT 60.105 40.000 0.00 0.00 0.00 1.40
577 578 4.404073 AGCTCACTGACCTCTCGAATTTAT 59.596 41.667 0.00 0.00 0.00 1.40
578 579 3.764434 AGCTCACTGACCTCTCGAATTTA 59.236 43.478 0.00 0.00 0.00 1.40
579 580 2.564947 AGCTCACTGACCTCTCGAATTT 59.435 45.455 0.00 0.00 0.00 1.82
580 581 2.175202 AGCTCACTGACCTCTCGAATT 58.825 47.619 0.00 0.00 0.00 2.17
581 582 1.846007 AGCTCACTGACCTCTCGAAT 58.154 50.000 0.00 0.00 0.00 3.34
582 583 3.348151 AGCTCACTGACCTCTCGAA 57.652 52.632 0.00 0.00 0.00 3.71
592 593 5.240891 TCAGAAAACCTAATCAGCTCACTG 58.759 41.667 0.00 0.00 45.95 3.66
593 594 5.486526 CTCAGAAAACCTAATCAGCTCACT 58.513 41.667 0.00 0.00 0.00 3.41
594 595 4.633565 CCTCAGAAAACCTAATCAGCTCAC 59.366 45.833 0.00 0.00 0.00 3.51
595 596 4.323792 CCCTCAGAAAACCTAATCAGCTCA 60.324 45.833 0.00 0.00 0.00 4.26
596 597 4.195416 CCCTCAGAAAACCTAATCAGCTC 58.805 47.826 0.00 0.00 0.00 4.09
597 598 3.054065 CCCCTCAGAAAACCTAATCAGCT 60.054 47.826 0.00 0.00 0.00 4.24
598 599 3.282885 CCCCTCAGAAAACCTAATCAGC 58.717 50.000 0.00 0.00 0.00 4.26
599 600 4.019321 TGACCCCTCAGAAAACCTAATCAG 60.019 45.833 0.00 0.00 0.00 2.90
600 601 3.913799 TGACCCCTCAGAAAACCTAATCA 59.086 43.478 0.00 0.00 0.00 2.57
601 602 4.569719 TGACCCCTCAGAAAACCTAATC 57.430 45.455 0.00 0.00 0.00 1.75
602 603 5.536497 AATGACCCCTCAGAAAACCTAAT 57.464 39.130 0.00 0.00 0.00 1.73
603 604 5.333566 AAATGACCCCTCAGAAAACCTAA 57.666 39.130 0.00 0.00 0.00 2.69
604 605 5.333566 AAAATGACCCCTCAGAAAACCTA 57.666 39.130 0.00 0.00 0.00 3.08
605 606 3.903530 AAATGACCCCTCAGAAAACCT 57.096 42.857 0.00 0.00 0.00 3.50
606 607 4.955811 AAAAATGACCCCTCAGAAAACC 57.044 40.909 0.00 0.00 0.00 3.27
628 629 8.950007 ATTAAATGACCCCTCAGAGTTAAAAA 57.050 30.769 0.00 0.00 0.00 1.94
660 661 7.508977 TGTGGATCCCAGAAATAAAAGTTTTCT 59.491 33.333 9.90 0.00 42.63 2.52
679 680 4.096382 ACAAATGCGGTTTATCTGTGGATC 59.904 41.667 0.00 0.00 33.71 3.36
723 724 3.179795 CGTGTGTTGTCGTTCTGTTCTAG 59.820 47.826 0.00 0.00 0.00 2.43
730 731 0.874607 GGCTCGTGTGTTGTCGTTCT 60.875 55.000 0.00 0.00 0.00 3.01
755 756 4.717313 AGCGGCGGGGAAAGGTTC 62.717 66.667 9.78 0.00 0.00 3.62
888 889 4.397417 CGCCCAAGAAAGAAGATTTGAGAT 59.603 41.667 0.00 0.00 0.00 2.75
1276 1322 9.256477 TGTACTAACACAGAAACTAAATGTCAG 57.744 33.333 0.00 0.00 0.00 3.51
1298 1351 7.764443 TGCTACTTTCTCCACAATAAGATGTAC 59.236 37.037 0.00 0.00 30.84 2.90
1439 1534 8.537728 TGATAAGGATGCCATGTTTCTATTTT 57.462 30.769 0.00 0.00 0.00 1.82
1449 1544 5.995565 AAATGGATGATAAGGATGCCATG 57.004 39.130 0.00 0.00 36.34 3.66
1453 1548 6.444633 CAGTCAAAATGGATGATAAGGATGC 58.555 40.000 0.00 0.00 0.00 3.91
1467 1562 2.449464 TCCATGAGGCCAGTCAAAATG 58.551 47.619 5.01 0.00 33.74 2.32
1468 1563 2.905415 TCCATGAGGCCAGTCAAAAT 57.095 45.000 5.01 0.00 33.74 1.82
1470 1565 1.355381 ACATCCATGAGGCCAGTCAAA 59.645 47.619 5.01 0.00 33.74 2.69
1472 1567 0.543277 GACATCCATGAGGCCAGTCA 59.457 55.000 5.01 0.00 33.04 3.41
1473 1568 0.531532 CGACATCCATGAGGCCAGTC 60.532 60.000 5.01 0.00 33.74 3.51
1478 1611 0.107456 ATGTCCGACATCCATGAGGC 59.893 55.000 8.28 0.00 32.38 4.70
1520 1653 4.574674 TGAACATGATAAGGAGCCAGTT 57.425 40.909 0.00 0.00 0.00 3.16
1609 1825 5.674525 CAGGAGTCACACACACCATATATT 58.325 41.667 0.00 0.00 38.20 1.28
1615 1831 1.146041 GCAGGAGTCACACACACCA 59.854 57.895 0.00 0.00 38.20 4.17
1616 1832 1.598130 GGCAGGAGTCACACACACC 60.598 63.158 0.00 0.00 36.01 4.16
1618 1834 3.640761 TGGCAGGAGTCACACACA 58.359 55.556 0.00 0.00 0.00 3.72
1664 1888 3.524648 GACGAAAGGCACCGGGTGA 62.525 63.158 30.65 0.00 40.66 4.02
1743 1967 6.472163 GCCAAATAATTCTAATGGTGTTCACG 59.528 38.462 0.00 0.00 33.63 4.35
1779 2003 6.039493 TCCTCTCTCCTAAATTTAGTAGCACG 59.961 42.308 20.99 7.35 0.00 5.34
1908 2132 0.680921 AAATGTGGTGGGATGGCGAG 60.681 55.000 0.00 0.00 0.00 5.03
1943 2167 8.993121 CGAATTAAGCATATGAAACCTACAGAT 58.007 33.333 6.97 0.00 0.00 2.90
1950 2174 7.472543 AGTTGTCGAATTAAGCATATGAAACC 58.527 34.615 6.97 0.00 0.00 3.27
1955 2183 9.507280 AATCAAAGTTGTCGAATTAAGCATATG 57.493 29.630 0.00 0.00 0.00 1.78
2093 2321 2.993899 CGTTTGACAAGCTAGTACCCTG 59.006 50.000 0.37 0.00 0.00 4.45
2296 2524 3.788434 ACAACGATACGTGCTTCAAAG 57.212 42.857 0.00 0.00 39.99 2.77
2305 2533 6.424509 TGGTTTAGAATCAAACAACGATACGT 59.575 34.615 0.00 0.00 39.65 3.57
2312 2540 8.106247 TCCACTATGGTTTAGAATCAAACAAC 57.894 34.615 9.33 0.00 39.65 3.32
2314 2542 8.106462 TCATCCACTATGGTTTAGAATCAAACA 58.894 33.333 9.33 0.00 39.65 2.83
2315 2543 8.506168 TCATCCACTATGGTTTAGAATCAAAC 57.494 34.615 0.00 0.00 39.03 2.93
2339 2567 7.736447 ATTGATACGATTCCCAGAATTCTTC 57.264 36.000 4.86 0.00 0.00 2.87
2436 2674 7.584122 TCTTTACCTACCTGATATGAGTGAC 57.416 40.000 0.00 0.00 0.00 3.67
2610 2848 6.018425 ACAGCGTCATTAATCTATTTCAGCAG 60.018 38.462 0.00 0.00 0.00 4.24
2735 2973 3.633986 GCTCTCCTTCCCATTTTGGTATG 59.366 47.826 0.00 0.00 35.17 2.39
2795 3033 5.221048 CCACTAGGTTTGAAGTGAAAGGTTG 60.221 44.000 4.11 0.00 44.79 3.77
3016 3254 1.677576 CTCAACAGCAAGAACAGGCAA 59.322 47.619 0.00 0.00 0.00 4.52
3148 3386 4.626042 CGGTCAATTTCACCAAAAATGGA 58.374 39.130 1.10 0.00 32.89 3.41
3170 3408 5.157067 GGAAATGAGTTTTGAGCTTAGTGC 58.843 41.667 0.00 0.00 43.29 4.40
3263 3502 9.465199 TGAATTCCAGATCATCAACAAGATAAA 57.535 29.630 2.27 0.00 34.43 1.40
3434 3673 5.902613 TGCACTTAATCAAATCCTTGAGG 57.097 39.130 0.00 0.00 44.68 3.86
3469 3709 4.871993 AGAAGATTAAAGCTGATGTGCG 57.128 40.909 0.00 0.00 38.13 5.34
3506 3746 6.040391 GGAGTAGCATTTTGCCATGGTTAATA 59.960 38.462 14.67 5.15 46.52 0.98
3542 3782 4.035909 AGTTCAAAACCGCGACACTTATTT 59.964 37.500 8.23 0.00 0.00 1.40
3547 3827 2.228138 TAGTTCAAAACCGCGACACT 57.772 45.000 8.23 0.77 0.00 3.55
3548 3828 2.349155 CCTTAGTTCAAAACCGCGACAC 60.349 50.000 8.23 0.00 0.00 3.67
3549 3829 1.868498 CCTTAGTTCAAAACCGCGACA 59.132 47.619 8.23 0.00 0.00 4.35
3550 3830 1.869132 ACCTTAGTTCAAAACCGCGAC 59.131 47.619 8.23 0.00 0.00 5.19
3551 3831 2.243602 ACCTTAGTTCAAAACCGCGA 57.756 45.000 8.23 0.00 0.00 5.87
3552 3832 3.495753 ACTAACCTTAGTTCAAAACCGCG 59.504 43.478 0.00 0.00 40.96 6.46
3563 3843 6.261381 TGTCGCAATTTTGAACTAACCTTAGT 59.739 34.615 0.00 0.00 45.43 2.24
3564 3844 6.577427 GTGTCGCAATTTTGAACTAACCTTAG 59.423 38.462 0.00 0.00 36.82 2.18
3565 3845 6.261381 AGTGTCGCAATTTTGAACTAACCTTA 59.739 34.615 0.00 0.00 0.00 2.69
3566 3846 5.067283 AGTGTCGCAATTTTGAACTAACCTT 59.933 36.000 0.00 0.00 0.00 3.50
3567 3847 4.578928 AGTGTCGCAATTTTGAACTAACCT 59.421 37.500 0.00 0.00 0.00 3.50
3568 3848 4.855531 AGTGTCGCAATTTTGAACTAACC 58.144 39.130 0.00 0.00 0.00 2.85
3569 3849 8.502161 AATAAGTGTCGCAATTTTGAACTAAC 57.498 30.769 0.00 0.00 0.00 2.34
3570 3850 9.522804 AAAATAAGTGTCGCAATTTTGAACTAA 57.477 25.926 8.04 0.00 31.99 2.24
3571 3851 8.963130 CAAAATAAGTGTCGCAATTTTGAACTA 58.037 29.630 21.05 0.00 45.56 2.24
3572 3852 7.042791 CCAAAATAAGTGTCGCAATTTTGAACT 60.043 33.333 24.31 1.55 45.56 3.01
3573 3853 7.043059 TCCAAAATAAGTGTCGCAATTTTGAAC 60.043 33.333 24.31 0.00 45.56 3.18
3574 3854 6.980978 TCCAAAATAAGTGTCGCAATTTTGAA 59.019 30.769 24.31 12.09 45.56 2.69
3575 3855 6.507900 TCCAAAATAAGTGTCGCAATTTTGA 58.492 32.000 24.31 14.78 45.56 2.69
3576 3856 6.761731 TCCAAAATAAGTGTCGCAATTTTG 57.238 33.333 19.81 19.81 43.77 2.44
3577 3857 6.307800 CGATCCAAAATAAGTGTCGCAATTTT 59.692 34.615 0.00 4.50 33.07 1.82
3578 3858 5.799936 CGATCCAAAATAAGTGTCGCAATTT 59.200 36.000 0.00 0.00 0.00 1.82
3579 3859 5.331902 CGATCCAAAATAAGTGTCGCAATT 58.668 37.500 0.00 0.00 0.00 2.32
3580 3860 4.201910 CCGATCCAAAATAAGTGTCGCAAT 60.202 41.667 0.00 0.00 0.00 3.56
3581 3861 3.126171 CCGATCCAAAATAAGTGTCGCAA 59.874 43.478 0.00 0.00 0.00 4.85
3582 3862 2.675844 CCGATCCAAAATAAGTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
3583 3863 2.933906 TCCGATCCAAAATAAGTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
3584 3864 3.555956 CCTCCGATCCAAAATAAGTGTCG 59.444 47.826 0.00 0.00 0.00 4.35
3585 3865 3.877508 CCCTCCGATCCAAAATAAGTGTC 59.122 47.826 0.00 0.00 0.00 3.67
3586 3866 3.521937 TCCCTCCGATCCAAAATAAGTGT 59.478 43.478 0.00 0.00 0.00 3.55
3698 3978 3.769844 ACTATCTTCAGATCGGGTGTGTT 59.230 43.478 0.00 0.00 36.05 3.32
3756 4036 2.364632 TGCACGCAGCCTTATTATGTT 58.635 42.857 0.00 0.00 44.83 2.71
3759 4039 2.549754 GTGATGCACGCAGCCTTATTAT 59.450 45.455 4.63 0.00 44.83 1.28
3761 4041 0.734889 GTGATGCACGCAGCCTTATT 59.265 50.000 4.63 0.00 44.83 1.40
3762 4042 0.107508 AGTGATGCACGCAGCCTTAT 60.108 50.000 4.63 0.00 44.83 1.73
3868 4216 3.458189 CATTTTCCGCGTCTCTAAGGAT 58.542 45.455 4.92 0.00 32.19 3.24
3890 4238 3.434641 ACAATGTCGCAGATCTCAACAAG 59.565 43.478 0.00 0.00 40.67 3.16
3914 4262 4.351054 CCGGGCTGCCCTTCTTGT 62.351 66.667 33.39 0.00 42.67 3.16
3970 4318 2.835431 ACCGAGCCATCTCTCCCG 60.835 66.667 0.00 0.00 37.19 5.14
4074 4422 0.689080 CTCCTCCCCTAGCAGCTCAA 60.689 60.000 0.00 0.00 0.00 3.02
4236 4585 1.444836 TGCCGTTTATCTTTCACCCG 58.555 50.000 0.00 0.00 0.00 5.28
4256 4605 6.655078 AAACTGTACATGCTGGAGATTTTT 57.345 33.333 0.00 0.00 0.00 1.94
4257 4606 6.151144 GGTAAACTGTACATGCTGGAGATTTT 59.849 38.462 0.00 0.00 0.00 1.82
4260 4610 4.471386 AGGTAAACTGTACATGCTGGAGAT 59.529 41.667 0.00 0.00 0.00 2.75
4283 4640 0.533531 CCTCTCACAGTTGCAGCACA 60.534 55.000 2.55 0.00 0.00 4.57
4290 4647 3.265791 GGCAATAGACCTCTCACAGTTG 58.734 50.000 0.00 0.00 0.00 3.16
4297 4654 4.054671 CTCATTTCGGCAATAGACCTCTC 58.945 47.826 0.00 0.00 0.00 3.20
4310 4667 2.366916 ACCTCATCTAGCCTCATTTCGG 59.633 50.000 0.00 0.00 0.00 4.30
4316 4673 1.289231 AGGTGACCTCATCTAGCCTCA 59.711 52.381 0.00 0.00 35.13 3.86
4363 4722 3.979948 AGTCGCAGATTCATGAGATCTG 58.020 45.455 26.74 26.74 43.32 2.90
4366 4725 3.894427 AGGTAGTCGCAGATTCATGAGAT 59.106 43.478 0.00 0.00 40.67 2.75
4381 4740 6.862711 AGCTTGTTACTCAAAAAGGTAGTC 57.137 37.500 0.00 0.00 35.48 2.59
4386 4745 9.581099 TTAAAAGAAGCTTGTTACTCAAAAAGG 57.419 29.630 9.55 0.00 35.48 3.11
4419 4779 3.594603 ACATAGGACGGAAAGACAGTG 57.405 47.619 0.00 0.00 0.00 3.66
4458 4818 9.927668 CTTCCAATGTTCACAAATTAATAACCT 57.072 29.630 0.00 0.00 0.00 3.50
4459 4819 9.705290 ACTTCCAATGTTCACAAATTAATAACC 57.295 29.630 0.00 0.00 0.00 2.85
4491 4958 5.824624 ACATGGTATGTCAGTTTGATGATCC 59.175 40.000 0.00 0.00 39.92 3.36
4493 4960 7.568349 AGTACATGGTATGTCAGTTTGATGAT 58.432 34.615 0.00 0.00 43.67 2.45
4511 4981 6.863126 CAGAACTTTTGGCCTTTTAGTACATG 59.137 38.462 3.32 0.00 0.00 3.21
4534 5004 4.629200 GCTGTCCTCTTCTTTATCACACAG 59.371 45.833 0.00 0.00 33.38 3.66
4537 5007 3.509967 TCGCTGTCCTCTTCTTTATCACA 59.490 43.478 0.00 0.00 0.00 3.58
4566 5036 2.287248 GCACTTGTCTCAAACTTGCCTC 60.287 50.000 0.00 0.00 0.00 4.70
4569 5039 2.542411 CCAGCACTTGTCTCAAACTTGC 60.542 50.000 0.00 0.00 32.32 4.01
4651 5121 5.926214 TTGTACGTGCTAAATTTAGTGCA 57.074 34.783 22.94 15.47 33.32 4.57
4695 5165 1.719780 GTGCGTCGTTTTCAGAGGTAG 59.280 52.381 0.00 0.00 0.00 3.18
4704 5174 0.809241 TACAACCCGTGCGTCGTTTT 60.809 50.000 0.00 0.00 37.94 2.43
4707 5177 1.662446 CTTACAACCCGTGCGTCGT 60.662 57.895 0.00 0.00 37.94 4.34
4713 5183 2.203401 TCGTTTGACTTACAACCCGTG 58.797 47.619 0.00 0.00 38.29 4.94
4715 5185 2.414138 GGATCGTTTGACTTACAACCCG 59.586 50.000 0.00 0.00 38.29 5.28
4716 5186 3.404899 TGGATCGTTTGACTTACAACCC 58.595 45.455 0.00 0.00 38.29 4.11
4747 5351 5.710513 TTGAATTGGGTCATGAACAAGAG 57.289 39.130 13.90 0.00 0.00 2.85
4748 5352 5.047164 CCATTGAATTGGGTCATGAACAAGA 60.047 40.000 13.90 0.00 32.80 3.02
4749 5353 5.172934 CCATTGAATTGGGTCATGAACAAG 58.827 41.667 13.90 1.86 32.80 3.16
4750 5354 4.592351 ACCATTGAATTGGGTCATGAACAA 59.408 37.500 13.90 14.14 41.35 2.83
4751 5355 4.158786 ACCATTGAATTGGGTCATGAACA 58.841 39.130 13.90 5.11 41.35 3.18
4752 5356 4.806640 ACCATTGAATTGGGTCATGAAC 57.193 40.909 0.73 0.73 41.35 3.18
4759 5363 3.713826 ACGAGTACCATTGAATTGGGT 57.286 42.857 0.00 0.00 41.35 4.51
4769 5373 9.321562 CATACCTTTTGTAATTACGAGTACCAT 57.678 33.333 10.92 0.00 31.94 3.55
4772 5376 8.811378 GTCCATACCTTTTGTAATTACGAGTAC 58.189 37.037 10.92 0.00 31.94 2.73
4777 5381 8.179615 GGAAAGTCCATACCTTTTGTAATTACG 58.820 37.037 10.92 0.00 36.28 3.18
4796 5400 2.092323 GGGTAGTGGCAATGGAAAGTC 58.908 52.381 0.00 0.00 0.00 3.01
4797 5401 1.427368 TGGGTAGTGGCAATGGAAAGT 59.573 47.619 0.00 0.00 0.00 2.66
4802 5406 1.271871 TGACTTGGGTAGTGGCAATGG 60.272 52.381 0.00 0.00 37.17 3.16
4804 5408 1.705186 AGTGACTTGGGTAGTGGCAAT 59.295 47.619 0.00 0.00 37.17 3.56
4805 5409 1.136828 AGTGACTTGGGTAGTGGCAA 58.863 50.000 0.00 0.00 37.17 4.52
4806 5410 0.396435 CAGTGACTTGGGTAGTGGCA 59.604 55.000 0.00 0.00 37.17 4.92
4807 5411 0.955919 GCAGTGACTTGGGTAGTGGC 60.956 60.000 0.00 0.00 37.17 5.01
4844 5849 9.994432 GGAGAAAGAACACAATAATCATGTAAG 57.006 33.333 0.00 0.00 0.00 2.34
4845 5850 9.513906 TGGAGAAAGAACACAATAATCATGTAA 57.486 29.630 0.00 0.00 0.00 2.41
4847 5852 7.884877 TCTGGAGAAAGAACACAATAATCATGT 59.115 33.333 0.00 0.00 0.00 3.21
4850 5855 7.679783 TCTCTGGAGAAAGAACACAATAATCA 58.320 34.615 0.00 0.00 33.91 2.57
4851 5856 8.037758 TCTCTCTGGAGAAAGAACACAATAATC 58.962 37.037 1.86 0.00 44.62 1.75
4853 5858 7.303182 TCTCTCTGGAGAAAGAACACAATAA 57.697 36.000 1.86 0.00 44.62 1.40
4854 5859 6.918067 TCTCTCTGGAGAAAGAACACAATA 57.082 37.500 1.86 0.00 44.62 1.90
4866 5871 4.604156 TGCTGTATTCTTCTCTCTGGAGA 58.396 43.478 0.20 0.20 45.75 3.71
4867 5872 4.402155 ACTGCTGTATTCTTCTCTCTGGAG 59.598 45.833 0.00 0.00 40.73 3.86
4870 5875 4.431809 CCACTGCTGTATTCTTCTCTCTG 58.568 47.826 0.00 0.00 0.00 3.35
4871 5876 3.118811 GCCACTGCTGTATTCTTCTCTCT 60.119 47.826 0.00 0.00 33.53 3.10
4872 5877 3.194062 GCCACTGCTGTATTCTTCTCTC 58.806 50.000 0.00 0.00 33.53 3.20
4873 5878 2.417924 CGCCACTGCTGTATTCTTCTCT 60.418 50.000 0.00 0.00 34.43 3.10
4874 5879 1.929836 CGCCACTGCTGTATTCTTCTC 59.070 52.381 0.00 0.00 34.43 2.87
4875 5880 2.009042 GCGCCACTGCTGTATTCTTCT 61.009 52.381 0.00 0.00 34.43 2.85
4876 5881 0.375106 GCGCCACTGCTGTATTCTTC 59.625 55.000 0.00 0.00 34.43 2.87
4879 5884 4.208632 AGCGCCACTGCTGTATTC 57.791 55.556 2.29 0.00 45.28 1.75
4917 6138 9.230122 TGCAATGTCAGTATCTGAATCTAAAAA 57.770 29.630 0.88 0.00 42.46 1.94
4922 6143 4.815308 GCTGCAATGTCAGTATCTGAATCT 59.185 41.667 0.88 0.00 42.46 2.40
4929 6150 2.357009 CCCTTGCTGCAATGTCAGTATC 59.643 50.000 16.38 0.00 36.49 2.24
4939 6160 0.538057 CTCTGGTTCCCTTGCTGCAA 60.538 55.000 15.16 15.16 0.00 4.08
4948 6169 2.359975 CAACGGGCTCTGGTTCCC 60.360 66.667 0.00 0.00 39.17 3.97
4963 6186 1.678728 CCGCTCATAGAAAGGCCACAA 60.679 52.381 5.01 0.00 0.00 3.33
4971 6194 6.037786 TCTCTTTCTTTCCGCTCATAGAAA 57.962 37.500 0.00 0.00 35.83 2.52
4973 6196 5.655488 CTTCTCTTTCTTTCCGCTCATAGA 58.345 41.667 0.00 0.00 0.00 1.98
4974 6197 4.269844 GCTTCTCTTTCTTTCCGCTCATAG 59.730 45.833 0.00 0.00 0.00 2.23
4982 6205 3.222603 TGGGTTGCTTCTCTTTCTTTCC 58.777 45.455 0.00 0.00 0.00 3.13
4997 6220 0.327924 TGGGTGTGCTATCTGGGTTG 59.672 55.000 0.00 0.00 0.00 3.77
5001 6224 4.717877 TGAAATATGGGTGTGCTATCTGG 58.282 43.478 0.00 0.00 0.00 3.86
5002 6225 6.713903 AGAATGAAATATGGGTGTGCTATCTG 59.286 38.462 0.00 0.00 0.00 2.90
5003 6226 6.713903 CAGAATGAAATATGGGTGTGCTATCT 59.286 38.462 0.00 0.00 39.69 1.98
5004 6227 6.488006 ACAGAATGAAATATGGGTGTGCTATC 59.512 38.462 0.00 0.00 39.69 2.08
5006 6229 5.754782 ACAGAATGAAATATGGGTGTGCTA 58.245 37.500 0.00 0.00 39.69 3.49
5008 6231 4.989279 ACAGAATGAAATATGGGTGTGC 57.011 40.909 0.00 0.00 39.69 4.57
5009 6232 6.263842 AGCATACAGAATGAAATATGGGTGTG 59.736 38.462 0.00 0.00 39.69 3.82
5012 6245 7.201938 CCAAAGCATACAGAATGAAATATGGGT 60.202 37.037 0.00 0.00 39.69 4.51
5074 6308 1.153647 CAATACTCCGCTCGTGCCA 60.154 57.895 3.52 0.00 35.36 4.92
5075 6309 0.459585 TTCAATACTCCGCTCGTGCC 60.460 55.000 3.52 0.00 35.36 5.01
5079 6313 3.181774 CCGTATTTTCAATACTCCGCTCG 59.818 47.826 5.36 0.00 0.00 5.03
5080 6314 4.365723 TCCGTATTTTCAATACTCCGCTC 58.634 43.478 5.36 0.00 0.00 5.03
5082 6316 5.163834 TGTTTCCGTATTTTCAATACTCCGC 60.164 40.000 5.36 0.00 0.00 5.54
5083 6317 6.411630 TGTTTCCGTATTTTCAATACTCCG 57.588 37.500 5.36 0.00 0.00 4.63
5084 6318 7.638683 CGAATGTTTCCGTATTTTCAATACTCC 59.361 37.037 5.36 0.00 0.00 3.85
5085 6319 7.163682 GCGAATGTTTCCGTATTTTCAATACTC 59.836 37.037 5.36 0.00 0.00 2.59
5086 6320 6.964934 GCGAATGTTTCCGTATTTTCAATACT 59.035 34.615 5.36 0.00 0.00 2.12
5087 6321 6.076298 CGCGAATGTTTCCGTATTTTCAATAC 60.076 38.462 0.00 0.00 0.00 1.89
5106 6340 5.637387 AGAAAACAAATAATTTGGCGCGAAT 59.363 32.000 12.10 3.58 44.81 3.34
5120 6354 3.446873 TGTGTCCTGTGCAGAAAACAAAT 59.553 39.130 0.02 0.00 0.00 2.32
5150 6384 7.054751 GGGTGTAAAAGATAGGACAAGCTTAT 58.945 38.462 0.00 0.00 0.00 1.73
5153 6387 4.536489 AGGGTGTAAAAGATAGGACAAGCT 59.464 41.667 0.00 0.00 0.00 3.74
5154 6388 4.844884 AGGGTGTAAAAGATAGGACAAGC 58.155 43.478 0.00 0.00 0.00 4.01
5155 6389 5.109903 CGAGGGTGTAAAAGATAGGACAAG 58.890 45.833 0.00 0.00 0.00 3.16
5156 6390 4.081309 CCGAGGGTGTAAAAGATAGGACAA 60.081 45.833 0.00 0.00 0.00 3.18
5157 6391 3.449737 CCGAGGGTGTAAAAGATAGGACA 59.550 47.826 0.00 0.00 0.00 4.02
5158 6392 3.450096 ACCGAGGGTGTAAAAGATAGGAC 59.550 47.826 0.00 0.00 32.98 3.85
5159 6393 3.716431 ACCGAGGGTGTAAAAGATAGGA 58.284 45.455 0.00 0.00 32.98 2.94
5160 6394 5.303589 TGATACCGAGGGTGTAAAAGATAGG 59.696 44.000 0.00 0.00 36.19 2.57
5161 6395 6.401047 TGATACCGAGGGTGTAAAAGATAG 57.599 41.667 0.00 0.00 36.19 2.08
5162 6396 5.221382 GCTGATACCGAGGGTGTAAAAGATA 60.221 44.000 0.00 0.00 36.19 1.98
5163 6397 4.443034 GCTGATACCGAGGGTGTAAAAGAT 60.443 45.833 0.00 0.00 36.19 2.40
5164 6398 3.118884 GCTGATACCGAGGGTGTAAAAGA 60.119 47.826 0.00 0.00 36.19 2.52
5165 6399 3.195661 GCTGATACCGAGGGTGTAAAAG 58.804 50.000 0.00 0.00 36.19 2.27
5166 6400 2.568062 TGCTGATACCGAGGGTGTAAAA 59.432 45.455 0.00 0.00 36.19 1.52
5167 6401 2.167693 CTGCTGATACCGAGGGTGTAAA 59.832 50.000 0.00 0.00 36.19 2.01
5168 6402 1.754803 CTGCTGATACCGAGGGTGTAA 59.245 52.381 0.00 0.00 36.19 2.41
5169 6403 1.399714 CTGCTGATACCGAGGGTGTA 58.600 55.000 0.00 0.00 36.19 2.90
5170 6404 1.961180 GCTGCTGATACCGAGGGTGT 61.961 60.000 0.00 0.00 36.19 4.16
5171 6405 1.227380 GCTGCTGATACCGAGGGTG 60.227 63.158 0.00 0.00 36.19 4.61
5172 6406 1.680522 CTGCTGCTGATACCGAGGGT 61.681 60.000 0.00 0.00 40.16 4.34
5173 6407 1.068753 CTGCTGCTGATACCGAGGG 59.931 63.158 0.00 0.00 0.00 4.30
5174 6408 1.819229 ACTGCTGCTGATACCGAGG 59.181 57.895 13.69 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.