Multiple sequence alignment - TraesCS3D01G109500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G109500 chr3D 100.000 6711 0 0 1 6711 63353161 63359871 0.000000e+00 12393
1 TraesCS3D01G109500 chr3D 88.938 226 23 2 6059 6284 556024181 556023958 1.840000e-70 278
2 TraesCS3D01G109500 chr3D 83.333 288 46 2 6297 6582 398398941 398398654 1.440000e-66 265
3 TraesCS3D01G109500 chr3B 95.417 3993 129 22 807 4778 102751886 102755845 0.000000e+00 6311
4 TraesCS3D01G109500 chr3B 91.122 1194 50 29 4771 5931 102756527 102757697 0.000000e+00 1567
5 TraesCS3D01G109500 chr3B 92.668 791 33 13 1 778 102744872 102745650 0.000000e+00 1116
6 TraesCS3D01G109500 chr3B 87.264 212 25 1 6082 6293 828757303 828757094 2.420000e-59 241
7 TraesCS3D01G109500 chr3A 94.388 3225 123 27 837 4032 72412802 72415997 0.000000e+00 4900
8 TraesCS3D01G109500 chr3A 94.177 1975 87 19 4106 6072 72416054 72418008 0.000000e+00 2985
9 TraesCS3D01G109500 chr3A 90.278 216 21 0 6071 6286 134257684 134257469 3.960000e-72 283
10 TraesCS3D01G109500 chr3A 83.067 313 12 16 511 822 72412540 72412812 5.200000e-61 246
11 TraesCS3D01G109500 chr3A 83.077 195 32 1 6092 6286 750249330 750249523 6.920000e-40 176
12 TraesCS3D01G109500 chrUn 100.000 402 0 0 2346 2747 478567559 478567960 0.000000e+00 743
13 TraesCS3D01G109500 chrUn 89.401 217 23 0 6068 6284 51420752 51420536 2.380000e-69 274
14 TraesCS3D01G109500 chr5D 85.032 628 82 8 2959 3575 493938633 493939259 4.420000e-176 628
15 TraesCS3D01G109500 chr5D 88.514 296 33 1 6288 6582 10902990 10903285 2.300000e-94 357
16 TraesCS3D01G109500 chr5D 88.496 226 23 2 6062 6284 536239511 536239736 3.080000e-68 270
17 TraesCS3D01G109500 chr5D 86.765 204 27 0 6081 6284 363884983 363885186 1.880000e-55 228
18 TraesCS3D01G109500 chr7D 87.162 296 37 1 6288 6582 628134810 628135105 1.080000e-87 335
19 TraesCS3D01G109500 chr7D 89.189 222 22 2 6066 6286 628134490 628134710 6.630000e-70 276
20 TraesCS3D01G109500 chr7D 88.444 225 24 2 6062 6286 515487238 515487016 3.080000e-68 270
21 TraesCS3D01G109500 chr1D 84.592 331 36 13 3676 3995 468053764 468054090 1.400000e-81 315
22 TraesCS3D01G109500 chr1A 85.570 298 35 7 3694 3986 561092774 561093068 8.460000e-79 305
23 TraesCS3D01G109500 chr4B 85.135 296 43 1 6288 6582 624725022 624724727 1.090000e-77 302
24 TraesCS3D01G109500 chr4B 84.266 286 44 1 6298 6582 16800101 16799816 1.840000e-70 278
25 TraesCS3D01G109500 chr2D 84.797 296 44 1 6288 6582 19634444 19634739 5.090000e-76 296
26 TraesCS3D01G109500 chr2D 84.797 296 43 2 6288 6582 87830188 87829894 5.090000e-76 296
27 TraesCS3D01G109500 chr7B 89.520 229 21 3 6060 6286 104298319 104298546 3.060000e-73 287
28 TraesCS3D01G109500 chr6D 84.698 281 42 1 6288 6567 253754085 253754365 5.120000e-71 279
29 TraesCS3D01G109500 chr2A 89.140 221 24 0 6064 6284 66767190 66767410 6.630000e-70 276
30 TraesCS3D01G109500 chr2A 88.210 229 24 3 6058 6284 729830938 729831165 3.080000e-68 270
31 TraesCS3D01G109500 chr4A 83.916 286 42 3 6297 6580 7610198 7609915 3.080000e-68 270
32 TraesCS3D01G109500 chr7A 83.108 296 49 1 6288 6582 81145808 81145513 1.110000e-67 268
33 TraesCS3D01G109500 chr7A 86.611 239 28 2 3750 3985 437228153 437227916 1.860000e-65 261
34 TraesCS3D01G109500 chr5A 86.307 241 29 2 3744 3981 590448553 590448792 6.680000e-65 259
35 TraesCS3D01G109500 chr5B 86.161 224 24 6 6068 6291 655116827 655116611 1.130000e-57 235
36 TraesCS3D01G109500 chr5B 81.761 159 27 2 6133 6291 615398074 615397918 1.520000e-26 132
37 TraesCS3D01G109500 chr6B 86.047 215 28 2 6070 6284 287155280 287155492 5.230000e-56 230
38 TraesCS3D01G109500 chr1B 85.784 204 29 0 6081 6284 661986947 661987150 4.080000e-52 217
39 TraesCS3D01G109500 chr1B 83.108 148 25 0 6139 6286 423715226 423715373 1.170000e-27 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G109500 chr3D 63353161 63359871 6710 False 12393.000000 12393 100.0000 1 6711 1 chr3D.!!$F1 6710
1 TraesCS3D01G109500 chr3B 102751886 102757697 5811 False 3939.000000 6311 93.2695 807 5931 2 chr3B.!!$F2 5124
2 TraesCS3D01G109500 chr3B 102744872 102745650 778 False 1116.000000 1116 92.6680 1 778 1 chr3B.!!$F1 777
3 TraesCS3D01G109500 chr3A 72412540 72418008 5468 False 2710.333333 4900 90.5440 511 6072 3 chr3A.!!$F2 5561
4 TraesCS3D01G109500 chr5D 493938633 493939259 626 False 628.000000 628 85.0320 2959 3575 1 chr5D.!!$F3 616
5 TraesCS3D01G109500 chr7D 628134490 628135105 615 False 305.500000 335 88.1755 6066 6582 2 chr7D.!!$F1 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 129 0.255890 ACCAAGCACCTTCACACACT 59.744 50.000 0.0 0.0 0.00 3.55 F
1413 1451 0.041839 GCGCTGCAAGTATGAATCGG 60.042 55.000 0.0 0.0 35.30 4.18 F
1543 1584 0.179100 AATGGTCATCTCTGCGGTCG 60.179 55.000 0.0 0.0 0.00 4.79 F
2271 2318 0.761187 TAGCTGATCATGTGGAGCCC 59.239 55.000 0.0 0.0 31.43 5.19 F
3745 3803 1.070601 GGCAACCAATTCAGGCTTGTT 59.929 47.619 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1538 1579 0.030101 AACCAACATGCAAACGACCG 59.970 50.000 0.0 0.00 0.00 4.79 R
2251 2298 1.141657 GGGCTCCACATGATCAGCTAA 59.858 52.381 0.0 0.00 32.14 3.09 R
3003 3050 5.008415 CCCACACGACTATAGTACTAACAGG 59.992 48.000 6.7 2.75 0.00 4.00 R
3860 3918 4.636249 GAGGGGATCTGCACAAAGTATAG 58.364 47.826 0.0 0.00 0.00 1.31 R
5729 6529 0.328258 AAGATCCCAAAGTGGTCCGG 59.672 55.000 0.0 0.00 35.17 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.787249 CGCAAGCCCGTCTGATTG 59.213 61.111 0.00 0.00 0.00 2.67
26 27 2.034879 CGCAAGCCCGTCTGATTGT 61.035 57.895 0.00 0.00 0.00 2.71
95 96 0.385751 ATACGATCGGCACCACTGAG 59.614 55.000 20.98 0.00 37.00 3.35
96 97 0.963856 TACGATCGGCACCACTGAGT 60.964 55.000 20.98 0.00 37.00 3.41
125 129 0.255890 ACCAAGCACCTTCACACACT 59.744 50.000 0.00 0.00 0.00 3.55
132 136 2.494059 CACCTTCACACACTAACCCTG 58.506 52.381 0.00 0.00 0.00 4.45
134 138 1.202758 CCTTCACACACTAACCCTGCA 60.203 52.381 0.00 0.00 0.00 4.41
157 165 6.146216 CACACGCCAAACACATTTTAGATAA 58.854 36.000 0.00 0.00 0.00 1.75
179 187 1.968540 GCTGTCTGTGCCAACCCTC 60.969 63.158 0.00 0.00 0.00 4.30
235 243 3.441572 AGCCCAACAAATTCAGAGAATCG 59.558 43.478 0.00 0.00 42.67 3.34
236 244 3.428045 GCCCAACAAATTCAGAGAATCGG 60.428 47.826 0.00 0.00 42.67 4.18
242 250 3.477210 AATTCAGAGAATCGGGTAGCC 57.523 47.619 0.00 0.00 42.67 3.93
259 267 1.168714 GCCAAACCTGCTACTCCTTG 58.831 55.000 0.00 0.00 0.00 3.61
293 301 1.808945 CACTTCATCAAGCAGGTGGAC 59.191 52.381 0.00 0.00 32.09 4.02
296 304 0.904649 TCATCAAGCAGGTGGACGAT 59.095 50.000 0.00 0.00 0.00 3.73
330 338 3.242969 GGATACACTAGTCACGCGATGAA 60.243 47.826 15.93 0.00 39.72 2.57
337 345 0.572590 GTCACGCGATGAAATCTCCG 59.427 55.000 15.93 0.00 42.58 4.63
394 402 1.510623 GCAGTTTGCAGATGCGACG 60.511 57.895 0.00 0.00 44.26 5.12
398 410 0.447801 GTTTGCAGATGCGACGGAAT 59.552 50.000 0.00 0.00 45.83 3.01
410 422 1.927174 CGACGGAATCAGCAAGGTAAG 59.073 52.381 0.00 0.00 0.00 2.34
432 444 5.167845 AGAAACGCAACAAGTCAAAAACAT 58.832 33.333 0.00 0.00 0.00 2.71
444 456 7.176515 ACAAGTCAAAAACATGCATATACCAGA 59.823 33.333 0.00 0.00 29.53 3.86
450 462 4.999469 ACATGCATATACCAGAATCCCA 57.001 40.909 0.00 0.00 0.00 4.37
462 474 3.134804 CCAGAATCCCAAGGATACGAAGT 59.865 47.826 0.00 0.00 42.27 3.01
584 596 1.154205 CCTACTCTTCCAATGGCGCG 61.154 60.000 0.00 0.00 0.00 6.86
588 600 1.996786 CTCTTCCAATGGCGCGCAAT 61.997 55.000 34.42 26.49 0.00 3.56
593 605 2.100216 AATGGCGCGCAATCGAAC 59.900 55.556 34.42 14.17 38.10 3.95
615 627 2.755542 AATCGCCTCGCCGAGCATAG 62.756 60.000 9.01 0.00 40.97 2.23
879 893 2.672996 GCCCAAAGCTTCGAGCCA 60.673 61.111 0.00 0.00 43.77 4.75
924 938 2.689983 GACATCTGGGCCCAAAATACTG 59.310 50.000 28.29 17.84 0.00 2.74
969 1007 3.007940 TCAATATCCACTGAATAGCCCGG 59.992 47.826 0.00 0.00 0.00 5.73
1039 1077 2.253758 GCAAGCGCAACCAGTCTCA 61.254 57.895 11.47 0.00 38.36 3.27
1258 1296 1.143073 TCGCTAGATCTAGTGGCTCCA 59.857 52.381 32.75 17.26 42.33 3.86
1406 1444 0.107017 ATTCTGGGCGCTGCAAGTAT 60.107 50.000 7.64 0.00 35.30 2.12
1413 1451 0.041839 GCGCTGCAAGTATGAATCGG 60.042 55.000 0.00 0.00 35.30 4.18
1455 1493 5.473162 TGGTATATCGAATTGGGAAAGCATG 59.527 40.000 0.00 0.00 0.00 4.06
1461 1499 4.222588 TCGAATTGGGAAAGCATGGATTTT 59.777 37.500 0.00 0.00 0.00 1.82
1462 1500 4.937015 CGAATTGGGAAAGCATGGATTTTT 59.063 37.500 0.00 0.00 0.00 1.94
1516 1557 5.289917 TGTTGCATAGGTTCGTGTAAATG 57.710 39.130 0.00 0.00 0.00 2.32
1526 1567 4.457949 GGTTCGTGTAAATGTCAGGGAAAT 59.542 41.667 0.00 0.00 0.00 2.17
1532 1573 5.418840 GTGTAAATGTCAGGGAAATGGTCAT 59.581 40.000 0.00 0.00 0.00 3.06
1533 1574 5.652014 TGTAAATGTCAGGGAAATGGTCATC 59.348 40.000 0.00 0.00 0.00 2.92
1534 1575 4.598036 AATGTCAGGGAAATGGTCATCT 57.402 40.909 0.00 0.00 0.00 2.90
1535 1576 3.634397 TGTCAGGGAAATGGTCATCTC 57.366 47.619 0.00 0.00 0.00 2.75
1536 1577 3.184628 TGTCAGGGAAATGGTCATCTCT 58.815 45.455 0.00 0.00 0.00 3.10
1537 1578 3.054875 TGTCAGGGAAATGGTCATCTCTG 60.055 47.826 0.00 0.00 44.01 3.35
1538 1579 2.092753 TCAGGGAAATGGTCATCTCTGC 60.093 50.000 0.00 0.00 42.67 4.26
1539 1580 1.134280 AGGGAAATGGTCATCTCTGCG 60.134 52.381 0.00 0.00 0.00 5.18
1540 1581 1.303309 GGAAATGGTCATCTCTGCGG 58.697 55.000 0.00 0.00 0.00 5.69
1543 1584 0.179100 AATGGTCATCTCTGCGGTCG 60.179 55.000 0.00 0.00 0.00 4.79
1554 1595 0.998226 CTGCGGTCGTTTGCATGTTG 60.998 55.000 0.00 0.00 40.89 3.33
1608 1655 4.532126 TCCGATATGGCTGAGTGGAATTAT 59.468 41.667 0.00 0.00 37.80 1.28
1614 1661 9.624373 GATATGGCTGAGTGGAATTATATGATT 57.376 33.333 0.00 0.00 0.00 2.57
1615 1662 7.934855 ATGGCTGAGTGGAATTATATGATTC 57.065 36.000 10.93 10.93 35.71 2.52
1616 1663 6.840527 TGGCTGAGTGGAATTATATGATTCA 58.159 36.000 18.76 5.70 37.69 2.57
1617 1664 7.464273 TGGCTGAGTGGAATTATATGATTCAT 58.536 34.615 18.76 4.28 37.69 2.57
1618 1665 7.392393 TGGCTGAGTGGAATTATATGATTCATG 59.608 37.037 18.76 6.03 37.69 3.07
1619 1666 7.148120 GGCTGAGTGGAATTATATGATTCATGG 60.148 40.741 18.76 6.55 37.69 3.66
1620 1667 7.609146 GCTGAGTGGAATTATATGATTCATGGA 59.391 37.037 18.76 0.00 37.69 3.41
1621 1668 8.853077 TGAGTGGAATTATATGATTCATGGAC 57.147 34.615 18.76 10.77 37.69 4.02
1653 1700 7.412237 GCCTTGATGATATTGCTTTGTTTTGTC 60.412 37.037 0.00 0.00 0.00 3.18
1658 1705 9.638239 GATGATATTGCTTTGTTTTGTCCTTTA 57.362 29.630 0.00 0.00 0.00 1.85
1706 1753 7.069578 GGATCCAGTACCATTCTAGTTCTTGTA 59.930 40.741 6.95 0.00 0.00 2.41
1709 1756 8.822805 TCCAGTACCATTCTAGTTCTTGTATTT 58.177 33.333 0.00 0.00 0.00 1.40
1781 1828 5.516090 TGATTCGGAACAACTTGTTAAAGC 58.484 37.500 7.15 6.26 41.28 3.51
1940 1987 4.689612 TTTAGCCTTAGGTAGAGCCATG 57.310 45.455 0.00 0.00 40.61 3.66
1960 2007 6.295859 GCCATGACCTTGGATGTAGATATACA 60.296 42.308 2.07 2.07 39.25 2.29
2008 2055 3.631145 TGAGACAGCTTGATTTGTTGC 57.369 42.857 0.00 0.00 0.00 4.17
2065 2112 5.742446 GCTTTAGCTGCACAGTCATAATAC 58.258 41.667 1.02 0.00 38.21 1.89
2077 2124 8.240682 GCACAGTCATAATACCAATTGTTTACA 58.759 33.333 4.43 0.00 0.00 2.41
2251 2298 3.582164 GGAGTCACTATTCCTCCTCCAT 58.418 50.000 0.00 0.00 41.31 3.41
2271 2318 0.761187 TAGCTGATCATGTGGAGCCC 59.239 55.000 0.00 0.00 31.43 5.19
2993 3040 8.571461 AAGAATTTCTTGCTGTGAGATTCATA 57.429 30.769 10.82 0.00 37.44 2.15
3003 3050 6.767902 TGCTGTGAGATTCATACCCTAAAATC 59.232 38.462 0.00 0.00 0.00 2.17
3271 3328 7.095857 GGCTTTATGATTTCTAGTCACTCATCG 60.096 40.741 0.00 0.00 0.00 3.84
3278 3335 5.491635 TTCTAGTCACTCATCGAGTCATG 57.508 43.478 0.00 0.00 41.37 3.07
3293 3350 9.201127 CATCGAGTCATGTATGTGATATCTTTT 57.799 33.333 3.98 0.00 0.00 2.27
3478 3535 5.460646 ACAGCATTCTGGTTTAATTCAACG 58.539 37.500 0.00 0.00 44.54 4.10
3669 3726 2.211806 GCTCTTGAGCTGGCTATTCTG 58.788 52.381 14.65 0.00 0.00 3.02
3733 3791 8.160106 ACTAAATTCCATTTTTATGGCAACCAA 58.840 29.630 0.00 0.00 41.43 3.67
3745 3803 1.070601 GGCAACCAATTCAGGCTTGTT 59.929 47.619 0.00 0.00 0.00 2.83
3860 3918 4.191544 TCATATTAGTGCCTGAACTGTGC 58.808 43.478 0.00 0.00 0.00 4.57
4135 4211 9.394767 ACTTAAATCATGCAACTCACATGTATA 57.605 29.630 0.00 0.00 44.26 1.47
4303 4379 1.066502 GCCAGAGAACTCACTTCCCTC 60.067 57.143 4.64 0.00 0.00 4.30
4335 4411 4.080751 TGGTCAAGGTACCTTAACTATGCC 60.081 45.833 26.66 17.71 40.44 4.40
4402 4478 9.860898 GCCTGAAACTTCATCTTATTTTATTGT 57.139 29.630 0.00 0.00 36.46 2.71
4486 4562 3.191669 TGGAATCAAAGGTATGCGTACG 58.808 45.455 11.84 11.84 0.00 3.67
4507 4584 6.768515 ACGCACGTGAAATTTTTATAATCG 57.231 33.333 22.23 10.24 0.00 3.34
4561 4638 3.755378 AGGCATCAACAACTGAAGACATC 59.245 43.478 0.00 0.00 37.67 3.06
4640 4717 4.461081 ACCTTAATATTTTTGCTCGTGCCA 59.539 37.500 7.05 0.00 38.71 4.92
4799 5565 7.823310 TCACAGTGCCATTTTAATTTATTGCAT 59.177 29.630 0.00 0.00 0.00 3.96
4994 5760 1.453155 ACCGTGCTAGCAGAAATTGG 58.547 50.000 20.03 14.94 0.00 3.16
5100 5866 2.017049 GCCGCCACAGTATTCTTGAAT 58.983 47.619 1.35 1.35 0.00 2.57
5145 5912 4.275689 TCTTGAAGTGTGTAATGCCTTGTG 59.724 41.667 0.00 0.00 0.00 3.33
5187 5954 2.031682 CCGCTTGCTTAATATGTGCTCC 60.032 50.000 0.00 0.00 0.00 4.70
5226 5993 3.305267 CGCAAGTCACATCCCATTTTTGA 60.305 43.478 0.00 0.00 0.00 2.69
5255 6022 6.892658 AGTAAACTGACATGCATAACCAAA 57.107 33.333 0.00 0.00 0.00 3.28
5261 6028 6.567050 ACTGACATGCATAACCAAATGAATC 58.433 36.000 0.00 0.00 0.00 2.52
5493 6290 1.800315 CGGTGAGCTCCGTGTTACG 60.800 63.158 12.15 1.52 44.77 3.18
5553 6351 5.947663 TGTTTCTAATTCAGTCCCCTTTGA 58.052 37.500 0.00 0.00 0.00 2.69
5586 6384 1.022735 ATGTACCAGCCTACGAGACG 58.977 55.000 0.00 0.00 0.00 4.18
5729 6529 6.759497 ATTTTGGTCATTAACTCCTACTGC 57.241 37.500 0.00 0.00 0.00 4.40
5730 6530 3.906720 TGGTCATTAACTCCTACTGCC 57.093 47.619 0.00 0.00 0.00 4.85
5735 6535 1.188863 TTAACTCCTACTGCCGGACC 58.811 55.000 5.05 0.00 0.00 4.46
5749 6549 1.453155 CGGACCACTTTGGGATCTTG 58.547 55.000 0.00 0.00 43.37 3.02
5931 6734 5.712217 TGAAGTCGTTGAAACTAGTGTTG 57.288 39.130 0.00 0.00 36.39 3.33
5939 6742 0.536460 AAACTAGTGTTGGGGGCACG 60.536 55.000 0.00 0.00 41.36 5.34
5952 6755 2.498078 GGGGGCACGGAAATGAATAAAA 59.502 45.455 0.00 0.00 0.00 1.52
5956 6759 6.342111 GGGGCACGGAAATGAATAAAAATTA 58.658 36.000 0.00 0.00 0.00 1.40
5957 6760 6.989759 GGGGCACGGAAATGAATAAAAATTAT 59.010 34.615 0.00 0.00 0.00 1.28
6040 6845 0.606673 GCCCTGAGGTTTGACTGGTC 60.607 60.000 0.00 0.00 34.57 4.02
6043 6848 1.417890 CCTGAGGTTTGACTGGTCAGT 59.582 52.381 2.94 2.94 45.84 3.41
6053 6858 7.724061 AGGTTTGACTGGTCAGTTTTATTATGT 59.276 33.333 5.02 0.00 42.66 2.29
6055 6860 9.394477 GTTTGACTGGTCAGTTTTATTATGTTC 57.606 33.333 5.02 0.00 42.66 3.18
6128 6933 3.188460 GTCATGGCAATACAACGAACACT 59.812 43.478 0.00 0.00 0.00 3.55
6182 6987 2.427453 ACCACCTAGCGATGACTACAAG 59.573 50.000 0.00 0.00 0.00 3.16
6191 6996 3.579709 CGATGACTACAAGCACTGAAGT 58.420 45.455 0.00 0.00 0.00 3.01
6206 7011 3.208884 AAGTGAGTCGAAGGCGCGT 62.209 57.895 8.43 0.00 36.95 6.01
6207 7012 2.694829 AAGTGAGTCGAAGGCGCGTT 62.695 55.000 16.28 16.28 36.95 4.84
6221 7026 3.554692 CGTTGCCGTCATCGCCTC 61.555 66.667 0.00 0.00 35.54 4.70
6226 7031 2.835431 CCGTCATCGCCTCTCCCT 60.835 66.667 0.00 0.00 35.54 4.20
6227 7032 2.427245 CCGTCATCGCCTCTCCCTT 61.427 63.158 0.00 0.00 35.54 3.95
6228 7033 1.227089 CGTCATCGCCTCTCCCTTG 60.227 63.158 0.00 0.00 0.00 3.61
6230 7035 1.687146 TCATCGCCTCTCCCTTGCT 60.687 57.895 0.00 0.00 0.00 3.91
6231 7036 1.222936 CATCGCCTCTCCCTTGCTT 59.777 57.895 0.00 0.00 0.00 3.91
6264 7069 6.036735 GCAAAACTTGTTGTAGTAGACAGTCA 59.963 38.462 2.66 0.00 39.88 3.41
6277 7082 1.001597 GACAGTCAGGAAGTCGTCGTT 60.002 52.381 0.00 0.00 0.00 3.85
6286 7091 2.227388 GGAAGTCGTCGTTCTAAGGTCA 59.773 50.000 0.00 0.00 0.00 4.02
6287 7092 3.304928 GGAAGTCGTCGTTCTAAGGTCAA 60.305 47.826 0.00 0.00 0.00 3.18
6288 7093 3.279853 AGTCGTCGTTCTAAGGTCAAC 57.720 47.619 0.00 0.00 0.00 3.18
6289 7094 2.030451 AGTCGTCGTTCTAAGGTCAACC 60.030 50.000 0.00 0.00 0.00 3.77
6292 7097 2.030540 CGTCGTTCTAAGGTCAACCAGA 60.031 50.000 1.33 0.00 38.89 3.86
6293 7098 3.367087 CGTCGTTCTAAGGTCAACCAGAT 60.367 47.826 1.33 0.00 38.89 2.90
6294 7099 3.927142 GTCGTTCTAAGGTCAACCAGATG 59.073 47.826 1.33 0.00 38.89 2.90
6295 7100 3.830178 TCGTTCTAAGGTCAACCAGATGA 59.170 43.478 1.33 0.00 38.89 2.92
6311 7214 3.128242 CAGATGAGAGCAAATCCACCAAC 59.872 47.826 0.00 0.00 0.00 3.77
6332 7235 1.516365 ATAGATCCGCCGGAGACACG 61.516 60.000 13.12 0.00 34.05 4.49
6333 7236 2.881539 TAGATCCGCCGGAGACACGT 62.882 60.000 13.12 0.00 34.05 4.49
6336 7239 4.052229 CCGCCGGAGACACGTCTT 62.052 66.667 5.05 0.00 40.61 3.01
6341 7244 0.243907 CCGGAGACACGTCTTCACAT 59.756 55.000 0.00 0.00 40.61 3.21
6345 7248 0.320771 AGACACGTCTTCACATGCCC 60.321 55.000 0.00 0.00 36.31 5.36
6351 7254 1.003839 TCTTCACATGCCCACCGAC 60.004 57.895 0.00 0.00 0.00 4.79
6352 7255 1.302431 CTTCACATGCCCACCGACA 60.302 57.895 0.00 0.00 0.00 4.35
6370 7273 1.419762 ACAATGCTAGACACACCACCA 59.580 47.619 0.00 0.00 0.00 4.17
6371 7274 2.158682 ACAATGCTAGACACACCACCAA 60.159 45.455 0.00 0.00 0.00 3.67
6379 7282 1.755008 CACACCACCAAAACGGGGT 60.755 57.895 0.00 0.00 40.48 4.95
6382 7285 0.753848 CACCACCAAAACGGGGTCTT 60.754 55.000 0.00 0.00 35.77 3.01
6411 7314 5.131142 GGGAGAACCTTATTCCATCTTCAGA 59.869 44.000 0.00 0.00 35.85 3.27
6412 7315 6.183361 GGGAGAACCTTATTCCATCTTCAGAT 60.183 42.308 0.00 0.00 35.85 2.90
6416 7319 7.292120 AGAACCTTATTCCATCTTCAGATAGCT 59.708 37.037 0.00 0.00 32.63 3.32
6417 7320 6.767456 ACCTTATTCCATCTTCAGATAGCTG 58.233 40.000 0.24 0.24 43.67 4.24
6419 7322 4.978438 ATTCCATCTTCAGATAGCTGCT 57.022 40.909 7.57 7.57 42.01 4.24
6434 7337 2.206515 CTGCTGCCGTCTCGTCTTCT 62.207 60.000 0.00 0.00 0.00 2.85
6439 7342 0.241481 GCCGTCTCGTCTTCTTGAGT 59.759 55.000 0.00 0.00 33.88 3.41
6492 7396 0.326927 CTAAAAACGGAGCCCTCCCA 59.673 55.000 8.68 0.00 46.96 4.37
6504 7408 2.687566 CTCCCACCGGTAAGGGCT 60.688 66.667 22.65 0.00 46.96 5.19
6506 7410 4.109675 CCCACCGGTAAGGGCTGG 62.110 72.222 16.65 7.53 46.96 4.85
6507 7411 3.006728 CCACCGGTAAGGGCTGGA 61.007 66.667 6.87 0.00 46.96 3.86
6515 7419 0.623723 GTAAGGGCTGGAATCCACCA 59.376 55.000 18.13 0.00 38.33 4.17
6517 7421 2.438434 GGGCTGGAATCCACCACG 60.438 66.667 18.13 3.13 35.91 4.94
6519 7423 3.134127 GCTGGAATCCACCACGCC 61.134 66.667 0.00 0.00 35.91 5.68
6556 7460 3.744719 CGAAGACGAGGCGGACCA 61.745 66.667 0.00 0.00 42.66 4.02
6586 7490 4.966005 GCGGGAGGCAAAGTTTTC 57.034 55.556 0.00 0.00 42.87 2.29
6587 7491 2.341452 GCGGGAGGCAAAGTTTTCT 58.659 52.632 0.00 0.00 42.87 2.52
6588 7492 0.673985 GCGGGAGGCAAAGTTTTCTT 59.326 50.000 0.00 0.00 42.87 2.52
6589 7493 1.883926 GCGGGAGGCAAAGTTTTCTTA 59.116 47.619 0.00 0.00 42.87 2.10
6590 7494 2.095212 GCGGGAGGCAAAGTTTTCTTAG 60.095 50.000 0.00 0.00 42.87 2.18
6591 7495 2.488153 CGGGAGGCAAAGTTTTCTTAGG 59.512 50.000 0.00 0.00 39.48 2.69
6592 7496 2.826128 GGGAGGCAAAGTTTTCTTAGGG 59.174 50.000 0.00 0.00 39.48 3.53
6593 7497 3.499745 GGGAGGCAAAGTTTTCTTAGGGA 60.500 47.826 0.00 0.00 39.48 4.20
6594 7498 3.759086 GGAGGCAAAGTTTTCTTAGGGAG 59.241 47.826 0.00 0.00 39.48 4.30
6595 7499 3.759086 GAGGCAAAGTTTTCTTAGGGAGG 59.241 47.826 0.00 0.00 39.48 4.30
6596 7500 3.397955 AGGCAAAGTTTTCTTAGGGAGGA 59.602 43.478 0.00 0.00 39.48 3.71
6597 7501 3.759086 GGCAAAGTTTTCTTAGGGAGGAG 59.241 47.826 0.00 0.00 39.48 3.69
6598 7502 4.399219 GCAAAGTTTTCTTAGGGAGGAGT 58.601 43.478 0.00 0.00 39.48 3.85
6599 7503 4.456222 GCAAAGTTTTCTTAGGGAGGAGTC 59.544 45.833 0.00 0.00 39.48 3.36
6600 7504 5.746361 GCAAAGTTTTCTTAGGGAGGAGTCT 60.746 44.000 0.00 0.00 39.48 3.24
6601 7505 5.491323 AAGTTTTCTTAGGGAGGAGTCTG 57.509 43.478 0.00 0.00 38.51 3.51
6602 7506 3.841255 AGTTTTCTTAGGGAGGAGTCTGG 59.159 47.826 0.00 0.00 0.00 3.86
6603 7507 3.562108 TTTCTTAGGGAGGAGTCTGGT 57.438 47.619 0.00 0.00 0.00 4.00
6604 7508 3.562108 TTCTTAGGGAGGAGTCTGGTT 57.438 47.619 0.00 0.00 0.00 3.67
6605 7509 3.562108 TCTTAGGGAGGAGTCTGGTTT 57.438 47.619 0.00 0.00 0.00 3.27
6606 7510 3.870559 TCTTAGGGAGGAGTCTGGTTTT 58.129 45.455 0.00 0.00 0.00 2.43
6607 7511 5.019657 TCTTAGGGAGGAGTCTGGTTTTA 57.980 43.478 0.00 0.00 0.00 1.52
6608 7512 5.408824 TCTTAGGGAGGAGTCTGGTTTTAA 58.591 41.667 0.00 0.00 0.00 1.52
6609 7513 5.247792 TCTTAGGGAGGAGTCTGGTTTTAAC 59.752 44.000 0.00 0.00 0.00 2.01
6610 7514 3.599348 AGGGAGGAGTCTGGTTTTAACT 58.401 45.455 0.00 0.00 0.00 2.24
6611 7515 3.981375 AGGGAGGAGTCTGGTTTTAACTT 59.019 43.478 0.00 0.00 0.00 2.66
6612 7516 4.072839 GGGAGGAGTCTGGTTTTAACTTG 58.927 47.826 0.00 0.00 0.00 3.16
6613 7517 3.502595 GGAGGAGTCTGGTTTTAACTTGC 59.497 47.826 0.00 0.00 0.00 4.01
6614 7518 4.390264 GAGGAGTCTGGTTTTAACTTGCT 58.610 43.478 0.00 0.00 0.00 3.91
6615 7519 4.793201 AGGAGTCTGGTTTTAACTTGCTT 58.207 39.130 0.00 0.00 0.00 3.91
6616 7520 5.201243 AGGAGTCTGGTTTTAACTTGCTTT 58.799 37.500 0.00 0.00 0.00 3.51
6617 7521 5.067805 AGGAGTCTGGTTTTAACTTGCTTTG 59.932 40.000 0.00 0.00 0.00 2.77
6618 7522 5.163550 GGAGTCTGGTTTTAACTTGCTTTGT 60.164 40.000 0.00 0.00 0.00 2.83
6619 7523 6.280855 AGTCTGGTTTTAACTTGCTTTGTT 57.719 33.333 0.00 0.00 0.00 2.83
6620 7524 6.697395 AGTCTGGTTTTAACTTGCTTTGTTT 58.303 32.000 0.00 0.00 0.00 2.83
6621 7525 6.589907 AGTCTGGTTTTAACTTGCTTTGTTTG 59.410 34.615 0.00 0.00 0.00 2.93
6622 7526 5.350091 TCTGGTTTTAACTTGCTTTGTTTGC 59.650 36.000 0.00 0.00 0.00 3.68
6623 7527 5.241662 TGGTTTTAACTTGCTTTGTTTGCT 58.758 33.333 0.00 0.00 0.00 3.91
6624 7528 5.703130 TGGTTTTAACTTGCTTTGTTTGCTT 59.297 32.000 0.00 0.00 0.00 3.91
6625 7529 6.020984 GGTTTTAACTTGCTTTGTTTGCTTG 58.979 36.000 0.00 0.00 0.00 4.01
6626 7530 6.128418 GGTTTTAACTTGCTTTGTTTGCTTGA 60.128 34.615 0.00 0.00 0.00 3.02
6627 7531 7.413988 GGTTTTAACTTGCTTTGTTTGCTTGAT 60.414 33.333 0.00 0.00 0.00 2.57
6628 7532 7.608308 TTTAACTTGCTTTGTTTGCTTGATT 57.392 28.000 0.00 0.00 0.00 2.57
6629 7533 5.473796 AACTTGCTTTGTTTGCTTGATTG 57.526 34.783 0.00 0.00 0.00 2.67
6630 7534 4.506758 ACTTGCTTTGTTTGCTTGATTGT 58.493 34.783 0.00 0.00 0.00 2.71
6631 7535 4.330620 ACTTGCTTTGTTTGCTTGATTGTG 59.669 37.500 0.00 0.00 0.00 3.33
6632 7536 3.859443 TGCTTTGTTTGCTTGATTGTGT 58.141 36.364 0.00 0.00 0.00 3.72
6633 7537 3.864583 TGCTTTGTTTGCTTGATTGTGTC 59.135 39.130 0.00 0.00 0.00 3.67
6634 7538 3.061006 GCTTTGTTTGCTTGATTGTGTCG 60.061 43.478 0.00 0.00 0.00 4.35
6635 7539 4.350346 CTTTGTTTGCTTGATTGTGTCGA 58.650 39.130 0.00 0.00 0.00 4.20
6636 7540 3.332761 TGTTTGCTTGATTGTGTCGAC 57.667 42.857 9.11 9.11 0.00 4.20
6637 7541 2.286125 TGTTTGCTTGATTGTGTCGACG 60.286 45.455 11.62 0.00 0.00 5.12
6638 7542 0.865111 TTGCTTGATTGTGTCGACGG 59.135 50.000 11.62 0.00 0.00 4.79
6639 7543 0.032815 TGCTTGATTGTGTCGACGGA 59.967 50.000 11.62 0.00 0.00 4.69
6640 7544 1.144969 GCTTGATTGTGTCGACGGAA 58.855 50.000 11.62 6.29 0.00 4.30
6641 7545 1.529438 GCTTGATTGTGTCGACGGAAA 59.471 47.619 11.62 5.47 0.00 3.13
6642 7546 2.159627 GCTTGATTGTGTCGACGGAAAT 59.840 45.455 11.62 10.21 0.00 2.17
6643 7547 3.725010 GCTTGATTGTGTCGACGGAAATC 60.725 47.826 21.53 21.53 0.00 2.17
6644 7548 3.033368 TGATTGTGTCGACGGAAATCA 57.967 42.857 24.71 24.71 35.47 2.57
6645 7549 3.394719 TGATTGTGTCGACGGAAATCAA 58.605 40.909 25.59 17.13 35.05 2.57
6646 7550 3.431912 TGATTGTGTCGACGGAAATCAAG 59.568 43.478 25.59 0.00 35.05 3.02
6647 7551 1.144969 TGTGTCGACGGAAATCAAGC 58.855 50.000 11.62 0.00 0.00 4.01
6648 7552 1.144969 GTGTCGACGGAAATCAAGCA 58.855 50.000 11.62 0.00 0.00 3.91
6649 7553 1.136336 GTGTCGACGGAAATCAAGCAC 60.136 52.381 11.62 0.00 0.00 4.40
6650 7554 1.144969 GTCGACGGAAATCAAGCACA 58.855 50.000 0.00 0.00 0.00 4.57
6651 7555 1.732259 GTCGACGGAAATCAAGCACAT 59.268 47.619 0.00 0.00 0.00 3.21
6652 7556 1.731709 TCGACGGAAATCAAGCACATG 59.268 47.619 0.00 0.00 0.00 3.21
6653 7557 1.791555 CGACGGAAATCAAGCACATGC 60.792 52.381 0.00 0.00 42.49 4.06
6663 7567 2.177531 GCACATGCTTCGGCTGTG 59.822 61.111 0.00 12.54 44.68 3.66
6664 7568 2.620112 GCACATGCTTCGGCTGTGT 61.620 57.895 15.76 7.61 44.23 3.72
6665 7569 1.951510 CACATGCTTCGGCTGTGTT 59.048 52.632 0.00 0.00 41.06 3.32
6666 7570 0.110056 CACATGCTTCGGCTGTGTTC 60.110 55.000 0.00 0.00 41.06 3.18
6667 7571 1.133253 CATGCTTCGGCTGTGTTCG 59.867 57.895 0.00 0.00 42.37 3.95
6668 7572 2.034879 ATGCTTCGGCTGTGTTCGG 61.035 57.895 0.00 0.00 42.37 4.30
6669 7573 2.357034 GCTTCGGCTGTGTTCGGA 60.357 61.111 0.00 0.00 38.08 4.55
6670 7574 2.383527 GCTTCGGCTGTGTTCGGAG 61.384 63.158 0.00 0.00 38.08 4.63
6671 7575 1.289066 CTTCGGCTGTGTTCGGAGA 59.711 57.895 0.00 0.00 34.12 3.71
6672 7576 1.006571 TTCGGCTGTGTTCGGAGAC 60.007 57.895 0.00 0.00 34.32 3.36
6685 7589 4.004348 GAGACGCTCCACTCCAGA 57.996 61.111 0.00 0.00 0.00 3.86
6686 7590 2.268022 GAGACGCTCCACTCCAGAA 58.732 57.895 0.00 0.00 0.00 3.02
6687 7591 0.109039 GAGACGCTCCACTCCAGAAC 60.109 60.000 0.00 0.00 0.00 3.01
6688 7592 0.540830 AGACGCTCCACTCCAGAACT 60.541 55.000 0.00 0.00 0.00 3.01
6689 7593 0.109039 GACGCTCCACTCCAGAACTC 60.109 60.000 0.00 0.00 0.00 3.01
6690 7594 1.216710 CGCTCCACTCCAGAACTCC 59.783 63.158 0.00 0.00 0.00 3.85
6691 7595 1.216710 GCTCCACTCCAGAACTCCG 59.783 63.158 0.00 0.00 0.00 4.63
6692 7596 1.216710 CTCCACTCCAGAACTCCGC 59.783 63.158 0.00 0.00 0.00 5.54
6693 7597 1.228894 TCCACTCCAGAACTCCGCT 60.229 57.895 0.00 0.00 0.00 5.52
6694 7598 1.216710 CCACTCCAGAACTCCGCTC 59.783 63.158 0.00 0.00 0.00 5.03
6695 7599 1.216710 CACTCCAGAACTCCGCTCC 59.783 63.158 0.00 0.00 0.00 4.70
6696 7600 1.985116 ACTCCAGAACTCCGCTCCC 60.985 63.158 0.00 0.00 0.00 4.30
6697 7601 3.068691 TCCAGAACTCCGCTCCCG 61.069 66.667 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.148825 AGACGGGCTTGCGCTAGG 62.149 66.667 20.21 6.53 36.09 3.02
95 96 0.598065 GTGCTTGGTCATTGTGGGAC 59.402 55.000 0.00 0.00 34.52 4.46
96 97 0.539438 GGTGCTTGGTCATTGTGGGA 60.539 55.000 0.00 0.00 0.00 4.37
125 129 1.152943 TTTGGCGTGTGCAGGGTTA 60.153 52.632 0.00 0.00 45.35 2.85
132 136 1.285578 AAAATGTGTTTGGCGTGTGC 58.714 45.000 0.00 0.00 41.71 4.57
134 138 4.846779 ATCTAAAATGTGTTTGGCGTGT 57.153 36.364 0.00 0.00 0.00 4.49
157 165 0.536006 GGTTGGCACAGACAGCTCTT 60.536 55.000 0.00 0.00 42.39 2.85
179 187 2.983229 AGCTGCTTGTATGAAGGTCAG 58.017 47.619 0.00 0.00 0.00 3.51
242 250 1.896220 TGCAAGGAGTAGCAGGTTTG 58.104 50.000 0.00 0.00 35.51 2.93
259 267 3.032017 TGAAGTGCTACTCTCAGTTGC 57.968 47.619 3.49 3.49 45.06 4.17
293 301 2.956333 TGTATCCACTGTAGGTCCATCG 59.044 50.000 0.00 0.00 0.00 3.84
317 325 1.799181 CGGAGATTTCATCGCGTGACT 60.799 52.381 5.77 3.19 36.32 3.41
337 345 0.741221 GTTCCGTGATGGTCTCCAGC 60.741 60.000 0.00 0.00 40.77 4.85
392 400 3.695830 TTCTTACCTTGCTGATTCCGT 57.304 42.857 0.00 0.00 0.00 4.69
394 402 3.426292 GCGTTTCTTACCTTGCTGATTCC 60.426 47.826 0.00 0.00 0.00 3.01
398 410 2.248280 TGCGTTTCTTACCTTGCTGA 57.752 45.000 0.00 0.00 0.00 4.26
410 422 4.894798 TGTTTTTGACTTGTTGCGTTTC 57.105 36.364 0.00 0.00 0.00 2.78
432 444 3.980022 TCCTTGGGATTCTGGTATATGCA 59.020 43.478 0.00 0.00 0.00 3.96
444 456 5.209659 AGAGTACTTCGTATCCTTGGGATT 58.790 41.667 4.31 0.00 39.79 3.01
450 462 7.498570 CAGTTAGGTAGAGTACTTCGTATCCTT 59.501 40.741 0.00 0.00 0.00 3.36
462 474 6.382859 TGATCAAATGCCAGTTAGGTAGAGTA 59.617 38.462 0.00 0.00 40.61 2.59
463 475 5.189736 TGATCAAATGCCAGTTAGGTAGAGT 59.810 40.000 0.00 0.00 40.61 3.24
464 476 5.674525 TGATCAAATGCCAGTTAGGTAGAG 58.325 41.667 0.00 0.00 40.61 2.43
465 477 5.692115 TGATCAAATGCCAGTTAGGTAGA 57.308 39.130 0.00 0.00 40.61 2.59
466 478 6.150976 TGTTTGATCAAATGCCAGTTAGGTAG 59.849 38.462 23.05 0.00 34.56 3.18
565 577 1.154205 CGCGCCATTGGAAGAGTAGG 61.154 60.000 6.95 0.00 0.00 3.18
584 596 1.064134 GGCGATTGGGTTCGATTGC 59.936 57.895 0.00 0.00 41.62 3.56
588 600 2.183300 CGAGGCGATTGGGTTCGA 59.817 61.111 0.00 0.00 41.62 3.71
615 627 2.516930 CGGGGGTGATGGATGTGC 60.517 66.667 0.00 0.00 0.00 4.57
763 777 7.316544 TCGCTAAAAGAAAAGAAAAGTGTCT 57.683 32.000 0.00 0.00 0.00 3.41
764 778 7.305475 GCTTCGCTAAAAGAAAAGAAAAGTGTC 60.305 37.037 0.00 0.00 0.00 3.67
765 779 6.472486 GCTTCGCTAAAAGAAAAGAAAAGTGT 59.528 34.615 0.00 0.00 0.00 3.55
766 780 6.344234 CGCTTCGCTAAAAGAAAAGAAAAGTG 60.344 38.462 0.00 0.00 0.00 3.16
767 781 5.681543 CGCTTCGCTAAAAGAAAAGAAAAGT 59.318 36.000 0.00 0.00 0.00 2.66
825 839 2.888594 TGTAGCGCATCAGTCCTAAAC 58.111 47.619 11.47 0.00 0.00 2.01
879 893 2.044352 GTATTGTTGGGCCGGGCT 60.044 61.111 28.80 9.39 0.00 5.19
910 924 3.964411 AGTACTTCAGTATTTTGGGCCC 58.036 45.455 17.59 17.59 32.54 5.80
924 938 6.265649 TGAGCCCACTGAATATCTAGTACTTC 59.734 42.308 0.00 0.00 0.00 3.01
981 1019 1.301874 CGGGGCCAGTTCGTTAACA 60.302 57.895 4.39 0.00 38.12 2.41
994 1032 3.268103 AAGTGGGTGACATCGGGGC 62.268 63.158 0.00 0.00 0.00 5.80
1154 1192 3.792053 GAGGCGGCTCGGTACATGG 62.792 68.421 24.18 0.00 0.00 3.66
1258 1296 1.153168 GTGGCGTGATGGGTGCTAT 60.153 57.895 0.00 0.00 0.00 2.97
1334 1372 0.888736 TGACCAAACCACGGATGCTG 60.889 55.000 0.00 0.00 0.00 4.41
1406 1444 3.058293 GCAAACATTCAGACACCGATTCA 60.058 43.478 0.00 0.00 0.00 2.57
1413 1451 1.270550 CCAGGGCAAACATTCAGACAC 59.729 52.381 0.00 0.00 0.00 3.67
1461 1499 4.181578 GCTAACTCATCTTCGCACCTAAA 58.818 43.478 0.00 0.00 0.00 1.85
1462 1500 3.733988 CGCTAACTCATCTTCGCACCTAA 60.734 47.826 0.00 0.00 0.00 2.69
1463 1501 2.223502 CGCTAACTCATCTTCGCACCTA 60.224 50.000 0.00 0.00 0.00 3.08
1464 1502 1.469940 CGCTAACTCATCTTCGCACCT 60.470 52.381 0.00 0.00 0.00 4.00
1480 1518 5.293324 CCTATGCAACATAACAAACTCGCTA 59.707 40.000 0.00 0.00 0.00 4.26
1481 1519 4.094887 CCTATGCAACATAACAAACTCGCT 59.905 41.667 0.00 0.00 0.00 4.93
1516 1557 3.539604 CAGAGATGACCATTTCCCTGAC 58.460 50.000 0.00 0.00 0.00 3.51
1526 1567 1.532604 AACGACCGCAGAGATGACCA 61.533 55.000 0.00 0.00 0.00 4.02
1532 1573 1.005037 ATGCAAACGACCGCAGAGA 60.005 52.632 0.00 0.00 42.37 3.10
1533 1574 1.133253 CATGCAAACGACCGCAGAG 59.867 57.895 0.00 0.00 42.37 3.35
1534 1575 1.163420 AACATGCAAACGACCGCAGA 61.163 50.000 0.00 0.00 42.37 4.26
1535 1576 0.998226 CAACATGCAAACGACCGCAG 60.998 55.000 0.00 0.00 42.37 5.18
1536 1577 1.009108 CAACATGCAAACGACCGCA 60.009 52.632 0.00 0.00 43.45 5.69
1537 1578 1.729131 CCAACATGCAAACGACCGC 60.729 57.895 0.00 0.00 0.00 5.68
1538 1579 0.030101 AACCAACATGCAAACGACCG 59.970 50.000 0.00 0.00 0.00 4.79
1539 1580 1.486439 CAACCAACATGCAAACGACC 58.514 50.000 0.00 0.00 0.00 4.79
1540 1581 1.202359 ACCAACCAACATGCAAACGAC 60.202 47.619 0.00 0.00 0.00 4.34
1543 1584 7.665561 ATAATAAACCAACCAACATGCAAAC 57.334 32.000 0.00 0.00 0.00 2.93
1554 1595 7.093509 ACTCATTCCACCAATAATAAACCAACC 60.094 37.037 0.00 0.00 0.00 3.77
1616 1663 1.848388 TCATCAAGGCCATGAGTCCAT 59.152 47.619 16.89 0.00 31.76 3.41
1617 1664 1.288188 TCATCAAGGCCATGAGTCCA 58.712 50.000 16.89 0.00 31.76 4.02
1618 1665 2.653234 ATCATCAAGGCCATGAGTCC 57.347 50.000 16.89 0.00 33.74 3.85
1619 1666 4.082895 GCAATATCATCAAGGCCATGAGTC 60.083 45.833 16.89 0.00 33.74 3.36
1620 1667 3.825014 GCAATATCATCAAGGCCATGAGT 59.175 43.478 16.89 7.57 33.74 3.41
1621 1668 4.079970 AGCAATATCATCAAGGCCATGAG 58.920 43.478 16.89 8.69 33.74 2.90
1709 1756 9.959749 GAAACATTACAAGAACTAATGAAACCA 57.040 29.630 5.39 0.00 35.81 3.67
1770 1817 2.555325 GCGTAAAGGGGCTTTAACAAGT 59.445 45.455 0.00 0.00 37.62 3.16
1781 1828 2.817258 TGAAACAGATTGCGTAAAGGGG 59.183 45.455 0.00 0.00 0.00 4.79
1940 1987 7.118390 GCACAATGTATATCTACATCCAAGGTC 59.882 40.741 4.38 0.00 45.73 3.85
1960 2007 2.645838 ATATTCTGCCTCCGCACAAT 57.354 45.000 0.00 0.00 41.12 2.71
2065 2112 4.558178 TGCTGCAAGATGTAAACAATTGG 58.442 39.130 10.83 0.00 34.07 3.16
2175 2222 2.591429 CGTGCACCTGTCAGCCAA 60.591 61.111 12.15 0.00 0.00 4.52
2251 2298 1.141657 GGGCTCCACATGATCAGCTAA 59.858 52.381 0.00 0.00 32.14 3.09
2271 2318 2.286713 TGTTGTGATTTTCGTCTTGCCG 60.287 45.455 0.00 0.00 0.00 5.69
2280 2327 7.064490 ACACCATTTGAAAGTGTTGTGATTTTC 59.936 33.333 0.00 0.00 41.86 2.29
2750 2797 8.762481 TTCCACTAATCTATAGTACAGAAGCA 57.238 34.615 0.00 0.00 0.00 3.91
2993 3040 9.948747 ACTATAGTACTAACAGGATTTTAGGGT 57.051 33.333 6.70 0.00 31.78 4.34
3003 3050 5.008415 CCCACACGACTATAGTACTAACAGG 59.992 48.000 6.70 2.75 0.00 4.00
3125 3181 7.092716 GGTTCAGCAATTGATACAAGTTCATT 58.907 34.615 10.34 0.00 35.27 2.57
3293 3350 8.028354 CCAAAGCAAGAACAAATGTATGTCATA 58.972 33.333 0.00 0.00 35.48 2.15
3478 3535 8.338986 GTGCCTGTAAAAGATAAAATAGCTCTC 58.661 37.037 0.00 0.00 0.00 3.20
3690 3747 8.418662 GGAATTTAGTAAAAGTTGGACCACTTT 58.581 33.333 13.23 13.23 46.85 2.66
3733 3791 8.190784 GCATTATTAGTTACAACAAGCCTGAAT 58.809 33.333 0.00 0.00 0.00 2.57
3745 3803 7.279981 GGTCATGACACTGCATTATTAGTTACA 59.720 37.037 26.47 0.00 0.00 2.41
3801 3859 5.261209 ACAAAATAGTTTCTTGTGCTGCA 57.739 34.783 0.00 0.00 32.19 4.41
3860 3918 4.636249 GAGGGGATCTGCACAAAGTATAG 58.364 47.826 0.00 0.00 0.00 1.31
4413 4489 2.741486 TTAGCACGGTCCAGTTGGGC 62.741 60.000 0.00 0.00 39.63 5.36
4486 4562 6.505732 GCCACGATTATAAAAATTTCACGTGC 60.506 38.462 11.67 0.00 44.16 5.34
4625 4702 1.344114 ACCATTGGCACGAGCAAAAAT 59.656 42.857 7.26 0.67 44.61 1.82
4994 5760 6.966021 TGTTTCCATTTGCTAACTGTACTTC 58.034 36.000 0.00 0.00 0.00 3.01
5106 5873 4.689612 TCAAGATACAGATAAGCACCCC 57.310 45.455 0.00 0.00 0.00 4.95
5145 5912 4.034048 CGGTAGCTTGTCCATTATGTTGTC 59.966 45.833 0.00 0.00 0.00 3.18
5187 5954 5.292765 ACTTGCGAGTCCATGATATTGTAG 58.707 41.667 0.00 0.00 0.00 2.74
5226 5993 4.916983 TGCATGTCAGTTTACTTGCTTT 57.083 36.364 13.69 0.00 45.72 3.51
5312 6105 6.386927 ACACAGATTCCAGGGATACAGAAATA 59.613 38.462 0.00 0.00 39.74 1.40
5469 6266 2.809601 CGGAGCTCACCGTTTCCG 60.810 66.667 17.19 4.00 46.70 4.30
5493 6290 7.174599 ACACATTAGGTATAGATGACTCGGTAC 59.825 40.741 0.00 0.00 0.00 3.34
5553 6351 4.005650 CTGGTACATTGAGAACTGCACAT 58.994 43.478 0.00 0.00 38.20 3.21
5586 6384 2.639286 CTGAACTTGCCACGCACC 59.361 61.111 0.00 0.00 38.71 5.01
5729 6529 0.328258 AAGATCCCAAAGTGGTCCGG 59.672 55.000 0.00 0.00 35.17 5.14
5730 6530 1.271379 ACAAGATCCCAAAGTGGTCCG 60.271 52.381 0.00 0.00 35.17 4.79
5793 6595 8.797350 AACATATCTCATGAGAACAACATCAA 57.203 30.769 28.40 2.62 41.36 2.57
5910 6713 4.025145 CCCAACACTAGTTTCAACGACTTC 60.025 45.833 0.00 0.00 35.28 3.01
5931 6734 1.770294 TTATTCATTTCCGTGCCCCC 58.230 50.000 0.00 0.00 0.00 5.40
5957 6760 8.061857 GCGAGTTCAAAATTTCATCGTCATATA 58.938 33.333 0.00 0.00 0.00 0.86
5966 6769 5.291971 AGCAAAGCGAGTTCAAAATTTCAT 58.708 33.333 0.00 0.00 0.00 2.57
5999 6802 1.133809 AGGCAAGCCCCTGTTGAGTA 61.134 55.000 7.62 0.00 36.58 2.59
6000 6803 2.116125 GGCAAGCCCCTGTTGAGT 59.884 61.111 0.00 0.00 0.00 3.41
6001 6804 1.676967 GAGGCAAGCCCCTGTTGAG 60.677 63.158 7.62 0.00 34.69 3.02
6003 6806 2.677875 GGAGGCAAGCCCCTGTTG 60.678 66.667 7.62 0.00 34.69 3.33
6004 6807 4.351054 CGGAGGCAAGCCCCTGTT 62.351 66.667 7.62 0.00 34.69 3.16
6022 6827 0.764890 TGACCAGTCAAACCTCAGGG 59.235 55.000 0.00 0.00 36.53 4.45
6029 6834 9.394477 GAACATAATAAAACTGACCAGTCAAAC 57.606 33.333 2.84 0.00 41.58 2.93
6088 6893 6.709397 GCCATGACTGAAGATGAATAGATTGA 59.291 38.462 0.00 0.00 0.00 2.57
6106 6911 3.188460 AGTGTTCGTTGTATTGCCATGAC 59.812 43.478 0.00 0.00 0.00 3.06
6108 6913 3.829886 AGTGTTCGTTGTATTGCCATG 57.170 42.857 0.00 0.00 0.00 3.66
6157 6962 3.231207 AGTCATCGCTAGGTGGTCTAT 57.769 47.619 0.00 0.00 0.00 1.98
6169 6974 1.996292 TCAGTGCTTGTAGTCATCGC 58.004 50.000 0.00 0.00 0.00 4.58
6182 6987 1.423395 CCTTCGACTCACTTCAGTGC 58.577 55.000 1.74 0.00 45.25 4.40
6191 6996 2.733218 CAACGCGCCTTCGACTCA 60.733 61.111 5.73 0.00 38.10 3.41
6210 7015 1.227089 CAAGGGAGAGGCGATGACG 60.227 63.158 0.00 0.00 42.93 4.35
6220 7025 2.665000 CGGCTCAAGCAAGGGAGA 59.335 61.111 4.13 0.00 44.36 3.71
6221 7026 2.437359 CCGGCTCAAGCAAGGGAG 60.437 66.667 4.13 0.00 44.36 4.30
6226 7031 2.130426 TTTTGCCCGGCTCAAGCAA 61.130 52.632 11.61 10.53 44.32 3.91
6227 7032 2.520500 TTTTGCCCGGCTCAAGCA 60.521 55.556 11.61 0.00 44.36 3.91
6228 7033 2.049156 GTTTTGCCCGGCTCAAGC 60.049 61.111 11.61 2.10 41.14 4.01
6230 7035 1.040339 ACAAGTTTTGCCCGGCTCAA 61.040 50.000 11.61 0.00 0.00 3.02
6231 7036 1.040339 AACAAGTTTTGCCCGGCTCA 61.040 50.000 11.61 0.00 0.00 4.26
6264 7069 2.487372 GACCTTAGAACGACGACTTCCT 59.513 50.000 0.00 0.00 0.00 3.36
6277 7082 3.449018 GCTCTCATCTGGTTGACCTTAGA 59.551 47.826 1.34 0.00 36.82 2.10
6286 7091 3.350833 GTGGATTTGCTCTCATCTGGTT 58.649 45.455 0.00 0.00 0.00 3.67
6287 7092 2.356535 GGTGGATTTGCTCTCATCTGGT 60.357 50.000 0.00 0.00 0.00 4.00
6288 7093 2.295885 GGTGGATTTGCTCTCATCTGG 58.704 52.381 0.00 0.00 0.00 3.86
6289 7094 2.995283 TGGTGGATTTGCTCTCATCTG 58.005 47.619 0.00 0.00 0.00 2.90
6292 7097 2.086869 CGTTGGTGGATTTGCTCTCAT 58.913 47.619 0.00 0.00 0.00 2.90
6293 7098 1.071542 TCGTTGGTGGATTTGCTCTCA 59.928 47.619 0.00 0.00 0.00 3.27
6294 7099 1.808411 TCGTTGGTGGATTTGCTCTC 58.192 50.000 0.00 0.00 0.00 3.20
6295 7100 2.496899 ATCGTTGGTGGATTTGCTCT 57.503 45.000 0.00 0.00 0.00 4.09
6311 7214 1.235281 TGTCTCCGGCGGATCTATCG 61.235 60.000 31.23 16.85 0.00 2.92
6332 7235 1.003839 TCGGTGGGCATGTGAAGAC 60.004 57.895 0.00 0.00 0.00 3.01
6333 7236 1.003839 GTCGGTGGGCATGTGAAGA 60.004 57.895 0.00 0.00 0.00 2.87
6336 7239 0.959867 CATTGTCGGTGGGCATGTGA 60.960 55.000 0.00 0.00 0.00 3.58
6341 7244 1.078497 CTAGCATTGTCGGTGGGCA 60.078 57.895 0.00 0.00 0.00 5.36
6345 7248 1.726791 GTGTGTCTAGCATTGTCGGTG 59.273 52.381 0.00 0.00 0.00 4.94
6351 7254 2.183478 TGGTGGTGTGTCTAGCATTG 57.817 50.000 0.00 0.00 30.50 2.82
6352 7255 2.949177 TTGGTGGTGTGTCTAGCATT 57.051 45.000 0.00 0.00 35.18 3.56
6370 7273 1.228033 CCCGTCAAGACCCCGTTTT 60.228 57.895 0.00 0.00 0.00 2.43
6371 7274 2.428622 CCCGTCAAGACCCCGTTT 59.571 61.111 0.00 0.00 0.00 3.60
6379 7282 2.314071 TAAGGTTCTCCCCGTCAAGA 57.686 50.000 0.00 0.00 0.00 3.02
6382 7285 1.835531 GGAATAAGGTTCTCCCCGTCA 59.164 52.381 0.00 0.00 0.00 4.35
6411 7314 2.343163 GACGAGACGGCAGCAGCTAT 62.343 60.000 0.00 0.00 41.70 2.97
6412 7315 3.052620 GACGAGACGGCAGCAGCTA 62.053 63.158 0.00 0.00 41.70 3.32
6416 7319 1.806461 AAGAAGACGAGACGGCAGCA 61.806 55.000 0.00 0.00 37.34 4.41
6417 7320 1.080434 AAGAAGACGAGACGGCAGC 60.080 57.895 0.00 0.00 37.34 5.25
6419 7322 0.241213 CTCAAGAAGACGAGACGGCA 59.759 55.000 0.00 0.00 37.34 5.69
6434 7337 4.409574 TGTTAGGGTTTGTGTCCTACTCAA 59.590 41.667 0.00 0.00 35.56 3.02
6439 7342 5.757988 ACTTTTGTTAGGGTTTGTGTCCTA 58.242 37.500 0.00 0.00 34.75 2.94
6492 7396 1.632965 GGATTCCAGCCCTTACCGGT 61.633 60.000 13.98 13.98 0.00 5.28
6506 7410 2.406616 ATTGCGGCGTGGTGGATTC 61.407 57.895 9.37 0.00 0.00 2.52
6507 7411 2.361104 ATTGCGGCGTGGTGGATT 60.361 55.556 9.37 0.00 0.00 3.01
6537 7441 4.493747 GTCCGCCTCGTCTTCGGG 62.494 72.222 0.00 0.00 43.10 5.14
6539 7443 3.685214 CTGGTCCGCCTCGTCTTCG 62.685 68.421 0.00 0.00 38.55 3.79
6541 7445 4.070552 GCTGGTCCGCCTCGTCTT 62.071 66.667 0.00 0.00 35.27 3.01
6582 7486 3.870559 ACCAGACTCCTCCCTAAGAAAA 58.129 45.455 0.00 0.00 0.00 2.29
6583 7487 3.562108 ACCAGACTCCTCCCTAAGAAA 57.438 47.619 0.00 0.00 0.00 2.52
6584 7488 3.562108 AACCAGACTCCTCCCTAAGAA 57.438 47.619 0.00 0.00 0.00 2.52
6585 7489 3.562108 AAACCAGACTCCTCCCTAAGA 57.438 47.619 0.00 0.00 0.00 2.10
6586 7490 5.248705 AGTTAAAACCAGACTCCTCCCTAAG 59.751 44.000 0.00 0.00 0.00 2.18
6587 7491 5.160386 AGTTAAAACCAGACTCCTCCCTAA 58.840 41.667 0.00 0.00 0.00 2.69
6588 7492 4.759953 AGTTAAAACCAGACTCCTCCCTA 58.240 43.478 0.00 0.00 0.00 3.53
6589 7493 3.599348 AGTTAAAACCAGACTCCTCCCT 58.401 45.455 0.00 0.00 0.00 4.20
6590 7494 4.072839 CAAGTTAAAACCAGACTCCTCCC 58.927 47.826 0.00 0.00 0.00 4.30
6591 7495 3.502595 GCAAGTTAAAACCAGACTCCTCC 59.497 47.826 0.00 0.00 0.00 4.30
6592 7496 4.390264 AGCAAGTTAAAACCAGACTCCTC 58.610 43.478 0.00 0.00 0.00 3.71
6593 7497 4.439253 AGCAAGTTAAAACCAGACTCCT 57.561 40.909 0.00 0.00 0.00 3.69
6594 7498 5.163550 ACAAAGCAAGTTAAAACCAGACTCC 60.164 40.000 0.00 0.00 0.00 3.85
6595 7499 5.891451 ACAAAGCAAGTTAAAACCAGACTC 58.109 37.500 0.00 0.00 0.00 3.36
6596 7500 5.914898 ACAAAGCAAGTTAAAACCAGACT 57.085 34.783 0.00 0.00 0.00 3.24
6597 7501 6.672118 GCAAACAAAGCAAGTTAAAACCAGAC 60.672 38.462 0.00 0.00 0.00 3.51
6598 7502 5.350091 GCAAACAAAGCAAGTTAAAACCAGA 59.650 36.000 0.00 0.00 0.00 3.86
6599 7503 5.351189 AGCAAACAAAGCAAGTTAAAACCAG 59.649 36.000 0.00 0.00 0.00 4.00
6600 7504 5.241662 AGCAAACAAAGCAAGTTAAAACCA 58.758 33.333 0.00 0.00 0.00 3.67
6601 7505 5.794687 AGCAAACAAAGCAAGTTAAAACC 57.205 34.783 0.00 0.00 0.00 3.27
6602 7506 6.826612 TCAAGCAAACAAAGCAAGTTAAAAC 58.173 32.000 0.00 0.00 0.00 2.43
6603 7507 7.608308 ATCAAGCAAACAAAGCAAGTTAAAA 57.392 28.000 0.00 0.00 0.00 1.52
6604 7508 7.118971 ACAATCAAGCAAACAAAGCAAGTTAAA 59.881 29.630 0.00 0.00 0.00 1.52
6605 7509 6.593382 ACAATCAAGCAAACAAAGCAAGTTAA 59.407 30.769 0.00 0.00 0.00 2.01
6606 7510 6.035866 CACAATCAAGCAAACAAAGCAAGTTA 59.964 34.615 0.00 0.00 0.00 2.24
6607 7511 4.937015 ACAATCAAGCAAACAAAGCAAGTT 59.063 33.333 0.00 0.00 0.00 2.66
6608 7512 4.330620 CACAATCAAGCAAACAAAGCAAGT 59.669 37.500 0.00 0.00 0.00 3.16
6609 7513 4.330620 ACACAATCAAGCAAACAAAGCAAG 59.669 37.500 0.00 0.00 0.00 4.01
6610 7514 4.252073 ACACAATCAAGCAAACAAAGCAA 58.748 34.783 0.00 0.00 0.00 3.91
6611 7515 3.859443 ACACAATCAAGCAAACAAAGCA 58.141 36.364 0.00 0.00 0.00 3.91
6612 7516 3.061006 CGACACAATCAAGCAAACAAAGC 60.061 43.478 0.00 0.00 0.00 3.51
6613 7517 4.204978 GTCGACACAATCAAGCAAACAAAG 59.795 41.667 11.55 0.00 0.00 2.77
6614 7518 4.101942 GTCGACACAATCAAGCAAACAAA 58.898 39.130 11.55 0.00 0.00 2.83
6615 7519 3.690422 GTCGACACAATCAAGCAAACAA 58.310 40.909 11.55 0.00 0.00 2.83
6616 7520 2.286125 CGTCGACACAATCAAGCAAACA 60.286 45.455 17.16 0.00 0.00 2.83
6617 7521 2.298300 CGTCGACACAATCAAGCAAAC 58.702 47.619 17.16 0.00 0.00 2.93
6618 7522 1.262950 CCGTCGACACAATCAAGCAAA 59.737 47.619 17.16 0.00 0.00 3.68
6619 7523 0.865111 CCGTCGACACAATCAAGCAA 59.135 50.000 17.16 0.00 0.00 3.91
6620 7524 0.032815 TCCGTCGACACAATCAAGCA 59.967 50.000 17.16 0.00 0.00 3.91
6621 7525 1.144969 TTCCGTCGACACAATCAAGC 58.855 50.000 17.16 0.00 0.00 4.01
6622 7526 3.431912 TGATTTCCGTCGACACAATCAAG 59.568 43.478 22.38 4.28 32.25 3.02
6623 7527 3.394719 TGATTTCCGTCGACACAATCAA 58.605 40.909 22.38 12.04 32.25 2.57
6624 7528 3.033368 TGATTTCCGTCGACACAATCA 57.967 42.857 21.44 21.44 32.64 2.57
6625 7529 3.725010 GCTTGATTTCCGTCGACACAATC 60.725 47.826 17.16 17.74 0.00 2.67
6626 7530 2.159627 GCTTGATTTCCGTCGACACAAT 59.840 45.455 17.16 9.77 0.00 2.71
6627 7531 1.529438 GCTTGATTTCCGTCGACACAA 59.471 47.619 17.16 4.11 0.00 3.33
6628 7532 1.144969 GCTTGATTTCCGTCGACACA 58.855 50.000 17.16 0.00 0.00 3.72
6629 7533 1.136336 GTGCTTGATTTCCGTCGACAC 60.136 52.381 17.16 0.00 0.00 3.67
6630 7534 1.144969 GTGCTTGATTTCCGTCGACA 58.855 50.000 17.16 0.00 0.00 4.35
6631 7535 1.144969 TGTGCTTGATTTCCGTCGAC 58.855 50.000 5.18 5.18 0.00 4.20
6632 7536 1.731709 CATGTGCTTGATTTCCGTCGA 59.268 47.619 0.00 0.00 0.00 4.20
6633 7537 1.791555 GCATGTGCTTGATTTCCGTCG 60.792 52.381 0.00 0.00 38.21 5.12
6634 7538 1.900237 GCATGTGCTTGATTTCCGTC 58.100 50.000 0.00 0.00 38.21 4.79
6646 7550 2.133742 AACACAGCCGAAGCATGTGC 62.134 55.000 13.72 0.00 44.80 4.57
6647 7551 0.110056 GAACACAGCCGAAGCATGTG 60.110 55.000 12.77 12.77 45.61 3.21
6648 7552 1.568612 CGAACACAGCCGAAGCATGT 61.569 55.000 0.00 0.00 43.56 3.21
6649 7553 1.133253 CGAACACAGCCGAAGCATG 59.867 57.895 0.00 0.00 43.56 4.06
6650 7554 2.034879 CCGAACACAGCCGAAGCAT 61.035 57.895 0.00 0.00 43.56 3.79
6651 7555 2.664851 CCGAACACAGCCGAAGCA 60.665 61.111 0.00 0.00 43.56 3.91
6652 7556 2.357034 TCCGAACACAGCCGAAGC 60.357 61.111 0.00 0.00 40.32 3.86
6653 7557 1.009389 GTCTCCGAACACAGCCGAAG 61.009 60.000 0.00 0.00 0.00 3.79
6654 7558 1.006571 GTCTCCGAACACAGCCGAA 60.007 57.895 0.00 0.00 0.00 4.30
6655 7559 2.649034 GTCTCCGAACACAGCCGA 59.351 61.111 0.00 0.00 0.00 5.54
6656 7560 2.805353 CGTCTCCGAACACAGCCG 60.805 66.667 0.00 0.00 35.63 5.52
6657 7561 3.112709 GCGTCTCCGAACACAGCC 61.113 66.667 0.00 0.00 35.63 4.85
6658 7562 2.049063 AGCGTCTCCGAACACAGC 60.049 61.111 0.00 0.00 35.63 4.40
6659 7563 1.444553 GGAGCGTCTCCGAACACAG 60.445 63.158 9.63 0.00 41.08 3.66
6660 7564 2.649034 GGAGCGTCTCCGAACACA 59.351 61.111 9.63 0.00 41.08 3.72
6668 7572 0.109039 GTTCTGGAGTGGAGCGTCTC 60.109 60.000 0.00 0.00 0.00 3.36
6669 7573 0.540830 AGTTCTGGAGTGGAGCGTCT 60.541 55.000 0.00 0.00 0.00 4.18
6670 7574 0.109039 GAGTTCTGGAGTGGAGCGTC 60.109 60.000 0.00 0.00 0.00 5.19
6671 7575 1.536943 GGAGTTCTGGAGTGGAGCGT 61.537 60.000 0.00 0.00 0.00 5.07
6672 7576 1.216710 GGAGTTCTGGAGTGGAGCG 59.783 63.158 0.00 0.00 0.00 5.03
6673 7577 1.216710 CGGAGTTCTGGAGTGGAGC 59.783 63.158 0.00 0.00 0.00 4.70
6674 7578 1.216710 GCGGAGTTCTGGAGTGGAG 59.783 63.158 0.00 0.00 0.00 3.86
6675 7579 1.228894 AGCGGAGTTCTGGAGTGGA 60.229 57.895 0.00 0.00 0.00 4.02
6676 7580 1.216710 GAGCGGAGTTCTGGAGTGG 59.783 63.158 0.00 0.00 33.98 4.00
6677 7581 1.216710 GGAGCGGAGTTCTGGAGTG 59.783 63.158 0.00 0.00 38.04 3.51
6678 7582 1.985116 GGGAGCGGAGTTCTGGAGT 60.985 63.158 0.00 0.00 38.04 3.85
6679 7583 2.896443 GGGAGCGGAGTTCTGGAG 59.104 66.667 0.00 0.00 38.04 3.86
6680 7584 3.068691 CGGGAGCGGAGTTCTGGA 61.069 66.667 0.00 0.00 38.04 3.86
6681 7585 4.148825 CCGGGAGCGGAGTTCTGG 62.149 72.222 0.00 0.00 38.04 3.86
6682 7586 3.068691 TCCGGGAGCGGAGTTCTG 61.069 66.667 0.00 0.00 38.04 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.