AutoCloner

Multiple sequence alignment - TraesCS3D01G109200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS3D01G109200	chr3D	100.000	2264	0	0	1	2264	62370597	62368334	0.000000e+00	4181
1	TraesCS3D01G109200	chr3D	99.432	176	0	1	2090	2264	313124900	313124725	3.630000e-83	318
2	TraesCS3D01G109200	chr3D	85.606	132	18	1	1959	2090	62361455	62361325	1.090000e-28	137
3	TraesCS3D01G109200	chr6D	95.341	2082	95	2	1	2081	293060948	293058868	0.000000e+00	3306
4	TraesCS3D01G109200	chr6D	98.333	180	1	2	2087	2264	156527759	156527938	4.690000e-82	315
5	TraesCS3D01G109200	chr3A	90.422	2109	155	24	1	2085	145558981	145556896	0.000000e+00	2732
6	TraesCS3D01G109200	chr1D	92.666	1909	108	14	1	1889	297552131	297550235	0.000000e+00	2721
7	TraesCS3D01G109200	chr1D	99.432	176	0	1	2090	2264	204122107	204121932	3.630000e-83	318
8	TraesCS3D01G109200	chr5B	91.607	1954	113	17	1	1953	578837511	578835608	0.000000e+00	2652
9	TraesCS3D01G109200	chr5B	95.171	1429	66	3	1	1428	491840948	491839522	0.000000e+00	2254
10	TraesCS3D01G109200	chr5B	86.567	134	15	3	1854	1985	491717422	491717290	6.520000e-31	145
11	TraesCS3D01G109200	chr5B	86.869	99	12	1	1959	2057	215734706	215734609	2.380000e-20	110
12	TraesCS3D01G109200	chr4A	90.877	2006	138	27	3	1985	664930506	664928523	0.000000e+00	2649
13	TraesCS3D01G109200	chr4A	90.717	1896	114	23	1	1889	737660770	737662610	0.000000e+00	2470
14	TraesCS3D01G109200	chr5D	92.332	1878	112	20	1	1871	313383467	313381615	0.000000e+00	2641
15	TraesCS3D01G109200	chr5D	92.482	838	42	14	1	836	485079040	485078222	0.000000e+00	1179
16	TraesCS3D01G109200	chr2B	91.368	1923	111	25	3	1880	596098504	596100416	0.000000e+00	2580
17	TraesCS3D01G109200	chr7B	90.558	1864	121	25	1	1857	34282267	34280452	0.000000e+00	2416
18	TraesCS3D01G109200	chr7B	87.000	100	10	3	1959	2057	720233870	720233773	2.380000e-20	110
19	TraesCS3D01G109200	chr2D	94.586	1570	72	4	515	2084	641205590	641204034	0.000000e+00	2416
20	TraesCS3D01G109200	chr2D	98.352	182	2	1	2084	2264	529481027	529481208	3.630000e-83	318
21	TraesCS3D01G109200	chr6B	89.075	1913	146	34	1	1886	578524261	578526137	0.000000e+00	2316
22	TraesCS3D01G109200	chr7D	90.599	851	48	7	1257	2085	21073387	21072547	0.000000e+00	1099
23	TraesCS3D01G109200	chr7D	98.895	181	0	2	2085	2264	234884143	234883964	2.810000e-84	322
24	TraesCS3D01G109200	chr7D	98.876	178	1	1	2088	2264	126642626	126642803	1.310000e-82	316
25	TraesCS3D01G109200	chr7D	86.598	194	26	0	1864	2057	16797867	16797674	4.900000e-52	215
26	TraesCS3D01G109200	chr7D	89.000	100	8	3	1959	2057	16797485	16797388	1.100000e-23	121
27	TraesCS3D01G109200	chr3B	99.432	176	0	1	2090	2264	652542464	652542639	3.630000e-83	318
28	TraesCS3D01G109200	chr3B	96.791	187	2	4	2081	2264	589056128	589056313	2.180000e-80	309
29	TraesCS3D01G109200	chr3B	87.000	100	13	0	1959	2058	16201548	16201449	1.840000e-21	113
30	TraesCS3D01G109200	chr4D	96.809	188	4	2	2079	2264	309756160	309755973	1.690000e-81	313
31	TraesCS3D01G109200	chr7A	88.144	194	21	2	1864	2056	595031194	595031002	1.750000e-56	230
32	TraesCS3D01G109200	chr1A	97.959	98	2	0	1667	1764	432262411	432262508	1.080000e-38	171

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS3D01G109200	chr3D	62368334	62370597	2263	True	4181	4181	100.000	1	2264	1	chr3D.!!$R2	2263
1	TraesCS3D01G109200	chr6D	293058868	293060948	2080	True	3306	3306	95.341	1	2081	1	chr6D.!!$R1	2080
2	TraesCS3D01G109200	chr3A	145556896	145558981	2085	True	2732	2732	90.422	1	2085	1	chr3A.!!$R1	2084
3	TraesCS3D01G109200	chr1D	297550235	297552131	1896	True	2721	2721	92.666	1	1889	1	chr1D.!!$R2	1888
4	TraesCS3D01G109200	chr5B	578835608	578837511	1903	True	2652	2652	91.607	1	1953	1	chr5B.!!$R4	1952
5	TraesCS3D01G109200	chr5B	491839522	491840948	1426	True	2254	2254	95.171	1	1428	1	chr5B.!!$R3	1427
6	TraesCS3D01G109200	chr4A	664928523	664930506	1983	True	2649	2649	90.877	3	1985	1	chr4A.!!$R1	1982
7	TraesCS3D01G109200	chr4A	737660770	737662610	1840	False	2470	2470	90.717	1	1889	1	chr4A.!!$F1	1888
8	TraesCS3D01G109200	chr5D	313381615	313383467	1852	True	2641	2641	92.332	1	1871	1	chr5D.!!$R1	1870
9	TraesCS3D01G109200	chr5D	485078222	485079040	818	True	1179	1179	92.482	1	836	1	chr5D.!!$R2	835
10	TraesCS3D01G109200	chr2B	596098504	596100416	1912	False	2580	2580	91.368	3	1880	1	chr2B.!!$F1	1877
11	TraesCS3D01G109200	chr7B	34280452	34282267	1815	True	2416	2416	90.558	1	1857	1	chr7B.!!$R1	1856
12	TraesCS3D01G109200	chr2D	641204034	641205590	1556	True	2416	2416	94.586	515	2084	1	chr2D.!!$R1	1569
13	TraesCS3D01G109200	chr6B	578524261	578526137	1876	False	2316	2316	89.075	1	1886	1	chr6B.!!$F1	1885
14	TraesCS3D01G109200	chr7D	21072547	21073387	840	True	1099	1099	90.599	1257	2085	1	chr7D.!!$R1	828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
539	542	0.469917	GGCATTCCTAGCACTAGCCA	59.53	55.0	0.0	0.0	43.56	4.75	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2206	2457	0.252513	TGGCACTGGGCTCTAGGTTA	60.253	55.0	0.21	0.0	44.01	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
75	76	3.754323	GACGGTTTTCAATATGGTGGTGA	59.246	43.478	0.00	0.00	0.00	4.02
78	79	4.157656	CGGTTTTCAATATGGTGGTGATGT	59.842	41.667	0.00	0.00	0.00	3.06
159	161	2.029649	GGCCATGCTCGCATTTGATAAT	60.030	45.455	0.00	0.00	33.90	1.28
165	167	1.872952	CTCGCATTTGATAATGGCGGA	59.127	47.619	0.00	0.00	41.21	5.54
275	277	3.146066	CGATTTCACCCTTTCTTGGACA	58.854	45.455	0.00	0.00	0.00	4.02
310	312	2.906389	TGAGTACCATGGCCCTCATATC	59.094	50.000	23.38	8.12	34.12	1.63
393	395	2.369860	GTGATATGGATGACCTGGCTGA	59.630	50.000	0.00	0.00	37.04	4.26
394	396	3.008813	GTGATATGGATGACCTGGCTGAT	59.991	47.826	0.00	0.00	37.04	2.90
429	431	4.434713	AACAATTTGGTAGCGGTCATTC	57.565	40.909	0.78	0.00	0.00	2.67
513	516	6.165700	ACATGCAAGAAAAGGAAAACATCT	57.834	33.333	0.00	0.00	0.00	2.90
539	542	0.469917	GGCATTCCTAGCACTAGCCA	59.530	55.000	0.00	0.00	43.56	4.75
549	552	4.530161	CCTAGCACTAGCCATAGAGGAAAT	59.470	45.833	0.00	0.00	43.56	2.17
639	645	0.886490	CAAGTGACAGAGGTGGTGGC	60.886	60.000	0.00	0.00	0.00	5.01
683	725	1.006043	TGCTAGAGGTGCTAGTGGTCT	59.994	52.381	0.00	0.00	46.81	3.85
693	735	2.312390	GCTAGTGGTCTTAGAGGGAGG	58.688	57.143	0.00	0.00	0.00	4.30
706	754	2.023501	AGAGGGAGGACAAGTGCTAGAT	60.024	50.000	0.00	0.00	0.00	1.98
853	931	5.307976	AGAGGAATGGTTGATAATGGATCGA	59.692	40.000	0.00	0.00	37.38	3.59
878	956	5.357032	CCTTCGGTTATTTGCTTAATCCAGT	59.643	40.000	0.00	0.00	0.00	4.00
994	1072	9.296400	GTCTTGTGCTAACAATTGTTCTTTTTA	57.704	29.630	26.46	7.99	45.12	1.52
1008	1086	5.163663	TGTTCTTTTTATAGGCATGGCTTCG	60.164	40.000	28.30	8.19	0.00	3.79
1152	1230	2.024414	GTTTGCAAGGTGAAGGTGTCT	58.976	47.619	0.00	0.00	0.00	3.41
1164	1242	1.045407	AGGTGTCTACTGACCGCAAA	58.955	50.000	0.00	0.00	42.28	3.68
1219	1297	3.696051	GTGTCCCAACTATGCACATGATT	59.304	43.478	0.00	0.00	0.00	2.57
1494	1575	1.169577	GAGAAGGAGTCTCGTGAGCA	58.830	55.000	0.00	0.00	43.46	4.26
1565	1646	5.568620	AGAAGAGAGGGCAAGAAAACTTA	57.431	39.130	0.00	0.00	0.00	2.24
1603	1684	2.750637	GAGGAGGACGAGGCACGA	60.751	66.667	12.15	0.00	45.77	4.35
1619	1700	2.548067	GCACGAGACAAGAAGGGAAAGA	60.548	50.000	0.00	0.00	0.00	2.52
1656	1737	5.324409	TCAGTAGACAAATGGAAAAGGCAT	58.676	37.500	0.00	0.00	0.00	4.40
1764	1940	2.986479	CGAGACATCGTGTGTGATGAAA	59.014	45.455	10.45	0.00	46.98	2.69
1780	1988	8.869897	GTGTGATGAAATTGTAATTCGAGACTA	58.130	33.333	0.00	0.00	0.00	2.59
1781	1989	9.599866	TGTGATGAAATTGTAATTCGAGACTAT	57.400	29.630	0.00	0.00	0.00	2.12
1822	2051	9.709495	ATTATGTGCAAACTATGTTTGTCATTT	57.291	25.926	24.12	16.55	37.91	2.32
1898	2127	8.143673	TCATATTTTGGGTTGATTTCCAATGA	57.856	30.769	0.00	0.00	41.96	2.57
2003	2254	1.484065	GGGTCCCTATCCAGAGAGCAT	60.484	57.143	0.00	0.00	0.00	3.79
2042	2293	2.203139	CACACCCAGACGCCACAA	60.203	61.111	0.00	0.00	0.00	3.33
2087	2338	3.050275	GTCAACCAGACGCCAGGC	61.050	66.667	0.00	0.00	37.53	4.85
2088	2339	3.555324	TCAACCAGACGCCAGGCA	61.555	61.111	13.30	0.00	0.00	4.75
2089	2340	3.357079	CAACCAGACGCCAGGCAC	61.357	66.667	13.30	4.76	0.00	5.01
2090	2341	3.560251	AACCAGACGCCAGGCACT	61.560	61.111	13.30	7.31	43.88	4.40
2102	2353	3.283020	AGGCACTGATACGTCTCCA	57.717	52.632	0.00	0.00	37.18	3.86
2103	2354	1.557099	AGGCACTGATACGTCTCCAA	58.443	50.000	0.00	0.00	37.18	3.53
2104	2355	1.204941	AGGCACTGATACGTCTCCAAC	59.795	52.381	0.00	0.00	37.18	3.77
2121	2372	9.836076	CGTCTCCAACGTATCTATAATTTATGA	57.164	33.333	0.00	0.00	46.42	2.15
2169	2420	9.812347	TCCATCTAGGATGTTTTATATGCATTT	57.188	29.630	3.54	0.00	43.07	2.32
2210	2461	8.584063	TGATTTTTGGGACTAACCTATTAACC	57.416	34.615	0.00	0.00	38.98	2.85
2211	2462	8.395605	TGATTTTTGGGACTAACCTATTAACCT	58.604	33.333	0.00	0.00	38.98	3.50
2212	2463	9.910267	GATTTTTGGGACTAACCTATTAACCTA	57.090	33.333	0.00	0.00	38.98	3.08
2213	2464	9.916360	ATTTTTGGGACTAACCTATTAACCTAG	57.084	33.333	0.00	0.00	38.98	3.02
2214	2465	8.683776	TTTTGGGACTAACCTATTAACCTAGA	57.316	34.615	0.00	0.00	38.98	2.43
2215	2466	7.909485	TTGGGACTAACCTATTAACCTAGAG	57.091	40.000	0.00	0.00	38.98	2.43
2216	2467	5.837438	TGGGACTAACCTATTAACCTAGAGC	59.163	44.000	0.00	0.00	38.98	4.09
2217	2468	5.245751	GGGACTAACCTATTAACCTAGAGCC	59.754	48.000	0.00	0.00	38.98	4.70
2218	2469	5.245751	GGACTAACCTATTAACCTAGAGCCC	59.754	48.000	0.00	0.00	35.41	5.19
2219	2470	5.785123	ACTAACCTATTAACCTAGAGCCCA	58.215	41.667	0.00	0.00	0.00	5.36
2220	2471	5.839606	ACTAACCTATTAACCTAGAGCCCAG	59.160	44.000	0.00	0.00	0.00	4.45
2221	2472	4.282292	ACCTATTAACCTAGAGCCCAGT	57.718	45.455	0.00	0.00	0.00	4.00
2222	2473	3.967987	ACCTATTAACCTAGAGCCCAGTG	59.032	47.826	0.00	0.00	0.00	3.66
2223	2474	3.244249	CCTATTAACCTAGAGCCCAGTGC	60.244	52.174	0.00	0.00	41.71	4.40
2224	2475	0.909623	TTAACCTAGAGCCCAGTGCC	59.090	55.000	0.00	0.00	42.71	5.01
2225	2476	0.252513	TAACCTAGAGCCCAGTGCCA	60.253	55.000	0.00	0.00	42.71	4.92
2226	2477	1.557269	AACCTAGAGCCCAGTGCCAG	61.557	60.000	0.00	0.00	42.71	4.85
2227	2478	1.992277	CCTAGAGCCCAGTGCCAGT	60.992	63.158	0.00	0.00	42.71	4.00
2228	2479	1.557269	CCTAGAGCCCAGTGCCAGTT	61.557	60.000	0.00	0.00	42.71	3.16
2229	2480	0.326264	CTAGAGCCCAGTGCCAGTTT	59.674	55.000	0.00	0.00	42.71	2.66
2230	2481	0.324943	TAGAGCCCAGTGCCAGTTTC	59.675	55.000	0.00	0.00	42.71	2.78
2231	2482	1.073897	GAGCCCAGTGCCAGTTTCT	59.926	57.895	0.00	0.00	42.71	2.52
2232	2483	1.228367	AGCCCAGTGCCAGTTTCTG	60.228	57.895	0.00	0.00	42.71	3.02
2233	2484	1.529244	GCCCAGTGCCAGTTTCTGT	60.529	57.895	0.00	0.00	0.00	3.41
2234	2485	1.109323	GCCCAGTGCCAGTTTCTGTT	61.109	55.000	0.00	0.00	0.00	3.16
2235	2486	1.402787	CCCAGTGCCAGTTTCTGTTT	58.597	50.000	0.00	0.00	0.00	2.83
2236	2487	1.756538	CCCAGTGCCAGTTTCTGTTTT	59.243	47.619	0.00	0.00	0.00	2.43
2237	2488	2.168313	CCCAGTGCCAGTTTCTGTTTTT	59.832	45.455	0.00	0.00	0.00	1.94
2260	2511	9.765795	TTTTTCCTTGTTTTGAGTTTTACAGAA	57.234	25.926	0.00	0.00	0.00	3.02
2261	2512	9.765795	TTTTCCTTGTTTTGAGTTTTACAGAAA	57.234	25.926	0.00	0.00	0.00	2.52
2262	2513	9.765795	TTTCCTTGTTTTGAGTTTTACAGAAAA	57.234	25.926	0.00	0.00	32.00	2.29
2263	2514	8.980143	TCCTTGTTTTGAGTTTTACAGAAAAG	57.020	30.769	0.00	0.00	35.21	2.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
75	76	3.610040	TGAGACGCACCTCAAATACAT	57.390	42.857	2.87	0.00	39.96	2.29
159	161	2.579657	TTTCTCGCCTTCTCCGCCA	61.580	57.895	0.00	0.00	0.00	5.69
165	167	4.207891	ACATGTATGTTTCTCGCCTTCT	57.792	40.909	0.00	0.00	37.90	2.85
275	277	2.290323	GGTACTCAGGCCACTGTGATTT	60.290	50.000	9.86	0.00	45.14	2.17
310	312	0.906756	TCAGGAGAGGGTCTGGCTTG	60.907	60.000	0.00	0.00	0.00	4.01
393	395	5.933463	CCAAATTGTTTCATGCCAGTGTAAT	59.067	36.000	0.00	0.00	0.00	1.89
394	396	5.163364	ACCAAATTGTTTCATGCCAGTGTAA	60.163	36.000	0.00	0.00	0.00	2.41
429	431	1.222936	GTGTCAGGAGCCTCCATGG	59.777	63.158	14.46	4.97	39.61	3.66
539	542	5.069251	CCTCCACGACTTGTATTTCCTCTAT	59.931	44.000	0.00	0.00	0.00	1.98
549	552	1.116536	TGCCACCTCCACGACTTGTA	61.117	55.000	0.00	0.00	0.00	2.41
639	645	2.772691	GCTCCCTCTACGACCACCG	61.773	68.421	0.00	0.00	45.44	4.94
683	725	2.327325	AGCACTTGTCCTCCCTCTAA	57.673	50.000	0.00	0.00	0.00	2.10
693	735	2.289694	ACCACCACATCTAGCACTTGTC	60.290	50.000	0.00	0.00	0.00	3.18
706	754	1.764571	GCTCTACCACCACCACCACA	61.765	60.000	0.00	0.00	0.00	4.17
994	1072	1.069765	CGGACGAAGCCATGCCTAT	59.930	57.895	0.00	0.00	0.00	2.57
1008	1086	2.572284	CTCGTCCTGGAACCGGAC	59.428	66.667	9.46	17.95	45.88	4.79
1152	1230	2.811431	CCATGACTTTTTGCGGTCAGTA	59.189	45.455	0.00	0.00	44.13	2.74
1164	1242	5.280215	CCTTCTACCTTCTGTCCATGACTTT	60.280	44.000	0.00	0.00	33.15	2.66
1219	1297	1.666553	CGTTAGTTGGCCGAGCACA	60.667	57.895	0.00	0.00	0.00	4.57
1484	1565	0.664466	CGCTTCTTGTGCTCACGAGA	60.664	55.000	14.29	14.29	47.00	4.04
1494	1575	1.964223	TCTCTTCCTCACGCTTCTTGT	59.036	47.619	0.00	0.00	0.00	3.16
1565	1646	4.393155	TGCATCGCGAGCCCTTGT	62.393	61.111	16.66	0.00	0.00	3.16
1603	1684	1.352687	GGCCTCTTTCCCTTCTTGTCT	59.647	52.381	0.00	0.00	0.00	3.41
1619	1700	0.921896	TACTGAGTAGTACGGGGCCT	59.078	55.000	0.84	0.00	38.36	5.19
1764	1940	8.771920	TGACACAAATAGTCTCGAATTACAAT	57.228	30.769	0.00	0.00	36.94	2.71
1780	1988	7.604549	TGCACATAATCTCAAATGACACAAAT	58.395	30.769	0.00	0.00	0.00	2.32
1781	1989	6.979465	TGCACATAATCTCAAATGACACAAA	58.021	32.000	0.00	0.00	0.00	2.83
1782	1990	6.572167	TGCACATAATCTCAAATGACACAA	57.428	33.333	0.00	0.00	0.00	3.33
1783	1991	6.572167	TTGCACATAATCTCAAATGACACA	57.428	33.333	0.00	0.00	0.00	3.72
1784	1992	7.086376	AGTTTGCACATAATCTCAAATGACAC	58.914	34.615	0.00	0.00	32.07	3.67
1785	1993	7.218228	AGTTTGCACATAATCTCAAATGACA	57.782	32.000	0.00	0.00	32.07	3.58
1786	1994	9.229784	CATAGTTTGCACATAATCTCAAATGAC	57.770	33.333	0.00	0.00	32.07	3.06
1787	1995	8.959548	ACATAGTTTGCACATAATCTCAAATGA	58.040	29.630	0.00	0.00	32.07	2.57
1788	1996	9.577110	AACATAGTTTGCACATAATCTCAAATG	57.423	29.630	0.00	0.00	32.07	2.32
1822	2051	9.890629	AAATATGAACAAAGCATACTAGTCTCA	57.109	29.630	0.00	0.00	31.61	3.27
1898	2127	4.981806	ACTTGTTGCACACACTGTTAAT	57.018	36.364	0.00	0.00	33.98	1.40
2085	2336	1.641577	GTTGGAGACGTATCAGTGCC	58.358	55.000	12.92	0.00	0.00	5.01
2086	2337	1.269166	CGTTGGAGACGTATCAGTGC	58.731	55.000	12.92	0.00	46.49	4.40
2184	2435	9.197306	GGTTAATAGGTTAGTCCCAAAAATCAT	57.803	33.333	0.00	0.00	36.75	2.45
2185	2436	8.395605	AGGTTAATAGGTTAGTCCCAAAAATCA	58.604	33.333	0.00	0.00	36.75	2.57
2186	2437	8.818622	AGGTTAATAGGTTAGTCCCAAAAATC	57.181	34.615	0.00	0.00	36.75	2.17
2187	2438	9.916360	CTAGGTTAATAGGTTAGTCCCAAAAAT	57.084	33.333	0.00	0.00	36.75	1.82
2188	2439	9.114938	TCTAGGTTAATAGGTTAGTCCCAAAAA	57.885	33.333	0.00	0.00	36.75	1.94
2189	2440	8.683776	TCTAGGTTAATAGGTTAGTCCCAAAA	57.316	34.615	0.00	0.00	36.75	2.44
2190	2441	7.147602	GCTCTAGGTTAATAGGTTAGTCCCAAA	60.148	40.741	0.00	0.00	36.75	3.28
2191	2442	6.325804	GCTCTAGGTTAATAGGTTAGTCCCAA	59.674	42.308	0.00	0.00	36.75	4.12
2192	2443	5.837438	GCTCTAGGTTAATAGGTTAGTCCCA	59.163	44.000	0.00	0.00	36.75	4.37
2193	2444	5.245751	GGCTCTAGGTTAATAGGTTAGTCCC	59.754	48.000	0.00	0.00	36.75	4.46
2194	2445	5.245751	GGGCTCTAGGTTAATAGGTTAGTCC	59.754	48.000	0.00	0.00	0.00	3.85
2195	2446	5.837438	TGGGCTCTAGGTTAATAGGTTAGTC	59.163	44.000	0.00	0.00	0.00	2.59
2196	2447	5.785123	TGGGCTCTAGGTTAATAGGTTAGT	58.215	41.667	0.00	0.00	0.00	2.24
2197	2448	5.839606	ACTGGGCTCTAGGTTAATAGGTTAG	59.160	44.000	0.00	0.00	0.00	2.34
2198	2449	5.601313	CACTGGGCTCTAGGTTAATAGGTTA	59.399	44.000	0.00	0.00	0.00	2.85
2199	2450	4.409247	CACTGGGCTCTAGGTTAATAGGTT	59.591	45.833	0.00	0.00	0.00	3.50
2200	2451	3.967987	CACTGGGCTCTAGGTTAATAGGT	59.032	47.826	0.00	0.00	0.00	3.08
2201	2452	3.244249	GCACTGGGCTCTAGGTTAATAGG	60.244	52.174	0.00	0.00	40.25	2.57
2202	2453	3.244249	GGCACTGGGCTCTAGGTTAATAG	60.244	52.174	0.21	0.00	44.01	1.73
2203	2454	2.704065	GGCACTGGGCTCTAGGTTAATA	59.296	50.000	0.21	0.00	44.01	0.98
2204	2455	1.490910	GGCACTGGGCTCTAGGTTAAT	59.509	52.381	0.21	0.00	44.01	1.40
2205	2456	0.909623	GGCACTGGGCTCTAGGTTAA	59.090	55.000	0.21	0.00	44.01	2.01
2206	2457	0.252513	TGGCACTGGGCTCTAGGTTA	60.253	55.000	0.21	0.00	44.01	2.85
2207	2458	1.538876	TGGCACTGGGCTCTAGGTT	60.539	57.895	0.21	0.00	44.01	3.50
2208	2459	1.992277	CTGGCACTGGGCTCTAGGT	60.992	63.158	0.21	0.00	44.01	3.08
2209	2460	1.557269	AACTGGCACTGGGCTCTAGG	61.557	60.000	0.21	0.00	44.01	3.02
2210	2461	0.326264	AAACTGGCACTGGGCTCTAG	59.674	55.000	0.21	0.73	44.01	2.43
2211	2462	0.324943	GAAACTGGCACTGGGCTCTA	59.675	55.000	0.21	0.00	44.01	2.43
2212	2463	1.073897	GAAACTGGCACTGGGCTCT	59.926	57.895	0.21	0.00	44.01	4.09
2213	2464	1.073897	AGAAACTGGCACTGGGCTC	59.926	57.895	0.21	0.00	44.01	4.70
2214	2465	1.228367	CAGAAACTGGCACTGGGCT	60.228	57.895	0.21	0.00	44.01	5.19
2215	2466	1.109323	AACAGAAACTGGCACTGGGC	61.109	55.000	7.62	0.00	43.74	5.36
2216	2467	1.402787	AAACAGAAACTGGCACTGGG	58.597	50.000	7.62	0.00	35.51	4.45
2217	2468	3.525268	AAAAACAGAAACTGGCACTGG	57.475	42.857	7.62	0.00	35.51	4.00
2234	2485	9.765795	TTCTGTAAAACTCAAAACAAGGAAAAA	57.234	25.926	0.00	0.00	0.00	1.94
2235	2486	9.765795	TTTCTGTAAAACTCAAAACAAGGAAAA	57.234	25.926	0.00	0.00	0.00	2.29
2236	2487	9.765795	TTTTCTGTAAAACTCAAAACAAGGAAA	57.234	25.926	0.00	0.00	29.59	3.13
2237	2488	9.418045	CTTTTCTGTAAAACTCAAAACAAGGAA	57.582	29.630	0.00	0.00	31.37	3.36
2238	2489	8.980143	CTTTTCTGTAAAACTCAAAACAAGGA	57.020	30.769	0.00	0.00	31.37	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.