Multiple sequence alignment - TraesCS3D01G109100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G109100 chr3D 100.000 3765 0 0 1 3765 62327714 62331478 0.000000e+00 6953.0
1 TraesCS3D01G109100 chr3D 91.441 222 14 2 3470 3686 1941231 1941452 2.200000e-77 300.0
2 TraesCS3D01G109100 chr3D 90.909 220 14 3 3470 3683 511662410 511662629 1.320000e-74 291.0
3 TraesCS3D01G109100 chr3D 90.868 219 15 2 3470 3683 571378934 571378716 4.760000e-74 289.0
4 TraesCS3D01G109100 chr3D 87.838 74 9 0 1984 2057 474216182 474216109 1.860000e-13 87.9
5 TraesCS3D01G109100 chr3A 87.594 3047 165 91 515 3472 71223325 71226247 0.000000e+00 3336.0
6 TraesCS3D01G109100 chr3A 92.387 486 23 5 15 493 71222716 71223194 0.000000e+00 680.0
7 TraesCS3D01G109100 chr3A 87.838 74 9 0 1984 2057 616492596 616492523 1.860000e-13 87.9
8 TraesCS3D01G109100 chr3B 89.312 2208 109 46 1 2158 101310307 101312437 0.000000e+00 2652.0
9 TraesCS3D01G109100 chr3B 91.816 1283 64 13 2187 3442 101312680 101313948 0.000000e+00 1749.0
10 TraesCS3D01G109100 chr3B 86.170 94 13 0 1964 2057 630401473 630401380 6.650000e-18 102.0
11 TraesCS3D01G109100 chr1D 91.705 217 13 2 3470 3681 11499835 11499619 2.840000e-76 296.0
12 TraesCS3D01G109100 chr1D 85.149 202 28 2 1905 2105 308262079 308262279 4.930000e-49 206.0
13 TraesCS3D01G109100 chr7D 91.667 216 13 2 3470 3680 534629941 534630156 1.020000e-75 294.0
14 TraesCS3D01G109100 chr2D 91.284 218 12 3 3470 3682 642959322 642959107 1.320000e-74 291.0
15 TraesCS3D01G109100 chr2A 91.244 217 14 2 3470 3681 689756675 689756891 1.320000e-74 291.0
16 TraesCS3D01G109100 chr6D 90.222 225 17 2 3470 3689 83253536 83253312 4.760000e-74 289.0
17 TraesCS3D01G109100 chr6D 90.541 222 15 3 3470 3685 181695040 181694819 4.760000e-74 289.0
18 TraesCS3D01G109100 chr1B 84.158 202 30 2 1905 2105 417400887 417401087 1.070000e-45 195.0
19 TraesCS3D01G109100 chr1A 84.158 202 30 2 1905 2105 387516188 387516388 1.070000e-45 195.0
20 TraesCS3D01G109100 chr5B 84.138 145 23 0 1961 2105 443698224 443698368 1.410000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G109100 chr3D 62327714 62331478 3764 False 6953.0 6953 100.0000 1 3765 1 chr3D.!!$F2 3764
1 TraesCS3D01G109100 chr3A 71222716 71226247 3531 False 2008.0 3336 89.9905 15 3472 2 chr3A.!!$F1 3457
2 TraesCS3D01G109100 chr3B 101310307 101313948 3641 False 2200.5 2652 90.5640 1 3442 2 chr3B.!!$F1 3441

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 844 0.250770 AAAAAGACACGGAGAGGCCC 60.251 55.0 0.00 0.00 0.0 5.80 F
1154 1307 1.115930 ACAACTCGAGGACCTGCAGT 61.116 55.0 18.41 0.00 0.0 4.40 F
1792 1973 0.543277 TCCATCCCTGCAGCTACTTG 59.457 55.0 8.66 0.91 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1947 0.323178 CTGCAGGGATGGAAGTTGCT 60.323 55.0 5.57 0.0 35.85 3.91 R
2173 2381 0.673644 GCCGTACCATGTCAGCTGTT 60.674 55.0 14.67 0.0 0.00 3.16 R
3497 3991 0.036875 AGCTGAGCCACTACCCAAAC 59.963 55.0 0.00 0.0 0.00 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 4.142337 GGAGTAGGAGTAGAACAAGCAGTC 60.142 50.000 0.00 0.00 0.00 3.51
76 78 1.067495 AGGAGTAGAACAAGCAGTCGC 60.067 52.381 0.00 0.00 38.99 5.19
95 97 1.745653 GCCTGACATTTTCTACCCTGC 59.254 52.381 0.00 0.00 0.00 4.85
236 241 3.071874 TCTTGGCACCTAACCTTGATG 57.928 47.619 0.00 0.00 0.00 3.07
241 246 2.488153 GGCACCTAACCTTGATGACAAC 59.512 50.000 0.00 0.00 32.27 3.32
258 263 2.624838 ACAACTATGCTTGCTTGCTTGT 59.375 40.909 3.47 3.07 0.00 3.16
262 267 5.741388 ACTATGCTTGCTTGCTTGTATAC 57.259 39.130 0.00 0.00 0.00 1.47
316 332 3.691609 GCCAATGTCCTTAGTCCTTGAAG 59.308 47.826 0.00 0.00 0.00 3.02
324 340 4.042809 TCCTTAGTCCTTGAAGCAATGGAA 59.957 41.667 0.00 0.00 0.00 3.53
345 361 6.013206 TGGAAGCCTAACAACCTTGTATTCTA 60.013 38.462 0.00 0.00 41.31 2.10
346 362 6.882678 GGAAGCCTAACAACCTTGTATTCTAA 59.117 38.462 0.00 0.00 41.31 2.10
434 453 6.646653 TGCACTAGAATATAAGATTCCAAGCG 59.353 38.462 0.00 0.00 0.00 4.68
559 691 8.954350 CCATCCATTGATCTGTAGATATTTTCC 58.046 37.037 0.00 0.00 34.37 3.13
676 816 3.004171 CAATCGGTTAACCATGTCGGAA 58.996 45.455 24.14 0.00 38.63 4.30
680 820 2.477189 CGGTTAACCATGTCGGAATTGC 60.477 50.000 24.14 0.00 38.63 3.56
681 821 2.490115 GGTTAACCATGTCGGAATTGCA 59.510 45.455 20.12 0.00 38.63 4.08
682 822 3.427503 GGTTAACCATGTCGGAATTGCAG 60.428 47.826 20.12 0.00 38.63 4.41
683 823 1.176527 AACCATGTCGGAATTGCAGG 58.823 50.000 0.00 0.00 38.63 4.85
703 843 3.324207 AAAAAGACACGGAGAGGCC 57.676 52.632 0.00 0.00 0.00 5.19
704 844 0.250770 AAAAAGACACGGAGAGGCCC 60.251 55.000 0.00 0.00 0.00 5.80
748 888 1.339055 TGAGCCATACAGGAGCAACAC 60.339 52.381 0.00 0.00 41.22 3.32
797 938 3.501445 GCATTATTGGCATCCAGAGACTC 59.499 47.826 0.00 0.00 33.81 3.36
1067 1213 6.128254 GGAATTGTTTCCTTCTTCTACCTTCG 60.128 42.308 0.00 0.00 46.80 3.79
1072 1218 2.490903 TCCTTCTTCTACCTTCGTTCGG 59.509 50.000 0.00 0.00 0.00 4.30
1084 1237 2.853914 GTTCGGTCGAGCTTGTGC 59.146 61.111 13.48 0.00 40.05 4.57
1154 1307 1.115930 ACAACTCGAGGACCTGCAGT 61.116 55.000 18.41 0.00 0.00 4.40
1199 1355 2.360475 GGTGGGCTGAGGCTGTTC 60.360 66.667 5.84 0.00 38.73 3.18
1265 1421 1.293179 CATGGAGTGCCTGTCGTCA 59.707 57.895 0.00 0.00 34.31 4.35
1459 1615 4.038282 AGGTGAGTTCGTGTGTGTATGTAA 59.962 41.667 0.00 0.00 0.00 2.41
1460 1616 4.149396 GGTGAGTTCGTGTGTGTATGTAAC 59.851 45.833 0.00 0.00 0.00 2.50
1461 1617 4.980434 GTGAGTTCGTGTGTGTATGTAACT 59.020 41.667 0.00 0.00 0.00 2.24
1462 1618 6.144854 GTGAGTTCGTGTGTGTATGTAACTA 58.855 40.000 0.00 0.00 0.00 2.24
1463 1619 6.087291 GTGAGTTCGTGTGTGTATGTAACTAC 59.913 42.308 0.00 0.00 0.00 2.73
1471 1627 7.471721 GTGTGTGTATGTAACTACGTATACCA 58.528 38.462 11.32 7.67 38.34 3.25
1505 1662 2.600470 ACAGTTCGTTGGTTCGGTAA 57.400 45.000 0.00 0.00 0.00 2.85
1561 1731 7.180051 AGGATCTGGGAGATTATAATCTGTGAC 59.820 40.741 28.58 15.68 45.39 3.67
1588 1758 7.415592 TCATCATGATATCTATGGTCTCACC 57.584 40.000 8.15 0.00 39.22 4.02
1677 1847 3.261897 TGAGTGTTTGGATCCTCTTCTCC 59.738 47.826 14.23 0.00 0.00 3.71
1693 1863 4.041567 TCTTCTCCAATTAGTTGCTGTCCA 59.958 41.667 0.00 0.00 33.90 4.02
1715 1885 4.305989 TCAATTTGTCAGCCAACTTGAC 57.694 40.909 4.39 0.60 43.62 3.18
1766 1947 1.122632 TCAGACCGGGGTTGCAACTA 61.123 55.000 27.64 0.00 0.00 2.24
1792 1973 0.543277 TCCATCCCTGCAGCTACTTG 59.457 55.000 8.66 0.91 0.00 3.16
1809 1990 7.335422 CAGCTACTTGGTCATTTATTTCAGAGT 59.665 37.037 0.00 0.00 0.00 3.24
1811 1992 8.821894 GCTACTTGGTCATTTATTTCAGAGTAG 58.178 37.037 0.00 0.00 37.17 2.57
1814 1995 9.654663 ACTTGGTCATTTATTTCAGAGTAGTAC 57.345 33.333 0.00 0.00 0.00 2.73
1828 2030 8.223177 TCAGAGTAGTACTAGAATTAAGTGCC 57.777 38.462 1.87 0.00 30.71 5.01
1829 2031 7.832685 TCAGAGTAGTACTAGAATTAAGTGCCA 59.167 37.037 1.87 0.00 30.71 4.92
1830 2032 8.634444 CAGAGTAGTACTAGAATTAAGTGCCAT 58.366 37.037 1.87 0.00 30.71 4.40
1831 2033 8.634444 AGAGTAGTACTAGAATTAAGTGCCATG 58.366 37.037 1.87 0.00 30.71 3.66
1832 2034 8.307582 AGTAGTACTAGAATTAAGTGCCATGT 57.692 34.615 1.87 0.00 30.71 3.21
1833 2035 8.759782 AGTAGTACTAGAATTAAGTGCCATGTT 58.240 33.333 1.87 0.00 30.71 2.71
1834 2036 9.379791 GTAGTACTAGAATTAAGTGCCATGTTT 57.620 33.333 1.87 0.00 30.71 2.83
1835 2037 8.863872 AGTACTAGAATTAAGTGCCATGTTTT 57.136 30.769 0.00 0.00 30.71 2.43
1836 2038 9.297037 AGTACTAGAATTAAGTGCCATGTTTTT 57.703 29.630 0.00 0.00 30.71 1.94
1837 2039 9.556030 GTACTAGAATTAAGTGCCATGTTTTTC 57.444 33.333 0.00 0.00 0.00 2.29
1838 2040 8.177119 ACTAGAATTAAGTGCCATGTTTTTCA 57.823 30.769 0.00 0.00 0.00 2.69
1839 2041 8.082242 ACTAGAATTAAGTGCCATGTTTTTCAC 58.918 33.333 0.00 0.00 0.00 3.18
1840 2042 6.223120 AGAATTAAGTGCCATGTTTTTCACC 58.777 36.000 0.00 0.00 0.00 4.02
1841 2043 5.806654 ATTAAGTGCCATGTTTTTCACCT 57.193 34.783 0.00 0.00 0.00 4.00
1842 2044 5.606348 TTAAGTGCCATGTTTTTCACCTT 57.394 34.783 0.00 0.00 0.00 3.50
1843 2045 6.716934 TTAAGTGCCATGTTTTTCACCTTA 57.283 33.333 0.00 0.00 0.00 2.69
1844 2046 5.606348 AAGTGCCATGTTTTTCACCTTAA 57.394 34.783 0.00 0.00 0.00 1.85
1845 2047 5.806654 AGTGCCATGTTTTTCACCTTAAT 57.193 34.783 0.00 0.00 0.00 1.40
1846 2048 6.909550 AGTGCCATGTTTTTCACCTTAATA 57.090 33.333 0.00 0.00 0.00 0.98
1847 2049 7.296628 AGTGCCATGTTTTTCACCTTAATAA 57.703 32.000 0.00 0.00 0.00 1.40
1876 2083 9.911788 AAGATGTCAAATTAGGTTCATATCACT 57.088 29.630 0.00 0.00 0.00 3.41
1908 2115 1.204941 GTAAGTGGATCGTGAGCAGGT 59.795 52.381 0.00 0.00 0.00 4.00
2161 2369 3.482722 GCACTTGCACGTAGTAGTAGA 57.517 47.619 0.00 0.00 41.61 2.59
2162 2370 3.829948 GCACTTGCACGTAGTAGTAGAA 58.170 45.455 0.00 0.00 41.61 2.10
2163 2371 3.852536 GCACTTGCACGTAGTAGTAGAAG 59.147 47.826 0.00 0.00 41.61 2.85
2164 2372 4.615452 GCACTTGCACGTAGTAGTAGAAGT 60.615 45.833 0.00 0.00 41.61 3.01
2165 2373 5.391310 GCACTTGCACGTAGTAGTAGAAGTA 60.391 44.000 0.00 0.00 41.61 2.24
2166 2374 6.605849 CACTTGCACGTAGTAGTAGAAGTAA 58.394 40.000 0.00 0.00 41.61 2.24
2221 2649 2.154854 TGTTTGCTTCAGGTCGAGAG 57.845 50.000 0.00 0.00 0.00 3.20
2272 2700 0.606401 CACAGGCTGAAACCCGATGT 60.606 55.000 23.66 0.00 0.00 3.06
2282 2710 1.194781 AACCCGATGTCACCAGCTCT 61.195 55.000 0.00 0.00 0.00 4.09
2285 2713 0.817654 CCGATGTCACCAGCTCTGTA 59.182 55.000 0.00 0.00 0.00 2.74
2445 2888 3.260100 CTTCCCTGGGCCTGGTGT 61.260 66.667 25.76 0.00 0.00 4.16
2448 2891 4.351054 CCCTGGGCCTGGTGTCAC 62.351 72.222 25.76 0.00 0.00 3.67
2453 2896 2.282391 GGCCTGGTGTCACATGCA 60.282 61.111 5.12 0.00 34.26 3.96
2486 2929 3.461773 GCGCCTGACCTGGAGCTA 61.462 66.667 12.80 0.00 46.93 3.32
2597 3052 1.618837 ACCTAGAGCGAGCAAAAGACA 59.381 47.619 0.00 0.00 0.00 3.41
2738 3201 3.886694 TGCGTGTGTTGCTGGCAC 61.887 61.111 0.00 0.00 37.37 5.01
2860 3323 1.095807 GGAACGGGCCTCATTAGCAC 61.096 60.000 0.84 0.00 0.00 4.40
2918 3381 0.109272 TGGTCTTTGTCTCTAGCGCG 60.109 55.000 0.00 0.00 0.00 6.86
2922 3385 3.982372 TTTGTCTCTAGCGCGCCGG 62.982 63.158 30.33 20.90 0.00 6.13
2994 3469 3.047280 GACGCGTGGCCAATCACA 61.047 61.111 20.70 0.00 37.50 3.58
3065 3546 3.239449 TGATGATATGGTTCGGTAGCCT 58.761 45.455 0.00 0.00 0.00 4.58
3079 3560 3.621461 CGGTAGCCTTGGTGGACTAAAAT 60.621 47.826 0.00 0.00 38.35 1.82
3108 3589 2.839043 TAATTCACCCGCACCGGTCG 62.839 60.000 2.59 11.98 46.80 4.79
3165 3646 2.491152 CCGATGTGCACCAATGGC 59.509 61.111 15.69 0.00 0.00 4.40
3354 3845 1.268079 TCGATCTGCTCTATCTTGGCG 59.732 52.381 0.00 0.00 0.00 5.69
3372 3863 2.430921 GTCTCGTCAGGTGGCACG 60.431 66.667 12.17 0.00 37.36 5.34
3443 3937 0.463654 TCGCGCCATTAGCAAGGAAT 60.464 50.000 0.00 0.00 44.04 3.01
3445 3939 1.843992 GCGCCATTAGCAAGGAATTG 58.156 50.000 0.00 0.00 44.04 2.32
3449 3943 3.316029 CGCCATTAGCAAGGAATTGATCA 59.684 43.478 0.00 0.00 44.04 2.92
3450 3944 4.022589 CGCCATTAGCAAGGAATTGATCAT 60.023 41.667 0.00 0.00 44.04 2.45
3451 3945 5.467705 GCCATTAGCAAGGAATTGATCATC 58.532 41.667 0.00 0.00 42.97 2.92
3452 3946 5.243283 GCCATTAGCAAGGAATTGATCATCT 59.757 40.000 0.00 0.00 42.97 2.90
3457 3951 3.144506 CAAGGAATTGATCATCTCGGGG 58.855 50.000 0.00 0.00 0.00 5.73
3463 3957 5.339530 GGAATTGATCATCTCGGGGGATAAT 60.340 44.000 0.00 0.00 0.00 1.28
3464 3958 5.786121 ATTGATCATCTCGGGGGATAATT 57.214 39.130 0.00 0.00 0.00 1.40
3467 3961 6.696042 TGATCATCTCGGGGGATAATTAAA 57.304 37.500 0.00 0.00 0.00 1.52
3468 3962 7.085476 TGATCATCTCGGGGGATAATTAAAA 57.915 36.000 0.00 0.00 0.00 1.52
3469 3963 7.168219 TGATCATCTCGGGGGATAATTAAAAG 58.832 38.462 0.00 0.00 0.00 2.27
3470 3964 5.876357 TCATCTCGGGGGATAATTAAAAGG 58.124 41.667 0.00 0.00 0.00 3.11
3471 3965 4.094830 TCTCGGGGGATAATTAAAAGGC 57.905 45.455 0.00 0.00 0.00 4.35
3472 3966 3.720002 TCTCGGGGGATAATTAAAAGGCT 59.280 43.478 0.00 0.00 0.00 4.58
3473 3967 4.167307 TCTCGGGGGATAATTAAAAGGCTT 59.833 41.667 0.00 0.00 0.00 4.35
3474 3968 4.874199 TCGGGGGATAATTAAAAGGCTTT 58.126 39.130 6.68 6.68 0.00 3.51
3475 3969 5.274015 TCGGGGGATAATTAAAAGGCTTTT 58.726 37.500 26.65 26.65 36.67 2.27
3476 3970 5.128008 TCGGGGGATAATTAAAAGGCTTTTG 59.872 40.000 30.27 12.38 34.19 2.44
3477 3971 5.128008 CGGGGGATAATTAAAAGGCTTTTGA 59.872 40.000 30.27 24.29 34.19 2.69
3478 3972 6.183360 CGGGGGATAATTAAAAGGCTTTTGAT 60.183 38.462 30.27 25.30 34.19 2.57
3479 3973 6.992123 GGGGGATAATTAAAAGGCTTTTGATG 59.008 38.462 30.27 0.00 34.19 3.07
3480 3974 7.365563 GGGGGATAATTAAAAGGCTTTTGATGT 60.366 37.037 30.27 20.39 34.19 3.06
3481 3975 8.046708 GGGGATAATTAAAAGGCTTTTGATGTT 58.953 33.333 30.27 19.32 34.19 2.71
3487 3981 9.845740 AATTAAAAGGCTTTTGATGTTAGGTTT 57.154 25.926 30.27 11.48 34.19 3.27
3489 3983 9.974980 TTAAAAGGCTTTTGATGTTAGGTTTAG 57.025 29.630 30.27 0.00 34.19 1.85
3490 3984 7.833285 AAAGGCTTTTGATGTTAGGTTTAGA 57.167 32.000 6.68 0.00 0.00 2.10
3491 3985 8.422577 AAAGGCTTTTGATGTTAGGTTTAGAT 57.577 30.769 6.68 0.00 0.00 1.98
3492 3986 7.396540 AGGCTTTTGATGTTAGGTTTAGATG 57.603 36.000 0.00 0.00 0.00 2.90
3493 3987 6.378280 AGGCTTTTGATGTTAGGTTTAGATGG 59.622 38.462 0.00 0.00 0.00 3.51
3494 3988 6.377146 GGCTTTTGATGTTAGGTTTAGATGGA 59.623 38.462 0.00 0.00 0.00 3.41
3495 3989 7.068716 GGCTTTTGATGTTAGGTTTAGATGGAT 59.931 37.037 0.00 0.00 0.00 3.41
3496 3990 7.917505 GCTTTTGATGTTAGGTTTAGATGGATG 59.082 37.037 0.00 0.00 0.00 3.51
3497 3991 7.880160 TTTGATGTTAGGTTTAGATGGATGG 57.120 36.000 0.00 0.00 0.00 3.51
3498 3992 6.575244 TGATGTTAGGTTTAGATGGATGGT 57.425 37.500 0.00 0.00 0.00 3.55
3499 3993 6.969043 TGATGTTAGGTTTAGATGGATGGTT 58.031 36.000 0.00 0.00 0.00 3.67
3500 3994 7.410174 TGATGTTAGGTTTAGATGGATGGTTT 58.590 34.615 0.00 0.00 0.00 3.27
3501 3995 7.339212 TGATGTTAGGTTTAGATGGATGGTTTG 59.661 37.037 0.00 0.00 0.00 2.93
3502 3996 5.949354 TGTTAGGTTTAGATGGATGGTTTGG 59.051 40.000 0.00 0.00 0.00 3.28
3503 3997 3.981212 AGGTTTAGATGGATGGTTTGGG 58.019 45.455 0.00 0.00 0.00 4.12
3504 3998 3.336694 AGGTTTAGATGGATGGTTTGGGT 59.663 43.478 0.00 0.00 0.00 4.51
3505 3999 4.542525 AGGTTTAGATGGATGGTTTGGGTA 59.457 41.667 0.00 0.00 0.00 3.69
3506 4000 4.887655 GGTTTAGATGGATGGTTTGGGTAG 59.112 45.833 0.00 0.00 0.00 3.18
3507 4001 5.506708 GTTTAGATGGATGGTTTGGGTAGT 58.493 41.667 0.00 0.00 0.00 2.73
3508 4002 3.652057 AGATGGATGGTTTGGGTAGTG 57.348 47.619 0.00 0.00 0.00 2.74
3509 4003 2.242196 AGATGGATGGTTTGGGTAGTGG 59.758 50.000 0.00 0.00 0.00 4.00
3510 4004 0.039035 TGGATGGTTTGGGTAGTGGC 59.961 55.000 0.00 0.00 0.00 5.01
3511 4005 0.331616 GGATGGTTTGGGTAGTGGCT 59.668 55.000 0.00 0.00 0.00 4.75
3512 4006 1.682087 GGATGGTTTGGGTAGTGGCTC 60.682 57.143 0.00 0.00 0.00 4.70
3513 4007 1.004277 GATGGTTTGGGTAGTGGCTCA 59.996 52.381 0.00 0.00 0.00 4.26
3514 4008 0.400213 TGGTTTGGGTAGTGGCTCAG 59.600 55.000 0.00 0.00 0.00 3.35
3515 4009 0.960861 GGTTTGGGTAGTGGCTCAGC 60.961 60.000 0.00 0.00 0.00 4.26
3516 4010 0.036875 GTTTGGGTAGTGGCTCAGCT 59.963 55.000 0.00 0.00 0.00 4.24
3517 4011 1.278127 GTTTGGGTAGTGGCTCAGCTA 59.722 52.381 0.00 0.00 0.00 3.32
3518 4012 1.195115 TTGGGTAGTGGCTCAGCTAG 58.805 55.000 0.00 0.00 0.00 3.42
3531 4025 4.613925 CTCAGCTAGCATCCCTTAATCA 57.386 45.455 18.83 0.00 0.00 2.57
3532 4026 5.163281 CTCAGCTAGCATCCCTTAATCAT 57.837 43.478 18.83 0.00 0.00 2.45
3533 4027 6.291648 CTCAGCTAGCATCCCTTAATCATA 57.708 41.667 18.83 0.00 0.00 2.15
3534 4028 6.881067 TCAGCTAGCATCCCTTAATCATAT 57.119 37.500 18.83 0.00 0.00 1.78
3535 4029 7.262990 TCAGCTAGCATCCCTTAATCATATT 57.737 36.000 18.83 0.00 0.00 1.28
3536 4030 7.108194 TCAGCTAGCATCCCTTAATCATATTG 58.892 38.462 18.83 0.00 0.00 1.90
3537 4031 6.318144 CAGCTAGCATCCCTTAATCATATTGG 59.682 42.308 18.83 0.00 0.00 3.16
3538 4032 6.216251 AGCTAGCATCCCTTAATCATATTGGA 59.784 38.462 18.83 0.00 0.00 3.53
3539 4033 7.059156 GCTAGCATCCCTTAATCATATTGGAT 58.941 38.462 10.63 0.00 32.95 3.41
3540 4034 8.213679 GCTAGCATCCCTTAATCATATTGGATA 58.786 37.037 10.63 0.00 31.59 2.59
3541 4035 9.775854 CTAGCATCCCTTAATCATATTGGATAG 57.224 37.037 0.00 0.00 31.59 2.08
3542 4036 7.580910 AGCATCCCTTAATCATATTGGATAGG 58.419 38.462 0.00 0.00 31.59 2.57
3543 4037 7.407033 AGCATCCCTTAATCATATTGGATAGGA 59.593 37.037 0.00 0.00 31.59 2.94
3544 4038 7.718753 GCATCCCTTAATCATATTGGATAGGAG 59.281 40.741 0.00 0.00 31.59 3.69
3545 4039 8.776119 CATCCCTTAATCATATTGGATAGGAGT 58.224 37.037 0.00 0.00 31.59 3.85
3547 4041 9.494055 TCCCTTAATCATATTGGATAGGAGTAG 57.506 37.037 0.00 0.00 29.65 2.57
3548 4042 8.207545 CCCTTAATCATATTGGATAGGAGTAGC 58.792 40.741 0.00 0.00 29.65 3.58
3549 4043 7.923344 CCTTAATCATATTGGATAGGAGTAGCG 59.077 40.741 0.00 0.00 29.65 4.26
3550 4044 5.860941 ATCATATTGGATAGGAGTAGCGG 57.139 43.478 0.00 0.00 0.00 5.52
3551 4045 3.447586 TCATATTGGATAGGAGTAGCGGC 59.552 47.826 0.00 0.00 0.00 6.53
3552 4046 1.717032 ATTGGATAGGAGTAGCGGCA 58.283 50.000 1.45 0.00 0.00 5.69
3553 4047 1.717032 TTGGATAGGAGTAGCGGCAT 58.283 50.000 1.45 0.00 0.00 4.40
3554 4048 2.597578 TGGATAGGAGTAGCGGCATA 57.402 50.000 1.45 0.00 0.00 3.14
3555 4049 3.101643 TGGATAGGAGTAGCGGCATAT 57.898 47.619 1.45 0.00 0.00 1.78
3556 4050 2.760650 TGGATAGGAGTAGCGGCATATG 59.239 50.000 1.45 0.00 0.00 1.78
3557 4051 2.761208 GGATAGGAGTAGCGGCATATGT 59.239 50.000 1.45 0.00 0.00 2.29
3558 4052 3.195825 GGATAGGAGTAGCGGCATATGTT 59.804 47.826 1.45 0.00 0.00 2.71
3559 4053 2.533266 AGGAGTAGCGGCATATGTTG 57.467 50.000 1.45 0.00 0.00 3.33
3571 4065 3.909430 GCATATGTTGCCAAGATGATGG 58.091 45.455 4.29 0.00 46.15 3.51
3572 4066 3.570975 GCATATGTTGCCAAGATGATGGA 59.429 43.478 4.29 0.00 46.15 3.41
3573 4067 4.219944 GCATATGTTGCCAAGATGATGGAT 59.780 41.667 4.29 0.00 46.15 3.41
3574 4068 5.279306 GCATATGTTGCCAAGATGATGGATT 60.279 40.000 4.29 0.00 46.15 3.01
3575 4069 6.740401 GCATATGTTGCCAAGATGATGGATTT 60.740 38.462 4.29 0.00 46.15 2.17
3576 4070 7.524202 GCATATGTTGCCAAGATGATGGATTTA 60.524 37.037 4.29 0.00 46.15 1.40
3577 4071 5.840243 TGTTGCCAAGATGATGGATTTAG 57.160 39.130 0.00 0.00 43.54 1.85
3578 4072 4.646040 TGTTGCCAAGATGATGGATTTAGG 59.354 41.667 0.00 0.00 43.54 2.69
3579 4073 3.225104 TGCCAAGATGATGGATTTAGGC 58.775 45.455 0.00 0.00 43.54 3.93
3580 4074 3.225104 GCCAAGATGATGGATTTAGGCA 58.775 45.455 0.00 0.00 43.54 4.75
3581 4075 3.830755 GCCAAGATGATGGATTTAGGCAT 59.169 43.478 0.00 0.00 43.54 4.40
3582 4076 5.012239 GCCAAGATGATGGATTTAGGCATA 58.988 41.667 0.00 0.00 43.54 3.14
3583 4077 5.655532 GCCAAGATGATGGATTTAGGCATAT 59.344 40.000 0.00 0.00 43.54 1.78
3584 4078 6.154021 GCCAAGATGATGGATTTAGGCATATT 59.846 38.462 0.00 0.00 43.54 1.28
3585 4079 7.340232 GCCAAGATGATGGATTTAGGCATATTA 59.660 37.037 0.00 0.00 43.54 0.98
3586 4080 9.417561 CCAAGATGATGGATTTAGGCATATTAT 57.582 33.333 0.00 0.00 43.54 1.28
3589 4083 9.986157 AGATGATGGATTTAGGCATATTATTGT 57.014 29.630 0.00 0.00 0.00 2.71
3612 4106 8.969260 TGTAATACTTTATACTGTCCTCGAGA 57.031 34.615 15.71 0.00 0.00 4.04
3613 4107 9.399797 TGTAATACTTTATACTGTCCTCGAGAA 57.600 33.333 15.71 0.00 0.00 2.87
3619 4113 9.132923 ACTTTATACTGTCCTCGAGAATAATCA 57.867 33.333 15.71 2.87 0.00 2.57
3620 4114 9.967346 CTTTATACTGTCCTCGAGAATAATCAA 57.033 33.333 15.71 0.00 0.00 2.57
3625 4119 8.879342 ACTGTCCTCGAGAATAATCAATAAAG 57.121 34.615 15.71 0.00 0.00 1.85
3626 4120 8.478877 ACTGTCCTCGAGAATAATCAATAAAGT 58.521 33.333 15.71 0.00 0.00 2.66
3627 4121 8.648557 TGTCCTCGAGAATAATCAATAAAGTG 57.351 34.615 15.71 0.00 0.00 3.16
3628 4122 7.710907 TGTCCTCGAGAATAATCAATAAAGTGG 59.289 37.037 15.71 0.00 0.00 4.00
3629 4123 6.706270 TCCTCGAGAATAATCAATAAAGTGGC 59.294 38.462 15.71 0.00 0.00 5.01
3630 4124 6.073003 CCTCGAGAATAATCAATAAAGTGGCC 60.073 42.308 15.71 0.00 0.00 5.36
3631 4125 5.465390 TCGAGAATAATCAATAAAGTGGCCG 59.535 40.000 0.00 0.00 0.00 6.13
3632 4126 5.236478 CGAGAATAATCAATAAAGTGGCCGT 59.764 40.000 0.00 0.00 0.00 5.68
3633 4127 6.422701 CGAGAATAATCAATAAAGTGGCCGTA 59.577 38.462 0.00 0.00 0.00 4.02
3634 4128 7.117812 CGAGAATAATCAATAAAGTGGCCGTAT 59.882 37.037 0.00 0.00 0.00 3.06
3635 4129 8.099364 AGAATAATCAATAAAGTGGCCGTATG 57.901 34.615 0.00 0.00 0.00 2.39
3636 4130 4.568152 AATCAATAAAGTGGCCGTATGC 57.432 40.909 0.00 0.00 40.16 3.14
3637 4131 2.992593 TCAATAAAGTGGCCGTATGCA 58.007 42.857 0.00 0.00 43.89 3.96
3638 4132 3.550820 TCAATAAAGTGGCCGTATGCAT 58.449 40.909 3.79 3.79 43.89 3.96
3639 4133 3.563808 TCAATAAAGTGGCCGTATGCATC 59.436 43.478 0.19 0.00 43.89 3.91
3640 4134 3.492102 ATAAAGTGGCCGTATGCATCT 57.508 42.857 0.19 0.00 43.89 2.90
3641 4135 1.382522 AAAGTGGCCGTATGCATCTG 58.617 50.000 0.19 0.00 43.89 2.90
3642 4136 0.541392 AAGTGGCCGTATGCATCTGA 59.459 50.000 0.19 0.00 43.89 3.27
3643 4137 0.761187 AGTGGCCGTATGCATCTGAT 59.239 50.000 0.19 0.00 43.89 2.90
3644 4138 0.870393 GTGGCCGTATGCATCTGATG 59.130 55.000 13.26 13.26 43.89 3.07
3653 4147 4.044721 CATCTGATGCAGAGGCCG 57.955 61.111 4.47 0.00 44.08 6.13
3654 4148 1.597302 CATCTGATGCAGAGGCCGG 60.597 63.158 4.47 0.00 44.08 6.13
3655 4149 2.815945 ATCTGATGCAGAGGCCGGG 61.816 63.158 2.18 0.00 44.08 5.73
3656 4150 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3662 4156 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
3699 4193 5.841267 AAAAATTAAAGGCAGATGGGGTT 57.159 34.783 0.00 0.00 0.00 4.11
3700 4194 6.943899 AAAAATTAAAGGCAGATGGGGTTA 57.056 33.333 0.00 0.00 0.00 2.85
3701 4195 6.544928 AAAATTAAAGGCAGATGGGGTTAG 57.455 37.500 0.00 0.00 0.00 2.34
3702 4196 5.466127 AATTAAAGGCAGATGGGGTTAGA 57.534 39.130 0.00 0.00 0.00 2.10
3703 4197 5.669798 ATTAAAGGCAGATGGGGTTAGAT 57.330 39.130 0.00 0.00 0.00 1.98
3704 4198 5.466127 TTAAAGGCAGATGGGGTTAGATT 57.534 39.130 0.00 0.00 0.00 2.40
3705 4199 6.584471 TTAAAGGCAGATGGGGTTAGATTA 57.416 37.500 0.00 0.00 0.00 1.75
3706 4200 4.713792 AAGGCAGATGGGGTTAGATTAG 57.286 45.455 0.00 0.00 0.00 1.73
3707 4201 3.941629 AGGCAGATGGGGTTAGATTAGA 58.058 45.455 0.00 0.00 0.00 2.10
3708 4202 3.906846 AGGCAGATGGGGTTAGATTAGAG 59.093 47.826 0.00 0.00 0.00 2.43
3709 4203 3.648545 GGCAGATGGGGTTAGATTAGAGT 59.351 47.826 0.00 0.00 0.00 3.24
3710 4204 4.838986 GGCAGATGGGGTTAGATTAGAGTA 59.161 45.833 0.00 0.00 0.00 2.59
3711 4205 5.307196 GGCAGATGGGGTTAGATTAGAGTAA 59.693 44.000 0.00 0.00 0.00 2.24
3712 4206 6.183361 GGCAGATGGGGTTAGATTAGAGTAAA 60.183 42.308 0.00 0.00 0.00 2.01
3713 4207 6.931840 GCAGATGGGGTTAGATTAGAGTAAAG 59.068 42.308 0.00 0.00 0.00 1.85
3714 4208 7.445945 CAGATGGGGTTAGATTAGAGTAAAGG 58.554 42.308 0.00 0.00 0.00 3.11
3715 4209 5.625568 TGGGGTTAGATTAGAGTAAAGGC 57.374 43.478 0.00 0.00 0.00 4.35
3716 4210 5.034200 TGGGGTTAGATTAGAGTAAAGGCA 58.966 41.667 0.00 0.00 0.00 4.75
3717 4211 5.489637 TGGGGTTAGATTAGAGTAAAGGCAA 59.510 40.000 0.00 0.00 0.00 4.52
3718 4212 6.012333 TGGGGTTAGATTAGAGTAAAGGCAAA 60.012 38.462 0.00 0.00 0.00 3.68
3719 4213 6.542735 GGGGTTAGATTAGAGTAAAGGCAAAG 59.457 42.308 0.00 0.00 0.00 2.77
3720 4214 6.542735 GGGTTAGATTAGAGTAAAGGCAAAGG 59.457 42.308 0.00 0.00 0.00 3.11
3721 4215 7.336396 GGTTAGATTAGAGTAAAGGCAAAGGA 58.664 38.462 0.00 0.00 0.00 3.36
3722 4216 7.993758 GGTTAGATTAGAGTAAAGGCAAAGGAT 59.006 37.037 0.00 0.00 0.00 3.24
3723 4217 8.831550 GTTAGATTAGAGTAAAGGCAAAGGATG 58.168 37.037 0.00 0.00 0.00 3.51
3724 4218 7.200434 AGATTAGAGTAAAGGCAAAGGATGA 57.800 36.000 0.00 0.00 0.00 2.92
3725 4219 7.278875 AGATTAGAGTAAAGGCAAAGGATGAG 58.721 38.462 0.00 0.00 0.00 2.90
3726 4220 6.620877 TTAGAGTAAAGGCAAAGGATGAGA 57.379 37.500 0.00 0.00 0.00 3.27
3727 4221 5.707066 AGAGTAAAGGCAAAGGATGAGAT 57.293 39.130 0.00 0.00 0.00 2.75
3728 4222 5.435291 AGAGTAAAGGCAAAGGATGAGATG 58.565 41.667 0.00 0.00 0.00 2.90
3729 4223 3.950395 AGTAAAGGCAAAGGATGAGATGC 59.050 43.478 0.00 0.00 38.06 3.91
3730 4224 1.386533 AAGGCAAAGGATGAGATGCG 58.613 50.000 0.00 0.00 39.66 4.73
3731 4225 1.099879 AGGCAAAGGATGAGATGCGC 61.100 55.000 0.00 0.00 39.66 6.09
3732 4226 1.358046 GCAAAGGATGAGATGCGCC 59.642 57.895 4.18 0.00 0.00 6.53
3733 4227 2.028130 CAAAGGATGAGATGCGCCC 58.972 57.895 4.18 0.00 0.00 6.13
3734 4228 1.152881 AAAGGATGAGATGCGCCCC 60.153 57.895 4.18 0.00 0.00 5.80
3735 4229 2.631012 AAAGGATGAGATGCGCCCCC 62.631 60.000 4.18 0.00 0.00 5.40
3761 4255 7.654568 CAGCACATGATGGATTATTGTTATGT 58.345 34.615 0.00 0.00 0.00 2.29
3762 4256 8.139350 CAGCACATGATGGATTATTGTTATGTT 58.861 33.333 0.00 0.00 0.00 2.71
3763 4257 9.353431 AGCACATGATGGATTATTGTTATGTTA 57.647 29.630 0.00 0.00 0.00 2.41
3764 4258 9.616634 GCACATGATGGATTATTGTTATGTTAG 57.383 33.333 0.00 0.00 0.00 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 2.009774 CAGGGTAGAAAATGTCAGGCG 58.990 52.381 0.00 0.00 0.00 5.52
76 78 3.071874 TGCAGGGTAGAAAATGTCAGG 57.928 47.619 0.00 0.00 0.00 3.86
117 119 9.359653 ACAGCCATTAGAAAATATTTGCTAGAT 57.640 29.630 14.34 9.41 30.25 1.98
118 120 8.623903 CACAGCCATTAGAAAATATTTGCTAGA 58.376 33.333 14.34 7.85 30.25 2.43
119 121 7.864379 CCACAGCCATTAGAAAATATTTGCTAG 59.136 37.037 14.34 6.35 30.25 3.42
120 122 7.559533 TCCACAGCCATTAGAAAATATTTGCTA 59.440 33.333 11.34 11.34 0.00 3.49
236 241 3.240069 CAAGCAAGCAAGCATAGTTGTC 58.760 45.455 3.19 0.00 36.85 3.18
241 246 5.739752 TGTATACAAGCAAGCAAGCATAG 57.260 39.130 2.20 0.00 36.85 2.23
258 263 3.454812 GACAGGGAAGAGGCCTTTGTATA 59.545 47.826 6.77 0.00 31.62 1.47
262 267 0.401738 TGACAGGGAAGAGGCCTTTG 59.598 55.000 6.77 1.69 31.62 2.77
316 332 2.171003 AGGTTGTTAGGCTTCCATTGC 58.829 47.619 0.00 0.00 0.00 3.56
324 340 7.038231 ACTCTTAGAATACAAGGTTGTTAGGCT 60.038 37.037 0.00 0.00 42.35 4.58
345 361 5.140454 AGGGCTGTGATTAACAAAACTCTT 58.860 37.500 0.00 0.00 38.67 2.85
346 362 4.729868 AGGGCTGTGATTAACAAAACTCT 58.270 39.130 0.00 0.00 38.67 3.24
434 453 0.524862 TTTCGCTACGTCCCTGAGTC 59.475 55.000 0.00 0.00 0.00 3.36
559 691 1.133253 CGAGCAATGTGAAGTGCCG 59.867 57.895 0.00 0.00 41.88 5.69
627 767 1.834263 CCTGTGCTAGCCTCTTTAGGT 59.166 52.381 13.29 0.00 45.64 3.08
646 786 3.822167 TGGTTAACCGATTGGAAAAGTCC 59.178 43.478 19.65 1.33 41.04 3.85
703 843 1.893801 AGGAATCTTATACCCTCGCGG 59.106 52.381 6.13 0.00 37.81 6.46
704 844 2.557056 TCAGGAATCTTATACCCTCGCG 59.443 50.000 0.00 0.00 0.00 5.87
748 888 2.738139 TCGCCGTCATGCTGTGTG 60.738 61.111 0.00 0.00 0.00 3.82
1030 1173 0.034670 ACAATTCCTCTGGCTCTGGC 60.035 55.000 0.00 0.00 37.82 4.85
1031 1174 2.503895 AACAATTCCTCTGGCTCTGG 57.496 50.000 0.00 0.00 0.00 3.86
1061 1204 1.803366 AAGCTCGACCGAACGAAGGT 61.803 55.000 0.00 0.00 46.16 3.50
1067 1213 2.853914 GCACAAGCTCGACCGAAC 59.146 61.111 0.00 0.00 37.91 3.95
1459 1615 6.406692 AGAAATCAGCATGGTATACGTAGT 57.593 37.500 0.08 0.00 40.82 2.73
1460 1616 6.923508 TCAAGAAATCAGCATGGTATACGTAG 59.076 38.462 0.08 0.00 36.16 3.51
1461 1617 6.811954 TCAAGAAATCAGCATGGTATACGTA 58.188 36.000 0.00 0.00 36.16 3.57
1462 1618 5.670485 TCAAGAAATCAGCATGGTATACGT 58.330 37.500 0.00 0.00 36.16 3.57
1463 1619 6.037062 TGTTCAAGAAATCAGCATGGTATACG 59.963 38.462 0.00 0.00 36.16 3.06
1471 1627 4.516698 ACGAACTGTTCAAGAAATCAGCAT 59.483 37.500 19.56 0.00 0.00 3.79
1521 1682 3.941483 CCAGATCCTTAATGAAGCGTGTT 59.059 43.478 0.00 0.00 0.00 3.32
1561 1731 9.315525 GTGAGACCATAGATATCATGATGATTG 57.684 37.037 18.72 5.23 38.26 2.67
1633 1803 8.868103 ACTCATGCATCTAAGAATCTTCAGATA 58.132 33.333 0.00 0.00 33.73 1.98
1677 1847 6.869913 ACAAATTGATGGACAGCAACTAATTG 59.130 34.615 5.02 10.51 39.70 2.32
1715 1885 1.670406 GCTGCCATGCTATCCCTCG 60.670 63.158 0.00 0.00 0.00 4.63
1766 1947 0.323178 CTGCAGGGATGGAAGTTGCT 60.323 55.000 5.57 0.00 35.85 3.91
1809 1990 9.953565 AAAACATGGCACTTAATTCTAGTACTA 57.046 29.630 1.89 1.89 0.00 1.82
1811 1992 9.556030 GAAAAACATGGCACTTAATTCTAGTAC 57.444 33.333 0.00 0.00 0.00 2.73
1814 1995 7.542130 GGTGAAAAACATGGCACTTAATTCTAG 59.458 37.037 0.00 0.00 0.00 2.43
1824 2026 7.954788 TTTATTAAGGTGAAAAACATGGCAC 57.045 32.000 0.00 0.00 0.00 5.01
1864 2066 6.874134 ACAAGTTCAGTACAGTGATATGAACC 59.126 38.462 23.07 13.00 46.91 3.62
1873 2075 5.597806 TCCACTTACAAGTTCAGTACAGTG 58.402 41.667 0.00 0.00 37.08 3.66
1876 2083 5.010314 ACGATCCACTTACAAGTTCAGTACA 59.990 40.000 0.00 0.00 37.08 2.90
2161 2369 7.883311 ACCATGTCAGCTGTTTAGTTATTACTT 59.117 33.333 14.67 0.00 35.78 2.24
2162 2370 7.394816 ACCATGTCAGCTGTTTAGTTATTACT 58.605 34.615 14.67 0.00 38.44 2.24
2163 2371 7.611213 ACCATGTCAGCTGTTTAGTTATTAC 57.389 36.000 14.67 0.49 0.00 1.89
2164 2372 7.490079 CGTACCATGTCAGCTGTTTAGTTATTA 59.510 37.037 14.67 0.00 0.00 0.98
2165 2373 6.312918 CGTACCATGTCAGCTGTTTAGTTATT 59.687 38.462 14.67 0.00 0.00 1.40
2166 2374 5.810587 CGTACCATGTCAGCTGTTTAGTTAT 59.189 40.000 14.67 0.00 0.00 1.89
2173 2381 0.673644 GCCGTACCATGTCAGCTGTT 60.674 55.000 14.67 0.00 0.00 3.16
2221 2649 2.115291 GCTCCCCTGTCGCCATTTC 61.115 63.158 0.00 0.00 0.00 2.17
2249 2677 1.966451 GGGTTTCAGCCTGTGACGG 60.966 63.158 0.00 0.00 33.71 4.79
2272 2700 1.883732 GCGTCTACAGAGCTGGTGA 59.116 57.895 0.00 0.00 34.19 4.02
2282 2710 2.427812 TGTTAATCCCATCGCGTCTACA 59.572 45.455 5.77 0.00 0.00 2.74
2285 2713 2.910688 ATGTTAATCCCATCGCGTCT 57.089 45.000 5.77 0.00 0.00 4.18
2309 2737 4.416738 GCGCCCAGGGAAAGAGCT 62.417 66.667 10.89 0.00 0.00 4.09
2411 2854 4.821589 GGAGGGAGCTTCGGTGCG 62.822 72.222 0.00 0.00 38.13 5.34
2445 2888 1.407299 CCGAGGAGGATTTGCATGTGA 60.407 52.381 0.00 0.00 45.00 3.58
2448 2891 0.749091 TGCCGAGGAGGATTTGCATG 60.749 55.000 0.00 0.00 45.00 4.06
2453 2896 2.592308 GCCTGCCGAGGAGGATTT 59.408 61.111 14.15 0.00 42.93 2.17
2486 2929 1.139095 GGCCGTCGACGAGATCTTT 59.861 57.895 37.65 0.00 43.02 2.52
2597 3052 4.675029 CCGTCGCTTCGGTGGGTT 62.675 66.667 8.02 0.00 44.77 4.11
2716 3179 1.429021 CAGCAACACACGCACACTT 59.571 52.632 0.00 0.00 0.00 3.16
2900 3363 1.414527 GCGCGCTAGAGACAAAGACC 61.415 60.000 26.67 0.00 0.00 3.85
2901 3364 1.414527 GGCGCGCTAGAGACAAAGAC 61.415 60.000 32.29 5.07 0.00 3.01
2902 3365 1.153823 GGCGCGCTAGAGACAAAGA 60.154 57.895 32.29 0.00 0.00 2.52
2918 3381 3.787001 CTCACCTTCTCCCCCGGC 61.787 72.222 0.00 0.00 0.00 6.13
2922 3385 1.225704 CATGCCTCACCTTCTCCCC 59.774 63.158 0.00 0.00 0.00 4.81
2994 3469 2.069273 CAGAAATCTTGAACGTCGCCT 58.931 47.619 0.00 0.00 0.00 5.52
2998 3473 4.209452 TGTTGCAGAAATCTTGAACGTC 57.791 40.909 0.00 0.00 0.00 4.34
3035 3510 6.596888 ACCGAACCATATCATCATCATCAATC 59.403 38.462 0.00 0.00 0.00 2.67
3065 3546 3.420893 CAGCTCCATTTTAGTCCACCAA 58.579 45.455 0.00 0.00 0.00 3.67
3079 3560 1.746861 CGGGTGAATTATGCAGCTCCA 60.747 52.381 2.16 0.00 34.39 3.86
3108 3589 1.719780 GATCTTCAACGACACGGACAC 59.280 52.381 0.00 0.00 0.00 3.67
3223 3704 2.629763 GTGGTTCGTCGTGCCAAC 59.370 61.111 10.97 0.00 33.66 3.77
3354 3845 2.048127 GTGCCACCTGACGAGACC 60.048 66.667 0.00 0.00 0.00 3.85
3372 3863 3.821841 CCAAAGCAACGAATTACCACTC 58.178 45.455 0.00 0.00 0.00 3.51
3443 3937 6.696042 TTAATTATCCCCCGAGATGATCAA 57.304 37.500 0.00 0.00 0.00 2.57
3445 3939 6.599638 CCTTTTAATTATCCCCCGAGATGATC 59.400 42.308 0.00 0.00 0.00 2.92
3449 3943 4.354087 AGCCTTTTAATTATCCCCCGAGAT 59.646 41.667 0.00 0.00 0.00 2.75
3450 3944 3.720002 AGCCTTTTAATTATCCCCCGAGA 59.280 43.478 0.00 0.00 0.00 4.04
3451 3945 4.100279 AGCCTTTTAATTATCCCCCGAG 57.900 45.455 0.00 0.00 0.00 4.63
3452 3946 4.529716 AAGCCTTTTAATTATCCCCCGA 57.470 40.909 0.00 0.00 0.00 5.14
3463 3957 9.974980 CTAAACCTAACATCAAAAGCCTTTTAA 57.025 29.630 1.38 0.00 0.00 1.52
3464 3958 9.357161 TCTAAACCTAACATCAAAAGCCTTTTA 57.643 29.630 1.38 0.00 0.00 1.52
3467 3961 7.093771 CCATCTAAACCTAACATCAAAAGCCTT 60.094 37.037 0.00 0.00 0.00 4.35
3468 3962 6.378280 CCATCTAAACCTAACATCAAAAGCCT 59.622 38.462 0.00 0.00 0.00 4.58
3469 3963 6.377146 TCCATCTAAACCTAACATCAAAAGCC 59.623 38.462 0.00 0.00 0.00 4.35
3470 3964 7.391148 TCCATCTAAACCTAACATCAAAAGC 57.609 36.000 0.00 0.00 0.00 3.51
3471 3965 8.408601 CCATCCATCTAAACCTAACATCAAAAG 58.591 37.037 0.00 0.00 0.00 2.27
3472 3966 7.893302 ACCATCCATCTAAACCTAACATCAAAA 59.107 33.333 0.00 0.00 0.00 2.44
3473 3967 7.410174 ACCATCCATCTAAACCTAACATCAAA 58.590 34.615 0.00 0.00 0.00 2.69
3474 3968 6.969043 ACCATCCATCTAAACCTAACATCAA 58.031 36.000 0.00 0.00 0.00 2.57
3475 3969 6.575244 ACCATCCATCTAAACCTAACATCA 57.425 37.500 0.00 0.00 0.00 3.07
3476 3970 7.201821 CCAAACCATCCATCTAAACCTAACATC 60.202 40.741 0.00 0.00 0.00 3.06
3477 3971 6.607198 CCAAACCATCCATCTAAACCTAACAT 59.393 38.462 0.00 0.00 0.00 2.71
3478 3972 5.949354 CCAAACCATCCATCTAAACCTAACA 59.051 40.000 0.00 0.00 0.00 2.41
3479 3973 5.359860 CCCAAACCATCCATCTAAACCTAAC 59.640 44.000 0.00 0.00 0.00 2.34
3480 3974 5.015817 ACCCAAACCATCCATCTAAACCTAA 59.984 40.000 0.00 0.00 0.00 2.69
3481 3975 4.542525 ACCCAAACCATCCATCTAAACCTA 59.457 41.667 0.00 0.00 0.00 3.08
3482 3976 3.336694 ACCCAAACCATCCATCTAAACCT 59.663 43.478 0.00 0.00 0.00 3.50
3483 3977 3.708451 ACCCAAACCATCCATCTAAACC 58.292 45.455 0.00 0.00 0.00 3.27
3484 3978 5.357032 CACTACCCAAACCATCCATCTAAAC 59.643 44.000 0.00 0.00 0.00 2.01
3485 3979 5.505780 CACTACCCAAACCATCCATCTAAA 58.494 41.667 0.00 0.00 0.00 1.85
3486 3980 4.080015 CCACTACCCAAACCATCCATCTAA 60.080 45.833 0.00 0.00 0.00 2.10
3487 3981 3.458118 CCACTACCCAAACCATCCATCTA 59.542 47.826 0.00 0.00 0.00 1.98
3488 3982 2.242196 CCACTACCCAAACCATCCATCT 59.758 50.000 0.00 0.00 0.00 2.90
3489 3983 2.654863 CCACTACCCAAACCATCCATC 58.345 52.381 0.00 0.00 0.00 3.51
3490 3984 1.341976 GCCACTACCCAAACCATCCAT 60.342 52.381 0.00 0.00 0.00 3.41
3491 3985 0.039035 GCCACTACCCAAACCATCCA 59.961 55.000 0.00 0.00 0.00 3.41
3492 3986 0.331616 AGCCACTACCCAAACCATCC 59.668 55.000 0.00 0.00 0.00 3.51
3493 3987 1.004277 TGAGCCACTACCCAAACCATC 59.996 52.381 0.00 0.00 0.00 3.51
3494 3988 1.004745 CTGAGCCACTACCCAAACCAT 59.995 52.381 0.00 0.00 0.00 3.55
3495 3989 0.400213 CTGAGCCACTACCCAAACCA 59.600 55.000 0.00 0.00 0.00 3.67
3496 3990 0.960861 GCTGAGCCACTACCCAAACC 60.961 60.000 0.00 0.00 0.00 3.27
3497 3991 0.036875 AGCTGAGCCACTACCCAAAC 59.963 55.000 0.00 0.00 0.00 2.93
3498 3992 1.555075 CTAGCTGAGCCACTACCCAAA 59.445 52.381 0.00 0.00 0.00 3.28
3499 3993 1.195115 CTAGCTGAGCCACTACCCAA 58.805 55.000 0.00 0.00 0.00 4.12
3500 3994 1.330655 GCTAGCTGAGCCACTACCCA 61.331 60.000 7.70 0.00 46.41 4.51
3501 3995 1.443828 GCTAGCTGAGCCACTACCC 59.556 63.158 7.70 0.00 46.41 3.69
3510 4004 4.613925 TGATTAAGGGATGCTAGCTGAG 57.386 45.455 17.23 0.00 0.00 3.35
3511 4005 6.881067 ATATGATTAAGGGATGCTAGCTGA 57.119 37.500 17.23 0.00 0.00 4.26
3512 4006 6.318144 CCAATATGATTAAGGGATGCTAGCTG 59.682 42.308 17.23 0.00 0.00 4.24
3513 4007 6.216251 TCCAATATGATTAAGGGATGCTAGCT 59.784 38.462 17.23 0.83 0.00 3.32
3514 4008 6.418101 TCCAATATGATTAAGGGATGCTAGC 58.582 40.000 8.10 8.10 0.00 3.42
3515 4009 9.775854 CTATCCAATATGATTAAGGGATGCTAG 57.224 37.037 0.00 0.00 35.96 3.42
3516 4010 8.717717 CCTATCCAATATGATTAAGGGATGCTA 58.282 37.037 0.00 0.00 35.96 3.49
3517 4011 7.407033 TCCTATCCAATATGATTAAGGGATGCT 59.593 37.037 0.00 0.00 35.96 3.79
3518 4012 7.577303 TCCTATCCAATATGATTAAGGGATGC 58.423 38.462 0.00 0.00 35.96 3.91
3519 4013 8.776119 ACTCCTATCCAATATGATTAAGGGATG 58.224 37.037 0.00 0.00 35.96 3.51
3520 4014 8.940012 ACTCCTATCCAATATGATTAAGGGAT 57.060 34.615 0.00 0.00 38.58 3.85
3521 4015 9.494055 CTACTCCTATCCAATATGATTAAGGGA 57.506 37.037 0.00 0.00 0.00 4.20
3522 4016 8.207545 GCTACTCCTATCCAATATGATTAAGGG 58.792 40.741 0.00 0.00 0.00 3.95
3523 4017 7.923344 CGCTACTCCTATCCAATATGATTAAGG 59.077 40.741 0.00 0.00 0.00 2.69
3524 4018 7.923344 CCGCTACTCCTATCCAATATGATTAAG 59.077 40.741 0.00 0.00 0.00 1.85
3525 4019 7.632898 GCCGCTACTCCTATCCAATATGATTAA 60.633 40.741 0.00 0.00 0.00 1.40
3526 4020 6.183360 GCCGCTACTCCTATCCAATATGATTA 60.183 42.308 0.00 0.00 0.00 1.75
3527 4021 5.395768 GCCGCTACTCCTATCCAATATGATT 60.396 44.000 0.00 0.00 0.00 2.57
3528 4022 4.100189 GCCGCTACTCCTATCCAATATGAT 59.900 45.833 0.00 0.00 0.00 2.45
3529 4023 3.447586 GCCGCTACTCCTATCCAATATGA 59.552 47.826 0.00 0.00 0.00 2.15
3530 4024 3.195610 TGCCGCTACTCCTATCCAATATG 59.804 47.826 0.00 0.00 0.00 1.78
3531 4025 3.441101 TGCCGCTACTCCTATCCAATAT 58.559 45.455 0.00 0.00 0.00 1.28
3532 4026 2.884320 TGCCGCTACTCCTATCCAATA 58.116 47.619 0.00 0.00 0.00 1.90
3533 4027 1.717032 TGCCGCTACTCCTATCCAAT 58.283 50.000 0.00 0.00 0.00 3.16
3534 4028 1.717032 ATGCCGCTACTCCTATCCAA 58.283 50.000 0.00 0.00 0.00 3.53
3535 4029 2.597578 TATGCCGCTACTCCTATCCA 57.402 50.000 0.00 0.00 0.00 3.41
3536 4030 2.761208 ACATATGCCGCTACTCCTATCC 59.239 50.000 1.58 0.00 0.00 2.59
3537 4031 4.177026 CAACATATGCCGCTACTCCTATC 58.823 47.826 1.58 0.00 0.00 2.08
3538 4032 4.193826 CAACATATGCCGCTACTCCTAT 57.806 45.455 1.58 0.00 0.00 2.57
3539 4033 3.660501 CAACATATGCCGCTACTCCTA 57.339 47.619 1.58 0.00 0.00 2.94
3540 4034 2.533266 CAACATATGCCGCTACTCCT 57.467 50.000 1.58 0.00 0.00 3.69
3556 4050 4.500375 GCCTAAATCCATCATCTTGGCAAC 60.500 45.833 0.00 0.00 37.91 4.17
3557 4051 3.638160 GCCTAAATCCATCATCTTGGCAA 59.362 43.478 0.00 0.00 37.91 4.52
3558 4052 3.225104 GCCTAAATCCATCATCTTGGCA 58.775 45.455 0.00 0.00 37.91 4.92
3559 4053 3.225104 TGCCTAAATCCATCATCTTGGC 58.775 45.455 0.00 0.00 36.66 4.52
3560 4054 7.713734 AATATGCCTAAATCCATCATCTTGG 57.286 36.000 0.00 0.00 38.18 3.61
3563 4057 9.986157 ACAATAATATGCCTAAATCCATCATCT 57.014 29.630 0.00 0.00 0.00 2.90
3586 4080 9.399797 TCTCGAGGACAGTATAAAGTATTACAA 57.600 33.333 13.56 0.00 0.00 2.41
3587 4081 8.969260 TCTCGAGGACAGTATAAAGTATTACA 57.031 34.615 13.56 0.00 0.00 2.41
3593 4087 9.132923 TGATTATTCTCGAGGACAGTATAAAGT 57.867 33.333 13.56 0.00 0.00 2.66
3594 4088 9.967346 TTGATTATTCTCGAGGACAGTATAAAG 57.033 33.333 13.56 0.00 0.00 1.85
3599 4093 9.967346 CTTTATTGATTATTCTCGAGGACAGTA 57.033 33.333 13.56 0.00 0.00 2.74
3600 4094 8.478877 ACTTTATTGATTATTCTCGAGGACAGT 58.521 33.333 13.56 0.00 0.00 3.55
3601 4095 8.759641 CACTTTATTGATTATTCTCGAGGACAG 58.240 37.037 13.56 0.00 0.00 3.51
3602 4096 7.710907 CCACTTTATTGATTATTCTCGAGGACA 59.289 37.037 13.56 0.00 0.00 4.02
3603 4097 7.307455 GCCACTTTATTGATTATTCTCGAGGAC 60.307 40.741 13.56 0.00 0.00 3.85
3604 4098 6.706270 GCCACTTTATTGATTATTCTCGAGGA 59.294 38.462 13.56 3.44 0.00 3.71
3605 4099 6.073003 GGCCACTTTATTGATTATTCTCGAGG 60.073 42.308 13.56 0.00 0.00 4.63
3606 4100 6.346919 CGGCCACTTTATTGATTATTCTCGAG 60.347 42.308 5.93 5.93 0.00 4.04
3607 4101 5.465390 CGGCCACTTTATTGATTATTCTCGA 59.535 40.000 2.24 0.00 0.00 4.04
3608 4102 5.236478 ACGGCCACTTTATTGATTATTCTCG 59.764 40.000 2.24 0.00 0.00 4.04
3609 4103 6.619801 ACGGCCACTTTATTGATTATTCTC 57.380 37.500 2.24 0.00 0.00 2.87
3610 4104 7.308589 GCATACGGCCACTTTATTGATTATTCT 60.309 37.037 2.24 0.00 36.11 2.40
3611 4105 6.801862 GCATACGGCCACTTTATTGATTATTC 59.198 38.462 2.24 0.00 36.11 1.75
3612 4106 6.264292 TGCATACGGCCACTTTATTGATTATT 59.736 34.615 2.24 0.00 43.89 1.40
3613 4107 5.767665 TGCATACGGCCACTTTATTGATTAT 59.232 36.000 2.24 0.00 43.89 1.28
3614 4108 5.126779 TGCATACGGCCACTTTATTGATTA 58.873 37.500 2.24 0.00 43.89 1.75
3615 4109 3.951037 TGCATACGGCCACTTTATTGATT 59.049 39.130 2.24 0.00 43.89 2.57
3616 4110 3.550820 TGCATACGGCCACTTTATTGAT 58.449 40.909 2.24 0.00 43.89 2.57
3617 4111 2.992593 TGCATACGGCCACTTTATTGA 58.007 42.857 2.24 0.00 43.89 2.57
3618 4112 3.565482 AGATGCATACGGCCACTTTATTG 59.435 43.478 2.24 0.00 43.89 1.90
3619 4113 3.565482 CAGATGCATACGGCCACTTTATT 59.435 43.478 2.24 0.00 43.89 1.40
3620 4114 3.141398 CAGATGCATACGGCCACTTTAT 58.859 45.455 2.24 0.00 43.89 1.40
3621 4115 2.169561 TCAGATGCATACGGCCACTTTA 59.830 45.455 2.24 0.00 43.89 1.85
3622 4116 1.065491 TCAGATGCATACGGCCACTTT 60.065 47.619 2.24 0.00 43.89 2.66
3623 4117 0.541392 TCAGATGCATACGGCCACTT 59.459 50.000 2.24 0.00 43.89 3.16
3624 4118 0.761187 ATCAGATGCATACGGCCACT 59.239 50.000 2.24 0.00 43.89 4.00
3625 4119 0.870393 CATCAGATGCATACGGCCAC 59.130 55.000 2.24 0.00 43.89 5.01
3626 4120 3.310727 CATCAGATGCATACGGCCA 57.689 52.632 2.24 0.00 43.89 5.36
3636 4130 1.597302 CCGGCCTCTGCATCAGATG 60.597 63.158 5.98 5.98 39.92 2.90
3637 4131 2.815945 CCCGGCCTCTGCATCAGAT 61.816 63.158 0.00 0.00 39.92 2.90
3638 4132 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3639 4133 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
3645 4139 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
3651 4145 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
3652 4146 0.331616 AAAAAGGAGGATGACCCCCG 59.668 55.000 0.00 0.00 36.73 5.73
3653 4147 3.750501 TTAAAAAGGAGGATGACCCCC 57.249 47.619 0.00 0.00 36.73 5.40
3677 4171 5.841267 AACCCCATCTGCCTTTAATTTTT 57.159 34.783 0.00 0.00 0.00 1.94
3678 4172 6.260663 TCTAACCCCATCTGCCTTTAATTTT 58.739 36.000 0.00 0.00 0.00 1.82
3679 4173 5.837829 TCTAACCCCATCTGCCTTTAATTT 58.162 37.500 0.00 0.00 0.00 1.82
3680 4174 5.466127 TCTAACCCCATCTGCCTTTAATT 57.534 39.130 0.00 0.00 0.00 1.40
3681 4175 5.669798 ATCTAACCCCATCTGCCTTTAAT 57.330 39.130 0.00 0.00 0.00 1.40
3682 4176 5.466127 AATCTAACCCCATCTGCCTTTAA 57.534 39.130 0.00 0.00 0.00 1.52
3683 4177 5.908831 TCTAATCTAACCCCATCTGCCTTTA 59.091 40.000 0.00 0.00 0.00 1.85
3684 4178 4.726825 TCTAATCTAACCCCATCTGCCTTT 59.273 41.667 0.00 0.00 0.00 3.11
3685 4179 4.307259 TCTAATCTAACCCCATCTGCCTT 58.693 43.478 0.00 0.00 0.00 4.35
3686 4180 3.906846 CTCTAATCTAACCCCATCTGCCT 59.093 47.826 0.00 0.00 0.00 4.75
3687 4181 3.648545 ACTCTAATCTAACCCCATCTGCC 59.351 47.826 0.00 0.00 0.00 4.85
3688 4182 4.965200 ACTCTAATCTAACCCCATCTGC 57.035 45.455 0.00 0.00 0.00 4.26
3689 4183 7.445945 CCTTTACTCTAATCTAACCCCATCTG 58.554 42.308 0.00 0.00 0.00 2.90
3690 4184 6.043358 GCCTTTACTCTAATCTAACCCCATCT 59.957 42.308 0.00 0.00 0.00 2.90
3691 4185 6.183361 TGCCTTTACTCTAATCTAACCCCATC 60.183 42.308 0.00 0.00 0.00 3.51
3692 4186 5.670361 TGCCTTTACTCTAATCTAACCCCAT 59.330 40.000 0.00 0.00 0.00 4.00
3693 4187 5.034200 TGCCTTTACTCTAATCTAACCCCA 58.966 41.667 0.00 0.00 0.00 4.96
3694 4188 5.625568 TGCCTTTACTCTAATCTAACCCC 57.374 43.478 0.00 0.00 0.00 4.95
3695 4189 6.542735 CCTTTGCCTTTACTCTAATCTAACCC 59.457 42.308 0.00 0.00 0.00 4.11
3696 4190 7.336396 TCCTTTGCCTTTACTCTAATCTAACC 58.664 38.462 0.00 0.00 0.00 2.85
3697 4191 8.831550 CATCCTTTGCCTTTACTCTAATCTAAC 58.168 37.037 0.00 0.00 0.00 2.34
3698 4192 8.768397 TCATCCTTTGCCTTTACTCTAATCTAA 58.232 33.333 0.00 0.00 0.00 2.10
3699 4193 8.319057 TCATCCTTTGCCTTTACTCTAATCTA 57.681 34.615 0.00 0.00 0.00 1.98
3700 4194 7.126421 TCTCATCCTTTGCCTTTACTCTAATCT 59.874 37.037 0.00 0.00 0.00 2.40
3701 4195 7.275920 TCTCATCCTTTGCCTTTACTCTAATC 58.724 38.462 0.00 0.00 0.00 1.75
3702 4196 7.200434 TCTCATCCTTTGCCTTTACTCTAAT 57.800 36.000 0.00 0.00 0.00 1.73
3703 4197 6.620877 TCTCATCCTTTGCCTTTACTCTAA 57.379 37.500 0.00 0.00 0.00 2.10
3704 4198 6.586344 CATCTCATCCTTTGCCTTTACTCTA 58.414 40.000 0.00 0.00 0.00 2.43
3705 4199 5.435291 CATCTCATCCTTTGCCTTTACTCT 58.565 41.667 0.00 0.00 0.00 3.24
3706 4200 4.036144 GCATCTCATCCTTTGCCTTTACTC 59.964 45.833 0.00 0.00 0.00 2.59
3707 4201 3.950395 GCATCTCATCCTTTGCCTTTACT 59.050 43.478 0.00 0.00 0.00 2.24
3708 4202 3.242870 CGCATCTCATCCTTTGCCTTTAC 60.243 47.826 0.00 0.00 0.00 2.01
3709 4203 2.945008 CGCATCTCATCCTTTGCCTTTA 59.055 45.455 0.00 0.00 0.00 1.85
3710 4204 1.747355 CGCATCTCATCCTTTGCCTTT 59.253 47.619 0.00 0.00 0.00 3.11
3711 4205 1.386533 CGCATCTCATCCTTTGCCTT 58.613 50.000 0.00 0.00 0.00 4.35
3712 4206 1.099879 GCGCATCTCATCCTTTGCCT 61.100 55.000 0.30 0.00 0.00 4.75
3713 4207 1.358046 GCGCATCTCATCCTTTGCC 59.642 57.895 0.30 0.00 0.00 4.52
3714 4208 1.358046 GGCGCATCTCATCCTTTGC 59.642 57.895 10.83 0.00 0.00 3.68
3715 4209 1.450531 GGGGCGCATCTCATCCTTTG 61.451 60.000 10.83 0.00 0.00 2.77
3716 4210 1.152881 GGGGCGCATCTCATCCTTT 60.153 57.895 10.83 0.00 0.00 3.11
3717 4211 2.512896 GGGGCGCATCTCATCCTT 59.487 61.111 10.83 0.00 0.00 3.36
3718 4212 3.564218 GGGGGCGCATCTCATCCT 61.564 66.667 10.83 0.00 0.00 3.24
3732 4226 0.105862 AATCCATCATGTGCTGGGGG 60.106 55.000 3.30 0.00 32.45 5.40
3733 4227 2.662535 TAATCCATCATGTGCTGGGG 57.337 50.000 3.30 0.00 32.45 4.96
3734 4228 3.893200 ACAATAATCCATCATGTGCTGGG 59.107 43.478 3.30 0.00 32.45 4.45
3735 4229 5.524971 AACAATAATCCATCATGTGCTGG 57.475 39.130 0.00 0.00 32.83 4.85
3736 4230 7.654568 ACATAACAATAATCCATCATGTGCTG 58.345 34.615 0.00 0.00 0.00 4.41
3737 4231 7.828508 ACATAACAATAATCCATCATGTGCT 57.171 32.000 0.00 0.00 0.00 4.40
3738 4232 9.616634 CTAACATAACAATAATCCATCATGTGC 57.383 33.333 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.