Multiple sequence alignment - TraesCS3D01G108500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G108500 chr3D 100.000 5433 0 0 1 5433 61695216 61700648 0.000000e+00 10033.0
1 TraesCS3D01G108500 chr3D 93.917 822 39 7 4616 5433 469444608 469445422 0.000000e+00 1230.0
2 TraesCS3D01G108500 chr3D 87.368 380 43 5 1908 2283 582021337 582020959 1.080000e-116 431.0
3 TraesCS3D01G108500 chr3D 89.545 220 19 4 264 481 103627974 103628191 5.360000e-70 276.0
4 TraesCS3D01G108500 chr3A 92.956 3847 178 27 820 4615 70720921 70724725 0.000000e+00 5517.0
5 TraesCS3D01G108500 chr3A 85.347 389 50 6 1903 2286 582938291 582938677 3.940000e-106 396.0
6 TraesCS3D01G108500 chr3A 86.761 355 30 6 480 818 70720522 70720875 3.970000e-101 379.0
7 TraesCS3D01G108500 chr3A 86.614 127 14 3 1 127 70719035 70719158 2.640000e-28 137.0
8 TraesCS3D01G108500 chr5D 94.526 822 36 6 4614 5433 199703885 199703071 0.000000e+00 1260.0
9 TraesCS3D01G108500 chr5D 93.666 821 43 4 4615 5433 47866099 47866912 0.000000e+00 1219.0
10 TraesCS3D01G108500 chr5D 96.875 32 1 0 2621 2652 393561944 393561975 3.000000e-03 54.7
11 TraesCS3D01G108500 chr4D 94.383 819 38 3 4616 5433 121410869 121410058 0.000000e+00 1251.0
12 TraesCS3D01G108500 chr4D 93.796 822 42 3 4613 5433 487028407 487029220 0.000000e+00 1227.0
13 TraesCS3D01G108500 chr4D 93.666 821 42 7 4616 5433 25526516 25527329 0.000000e+00 1219.0
14 TraesCS3D01G108500 chr4D 89.764 254 19 6 2960 3210 428936420 428936171 8.780000e-83 318.0
15 TraesCS3D01G108500 chr4D 88.627 255 25 3 2957 3208 22018344 22018597 1.900000e-79 307.0
16 TraesCS3D01G108500 chr4D 89.954 219 19 3 265 481 341032778 341032561 4.140000e-71 279.0
17 TraesCS3D01G108500 chr4D 88.341 223 22 4 261 481 12036309 12036529 1.160000e-66 265.0
18 TraesCS3D01G108500 chr6D 93.902 820 40 4 4616 5433 121590790 121589979 0.000000e+00 1229.0
19 TraesCS3D01G108500 chr6D 89.686 223 20 3 265 484 37582800 37582578 1.150000e-71 281.0
20 TraesCS3D01G108500 chr6D 96.875 32 1 0 2621 2652 390481342 390481373 3.000000e-03 54.7
21 TraesCS3D01G108500 chr6D 100.000 28 0 0 2621 2648 336843178 336843205 1.000000e-02 52.8
22 TraesCS3D01G108500 chr6D 100.000 28 0 0 2621 2648 390489509 390489536 1.000000e-02 52.8
23 TraesCS3D01G108500 chr6D 100.000 28 0 0 2621 2648 390732672 390732699 1.000000e-02 52.8
24 TraesCS3D01G108500 chr1D 93.788 821 41 6 4616 5433 493159488 493160301 0.000000e+00 1225.0
25 TraesCS3D01G108500 chr1D 93.788 821 41 6 4616 5433 493165921 493166734 0.000000e+00 1225.0
26 TraesCS3D01G108500 chr1D 86.458 384 40 8 1904 2283 223723538 223723163 1.410000e-110 411.0
27 TraesCS3D01G108500 chr1D 76.580 538 106 15 1118 1648 481476282 481475758 1.490000e-70 278.0
28 TraesCS3D01G108500 chr1D 76.580 538 106 15 1118 1648 481563971 481564495 1.490000e-70 278.0
29 TraesCS3D01G108500 chr1D 84.462 251 36 3 2960 3209 2211380 2211628 1.510000e-60 244.0
30 TraesCS3D01G108500 chr2B 84.959 738 95 11 1047 1776 245784493 245785222 0.000000e+00 734.0
31 TraesCS3D01G108500 chr2B 85.570 395 48 7 1903 2292 754622621 754623011 6.550000e-109 405.0
32 TraesCS3D01G108500 chr2B 86.774 310 39 1 3218 3527 245791750 245791443 1.450000e-90 344.0
33 TraesCS3D01G108500 chr2B 89.189 222 22 2 266 485 39465610 39465831 5.360000e-70 276.0
34 TraesCS3D01G108500 chr2D 84.232 742 99 10 1047 1776 189377165 189377900 0.000000e+00 706.0
35 TraesCS3D01G108500 chr2D 84.568 324 39 7 3212 3527 189387301 189386981 1.470000e-80 311.0
36 TraesCS3D01G108500 chr2D 84.190 253 37 2 2959 3210 37526613 37526863 5.440000e-60 243.0
37 TraesCS3D01G108500 chr2D 96.875 32 1 0 2621 2652 25038640 25038671 3.000000e-03 54.7
38 TraesCS3D01G108500 chr2D 100.000 29 0 0 2923 2951 159853563 159853591 3.000000e-03 54.7
39 TraesCS3D01G108500 chr2A 82.128 733 110 14 1055 1776 203297615 203298337 4.650000e-170 608.0
40 TraesCS3D01G108500 chr2A 85.849 530 63 6 3533 4061 203319139 203318621 2.210000e-153 553.0
41 TraesCS3D01G108500 chr2A 86.364 374 47 3 1913 2283 100885213 100884841 6.550000e-109 405.0
42 TraesCS3D01G108500 chr2A 85.533 394 46 7 1895 2286 389549735 389549351 8.480000e-108 401.0
43 TraesCS3D01G108500 chr2A 86.392 316 40 2 3212 3527 203319518 203319206 5.210000e-90 342.0
44 TraesCS3D01G108500 chr2A 86.638 232 29 2 4112 4342 203318482 203318252 6.980000e-64 255.0
45 TraesCS3D01G108500 chr2A 78.210 257 46 9 1111 1362 203461400 203461149 7.290000e-34 156.0
46 TraesCS3D01G108500 chr2A 77.444 266 50 9 1127 1387 203537313 203537053 3.390000e-32 150.0
47 TraesCS3D01G108500 chr7A 85.938 384 49 4 1904 2283 700429550 700429168 6.550000e-109 405.0
48 TraesCS3D01G108500 chr7A 83.721 258 37 5 2954 3210 730580099 730579846 7.030000e-59 239.0
49 TraesCS3D01G108500 chr5A 85.788 387 47 6 1904 2283 626074035 626074420 2.360000e-108 403.0
50 TraesCS3D01G108500 chr5A 72.355 709 155 30 1044 1730 546238138 546237449 9.290000e-43 185.0
51 TraesCS3D01G108500 chr5A 96.875 32 1 0 2621 2652 609814476 609814507 3.000000e-03 54.7
52 TraesCS3D01G108500 chr5A 96.875 32 1 0 2621 2652 692060306 692060275 3.000000e-03 54.7
53 TraesCS3D01G108500 chr1A 85.101 396 50 7 1897 2285 481273978 481274371 3.940000e-106 396.0
54 TraesCS3D01G108500 chr6B 89.256 242 21 5 2970 3209 523958153 523958391 1.140000e-76 298.0
55 TraesCS3D01G108500 chr6B 87.892 223 23 3 263 481 435582052 435581830 5.400000e-65 259.0
56 TraesCS3D01G108500 chr1B 76.047 597 116 18 1061 1648 670025446 670026024 8.910000e-73 285.0
57 TraesCS3D01G108500 chr1B 87.558 217 23 4 265 479 304122731 304122945 1.170000e-61 248.0
58 TraesCS3D01G108500 chr1B 87.156 218 25 3 266 481 665021591 665021375 1.510000e-60 244.0
59 TraesCS3D01G108500 chr7D 85.433 254 31 5 2960 3210 66399114 66398864 5.400000e-65 259.0
60 TraesCS3D01G108500 chr7D 84.800 250 33 5 2963 3210 204871003 204870757 4.200000e-61 246.0
61 TraesCS3D01G108500 chr3B 87.273 220 24 4 264 481 369286340 369286123 1.170000e-61 248.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G108500 chr3D 61695216 61700648 5432 False 10033.000000 10033 100.000 1 5433 1 chr3D.!!$F1 5432
1 TraesCS3D01G108500 chr3D 469444608 469445422 814 False 1230.000000 1230 93.917 4616 5433 1 chr3D.!!$F3 817
2 TraesCS3D01G108500 chr3A 70719035 70724725 5690 False 2011.000000 5517 88.777 1 4615 3 chr3A.!!$F2 4614
3 TraesCS3D01G108500 chr5D 199703071 199703885 814 True 1260.000000 1260 94.526 4614 5433 1 chr5D.!!$R1 819
4 TraesCS3D01G108500 chr5D 47866099 47866912 813 False 1219.000000 1219 93.666 4615 5433 1 chr5D.!!$F1 818
5 TraesCS3D01G108500 chr4D 121410058 121410869 811 True 1251.000000 1251 94.383 4616 5433 1 chr4D.!!$R1 817
6 TraesCS3D01G108500 chr4D 487028407 487029220 813 False 1227.000000 1227 93.796 4613 5433 1 chr4D.!!$F4 820
7 TraesCS3D01G108500 chr4D 25526516 25527329 813 False 1219.000000 1219 93.666 4616 5433 1 chr4D.!!$F3 817
8 TraesCS3D01G108500 chr6D 121589979 121590790 811 True 1229.000000 1229 93.902 4616 5433 1 chr6D.!!$R2 817
9 TraesCS3D01G108500 chr1D 493159488 493160301 813 False 1225.000000 1225 93.788 4616 5433 1 chr1D.!!$F3 817
10 TraesCS3D01G108500 chr1D 493165921 493166734 813 False 1225.000000 1225 93.788 4616 5433 1 chr1D.!!$F4 817
11 TraesCS3D01G108500 chr1D 481475758 481476282 524 True 278.000000 278 76.580 1118 1648 1 chr1D.!!$R2 530
12 TraesCS3D01G108500 chr1D 481563971 481564495 524 False 278.000000 278 76.580 1118 1648 1 chr1D.!!$F2 530
13 TraesCS3D01G108500 chr2B 245784493 245785222 729 False 734.000000 734 84.959 1047 1776 1 chr2B.!!$F2 729
14 TraesCS3D01G108500 chr2D 189377165 189377900 735 False 706.000000 706 84.232 1047 1776 1 chr2D.!!$F4 729
15 TraesCS3D01G108500 chr2A 203297615 203298337 722 False 608.000000 608 82.128 1055 1776 1 chr2A.!!$F1 721
16 TraesCS3D01G108500 chr2A 203318252 203319518 1266 True 383.333333 553 86.293 3212 4342 3 chr2A.!!$R5 1130
17 TraesCS3D01G108500 chr1B 670025446 670026024 578 False 285.000000 285 76.047 1061 1648 1 chr1B.!!$F2 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 1549 0.035739 AAGCATGGTAACCCGAACGT 59.964 50.0 0.00 0.00 0.00 3.99 F
316 1550 0.035739 AGCATGGTAACCCGAACGTT 59.964 50.0 0.00 0.00 0.00 3.99 F
687 1936 0.303493 CAAGGACACGGTGTTGAACG 59.697 55.0 15.94 0.08 0.00 3.95 F
993 2286 0.329596 GGAGGAGGTTGCCATTCACT 59.670 55.0 0.00 0.00 0.00 3.41 F
1044 2337 0.815734 ACATCGTCCTCGTAACCCTG 59.184 55.0 0.00 0.00 38.33 4.45 F
1971 3325 1.085893 TGCAAGCATACCACGTCATG 58.914 50.0 0.00 0.00 0.00 3.07 F
3337 4711 0.322975 GGCTCTCCAGAAGTTCAGCA 59.677 55.0 12.60 0.00 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1846 3191 0.255890 GTAGCAAGCCTTCCATGGGA 59.744 55.0 13.02 0.69 0.00 4.37 R
1993 3347 0.393077 ATATGGTAGTGAGGGTGCGC 59.607 55.0 0.00 0.00 0.00 6.09 R
2567 3931 0.390472 CTTGCTCGTCTTGTCCTCCC 60.390 60.0 0.00 0.00 0.00 4.30 R
2880 4246 0.092351 GTCGCACGACGTAATGTTGG 59.908 55.0 7.51 0.00 44.19 3.77 R
2897 4263 0.373716 CAGCGGCAAAGTTATCCGTC 59.626 55.0 14.64 8.81 44.58 4.79 R
3430 4804 0.179045 AGGCAAGCAGTTTCTCGTGT 60.179 50.0 0.00 0.00 0.00 4.49 R
5111 6638 0.189822 GGCCCAGAGATACCTCTCCT 59.810 60.0 0.00 0.00 46.38 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.762745 TGCTAGGTTTGAACGACTTCC 58.237 47.619 0.00 0.00 0.00 3.46
22 23 1.725164 GCTAGGTTTGAACGACTTCCG 59.275 52.381 0.00 0.00 45.44 4.30
23 24 2.608752 GCTAGGTTTGAACGACTTCCGA 60.609 50.000 0.00 0.00 41.76 4.55
24 25 1.861971 AGGTTTGAACGACTTCCGAC 58.138 50.000 0.00 0.00 41.76 4.79
25 26 1.137479 AGGTTTGAACGACTTCCGACA 59.863 47.619 0.00 0.00 41.76 4.35
26 27 2.140717 GGTTTGAACGACTTCCGACAT 58.859 47.619 0.00 0.00 41.76 3.06
27 28 3.006110 AGGTTTGAACGACTTCCGACATA 59.994 43.478 0.00 0.00 41.76 2.29
28 29 3.367025 GGTTTGAACGACTTCCGACATAG 59.633 47.826 0.00 0.00 41.76 2.23
36 37 4.517832 ACGACTTCCGACATAGTATGCATA 59.482 41.667 10.16 1.16 41.76 3.14
40 41 5.639506 ACTTCCGACATAGTATGCATATTGC 59.360 40.000 10.16 0.00 45.29 3.56
50 51 2.379054 GCATATTGCGACACGTCCA 58.621 52.632 0.00 0.00 31.71 4.02
51 52 0.937304 GCATATTGCGACACGTCCAT 59.063 50.000 0.00 0.00 31.71 3.41
53 54 2.473816 CATATTGCGACACGTCCATCT 58.526 47.619 0.00 0.00 0.00 2.90
101 102 6.515832 AGAAAACTCGAGAAAATGCCAAAAT 58.484 32.000 21.68 0.00 0.00 1.82
111 112 7.373966 CGAGAAAATGCCAAAATTTGTCAAAAG 59.626 33.333 1.31 0.00 30.21 2.27
113 114 8.738106 AGAAAATGCCAAAATTTGTCAAAAGAA 58.262 25.926 1.31 0.00 30.21 2.52
114 115 9.351570 GAAAATGCCAAAATTTGTCAAAAGAAA 57.648 25.926 1.31 0.00 30.21 2.52
129 260 6.515002 GTCAAAAGAAACAAAAACAACTTCGC 59.485 34.615 0.00 0.00 0.00 4.70
153 284 3.569250 TTTTTGAGTTTATCTGGCCGC 57.431 42.857 0.00 0.00 0.00 6.53
154 285 2.192664 TTTGAGTTTATCTGGCCGCA 57.807 45.000 0.00 0.00 0.00 5.69
155 286 1.448985 TTGAGTTTATCTGGCCGCAC 58.551 50.000 0.00 0.00 0.00 5.34
156 287 0.323302 TGAGTTTATCTGGCCGCACA 59.677 50.000 0.00 0.00 0.00 4.57
157 288 1.271108 TGAGTTTATCTGGCCGCACAA 60.271 47.619 0.00 0.00 0.00 3.33
161 292 3.258123 AGTTTATCTGGCCGCACAATTTT 59.742 39.130 0.00 0.00 0.00 1.82
201 1435 6.011981 TGGTTTCAGGAAAGGGTCAATATACT 60.012 38.462 0.00 0.00 0.00 2.12
203 1437 5.630415 TCAGGAAAGGGTCAATATACTGG 57.370 43.478 0.00 0.00 0.00 4.00
205 1439 3.138468 AGGAAAGGGTCAATATACTGGCC 59.862 47.826 0.00 0.00 40.62 5.36
213 1447 1.003972 CAATATACTGGCCGTGTTGCG 60.004 52.381 6.52 0.00 40.95 4.85
264 1498 4.048600 TGGTTAGTCCAGGCCCATAATAA 58.951 43.478 0.00 0.00 41.93 1.40
265 1499 4.141344 TGGTTAGTCCAGGCCCATAATAAC 60.141 45.833 0.00 4.88 41.93 1.89
266 1500 2.930826 AGTCCAGGCCCATAATAACG 57.069 50.000 0.00 0.00 0.00 3.18
267 1501 1.420138 AGTCCAGGCCCATAATAACGG 59.580 52.381 0.00 0.00 0.00 4.44
268 1502 1.142262 GTCCAGGCCCATAATAACGGT 59.858 52.381 0.00 0.00 0.00 4.83
269 1503 2.369532 GTCCAGGCCCATAATAACGGTA 59.630 50.000 0.00 0.00 0.00 4.02
270 1504 3.047115 TCCAGGCCCATAATAACGGTAA 58.953 45.455 0.00 0.00 0.00 2.85
271 1505 3.653836 TCCAGGCCCATAATAACGGTAAT 59.346 43.478 0.00 0.00 0.00 1.89
272 1506 3.756434 CCAGGCCCATAATAACGGTAATG 59.244 47.826 0.00 0.00 0.00 1.90
273 1507 4.505918 CCAGGCCCATAATAACGGTAATGA 60.506 45.833 0.00 0.00 0.00 2.57
274 1508 5.253330 CAGGCCCATAATAACGGTAATGAT 58.747 41.667 0.00 0.00 0.00 2.45
275 1509 6.411376 CAGGCCCATAATAACGGTAATGATA 58.589 40.000 0.00 0.00 0.00 2.15
276 1510 6.882140 CAGGCCCATAATAACGGTAATGATAA 59.118 38.462 0.00 0.00 0.00 1.75
277 1511 7.556275 CAGGCCCATAATAACGGTAATGATAAT 59.444 37.037 0.00 0.00 0.00 1.28
278 1512 8.113462 AGGCCCATAATAACGGTAATGATAATT 58.887 33.333 0.00 0.00 0.00 1.40
279 1513 8.403236 GGCCCATAATAACGGTAATGATAATTC 58.597 37.037 0.00 0.00 0.00 2.17
280 1514 8.403236 GCCCATAATAACGGTAATGATAATTCC 58.597 37.037 0.00 0.00 0.00 3.01
281 1515 8.899771 CCCATAATAACGGTAATGATAATTCCC 58.100 37.037 0.00 0.00 0.00 3.97
282 1516 8.609176 CCATAATAACGGTAATGATAATTCCCG 58.391 37.037 5.28 5.28 41.09 5.14
283 1517 9.373603 CATAATAACGGTAATGATAATTCCCGA 57.626 33.333 13.47 0.00 38.75 5.14
284 1518 9.947433 ATAATAACGGTAATGATAATTCCCGAA 57.053 29.630 13.47 2.06 38.75 4.30
285 1519 5.996669 AACGGTAATGATAATTCCCGAAC 57.003 39.130 13.47 0.00 38.75 3.95
286 1520 4.053295 ACGGTAATGATAATTCCCGAACG 58.947 43.478 13.47 0.00 38.75 3.95
287 1521 4.053295 CGGTAATGATAATTCCCGAACGT 58.947 43.478 0.37 0.00 37.66 3.99
288 1522 4.508861 CGGTAATGATAATTCCCGAACGTT 59.491 41.667 0.00 0.00 37.66 3.99
289 1523 5.006941 CGGTAATGATAATTCCCGAACGTTT 59.993 40.000 0.46 0.00 37.66 3.60
290 1524 6.196571 GGTAATGATAATTCCCGAACGTTTG 58.803 40.000 8.68 8.68 0.00 2.93
291 1525 4.893424 ATGATAATTCCCGAACGTTTGG 57.107 40.909 25.42 25.42 0.00 3.28
292 1526 3.940319 TGATAATTCCCGAACGTTTGGA 58.060 40.909 32.33 23.03 33.23 3.53
293 1527 4.519213 TGATAATTCCCGAACGTTTGGAT 58.481 39.130 32.33 18.78 33.23 3.41
294 1528 4.944930 TGATAATTCCCGAACGTTTGGATT 59.055 37.500 32.33 25.23 33.23 3.01
295 1529 5.416326 TGATAATTCCCGAACGTTTGGATTT 59.584 36.000 32.33 25.65 33.23 2.17
296 1530 6.598457 TGATAATTCCCGAACGTTTGGATTTA 59.402 34.615 32.33 26.60 33.23 1.40
297 1531 5.708877 AATTCCCGAACGTTTGGATTTAA 57.291 34.783 32.33 20.49 33.23 1.52
298 1532 4.752661 TTCCCGAACGTTTGGATTTAAG 57.247 40.909 32.33 16.33 33.23 1.85
299 1533 2.485038 TCCCGAACGTTTGGATTTAAGC 59.515 45.455 32.33 1.18 33.23 3.09
300 1534 2.226912 CCCGAACGTTTGGATTTAAGCA 59.773 45.455 32.33 0.00 33.23 3.91
301 1535 3.119637 CCCGAACGTTTGGATTTAAGCAT 60.120 43.478 32.33 0.00 33.23 3.79
302 1536 3.851403 CCGAACGTTTGGATTTAAGCATG 59.149 43.478 27.84 0.00 33.23 4.06
303 1537 3.851403 CGAACGTTTGGATTTAAGCATGG 59.149 43.478 7.72 0.00 0.00 3.66
304 1538 4.614993 CGAACGTTTGGATTTAAGCATGGT 60.615 41.667 7.72 0.00 0.00 3.55
305 1539 5.391097 CGAACGTTTGGATTTAAGCATGGTA 60.391 40.000 7.72 0.00 0.00 3.25
306 1540 5.968528 ACGTTTGGATTTAAGCATGGTAA 57.031 34.783 0.00 0.00 0.00 2.85
307 1541 5.705902 ACGTTTGGATTTAAGCATGGTAAC 58.294 37.500 0.00 0.00 0.00 2.50
308 1542 5.099575 CGTTTGGATTTAAGCATGGTAACC 58.900 41.667 0.00 0.00 0.00 2.85
309 1543 5.416083 GTTTGGATTTAAGCATGGTAACCC 58.584 41.667 0.00 0.00 0.00 4.11
310 1544 3.283751 TGGATTTAAGCATGGTAACCCG 58.716 45.455 0.00 0.00 0.00 5.28
311 1545 3.054287 TGGATTTAAGCATGGTAACCCGA 60.054 43.478 0.00 0.00 0.00 5.14
312 1546 3.949113 GGATTTAAGCATGGTAACCCGAA 59.051 43.478 0.00 0.00 0.00 4.30
313 1547 4.201980 GGATTTAAGCATGGTAACCCGAAC 60.202 45.833 0.00 0.00 0.00 3.95
314 1548 2.012937 TAAGCATGGTAACCCGAACG 57.987 50.000 0.00 0.00 0.00 3.95
315 1549 0.035739 AAGCATGGTAACCCGAACGT 59.964 50.000 0.00 0.00 0.00 3.99
316 1550 0.035739 AGCATGGTAACCCGAACGTT 59.964 50.000 0.00 0.00 0.00 3.99
317 1551 0.876399 GCATGGTAACCCGAACGTTT 59.124 50.000 0.46 0.00 0.00 3.60
318 1552 1.267533 GCATGGTAACCCGAACGTTTT 59.732 47.619 0.46 0.00 0.00 2.43
319 1553 2.483491 GCATGGTAACCCGAACGTTTTA 59.517 45.455 0.46 0.00 0.00 1.52
320 1554 3.425227 GCATGGTAACCCGAACGTTTTAG 60.425 47.826 0.46 0.00 0.00 1.85
321 1555 2.765122 TGGTAACCCGAACGTTTTAGG 58.235 47.619 0.46 6.45 0.00 2.69
322 1556 2.103941 TGGTAACCCGAACGTTTTAGGT 59.896 45.455 0.46 7.14 0.00 3.08
323 1557 2.480037 GGTAACCCGAACGTTTTAGGTG 59.520 50.000 15.82 10.27 0.00 4.00
324 1558 1.596603 AACCCGAACGTTTTAGGTGG 58.403 50.000 15.82 7.57 0.00 4.61
325 1559 0.886043 ACCCGAACGTTTTAGGTGGC 60.886 55.000 14.73 0.00 0.00 5.01
326 1560 0.885596 CCCGAACGTTTTAGGTGGCA 60.886 55.000 0.46 0.00 0.00 4.92
327 1561 0.945813 CCGAACGTTTTAGGTGGCAA 59.054 50.000 0.46 0.00 0.00 4.52
328 1562 1.334243 CCGAACGTTTTAGGTGGCAAA 59.666 47.619 0.46 0.00 0.00 3.68
329 1563 2.030628 CCGAACGTTTTAGGTGGCAAAT 60.031 45.455 0.46 0.00 0.00 2.32
330 1564 3.551250 CCGAACGTTTTAGGTGGCAAATT 60.551 43.478 0.46 0.00 0.00 1.82
331 1565 4.045783 CGAACGTTTTAGGTGGCAAATTT 58.954 39.130 0.46 0.00 0.00 1.82
332 1566 5.213675 CGAACGTTTTAGGTGGCAAATTTA 58.786 37.500 0.46 0.00 0.00 1.40
333 1567 5.341196 CGAACGTTTTAGGTGGCAAATTTAG 59.659 40.000 0.46 0.00 0.00 1.85
334 1568 5.777850 ACGTTTTAGGTGGCAAATTTAGT 57.222 34.783 0.00 0.00 0.00 2.24
335 1569 6.151663 ACGTTTTAGGTGGCAAATTTAGTT 57.848 33.333 0.00 0.00 0.00 2.24
336 1570 6.575267 ACGTTTTAGGTGGCAAATTTAGTTT 58.425 32.000 0.00 0.00 0.00 2.66
349 1583 7.725610 CAAATTTAGTTTGCGTGAGATTAGG 57.274 36.000 0.00 0.00 40.62 2.69
350 1584 7.526608 CAAATTTAGTTTGCGTGAGATTAGGA 58.473 34.615 0.00 0.00 40.62 2.94
351 1585 7.681939 AATTTAGTTTGCGTGAGATTAGGAA 57.318 32.000 0.00 0.00 0.00 3.36
352 1586 7.681939 ATTTAGTTTGCGTGAGATTAGGAAA 57.318 32.000 0.00 0.00 0.00 3.13
353 1587 7.499321 TTTAGTTTGCGTGAGATTAGGAAAA 57.501 32.000 0.00 0.00 0.00 2.29
354 1588 5.358298 AGTTTGCGTGAGATTAGGAAAAC 57.642 39.130 0.00 0.00 35.30 2.43
355 1589 4.819630 AGTTTGCGTGAGATTAGGAAAACA 59.180 37.500 0.00 0.00 36.75 2.83
356 1590 5.473504 AGTTTGCGTGAGATTAGGAAAACAT 59.526 36.000 0.00 0.00 36.75 2.71
357 1591 4.944962 TGCGTGAGATTAGGAAAACATG 57.055 40.909 0.00 0.00 0.00 3.21
358 1592 3.689161 TGCGTGAGATTAGGAAAACATGG 59.311 43.478 0.00 0.00 0.00 3.66
359 1593 3.487544 GCGTGAGATTAGGAAAACATGGC 60.488 47.826 0.00 0.00 0.00 4.40
360 1594 3.689161 CGTGAGATTAGGAAAACATGGCA 59.311 43.478 0.00 0.00 0.00 4.92
361 1595 4.155826 CGTGAGATTAGGAAAACATGGCAA 59.844 41.667 0.00 0.00 0.00 4.52
362 1596 5.163622 CGTGAGATTAGGAAAACATGGCAAT 60.164 40.000 0.00 0.00 0.00 3.56
363 1597 6.625740 CGTGAGATTAGGAAAACATGGCAATT 60.626 38.462 0.00 0.00 0.00 2.32
364 1598 7.099120 GTGAGATTAGGAAAACATGGCAATTT 58.901 34.615 0.00 0.00 0.00 1.82
365 1599 7.603784 GTGAGATTAGGAAAACATGGCAATTTT 59.396 33.333 11.36 11.36 0.00 1.82
366 1600 7.818930 TGAGATTAGGAAAACATGGCAATTTTC 59.181 33.333 22.55 22.55 41.87 2.29
367 1601 7.910584 AGATTAGGAAAACATGGCAATTTTCT 58.089 30.769 26.35 18.45 42.13 2.52
368 1602 7.820872 AGATTAGGAAAACATGGCAATTTTCTG 59.179 33.333 26.35 10.16 42.13 3.02
369 1603 5.549742 AGGAAAACATGGCAATTTTCTGA 57.450 34.783 26.35 0.00 42.13 3.27
370 1604 6.117975 AGGAAAACATGGCAATTTTCTGAT 57.882 33.333 26.35 16.57 42.13 2.90
371 1605 7.243604 AGGAAAACATGGCAATTTTCTGATA 57.756 32.000 26.35 0.00 42.13 2.15
372 1606 7.678837 AGGAAAACATGGCAATTTTCTGATAA 58.321 30.769 26.35 0.00 42.13 1.75
373 1607 8.156165 AGGAAAACATGGCAATTTTCTGATAAA 58.844 29.630 26.35 0.00 42.13 1.40
374 1608 8.782144 GGAAAACATGGCAATTTTCTGATAAAA 58.218 29.630 26.35 0.00 42.13 1.52
396 1630 6.494893 AAAAACCAAAAAGGAGAAAGTTGC 57.505 33.333 0.00 0.00 41.22 4.17
397 1631 3.819564 ACCAAAAAGGAGAAAGTTGCC 57.180 42.857 0.00 0.00 41.22 4.52
398 1632 3.103742 ACCAAAAAGGAGAAAGTTGCCA 58.896 40.909 0.00 0.00 41.22 4.92
399 1633 3.711190 ACCAAAAAGGAGAAAGTTGCCAT 59.289 39.130 0.00 0.00 41.22 4.40
400 1634 4.202253 ACCAAAAAGGAGAAAGTTGCCATC 60.202 41.667 0.00 0.00 41.22 3.51
401 1635 4.309933 CAAAAAGGAGAAAGTTGCCATCC 58.690 43.478 0.00 0.00 0.00 3.51
402 1636 2.222227 AAGGAGAAAGTTGCCATCCC 57.778 50.000 0.00 0.00 0.00 3.85
403 1637 1.376649 AGGAGAAAGTTGCCATCCCT 58.623 50.000 0.00 0.00 0.00 4.20
404 1638 1.713078 AGGAGAAAGTTGCCATCCCTT 59.287 47.619 0.00 0.00 0.00 3.95
405 1639 2.919602 AGGAGAAAGTTGCCATCCCTTA 59.080 45.455 0.00 0.00 0.00 2.69
406 1640 3.017442 GGAGAAAGTTGCCATCCCTTAC 58.983 50.000 0.00 0.00 0.00 2.34
407 1641 2.678336 GAGAAAGTTGCCATCCCTTACG 59.322 50.000 0.00 0.00 0.00 3.18
408 1642 2.304761 AGAAAGTTGCCATCCCTTACGA 59.695 45.455 0.00 0.00 0.00 3.43
409 1643 2.871096 AAGTTGCCATCCCTTACGAA 57.129 45.000 0.00 0.00 0.00 3.85
410 1644 2.109425 AGTTGCCATCCCTTACGAAC 57.891 50.000 0.00 0.00 0.00 3.95
411 1645 1.628846 AGTTGCCATCCCTTACGAACT 59.371 47.619 0.00 0.00 0.00 3.01
412 1646 2.835764 AGTTGCCATCCCTTACGAACTA 59.164 45.455 0.00 0.00 0.00 2.24
413 1647 3.262405 AGTTGCCATCCCTTACGAACTAA 59.738 43.478 0.00 0.00 0.00 2.24
414 1648 3.985019 TGCCATCCCTTACGAACTAAA 57.015 42.857 0.00 0.00 0.00 1.85
415 1649 3.869065 TGCCATCCCTTACGAACTAAAG 58.131 45.455 0.00 0.00 0.00 1.85
416 1650 3.262405 TGCCATCCCTTACGAACTAAAGT 59.738 43.478 0.00 0.00 0.00 2.66
417 1651 4.259356 GCCATCCCTTACGAACTAAAGTT 58.741 43.478 0.00 0.00 41.64 2.66
418 1652 5.046448 TGCCATCCCTTACGAACTAAAGTTA 60.046 40.000 0.00 0.00 38.56 2.24
419 1653 5.292834 GCCATCCCTTACGAACTAAAGTTAC 59.707 44.000 0.00 0.00 38.56 2.50
420 1654 5.814188 CCATCCCTTACGAACTAAAGTTACC 59.186 44.000 0.00 0.00 38.56 2.85
421 1655 6.400568 CATCCCTTACGAACTAAAGTTACCA 58.599 40.000 0.00 0.00 38.56 3.25
422 1656 6.610075 TCCCTTACGAACTAAAGTTACCAT 57.390 37.500 0.00 0.00 38.56 3.55
423 1657 6.400568 TCCCTTACGAACTAAAGTTACCATG 58.599 40.000 0.00 0.00 38.56 3.66
424 1658 6.014327 TCCCTTACGAACTAAAGTTACCATGT 60.014 38.462 0.00 0.00 38.56 3.21
425 1659 7.178274 TCCCTTACGAACTAAAGTTACCATGTA 59.822 37.037 0.00 0.00 38.56 2.29
426 1660 7.818930 CCCTTACGAACTAAAGTTACCATGTAA 59.181 37.037 0.00 1.24 38.56 2.41
427 1661 9.206870 CCTTACGAACTAAAGTTACCATGTAAA 57.793 33.333 0.00 0.00 38.56 2.01
431 1665 8.063630 ACGAACTAAAGTTACCATGTAAAAACG 58.936 33.333 0.00 0.00 38.56 3.60
432 1666 8.063630 CGAACTAAAGTTACCATGTAAAAACGT 58.936 33.333 0.00 0.00 38.56 3.99
433 1667 9.720667 GAACTAAAGTTACCATGTAAAAACGTT 57.279 29.630 0.00 0.00 38.56 3.99
434 1668 9.720667 AACTAAAGTTACCATGTAAAAACGTTC 57.279 29.630 0.00 0.00 36.32 3.95
435 1669 8.891720 ACTAAAGTTACCATGTAAAAACGTTCA 58.108 29.630 0.00 0.00 0.00 3.18
436 1670 9.719279 CTAAAGTTACCATGTAAAAACGTTCAA 57.281 29.630 0.00 0.00 0.00 2.69
437 1671 8.623310 AAAGTTACCATGTAAAAACGTTCAAG 57.377 30.769 0.00 0.00 0.00 3.02
438 1672 7.556733 AGTTACCATGTAAAAACGTTCAAGA 57.443 32.000 0.00 0.00 0.00 3.02
439 1673 7.412063 AGTTACCATGTAAAAACGTTCAAGAC 58.588 34.615 0.00 0.00 0.00 3.01
440 1674 5.821516 ACCATGTAAAAACGTTCAAGACA 57.178 34.783 0.00 4.51 0.00 3.41
441 1675 6.197364 ACCATGTAAAAACGTTCAAGACAA 57.803 33.333 0.00 0.00 0.00 3.18
442 1676 6.622549 ACCATGTAAAAACGTTCAAGACAAA 58.377 32.000 0.00 0.00 0.00 2.83
443 1677 6.528774 ACCATGTAAAAACGTTCAAGACAAAC 59.471 34.615 0.00 0.00 0.00 2.93
444 1678 6.750039 CCATGTAAAAACGTTCAAGACAAACT 59.250 34.615 0.00 0.00 0.00 2.66
445 1679 7.253618 CCATGTAAAAACGTTCAAGACAAACTG 60.254 37.037 0.00 0.35 0.00 3.16
446 1680 5.569823 TGTAAAAACGTTCAAGACAAACTGC 59.430 36.000 0.00 0.00 0.00 4.40
447 1681 4.434713 AAAACGTTCAAGACAAACTGCT 57.565 36.364 0.00 0.00 0.00 4.24
448 1682 3.675467 AACGTTCAAGACAAACTGCTC 57.325 42.857 0.00 0.00 0.00 4.26
449 1683 2.627945 ACGTTCAAGACAAACTGCTCA 58.372 42.857 0.00 0.00 0.00 4.26
450 1684 3.006940 ACGTTCAAGACAAACTGCTCAA 58.993 40.909 0.00 0.00 0.00 3.02
451 1685 3.438781 ACGTTCAAGACAAACTGCTCAAA 59.561 39.130 0.00 0.00 0.00 2.69
452 1686 4.083003 ACGTTCAAGACAAACTGCTCAAAA 60.083 37.500 0.00 0.00 0.00 2.44
453 1687 5.036737 CGTTCAAGACAAACTGCTCAAAAT 58.963 37.500 0.00 0.00 0.00 1.82
454 1688 5.172053 CGTTCAAGACAAACTGCTCAAAATC 59.828 40.000 0.00 0.00 0.00 2.17
455 1689 5.186996 TCAAGACAAACTGCTCAAAATCC 57.813 39.130 0.00 0.00 0.00 3.01
456 1690 3.904136 AGACAAACTGCTCAAAATCCG 57.096 42.857 0.00 0.00 0.00 4.18
457 1691 3.476552 AGACAAACTGCTCAAAATCCGA 58.523 40.909 0.00 0.00 0.00 4.55
458 1692 3.882888 AGACAAACTGCTCAAAATCCGAA 59.117 39.130 0.00 0.00 0.00 4.30
459 1693 3.964909 ACAAACTGCTCAAAATCCGAAC 58.035 40.909 0.00 0.00 0.00 3.95
460 1694 2.969443 AACTGCTCAAAATCCGAACG 57.031 45.000 0.00 0.00 0.00 3.95
461 1695 1.878953 ACTGCTCAAAATCCGAACGT 58.121 45.000 0.00 0.00 0.00 3.99
462 1696 2.218603 ACTGCTCAAAATCCGAACGTT 58.781 42.857 0.00 0.00 0.00 3.99
463 1697 2.223377 ACTGCTCAAAATCCGAACGTTC 59.777 45.455 18.47 18.47 0.00 3.95
475 1709 1.657094 CGAACGTTCGGGAGTTATTGG 59.343 52.381 36.53 9.59 46.30 3.16
476 1710 2.671914 CGAACGTTCGGGAGTTATTGGA 60.672 50.000 36.53 0.00 46.30 3.53
477 1711 3.528532 GAACGTTCGGGAGTTATTGGAT 58.471 45.455 13.36 0.00 0.00 3.41
478 1712 3.622166 ACGTTCGGGAGTTATTGGATT 57.378 42.857 0.00 0.00 0.00 3.01
479 1713 3.528532 ACGTTCGGGAGTTATTGGATTC 58.471 45.455 0.00 0.00 0.00 2.52
480 1714 2.870411 CGTTCGGGAGTTATTGGATTCC 59.130 50.000 0.00 0.00 0.00 3.01
481 1715 3.211865 GTTCGGGAGTTATTGGATTCCC 58.788 50.000 0.00 0.00 44.79 3.97
574 1808 4.651008 GTCGACAACCGCGGTGGA 62.651 66.667 38.72 25.53 42.00 4.02
575 1809 4.351938 TCGACAACCGCGGTGGAG 62.352 66.667 38.72 28.73 42.00 3.86
577 1811 4.681978 GACAACCGCGGTGGAGCT 62.682 66.667 38.72 17.54 42.00 4.09
578 1812 4.988598 ACAACCGCGGTGGAGCTG 62.989 66.667 38.72 29.73 42.00 4.24
644 1887 3.112075 CGTGCGTGCGTCATTCCT 61.112 61.111 0.00 0.00 0.00 3.36
687 1936 0.303493 CAAGGACACGGTGTTGAACG 59.697 55.000 15.94 0.08 0.00 3.95
695 1944 2.305127 GGTGTTGAACGGTCGGTCG 61.305 63.158 3.92 0.00 33.87 4.79
700 1949 2.149803 TTGAACGGTCGGTCGAGCAT 62.150 55.000 19.97 9.77 42.17 3.79
721 1970 1.068541 GGTCATTGAAACCCGAGTTGC 60.069 52.381 0.00 0.00 35.97 4.17
730 1979 2.170985 CCGAGTTGCAAGTTCGCG 59.829 61.111 21.66 14.78 33.25 5.87
736 1985 3.825160 TTGCAAGTTCGCGGGCTCT 62.825 57.895 6.13 0.00 33.35 4.09
740 1989 1.369625 CAAGTTCGCGGGCTCTATTT 58.630 50.000 6.13 0.00 0.00 1.40
757 2006 5.316167 TCTATTTTGCAACTCTGTGGACAT 58.684 37.500 0.00 0.00 0.00 3.06
771 2020 2.158841 GTGGACATAAATGAACACGCGT 59.841 45.455 5.58 5.58 32.16 6.01
806 2055 0.734889 CTCCGGTGCAATTGACCATC 59.265 55.000 20.14 6.96 32.45 3.51
818 2067 5.220815 GCAATTGACCATCTAGCTTCTTCAG 60.221 44.000 10.34 0.00 0.00 3.02
823 2116 3.037549 CCATCTAGCTTCTTCAGTCCCT 58.962 50.000 0.00 0.00 0.00 4.20
896 2189 3.057033 AGCAAGTTGGCAAGTTGATGATC 60.057 43.478 38.65 25.14 43.02 2.92
903 2196 4.858850 TGGCAAGTTGATGATCTGGTTAT 58.141 39.130 7.16 0.00 0.00 1.89
910 2203 5.105351 AGTTGATGATCTGGTTATGTCGACA 60.105 40.000 22.48 22.48 0.00 4.35
927 2220 1.499056 CAGTTCGCACTGCCATGTC 59.501 57.895 1.37 0.00 44.16 3.06
942 2235 4.309950 GTCCACCGGCGGTCAAGT 62.310 66.667 31.82 3.79 31.02 3.16
951 2244 1.079750 GCGGTCAAGTCAGTCTCCC 60.080 63.158 0.00 0.00 0.00 4.30
955 2248 0.899019 GTCAAGTCAGTCTCCCCTCC 59.101 60.000 0.00 0.00 0.00 4.30
961 2254 1.755008 CAGTCTCCCCTCCCGTCTC 60.755 68.421 0.00 0.00 0.00 3.36
969 2262 1.209747 CCCCTCCCGTCTCCTTAAAAG 59.790 57.143 0.00 0.00 0.00 2.27
973 2266 1.067354 TCCCGTCTCCTTAAAAGCGAC 60.067 52.381 0.00 0.00 0.00 5.19
993 2286 0.329596 GGAGGAGGTTGCCATTCACT 59.670 55.000 0.00 0.00 0.00 3.41
994 2287 1.680249 GGAGGAGGTTGCCATTCACTC 60.680 57.143 0.00 0.00 0.00 3.51
1021 2314 1.342474 TGGAGGAGTCTGGATCTCACC 60.342 57.143 0.00 0.00 34.04 4.02
1044 2337 0.815734 ACATCGTCCTCGTAACCCTG 59.184 55.000 0.00 0.00 38.33 4.45
1052 2345 3.387947 CGTAACCCTGGCCCTCGT 61.388 66.667 0.00 0.00 0.00 4.18
1053 2346 2.951101 CGTAACCCTGGCCCTCGTT 61.951 63.158 0.00 1.55 0.00 3.85
1097 2390 3.252484 CGCGTACCCGTTGCTAGC 61.252 66.667 8.10 8.10 36.15 3.42
1161 2454 3.390521 AACCTCGGCATCCTCGCA 61.391 61.111 0.00 0.00 0.00 5.10
1370 2663 2.229062 CCATCTACTACGATCCATGCGT 59.771 50.000 2.49 2.49 45.01 5.24
1530 2850 2.356553 GCGGCGTACAACTCCACA 60.357 61.111 9.37 0.00 0.00 4.17
1738 3062 6.371825 CAGCTACAGATACGAGATATACACCA 59.628 42.308 0.00 0.00 0.00 4.17
1749 3073 1.183030 TATACACCATCCTCGGCGGG 61.183 60.000 7.21 1.99 0.00 6.13
1846 3191 2.955402 GACGAGGTGAGCGTGAGT 59.045 61.111 0.00 0.00 42.77 3.41
1857 3202 1.450312 GCGTGAGTCCCATGGAAGG 60.450 63.158 15.22 0.00 31.38 3.46
1873 3218 3.084786 GGAAGGCTTGCTACTTGTTCAT 58.915 45.455 11.88 0.00 0.00 2.57
1891 3245 5.181811 TGTTCATCCTGTTGACATTAAGCAG 59.818 40.000 0.00 0.00 0.00 4.24
1892 3246 3.691118 TCATCCTGTTGACATTAAGCAGC 59.309 43.478 0.00 0.00 0.00 5.25
1932 3286 8.435931 TTCAATATCTAAATAGCTAGCCCTCA 57.564 34.615 12.13 0.00 0.00 3.86
1939 3293 7.524290 TCTAAATAGCTAGCCCTCACTAACTA 58.476 38.462 12.13 0.00 0.00 2.24
1947 3301 6.183360 GCTAGCCCTCACTAACTATTTCTCTT 60.183 42.308 2.29 0.00 0.00 2.85
1961 3315 8.737168 ACTATTTCTCTTAACATGCAAGCATA 57.263 30.769 7.29 0.00 34.91 3.14
1971 3325 1.085893 TGCAAGCATACCACGTCATG 58.914 50.000 0.00 0.00 0.00 3.07
1995 3349 5.615495 CATAACATGCATGAGAAAAAGCG 57.385 39.130 32.75 2.55 0.00 4.68
1998 3352 1.652124 CATGCATGAGAAAAAGCGCAC 59.348 47.619 22.59 0.00 31.22 5.34
2007 3361 1.197036 GAAAAAGCGCACCCTCACTAC 59.803 52.381 11.47 0.00 0.00 2.73
2029 3383 8.046708 ACTACCATATGTCTCTTAACATGCAAA 58.953 33.333 1.24 0.00 40.08 3.68
2030 3384 7.701539 ACCATATGTCTCTTAACATGCAAAA 57.298 32.000 1.24 0.00 40.08 2.44
2031 3385 8.121305 ACCATATGTCTCTTAACATGCAAAAA 57.879 30.769 1.24 0.00 40.08 1.94
2052 3406 4.959596 AAGTCACTTCATCATGACATGC 57.040 40.909 10.76 0.00 46.34 4.06
2055 3409 4.948004 AGTCACTTCATCATGACATGCATT 59.052 37.500 10.76 0.00 46.34 3.56
2061 3415 8.592155 CACTTCATCATGACATGCATTAAAAAG 58.408 33.333 10.76 8.99 34.15 2.27
2063 3417 9.361315 CTTCATCATGACATGCATTAAAAAGAA 57.639 29.630 10.76 0.48 34.15 2.52
2064 3418 9.708092 TTCATCATGACATGCATTAAAAAGAAA 57.292 25.926 10.76 0.00 34.15 2.52
2065 3419 9.708092 TCATCATGACATGCATTAAAAAGAAAA 57.292 25.926 10.76 0.00 34.15 2.29
2085 3440 6.817641 AGAAAAATCTCAACATGCAAACACAA 59.182 30.769 0.00 0.00 0.00 3.33
2113 3468 9.060347 TGAGAGTTTTCATTCTATTATGCCATC 57.940 33.333 0.00 0.00 0.00 3.51
2267 3623 9.168353 GTTTAAAATATTTCCGTAACAACGTGT 57.832 29.630 0.10 0.00 0.00 4.49
2268 3624 8.710918 TTAAAATATTTCCGTAACAACGTGTG 57.289 30.769 0.10 0.00 0.00 3.82
2275 3631 2.919229 CCGTAACAACGTGTGAGGTATC 59.081 50.000 0.00 0.00 0.00 2.24
2276 3632 3.567530 CGTAACAACGTGTGAGGTATCA 58.432 45.455 0.00 0.00 0.00 2.15
2277 3633 4.171005 CGTAACAACGTGTGAGGTATCAT 58.829 43.478 0.00 0.00 37.87 2.45
2279 3635 4.537135 AACAACGTGTGAGGTATCATCT 57.463 40.909 0.00 0.00 37.87 2.90
2281 3637 5.250235 ACAACGTGTGAGGTATCATCTAG 57.750 43.478 0.00 0.00 37.87 2.43
2282 3638 4.705507 ACAACGTGTGAGGTATCATCTAGT 59.294 41.667 0.00 0.00 37.87 2.57
2283 3639 5.884232 ACAACGTGTGAGGTATCATCTAGTA 59.116 40.000 0.00 0.00 37.87 1.82
2284 3640 6.546403 ACAACGTGTGAGGTATCATCTAGTAT 59.454 38.462 0.00 0.00 37.87 2.12
2285 3641 7.068348 ACAACGTGTGAGGTATCATCTAGTATT 59.932 37.037 0.00 0.00 37.87 1.89
2286 3642 7.584122 ACGTGTGAGGTATCATCTAGTATTT 57.416 36.000 0.00 0.00 37.87 1.40
2287 3643 8.008513 ACGTGTGAGGTATCATCTAGTATTTT 57.991 34.615 0.00 0.00 37.87 1.82
2288 3644 8.136165 ACGTGTGAGGTATCATCTAGTATTTTC 58.864 37.037 0.00 0.00 37.87 2.29
2289 3645 8.135529 CGTGTGAGGTATCATCTAGTATTTTCA 58.864 37.037 0.00 0.00 37.87 2.69
2290 3646 9.817809 GTGTGAGGTATCATCTAGTATTTTCAA 57.182 33.333 0.00 0.00 37.87 2.69
2296 3652 8.926710 GGTATCATCTAGTATTTTCAATGGACG 58.073 37.037 0.00 0.00 0.00 4.79
2297 3653 7.969536 ATCATCTAGTATTTTCAATGGACGG 57.030 36.000 0.00 0.00 0.00 4.79
2298 3654 6.884832 TCATCTAGTATTTTCAATGGACGGT 58.115 36.000 0.00 0.00 0.00 4.83
2299 3655 8.014070 TCATCTAGTATTTTCAATGGACGGTA 57.986 34.615 0.00 0.00 0.00 4.02
2300 3656 8.141909 TCATCTAGTATTTTCAATGGACGGTAG 58.858 37.037 0.00 0.00 0.00 3.18
2301 3657 7.649533 TCTAGTATTTTCAATGGACGGTAGA 57.350 36.000 0.00 0.00 0.00 2.59
2302 3658 8.070034 TCTAGTATTTTCAATGGACGGTAGAA 57.930 34.615 0.00 0.00 0.00 2.10
2335 3691 5.366460 AGCACTAGATGATGTTGAATGGAG 58.634 41.667 0.00 0.00 0.00 3.86
2341 3697 9.739276 ACTAGATGATGTTGAATGGAGTTTTTA 57.261 29.630 0.00 0.00 0.00 1.52
2343 3699 8.641498 AGATGATGTTGAATGGAGTTTTTAGT 57.359 30.769 0.00 0.00 0.00 2.24
2344 3700 8.734386 AGATGATGTTGAATGGAGTTTTTAGTC 58.266 33.333 0.00 0.00 0.00 2.59
2345 3701 8.641498 ATGATGTTGAATGGAGTTTTTAGTCT 57.359 30.769 0.00 0.00 0.00 3.24
2346 3702 9.739276 ATGATGTTGAATGGAGTTTTTAGTCTA 57.261 29.630 0.00 0.00 0.00 2.59
2429 3793 4.991056 GCGCCATCTTTCTCAGAATACATA 59.009 41.667 0.00 0.00 34.16 2.29
2430 3794 5.641209 GCGCCATCTTTCTCAGAATACATAT 59.359 40.000 0.00 0.00 34.16 1.78
2431 3795 6.183360 GCGCCATCTTTCTCAGAATACATATC 60.183 42.308 0.00 0.00 34.16 1.63
2432 3796 7.095910 CGCCATCTTTCTCAGAATACATATCT 58.904 38.462 0.00 0.00 34.16 1.98
2509 3873 4.928661 AGTTGTTCTAGCAATTACGCTG 57.071 40.909 0.68 0.00 43.68 5.18
2515 3879 2.956333 TCTAGCAATTACGCTGCCTCTA 59.044 45.455 0.68 0.00 43.68 2.43
2567 3931 4.720649 TGTCTCTGTTATTCGAGGAAGG 57.279 45.455 0.00 0.00 0.00 3.46
2607 3971 1.873591 CAGTGAGCAACCACCTTGTAC 59.126 52.381 0.00 0.00 37.76 2.90
2627 3991 7.599630 TGTACGTTGTCTTACACTTCTTTTT 57.400 32.000 0.00 0.00 0.00 1.94
2697 4063 8.989980 GTCACTTAGATGTGTAATATTTAGGGC 58.010 37.037 0.00 0.00 38.90 5.19
2781 4147 5.648092 GGTCCTGAAACATATATATGGTGCC 59.352 44.000 23.44 14.52 38.00 5.01
2851 4217 3.704566 TCGGCTAATAGTGAGGACATTGT 59.295 43.478 0.00 0.00 0.00 2.71
2854 4220 6.046593 CGGCTAATAGTGAGGACATTGTAAA 58.953 40.000 0.00 0.00 0.00 2.01
2880 4246 4.795268 TGATTCACTTATCGCCGATCTAC 58.205 43.478 1.25 0.00 0.00 2.59
2934 4300 2.031437 GCTGCGAATAAGCTTGGAGAAG 59.969 50.000 9.86 3.08 37.69 2.85
2968 4334 5.758784 GTGCAGTTTATAAGGTACTCCATCC 59.241 44.000 0.00 0.00 38.49 3.51
3337 4711 0.322975 GGCTCTCCAGAAGTTCAGCA 59.677 55.000 12.60 0.00 0.00 4.41
3364 4738 5.664908 AGGAATAGGAGAGCTCAAGAATGAA 59.335 40.000 17.77 0.00 34.49 2.57
3430 4804 1.231296 TTGGCGTATGCGTGCAAGAA 61.231 50.000 2.99 0.00 44.10 2.52
3433 4807 0.789383 GCGTATGCGTGCAAGAACAC 60.789 55.000 2.99 0.00 40.81 3.32
3448 4822 0.663153 AACACGAGAAACTGCTTGCC 59.337 50.000 0.00 0.00 0.00 4.52
3472 4846 6.262273 CCTACGAATACATGCCCAATAAAAGT 59.738 38.462 0.00 0.00 0.00 2.66
3595 5030 0.829333 TGCCAGATCCAGAGAGAAGC 59.171 55.000 0.00 0.00 0.00 3.86
3622 5057 3.454082 AGCTAGACTGGGGAAAGAGATTG 59.546 47.826 0.00 0.00 0.00 2.67
3626 5061 3.265479 AGACTGGGGAAAGAGATTGAAGG 59.735 47.826 0.00 0.00 0.00 3.46
3850 5285 4.188462 GGTTCGATTGGTGTGATGATACA 58.812 43.478 0.00 0.00 0.00 2.29
4045 5480 2.673862 TCGACGAGTCTGTCAATCTCTC 59.326 50.000 13.13 0.00 38.84 3.20
4057 5492 6.267699 TCTGTCAATCTCTCAAGTCTGGTAAA 59.732 38.462 0.00 0.00 0.00 2.01
4072 5507 5.427806 GTCTGGTAAATTCCCTACTTACCCT 59.572 44.000 7.56 0.00 42.60 4.34
4207 5730 0.849094 ATGCCCCAGGAAACCAGGTA 60.849 55.000 0.00 0.00 0.00 3.08
4324 5847 1.331138 GTGTCTCTACGGTCTCCATCG 59.669 57.143 0.00 0.00 0.00 3.84
4345 5868 3.703420 GAAGCCATCATTTCTCATGTGC 58.297 45.455 0.00 0.00 0.00 4.57
4363 5886 2.093235 GTGCATGAGCCCTACTTCTTCT 60.093 50.000 0.00 0.00 41.13 2.85
4366 5889 3.740764 GCATGAGCCCTACTTCTTCTGAG 60.741 52.174 0.00 0.00 33.58 3.35
4373 5896 2.424246 CCTACTTCTTCTGAGTCGACCC 59.576 54.545 13.01 0.00 0.00 4.46
4416 5939 3.504863 CAAATGAAGCTTCAATCACGGG 58.495 45.455 31.55 13.68 41.13 5.28
4444 5967 4.038271 ACCAAGATGAGCAAAAGGATGA 57.962 40.909 0.00 0.00 0.00 2.92
4447 5970 4.219070 CCAAGATGAGCAAAAGGATGACAA 59.781 41.667 0.00 0.00 0.00 3.18
4595 6118 9.796120 TTTGTAGTTTTGATAAGTTTGGAACAG 57.204 29.630 0.00 0.00 42.39 3.16
4827 6352 4.041567 TCCTGACCATAGACATGTGTTGTT 59.958 41.667 1.15 0.00 39.18 2.83
4902 6429 7.341256 CCCATCCATTAGCTTAGCATAATGATT 59.659 37.037 24.26 14.87 40.34 2.57
4951 6478 7.445121 TCATCATGACTTATACATGTTCCTCC 58.555 38.462 2.30 0.00 43.56 4.30
4973 6500 5.536538 TCCGACTATGAGATTATGCAACTCT 59.463 40.000 0.00 0.00 0.00 3.24
4985 6512 1.754803 TGCAACTCTCGAATACCGGAT 59.245 47.619 9.46 0.00 39.14 4.18
5015 6542 3.398406 TGTGTGCTATCAAACGTCACAT 58.602 40.909 7.18 0.00 39.45 3.21
5046 6573 8.099537 ACTGGGTGATTATAAAGATGCTCTATG 58.900 37.037 0.00 0.00 0.00 2.23
5111 6638 6.553953 TTAGGATTTGCCACTCTGTGTATA 57.446 37.500 0.00 0.00 40.02 1.47
5196 6723 6.388435 ACTAATGAGTTAGTCACGGGATAC 57.612 41.667 0.00 0.00 45.70 2.24
5197 6724 5.008415 ACTAATGAGTTAGTCACGGGATACG 59.992 44.000 0.00 0.00 45.70 3.06
5198 6725 5.562307 CTAATGAGTTAGTCACGGGATACGG 60.562 48.000 0.00 0.00 38.28 4.02
5212 6739 3.307410 GGGATACGGGATGATGCATTACA 60.307 47.826 0.00 0.00 37.60 2.41
5417 6945 7.356396 GGTTATTGACCGGAGATGTGTCTCA 62.356 48.000 9.46 0.00 44.56 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.349488 TGCATACTATGTCGGAAGTCG 57.651 47.619 0.00 0.00 40.90 4.18
21 22 4.621034 TGTCGCAATATGCATACTATGTCG 59.379 41.667 8.99 14.59 45.36 4.35
22 23 5.443301 CGTGTCGCAATATGCATACTATGTC 60.443 44.000 8.99 4.89 45.36 3.06
23 24 4.385748 CGTGTCGCAATATGCATACTATGT 59.614 41.667 8.99 0.00 45.36 2.29
24 25 4.385748 ACGTGTCGCAATATGCATACTATG 59.614 41.667 8.99 9.77 45.36 2.23
25 26 4.556233 ACGTGTCGCAATATGCATACTAT 58.444 39.130 8.99 0.00 45.36 2.12
26 27 3.972403 ACGTGTCGCAATATGCATACTA 58.028 40.909 8.99 0.00 45.36 1.82
27 28 2.794910 GACGTGTCGCAATATGCATACT 59.205 45.455 8.99 0.00 45.36 2.12
28 29 2.096909 GGACGTGTCGCAATATGCATAC 60.097 50.000 8.99 0.00 45.36 2.39
36 37 2.890808 ATAGATGGACGTGTCGCAAT 57.109 45.000 0.00 0.00 0.00 3.56
40 41 4.383052 GCTGATAAATAGATGGACGTGTCG 59.617 45.833 0.00 0.00 0.00 4.35
44 45 5.552870 AAGGCTGATAAATAGATGGACGT 57.447 39.130 0.00 0.00 0.00 4.34
50 51 9.003658 CGGTGAATAAAAGGCTGATAAATAGAT 57.996 33.333 0.00 0.00 0.00 1.98
51 52 8.208224 TCGGTGAATAAAAGGCTGATAAATAGA 58.792 33.333 0.00 0.00 0.00 1.98
53 54 8.208224 TCTCGGTGAATAAAAGGCTGATAAATA 58.792 33.333 0.00 0.00 0.00 1.40
101 102 9.709600 GAAGTTGTTTTTGTTTCTTTTGACAAA 57.290 25.926 0.00 0.00 42.23 2.83
111 112 7.774224 AAAAATGCGAAGTTGTTTTTGTTTC 57.226 28.000 0.00 0.00 33.81 2.78
137 268 0.323302 TGTGCGGCCAGATAAACTCA 59.677 50.000 2.24 0.00 0.00 3.41
138 269 1.448985 TTGTGCGGCCAGATAAACTC 58.551 50.000 2.24 0.00 0.00 3.01
140 271 2.939460 AATTGTGCGGCCAGATAAAC 57.061 45.000 2.24 0.00 0.00 2.01
142 273 3.951775 AAAAATTGTGCGGCCAGATAA 57.048 38.095 2.24 0.00 0.00 1.75
167 298 3.726517 CTGAAACCACCTGCGGCG 61.727 66.667 0.51 0.51 0.00 6.46
168 299 3.365265 CCTGAAACCACCTGCGGC 61.365 66.667 0.00 0.00 0.00 6.53
169 300 0.821711 TTTCCTGAAACCACCTGCGG 60.822 55.000 0.00 0.00 0.00 5.69
170 301 0.593128 CTTTCCTGAAACCACCTGCG 59.407 55.000 0.00 0.00 0.00 5.18
171 302 0.961753 CCTTTCCTGAAACCACCTGC 59.038 55.000 0.00 0.00 0.00 4.85
172 303 1.133482 ACCCTTTCCTGAAACCACCTG 60.133 52.381 0.00 0.00 0.00 4.00
173 304 1.145119 GACCCTTTCCTGAAACCACCT 59.855 52.381 0.00 0.00 0.00 4.00
175 306 2.358322 TGACCCTTTCCTGAAACCAC 57.642 50.000 0.00 0.00 0.00 4.16
176 307 3.611025 ATTGACCCTTTCCTGAAACCA 57.389 42.857 0.00 0.00 0.00 3.67
177 308 6.318900 CAGTATATTGACCCTTTCCTGAAACC 59.681 42.308 0.00 0.00 0.00 3.27
178 309 6.318900 CCAGTATATTGACCCTTTCCTGAAAC 59.681 42.308 0.00 0.00 0.00 2.78
179 310 6.423182 CCAGTATATTGACCCTTTCCTGAAA 58.577 40.000 0.00 0.00 0.00 2.69
186 1420 2.508300 ACGGCCAGTATATTGACCCTTT 59.492 45.455 2.24 0.00 0.00 3.11
236 1470 0.389948 GCCTGGACTAACCACGTCAG 60.390 60.000 0.00 0.00 44.64 3.51
247 1481 1.420138 CCGTTATTATGGGCCTGGACT 59.580 52.381 4.53 0.00 0.00 3.85
248 1482 1.142262 ACCGTTATTATGGGCCTGGAC 59.858 52.381 4.53 0.00 34.49 4.02
266 1500 5.996669 AACGTTCGGGAATTATCATTACC 57.003 39.130 0.00 0.00 39.88 2.85
267 1501 6.037391 TCCAAACGTTCGGGAATTATCATTAC 59.963 38.462 16.71 0.00 0.00 1.89
268 1502 6.114089 TCCAAACGTTCGGGAATTATCATTA 58.886 36.000 16.71 0.00 0.00 1.90
269 1503 4.944930 TCCAAACGTTCGGGAATTATCATT 59.055 37.500 16.71 0.00 0.00 2.57
270 1504 4.519213 TCCAAACGTTCGGGAATTATCAT 58.481 39.130 16.71 0.00 0.00 2.45
271 1505 3.940319 TCCAAACGTTCGGGAATTATCA 58.060 40.909 16.71 0.00 0.00 2.15
272 1506 5.494632 AATCCAAACGTTCGGGAATTATC 57.505 39.130 21.22 0.00 33.73 1.75
273 1507 5.907866 AAATCCAAACGTTCGGGAATTAT 57.092 34.783 21.22 6.41 33.73 1.28
274 1508 6.623331 GCTTAAATCCAAACGTTCGGGAATTA 60.623 38.462 21.22 19.67 33.73 1.40
275 1509 5.705902 CTTAAATCCAAACGTTCGGGAATT 58.294 37.500 21.22 20.48 33.73 2.17
276 1510 4.380128 GCTTAAATCCAAACGTTCGGGAAT 60.380 41.667 21.22 13.04 33.73 3.01
277 1511 3.058085 GCTTAAATCCAAACGTTCGGGAA 60.058 43.478 21.22 6.71 33.73 3.97
278 1512 2.485038 GCTTAAATCCAAACGTTCGGGA 59.515 45.455 20.07 20.07 34.70 5.14
279 1513 2.226912 TGCTTAAATCCAAACGTTCGGG 59.773 45.455 5.22 8.97 0.00 5.14
280 1514 3.546002 TGCTTAAATCCAAACGTTCGG 57.454 42.857 0.00 0.00 0.00 4.30
281 1515 3.851403 CCATGCTTAAATCCAAACGTTCG 59.149 43.478 0.00 0.00 0.00 3.95
282 1516 4.805219 ACCATGCTTAAATCCAAACGTTC 58.195 39.130 0.00 0.00 0.00 3.95
283 1517 4.864704 ACCATGCTTAAATCCAAACGTT 57.135 36.364 0.00 0.00 0.00 3.99
284 1518 5.336134 GGTTACCATGCTTAAATCCAAACGT 60.336 40.000 0.00 0.00 0.00 3.99
285 1519 5.099575 GGTTACCATGCTTAAATCCAAACG 58.900 41.667 0.00 0.00 0.00 3.60
286 1520 5.416083 GGGTTACCATGCTTAAATCCAAAC 58.584 41.667 2.98 0.00 36.50 2.93
287 1521 4.158764 CGGGTTACCATGCTTAAATCCAAA 59.841 41.667 2.98 0.00 36.13 3.28
288 1522 3.697045 CGGGTTACCATGCTTAAATCCAA 59.303 43.478 2.98 0.00 36.13 3.53
289 1523 3.054287 TCGGGTTACCATGCTTAAATCCA 60.054 43.478 2.98 0.00 36.13 3.41
290 1524 3.547746 TCGGGTTACCATGCTTAAATCC 58.452 45.455 2.98 0.00 36.13 3.01
291 1525 4.495184 CGTTCGGGTTACCATGCTTAAATC 60.495 45.833 2.98 0.00 36.13 2.17
292 1526 3.375922 CGTTCGGGTTACCATGCTTAAAT 59.624 43.478 2.98 0.00 36.13 1.40
293 1527 2.743126 CGTTCGGGTTACCATGCTTAAA 59.257 45.455 2.98 0.00 36.13 1.52
294 1528 2.289569 ACGTTCGGGTTACCATGCTTAA 60.290 45.455 2.98 0.00 36.13 1.85
295 1529 1.275856 ACGTTCGGGTTACCATGCTTA 59.724 47.619 2.98 0.00 36.13 3.09
296 1530 0.035739 ACGTTCGGGTTACCATGCTT 59.964 50.000 2.98 0.00 36.13 3.91
297 1531 0.035739 AACGTTCGGGTTACCATGCT 59.964 50.000 2.98 0.00 36.13 3.79
298 1532 0.876399 AAACGTTCGGGTTACCATGC 59.124 50.000 0.00 0.00 36.13 4.06
299 1533 3.125658 CCTAAAACGTTCGGGTTACCATG 59.874 47.826 0.00 0.00 36.13 3.66
300 1534 3.244526 ACCTAAAACGTTCGGGTTACCAT 60.245 43.478 0.00 0.00 36.13 3.55
301 1535 2.103941 ACCTAAAACGTTCGGGTTACCA 59.896 45.455 0.00 0.00 36.13 3.25
302 1536 2.480037 CACCTAAAACGTTCGGGTTACC 59.520 50.000 14.36 0.00 0.00 2.85
303 1537 2.480037 CCACCTAAAACGTTCGGGTTAC 59.520 50.000 14.36 0.00 0.00 2.50
304 1538 2.765122 CCACCTAAAACGTTCGGGTTA 58.235 47.619 14.36 4.08 0.00 2.85
305 1539 1.596603 CCACCTAAAACGTTCGGGTT 58.403 50.000 14.36 3.16 0.00 4.11
306 1540 0.886043 GCCACCTAAAACGTTCGGGT 60.886 55.000 0.00 7.60 0.00 5.28
307 1541 0.885596 TGCCACCTAAAACGTTCGGG 60.886 55.000 0.00 6.92 0.00 5.14
308 1542 0.945813 TTGCCACCTAAAACGTTCGG 59.054 50.000 0.00 5.45 0.00 4.30
309 1543 2.759538 TTTGCCACCTAAAACGTTCG 57.240 45.000 0.00 0.00 0.00 3.95
310 1544 6.210796 ACTAAATTTGCCACCTAAAACGTTC 58.789 36.000 0.00 0.00 0.00 3.95
311 1545 6.151663 ACTAAATTTGCCACCTAAAACGTT 57.848 33.333 0.00 0.00 0.00 3.99
312 1546 5.777850 ACTAAATTTGCCACCTAAAACGT 57.222 34.783 0.00 0.00 0.00 3.99
313 1547 6.872608 CAAACTAAATTTGCCACCTAAAACG 58.127 36.000 0.00 0.00 41.30 3.60
326 1560 7.681939 TCCTAATCTCACGCAAACTAAATTT 57.318 32.000 0.00 0.00 0.00 1.82
327 1561 7.681939 TTCCTAATCTCACGCAAACTAAATT 57.318 32.000 0.00 0.00 0.00 1.82
328 1562 7.681939 TTTCCTAATCTCACGCAAACTAAAT 57.318 32.000 0.00 0.00 0.00 1.40
329 1563 7.012515 TGTTTTCCTAATCTCACGCAAACTAAA 59.987 33.333 0.00 0.00 0.00 1.85
330 1564 6.483974 TGTTTTCCTAATCTCACGCAAACTAA 59.516 34.615 0.00 0.00 0.00 2.24
331 1565 5.992829 TGTTTTCCTAATCTCACGCAAACTA 59.007 36.000 0.00 0.00 0.00 2.24
332 1566 4.819630 TGTTTTCCTAATCTCACGCAAACT 59.180 37.500 0.00 0.00 0.00 2.66
333 1567 5.103290 TGTTTTCCTAATCTCACGCAAAC 57.897 39.130 0.00 0.00 0.00 2.93
334 1568 5.335583 CCATGTTTTCCTAATCTCACGCAAA 60.336 40.000 0.00 0.00 0.00 3.68
335 1569 4.155826 CCATGTTTTCCTAATCTCACGCAA 59.844 41.667 0.00 0.00 0.00 4.85
336 1570 3.689161 CCATGTTTTCCTAATCTCACGCA 59.311 43.478 0.00 0.00 0.00 5.24
337 1571 3.487544 GCCATGTTTTCCTAATCTCACGC 60.488 47.826 0.00 0.00 0.00 5.34
338 1572 3.689161 TGCCATGTTTTCCTAATCTCACG 59.311 43.478 0.00 0.00 0.00 4.35
339 1573 5.643379 TTGCCATGTTTTCCTAATCTCAC 57.357 39.130 0.00 0.00 0.00 3.51
340 1574 6.855763 AATTGCCATGTTTTCCTAATCTCA 57.144 33.333 0.00 0.00 0.00 3.27
341 1575 8.037166 AGAAAATTGCCATGTTTTCCTAATCTC 58.963 33.333 12.96 0.00 42.45 2.75
342 1576 7.820872 CAGAAAATTGCCATGTTTTCCTAATCT 59.179 33.333 12.96 0.00 42.45 2.40
343 1577 7.818930 TCAGAAAATTGCCATGTTTTCCTAATC 59.181 33.333 12.96 0.00 42.45 1.75
344 1578 7.678837 TCAGAAAATTGCCATGTTTTCCTAAT 58.321 30.769 12.96 0.00 42.45 1.73
345 1579 7.060383 TCAGAAAATTGCCATGTTTTCCTAA 57.940 32.000 12.96 1.09 42.45 2.69
346 1580 6.662865 TCAGAAAATTGCCATGTTTTCCTA 57.337 33.333 12.96 2.91 42.45 2.94
347 1581 5.549742 TCAGAAAATTGCCATGTTTTCCT 57.450 34.783 12.96 2.45 42.45 3.36
348 1582 7.903995 TTATCAGAAAATTGCCATGTTTTCC 57.096 32.000 12.96 0.73 42.45 3.13
373 1607 5.414454 GGCAACTTTCTCCTTTTTGGTTTTT 59.586 36.000 0.00 0.00 37.07 1.94
374 1608 4.941263 GGCAACTTTCTCCTTTTTGGTTTT 59.059 37.500 0.00 0.00 37.07 2.43
375 1609 4.019771 TGGCAACTTTCTCCTTTTTGGTTT 60.020 37.500 0.00 0.00 35.38 3.27
376 1610 3.517500 TGGCAACTTTCTCCTTTTTGGTT 59.482 39.130 0.00 0.00 35.38 3.67
377 1611 3.103742 TGGCAACTTTCTCCTTTTTGGT 58.896 40.909 0.00 0.00 35.38 3.67
378 1612 3.817709 TGGCAACTTTCTCCTTTTTGG 57.182 42.857 0.00 0.00 37.61 3.28
379 1613 4.309933 GGATGGCAACTTTCTCCTTTTTG 58.690 43.478 0.00 0.00 37.61 2.44
380 1614 3.324846 GGGATGGCAACTTTCTCCTTTTT 59.675 43.478 0.00 0.00 37.61 1.94
381 1615 2.899900 GGGATGGCAACTTTCTCCTTTT 59.100 45.455 0.00 0.00 37.61 2.27
382 1616 2.110721 AGGGATGGCAACTTTCTCCTTT 59.889 45.455 0.00 0.00 37.61 3.11
383 1617 1.713078 AGGGATGGCAACTTTCTCCTT 59.287 47.619 0.00 0.00 37.61 3.36
384 1618 1.376649 AGGGATGGCAACTTTCTCCT 58.623 50.000 0.00 0.00 37.61 3.69
385 1619 2.222227 AAGGGATGGCAACTTTCTCC 57.778 50.000 0.00 0.00 37.61 3.71
386 1620 2.678336 CGTAAGGGATGGCAACTTTCTC 59.322 50.000 7.58 0.00 37.61 2.87
387 1621 2.304761 TCGTAAGGGATGGCAACTTTCT 59.695 45.455 7.58 0.00 38.47 2.52
388 1622 2.706890 TCGTAAGGGATGGCAACTTTC 58.293 47.619 7.58 3.11 38.47 2.62
389 1623 2.817844 GTTCGTAAGGGATGGCAACTTT 59.182 45.455 7.58 2.21 38.47 2.66
390 1624 2.039879 AGTTCGTAAGGGATGGCAACTT 59.960 45.455 0.00 0.00 38.47 2.66
391 1625 1.628846 AGTTCGTAAGGGATGGCAACT 59.371 47.619 0.00 0.00 38.47 3.16
392 1626 2.109425 AGTTCGTAAGGGATGGCAAC 57.891 50.000 0.00 0.00 38.47 4.17
393 1627 3.985019 TTAGTTCGTAAGGGATGGCAA 57.015 42.857 0.00 0.00 38.47 4.52
394 1628 3.262405 ACTTTAGTTCGTAAGGGATGGCA 59.738 43.478 0.00 0.00 38.47 4.92
395 1629 3.870274 ACTTTAGTTCGTAAGGGATGGC 58.130 45.455 0.00 0.00 38.47 4.40
396 1630 5.814188 GGTAACTTTAGTTCGTAAGGGATGG 59.186 44.000 0.00 0.00 39.31 3.51
397 1631 6.400568 TGGTAACTTTAGTTCGTAAGGGATG 58.599 40.000 0.00 0.00 39.31 3.51
398 1632 6.610075 TGGTAACTTTAGTTCGTAAGGGAT 57.390 37.500 0.00 0.00 39.31 3.85
399 1633 6.014327 ACATGGTAACTTTAGTTCGTAAGGGA 60.014 38.462 0.00 0.00 39.31 4.20
400 1634 6.168389 ACATGGTAACTTTAGTTCGTAAGGG 58.832 40.000 0.00 0.00 39.31 3.95
401 1635 8.761575 TTACATGGTAACTTTAGTTCGTAAGG 57.238 34.615 0.00 0.00 39.31 2.69
405 1639 8.063630 CGTTTTTACATGGTAACTTTAGTTCGT 58.936 33.333 0.00 0.00 39.31 3.85
406 1640 8.063630 ACGTTTTTACATGGTAACTTTAGTTCG 58.936 33.333 0.00 0.00 39.31 3.95
407 1641 9.720667 AACGTTTTTACATGGTAACTTTAGTTC 57.279 29.630 0.00 0.00 39.31 3.01
408 1642 9.720667 GAACGTTTTTACATGGTAACTTTAGTT 57.279 29.630 0.46 0.29 41.73 2.24
409 1643 8.891720 TGAACGTTTTTACATGGTAACTTTAGT 58.108 29.630 0.46 0.00 37.61 2.24
410 1644 9.719279 TTGAACGTTTTTACATGGTAACTTTAG 57.281 29.630 0.46 0.00 37.61 1.85
411 1645 9.719279 CTTGAACGTTTTTACATGGTAACTTTA 57.281 29.630 0.46 0.00 37.61 1.85
412 1646 8.460428 TCTTGAACGTTTTTACATGGTAACTTT 58.540 29.630 0.46 0.00 37.61 2.66
413 1647 7.911727 GTCTTGAACGTTTTTACATGGTAACTT 59.088 33.333 0.46 0.00 37.61 2.66
414 1648 7.066043 TGTCTTGAACGTTTTTACATGGTAACT 59.934 33.333 0.46 0.00 37.61 2.24
415 1649 7.188157 TGTCTTGAACGTTTTTACATGGTAAC 58.812 34.615 0.46 0.00 0.00 2.50
416 1650 7.317842 TGTCTTGAACGTTTTTACATGGTAA 57.682 32.000 0.46 0.00 0.00 2.85
417 1651 6.922247 TGTCTTGAACGTTTTTACATGGTA 57.078 33.333 0.46 0.00 0.00 3.25
418 1652 5.821516 TGTCTTGAACGTTTTTACATGGT 57.178 34.783 0.46 0.00 0.00 3.55
419 1653 6.750039 AGTTTGTCTTGAACGTTTTTACATGG 59.250 34.615 0.46 0.00 32.38 3.66
420 1654 7.600039 CAGTTTGTCTTGAACGTTTTTACATG 58.400 34.615 0.46 0.00 32.38 3.21
421 1655 6.252655 GCAGTTTGTCTTGAACGTTTTTACAT 59.747 34.615 0.46 0.00 32.38 2.29
422 1656 5.569823 GCAGTTTGTCTTGAACGTTTTTACA 59.430 36.000 0.46 2.44 32.38 2.41
423 1657 5.798434 AGCAGTTTGTCTTGAACGTTTTTAC 59.202 36.000 0.46 0.00 32.38 2.01
424 1658 5.945155 AGCAGTTTGTCTTGAACGTTTTTA 58.055 33.333 0.46 0.00 32.38 1.52
425 1659 4.805219 AGCAGTTTGTCTTGAACGTTTTT 58.195 34.783 0.46 0.00 32.38 1.94
426 1660 4.083003 TGAGCAGTTTGTCTTGAACGTTTT 60.083 37.500 0.46 0.00 32.38 2.43
427 1661 3.438781 TGAGCAGTTTGTCTTGAACGTTT 59.561 39.130 0.46 0.00 32.38 3.60
428 1662 3.006940 TGAGCAGTTTGTCTTGAACGTT 58.993 40.909 0.00 0.00 32.38 3.99
429 1663 2.627945 TGAGCAGTTTGTCTTGAACGT 58.372 42.857 0.00 0.00 32.38 3.99
430 1664 3.673746 TTGAGCAGTTTGTCTTGAACG 57.326 42.857 0.00 0.00 32.38 3.95
431 1665 5.460091 GGATTTTGAGCAGTTTGTCTTGAAC 59.540 40.000 0.00 0.00 0.00 3.18
432 1666 5.591099 GGATTTTGAGCAGTTTGTCTTGAA 58.409 37.500 0.00 0.00 0.00 2.69
433 1667 4.261155 CGGATTTTGAGCAGTTTGTCTTGA 60.261 41.667 0.00 0.00 0.00 3.02
434 1668 3.976942 CGGATTTTGAGCAGTTTGTCTTG 59.023 43.478 0.00 0.00 0.00 3.02
435 1669 3.882888 TCGGATTTTGAGCAGTTTGTCTT 59.117 39.130 0.00 0.00 0.00 3.01
436 1670 3.476552 TCGGATTTTGAGCAGTTTGTCT 58.523 40.909 0.00 0.00 0.00 3.41
437 1671 3.896648 TCGGATTTTGAGCAGTTTGTC 57.103 42.857 0.00 0.00 0.00 3.18
438 1672 3.548014 CGTTCGGATTTTGAGCAGTTTGT 60.548 43.478 0.00 0.00 0.00 2.83
439 1673 2.973224 CGTTCGGATTTTGAGCAGTTTG 59.027 45.455 0.00 0.00 0.00 2.93
440 1674 2.616842 ACGTTCGGATTTTGAGCAGTTT 59.383 40.909 0.00 0.00 0.00 2.66
441 1675 2.218603 ACGTTCGGATTTTGAGCAGTT 58.781 42.857 0.00 0.00 0.00 3.16
442 1676 1.878953 ACGTTCGGATTTTGAGCAGT 58.121 45.000 0.00 0.00 0.00 4.40
443 1677 2.721797 CGAACGTTCGGATTTTGAGCAG 60.722 50.000 36.53 9.39 46.30 4.24
444 1678 1.193650 CGAACGTTCGGATTTTGAGCA 59.806 47.619 36.53 0.00 46.30 4.26
445 1679 1.865725 CGAACGTTCGGATTTTGAGC 58.134 50.000 36.53 4.05 46.30 4.26
456 1690 2.963432 TCCAATAACTCCCGAACGTTC 58.037 47.619 18.47 18.47 0.00 3.95
457 1691 3.622166 ATCCAATAACTCCCGAACGTT 57.378 42.857 0.00 0.00 0.00 3.99
458 1692 3.528532 GAATCCAATAACTCCCGAACGT 58.471 45.455 0.00 0.00 0.00 3.99
459 1693 2.870411 GGAATCCAATAACTCCCGAACG 59.130 50.000 0.00 0.00 0.00 3.95
460 1694 3.211865 GGGAATCCAATAACTCCCGAAC 58.788 50.000 0.09 0.00 38.34 3.95
461 1695 3.570912 GGGAATCCAATAACTCCCGAA 57.429 47.619 0.09 0.00 38.34 4.30
474 1708 3.947834 CCCTGCGATTATTATGGGAATCC 59.052 47.826 0.00 0.00 36.90 3.01
475 1709 3.947834 CCCCTGCGATTATTATGGGAATC 59.052 47.826 0.00 0.00 36.90 2.52
476 1710 3.333680 ACCCCTGCGATTATTATGGGAAT 59.666 43.478 0.00 0.00 36.90 3.01
477 1711 2.714250 ACCCCTGCGATTATTATGGGAA 59.286 45.455 0.00 0.00 36.90 3.97
478 1712 2.039746 CACCCCTGCGATTATTATGGGA 59.960 50.000 0.00 0.00 36.90 4.37
479 1713 2.436417 CACCCCTGCGATTATTATGGG 58.564 52.381 0.00 0.00 37.58 4.00
480 1714 1.812571 GCACCCCTGCGATTATTATGG 59.187 52.381 0.00 0.00 32.44 2.74
557 1791 4.651008 TCCACCGCGGTTGTCGAC 62.651 66.667 32.11 9.11 42.43 4.20
560 1794 4.681978 AGCTCCACCGCGGTTGTC 62.682 66.667 32.11 20.45 35.57 3.18
629 1872 3.422303 GCAGGAATGACGCACGCA 61.422 61.111 0.00 0.00 0.00 5.24
687 1936 2.202756 GACCATGCTCGACCGACC 60.203 66.667 0.00 0.00 0.00 4.79
695 1944 1.133025 CGGGTTTCAATGACCATGCTC 59.867 52.381 0.00 0.00 38.98 4.26
700 1949 2.226330 CAACTCGGGTTTCAATGACCA 58.774 47.619 0.00 0.00 38.98 4.02
721 1970 1.369625 AAATAGAGCCCGCGAACTTG 58.630 50.000 8.23 0.00 0.00 3.16
730 1979 3.084786 ACAGAGTTGCAAAATAGAGCCC 58.915 45.455 0.00 0.00 0.00 5.19
736 1985 7.517614 TTTATGTCCACAGAGTTGCAAAATA 57.482 32.000 0.00 0.00 0.00 1.40
740 1989 5.069318 TCATTTATGTCCACAGAGTTGCAA 58.931 37.500 0.00 0.00 0.00 4.08
757 2006 2.025544 GTGCAACGCGTGTTCATTTA 57.974 45.000 14.98 0.00 35.72 1.40
771 2020 1.737838 GGAGATTCATGGACGTGCAA 58.262 50.000 15.51 0.00 0.00 4.08
806 2055 2.159170 CGGAAGGGACTGAAGAAGCTAG 60.159 54.545 0.00 0.00 40.86 3.42
844 2137 3.407967 GCCCCTGGTCCGATGGAA 61.408 66.667 0.00 0.00 31.38 3.53
845 2138 3.943137 AAGCCCCTGGTCCGATGGA 62.943 63.158 0.00 0.00 0.00 3.41
910 2203 1.672356 GGACATGGCAGTGCGAACT 60.672 57.895 9.45 0.00 0.00 3.01
927 2220 4.308458 TGACTTGACCGCCGGTGG 62.308 66.667 32.55 32.55 35.25 4.61
942 2235 2.212794 GAGACGGGAGGGGAGACTGA 62.213 65.000 0.00 0.00 0.00 3.41
951 2244 1.739371 CGCTTTTAAGGAGACGGGAGG 60.739 57.143 0.00 0.00 0.00 4.30
961 2254 1.641577 CTCCTCCGTCGCTTTTAAGG 58.358 55.000 0.00 0.00 0.00 2.69
973 2266 1.026718 GTGAATGGCAACCTCCTCCG 61.027 60.000 0.00 0.00 0.00 4.63
993 2286 2.986019 TCCAGACTCCTCCATTTTTGGA 59.014 45.455 0.00 0.00 36.40 3.53
994 2287 3.439857 TCCAGACTCCTCCATTTTTGG 57.560 47.619 0.00 0.00 0.00 3.28
1009 2302 0.977627 ATGTGGCGGTGAGATCCAGA 60.978 55.000 0.00 0.00 0.00 3.86
1021 2314 1.138036 TTACGAGGACGATGTGGCG 59.862 57.895 0.00 0.00 42.66 5.69
1044 2337 4.681978 AGCACGACAACGAGGGCC 62.682 66.667 0.00 0.00 42.66 5.80
1370 2663 2.292061 GGGGTGTTGGAGTAGTAGAGGA 60.292 54.545 0.00 0.00 0.00 3.71
1568 2888 3.322466 CCCTGGGGAACTCGCTGT 61.322 66.667 4.27 0.00 37.50 4.40
1641 2962 1.227350 CTTGATGATGCCGGCGAGA 60.227 57.895 23.90 7.88 0.00 4.04
1805 3150 1.827399 GAGGGTTGCTGGAGTCGGAA 61.827 60.000 0.00 0.00 0.00 4.30
1846 3191 0.255890 GTAGCAAGCCTTCCATGGGA 59.744 55.000 13.02 0.69 0.00 4.37
1857 3202 3.077359 ACAGGATGAACAAGTAGCAAGC 58.923 45.455 0.00 0.00 39.69 4.01
1873 3218 2.076100 CGCTGCTTAATGTCAACAGGA 58.924 47.619 0.00 0.00 0.00 3.86
1915 3269 6.658188 AGTTAGTGAGGGCTAGCTATTTAG 57.342 41.667 15.72 0.00 32.08 1.85
1927 3281 9.319143 CATGTTAAGAGAAATAGTTAGTGAGGG 57.681 37.037 0.00 0.00 0.00 4.30
1930 3284 9.719355 TTGCATGTTAAGAGAAATAGTTAGTGA 57.281 29.630 0.00 0.00 0.00 3.41
1932 3286 8.669243 GCTTGCATGTTAAGAGAAATAGTTAGT 58.331 33.333 13.75 0.00 0.00 2.24
1939 3293 6.377996 TGGTATGCTTGCATGTTAAGAGAAAT 59.622 34.615 17.26 5.90 0.00 2.17
1947 3301 2.675844 GACGTGGTATGCTTGCATGTTA 59.324 45.455 17.26 1.64 0.00 2.41
1978 3332 1.652124 GTGCGCTTTTTCTCATGCATG 59.348 47.619 21.07 21.07 34.54 4.06
1992 3346 0.686441 TATGGTAGTGAGGGTGCGCT 60.686 55.000 9.73 0.00 0.00 5.92
1993 3347 0.393077 ATATGGTAGTGAGGGTGCGC 59.607 55.000 0.00 0.00 0.00 6.09
1994 3348 1.412710 ACATATGGTAGTGAGGGTGCG 59.587 52.381 7.80 0.00 0.00 5.34
1995 3349 2.700897 AGACATATGGTAGTGAGGGTGC 59.299 50.000 7.80 0.00 0.00 5.01
1998 3352 6.323996 TGTTAAGAGACATATGGTAGTGAGGG 59.676 42.308 7.80 0.00 0.00 4.30
2029 3383 5.242171 TGCATGTCATGATGAAGTGACTTTT 59.758 36.000 17.24 0.00 43.87 2.27
2030 3384 4.763279 TGCATGTCATGATGAAGTGACTTT 59.237 37.500 17.24 0.00 43.87 2.66
2031 3385 4.329392 TGCATGTCATGATGAAGTGACTT 58.671 39.130 17.24 0.00 43.87 3.01
2032 3386 3.946606 TGCATGTCATGATGAAGTGACT 58.053 40.909 17.24 0.00 43.87 3.41
2033 3387 4.895224 ATGCATGTCATGATGAAGTGAC 57.105 40.909 17.24 0.00 43.81 3.67
2034 3388 7.393841 TTTAATGCATGTCATGATGAAGTGA 57.606 32.000 17.24 0.00 35.13 3.41
2061 3415 6.586868 TGTGTTTGCATGTTGAGATTTTTC 57.413 33.333 0.00 0.00 0.00 2.29
2063 3417 6.981762 TTTGTGTTTGCATGTTGAGATTTT 57.018 29.167 0.00 0.00 0.00 1.82
2064 3418 6.762187 TCATTTGTGTTTGCATGTTGAGATTT 59.238 30.769 0.00 0.00 0.00 2.17
2065 3419 6.282167 TCATTTGTGTTTGCATGTTGAGATT 58.718 32.000 0.00 0.00 0.00 2.40
2085 3440 9.412460 TGGCATAATAGAATGAAAACTCTCATT 57.588 29.630 0.00 0.00 46.38 2.57
2208 3563 8.998989 CAATGTGATTCGTTGTATGAAACATAC 58.001 33.333 13.00 13.00 38.10 2.39
2216 3571 9.720667 ACATATTTCAATGTGATTCGTTGTATG 57.279 29.630 3.52 0.00 42.02 2.39
2253 3609 7.064281 ATGATACCTCACACGTTGTTACGGA 62.064 44.000 2.61 0.00 42.37 4.69
2256 3612 5.408356 AGATGATACCTCACACGTTGTTAC 58.592 41.667 0.00 0.00 33.22 2.50
2257 3613 5.654603 AGATGATACCTCACACGTTGTTA 57.345 39.130 0.00 0.00 33.22 2.41
2262 3618 7.584122 AAATACTAGATGATACCTCACACGT 57.416 36.000 0.00 0.00 33.22 4.49
2263 3619 8.135529 TGAAAATACTAGATGATACCTCACACG 58.864 37.037 0.00 0.00 33.22 4.49
2275 3631 8.141909 TCTACCGTCCATTGAAAATACTAGATG 58.858 37.037 0.00 0.00 0.00 2.90
2276 3632 8.246430 TCTACCGTCCATTGAAAATACTAGAT 57.754 34.615 0.00 0.00 0.00 1.98
2277 3633 7.649533 TCTACCGTCCATTGAAAATACTAGA 57.350 36.000 0.00 0.00 0.00 2.43
2279 3635 8.070034 TCTTCTACCGTCCATTGAAAATACTA 57.930 34.615 0.00 0.00 0.00 1.82
2281 3637 7.605410 TTCTTCTACCGTCCATTGAAAATAC 57.395 36.000 0.00 0.00 0.00 1.89
2282 3638 7.881232 AGTTTCTTCTACCGTCCATTGAAAATA 59.119 33.333 0.00 0.00 0.00 1.40
2283 3639 6.715264 AGTTTCTTCTACCGTCCATTGAAAAT 59.285 34.615 0.00 0.00 0.00 1.82
2284 3640 6.059484 AGTTTCTTCTACCGTCCATTGAAAA 58.941 36.000 0.00 0.00 0.00 2.29
2285 3641 5.617252 AGTTTCTTCTACCGTCCATTGAAA 58.383 37.500 0.00 0.00 0.00 2.69
2286 3642 5.223449 AGTTTCTTCTACCGTCCATTGAA 57.777 39.130 0.00 0.00 0.00 2.69
2287 3643 4.884668 AGTTTCTTCTACCGTCCATTGA 57.115 40.909 0.00 0.00 0.00 2.57
2288 3644 5.721232 ACTAGTTTCTTCTACCGTCCATTG 58.279 41.667 0.00 0.00 0.00 2.82
2289 3645 5.997384 ACTAGTTTCTTCTACCGTCCATT 57.003 39.130 0.00 0.00 0.00 3.16
2290 3646 5.067544 GCTACTAGTTTCTTCTACCGTCCAT 59.932 44.000 0.00 0.00 0.00 3.41
2291 3647 4.397417 GCTACTAGTTTCTTCTACCGTCCA 59.603 45.833 0.00 0.00 0.00 4.02
2292 3648 4.397417 TGCTACTAGTTTCTTCTACCGTCC 59.603 45.833 0.00 0.00 0.00 4.79
2293 3649 5.123661 AGTGCTACTAGTTTCTTCTACCGTC 59.876 44.000 0.00 0.00 0.00 4.79
2294 3650 5.008980 AGTGCTACTAGTTTCTTCTACCGT 58.991 41.667 0.00 0.00 0.00 4.83
2295 3651 5.564048 AGTGCTACTAGTTTCTTCTACCG 57.436 43.478 0.00 0.00 0.00 4.02
2296 3652 7.862512 TCTAGTGCTACTAGTTTCTTCTACC 57.137 40.000 17.38 0.00 46.31 3.18
2297 3653 9.111613 TCATCTAGTGCTACTAGTTTCTTCTAC 57.888 37.037 17.38 0.00 46.31 2.59
2298 3654 9.854668 ATCATCTAGTGCTACTAGTTTCTTCTA 57.145 33.333 17.38 0.00 46.31 2.10
2299 3655 8.629158 CATCATCTAGTGCTACTAGTTTCTTCT 58.371 37.037 17.38 0.00 46.31 2.85
2300 3656 8.410141 ACATCATCTAGTGCTACTAGTTTCTTC 58.590 37.037 17.38 0.00 46.31 2.87
2301 3657 8.299990 ACATCATCTAGTGCTACTAGTTTCTT 57.700 34.615 17.38 0.00 46.31 2.52
2302 3658 7.889873 ACATCATCTAGTGCTACTAGTTTCT 57.110 36.000 17.38 0.00 46.31 2.52
2319 3675 8.734386 AGACTAAAAACTCCATTCAACATCATC 58.266 33.333 0.00 0.00 0.00 2.92
2386 3745 2.545946 GCTGGTAGCTAATAGTTGCTGC 59.454 50.000 9.37 7.72 40.08 5.25
2429 3793 5.360591 CCAGAGTAATTAACGGCTCAAGAT 58.639 41.667 4.26 0.00 0.00 2.40
2430 3794 4.755411 CCAGAGTAATTAACGGCTCAAGA 58.245 43.478 4.26 0.00 0.00 3.02
2431 3795 3.309954 GCCAGAGTAATTAACGGCTCAAG 59.690 47.826 7.94 0.00 36.58 3.02
2432 3796 3.267483 GCCAGAGTAATTAACGGCTCAA 58.733 45.455 7.94 0.00 36.58 3.02
2509 3873 4.201861 GCTAGAATTGCAACAACTAGAGGC 60.202 45.833 26.29 15.74 34.36 4.70
2515 3879 6.093219 CAGTGATAGCTAGAATTGCAACAACT 59.907 38.462 0.00 4.15 0.00 3.16
2567 3931 0.390472 CTTGCTCGTCTTGTCCTCCC 60.390 60.000 0.00 0.00 0.00 4.30
2607 3971 8.175716 AGAAAGAAAAAGAAGTGTAAGACAACG 58.824 33.333 0.00 0.00 0.00 4.10
2787 4153 5.031495 AGAGAGCCCATAGAGATGCATTAT 58.969 41.667 0.00 0.00 0.00 1.28
2851 4217 5.813157 TCGGCGATAAGTGAATCAATGTTTA 59.187 36.000 4.99 0.00 0.00 2.01
2854 4220 3.792401 TCGGCGATAAGTGAATCAATGT 58.208 40.909 4.99 0.00 0.00 2.71
2880 4246 0.092351 GTCGCACGACGTAATGTTGG 59.908 55.000 7.51 0.00 44.19 3.77
2897 4263 0.373716 CAGCGGCAAAGTTATCCGTC 59.626 55.000 14.64 8.81 44.58 4.79
2915 4281 2.236146 TCCTTCTCCAAGCTTATTCGCA 59.764 45.455 0.00 0.00 0.00 5.10
2934 4300 2.396590 TAAACTGCACCGAATCCTCC 57.603 50.000 0.00 0.00 0.00 4.30
3337 4711 4.357325 TCTTGAGCTCTCCTATTCCTTGT 58.643 43.478 16.19 0.00 0.00 3.16
3364 4738 2.514803 AGCTTGGCGACCAAAATAAGT 58.485 42.857 11.56 0.00 43.44 2.24
3430 4804 0.179045 AGGCAAGCAGTTTCTCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
3433 4807 0.716108 CGTAGGCAAGCAGTTTCTCG 59.284 55.000 0.00 0.00 0.00 4.04
3448 4822 7.132213 CACTTTTATTGGGCATGTATTCGTAG 58.868 38.462 0.00 0.00 0.00 3.51
3472 4846 3.283751 ACCGAAAAGAATGGTGTCAACA 58.716 40.909 0.00 0.00 33.91 3.33
3519 4893 9.906660 TTCAGTTTTACAACCAAAATATGCTAG 57.093 29.630 0.00 0.00 32.70 3.42
3595 5030 1.573108 TTCCCCAGTCTAGCTCCTTG 58.427 55.000 0.00 0.00 0.00 3.61
3622 5057 4.511826 CGAGCAATCCCACTTATTACCTTC 59.488 45.833 0.00 0.00 0.00 3.46
3626 5061 4.058817 CCTCGAGCAATCCCACTTATTAC 58.941 47.826 6.99 0.00 0.00 1.89
3850 5285 4.475051 TTATAGTTGGCACACCGTATGT 57.525 40.909 0.00 0.00 44.81 2.29
3917 5352 2.180204 GCCACGCACCGCATATTCT 61.180 57.895 0.00 0.00 0.00 2.40
3939 5374 4.985044 ACACGTCCGATTTTACAGAAAG 57.015 40.909 0.00 0.00 0.00 2.62
4045 5480 6.822170 GGTAAGTAGGGAATTTACCAGACTTG 59.178 42.308 20.49 0.00 43.64 3.16
4057 5492 3.780850 CAAGACCAGGGTAAGTAGGGAAT 59.219 47.826 0.00 0.00 0.00 3.01
4103 5625 6.757010 ACCTGTATCGAATTAGCAACACTTAG 59.243 38.462 0.00 0.00 0.00 2.18
4105 5627 5.488341 ACCTGTATCGAATTAGCAACACTT 58.512 37.500 0.00 0.00 0.00 3.16
4110 5633 5.305902 TCCCATACCTGTATCGAATTAGCAA 59.694 40.000 0.00 0.00 0.00 3.91
4207 5730 2.030805 GCCGATGTGAAAAAGCTTCACT 60.031 45.455 16.02 4.28 46.53 3.41
4312 5835 1.330655 ATGGCTTCGATGGAGACCGT 61.331 55.000 0.00 0.00 0.00 4.83
4324 5847 3.129813 TGCACATGAGAAATGATGGCTTC 59.870 43.478 0.00 0.00 0.00 3.86
4345 5868 3.450457 ACTCAGAAGAAGTAGGGCTCATG 59.550 47.826 0.00 0.00 0.00 3.07
4363 5886 1.663379 CTGGCATACGGGTCGACTCA 61.663 60.000 17.19 0.00 0.00 3.41
4366 5889 2.106332 CCTGGCATACGGGTCGAC 59.894 66.667 7.13 7.13 41.03 4.20
4404 5927 1.200020 GTTCAAGCCCCGTGATTGAAG 59.800 52.381 13.71 0.00 42.02 3.02
4416 5939 1.538047 TGCTCATCTTGGTTCAAGCC 58.462 50.000 3.01 0.00 40.84 4.35
4444 5967 5.838521 AGACAACAACCCAATTATCCTTTGT 59.161 36.000 0.00 0.00 0.00 2.83
4447 5970 6.074648 TGAAGACAACAACCCAATTATCCTT 58.925 36.000 0.00 0.00 0.00 3.36
4533 6056 3.466836 CACTGAGCTGGTTTACTTCACA 58.533 45.455 0.00 0.00 0.00 3.58
4572 6095 9.665264 CTTCTGTTCCAAACTTATCAAAACTAC 57.335 33.333 0.00 0.00 0.00 2.73
4595 6118 4.324267 TCAACAAGTAGGGCTTTAGCTTC 58.676 43.478 0.00 0.00 41.70 3.86
4775 6300 8.780846 TTAACCATCTTTGATTAACGAGCTAA 57.219 30.769 0.00 0.00 0.00 3.09
4827 6352 5.679601 TGATGTGATCCCGTTCATCAAATA 58.320 37.500 0.00 0.00 42.01 1.40
4902 6429 9.973450 TGAAAGCAATAGCAATAAAACTAAACA 57.027 25.926 0.00 0.00 45.49 2.83
4951 6478 5.567154 CGAGAGTTGCATAATCTCATAGTCG 59.433 44.000 19.13 11.89 39.56 4.18
4973 6500 2.104967 AGGTGTTCATCCGGTATTCGA 58.895 47.619 0.00 0.00 42.43 3.71
4985 6512 3.483808 TGATAGCACACAAGGTGTTCA 57.516 42.857 0.00 0.00 45.08 3.18
5015 6542 6.704493 GCATCTTTATAATCACCCAGTTACGA 59.296 38.462 0.00 0.00 0.00 3.43
5046 6573 2.076863 CAAACACCTTCGGAGACATCC 58.923 52.381 0.00 0.00 42.81 3.51
5111 6638 0.189822 GGCCCAGAGATACCTCTCCT 59.810 60.000 0.00 0.00 46.38 3.69
5193 6720 4.890158 TCTGTAATGCATCATCCCGTAT 57.110 40.909 0.00 0.00 0.00 3.06
5194 6721 4.377021 GTTCTGTAATGCATCATCCCGTA 58.623 43.478 0.00 0.00 0.00 4.02
5195 6722 3.206150 GTTCTGTAATGCATCATCCCGT 58.794 45.455 0.00 0.00 0.00 5.28
5196 6723 2.221749 CGTTCTGTAATGCATCATCCCG 59.778 50.000 0.00 0.00 0.00 5.14
5197 6724 3.466836 TCGTTCTGTAATGCATCATCCC 58.533 45.455 0.00 0.00 0.00 3.85
5198 6725 4.122776 ACTCGTTCTGTAATGCATCATCC 58.877 43.478 0.00 0.00 0.00 3.51
5199 6726 6.828502 TTACTCGTTCTGTAATGCATCATC 57.171 37.500 0.00 0.00 0.00 2.92
5212 6739 3.612004 CGGCAAGTCTCTTTACTCGTTCT 60.612 47.826 0.00 0.00 0.00 3.01
5365 6892 3.435601 GGAACCTGGATGCTCATATTGGT 60.436 47.826 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.