Multiple sequence alignment - TraesCS3D01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G107600 chr3D 100.000 2231 0 0 1 2231 61223588 61225818 0.000000e+00 4120.0
1 TraesCS3D01G107600 chr3A 88.071 1643 105 40 235 1812 69310523 69312139 0.000000e+00 1864.0
2 TraesCS3D01G107600 chr3A 92.958 355 25 0 1870 2224 69312133 69312487 3.280000e-143 518.0
3 TraesCS3D01G107600 chr3B 89.140 1151 64 30 258 1369 96849704 96850832 0.000000e+00 1376.0
4 TraesCS3D01G107600 chr3B 90.784 510 34 9 1728 2224 96871985 96872494 0.000000e+00 669.0
5 TraesCS3D01G107600 chr3B 91.111 90 6 2 1640 1727 96864557 96864646 1.080000e-23 121.0
6 TraesCS3D01G107600 chr3B 80.645 124 12 8 1480 1603 96864439 96864550 3.950000e-13 86.1
7 TraesCS3D01G107600 chr7B 82.077 491 35 19 615 1105 611044849 611044412 9.730000e-99 370.0
8 TraesCS3D01G107600 chr7B 86.158 354 27 8 622 975 610752219 610751888 1.630000e-96 363.0
9 TraesCS3D01G107600 chr6B 87.611 226 7 6 321 525 716372826 716373051 2.210000e-60 243.0
10 TraesCS3D01G107600 chr6B 83.085 201 13 7 1172 1364 716373127 716373314 1.770000e-36 163.0
11 TraesCS3D01G107600 chr5A 100.000 30 0 0 1733 1762 491306018 491305989 3.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G107600 chr3D 61223588 61225818 2230 False 4120 4120 100.0000 1 2231 1 chr3D.!!$F1 2230
1 TraesCS3D01G107600 chr3A 69310523 69312487 1964 False 1191 1864 90.5145 235 2224 2 chr3A.!!$F1 1989
2 TraesCS3D01G107600 chr3B 96849704 96850832 1128 False 1376 1376 89.1400 258 1369 1 chr3B.!!$F1 1111
3 TraesCS3D01G107600 chr3B 96871985 96872494 509 False 669 669 90.7840 1728 2224 1 chr3B.!!$F2 496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.17925 CGGCACAGTGAAAATCGTCG 60.179 55.0 4.15 0.0 0.0 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1315 0.034574 ATGGCAAACGGCATCACCTA 60.035 50.0 0.0 0.0 45.95 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.517013 TCTCCATCTCCATGTAGTACTAGT 57.483 41.667 1.87 0.00 0.00 2.57
25 26 7.628501 TCTCCATCTCCATGTAGTACTAGTA 57.371 40.000 1.87 0.00 0.00 1.82
26 27 7.681679 TCTCCATCTCCATGTAGTACTAGTAG 58.318 42.308 1.87 0.00 0.00 2.57
27 28 7.292827 TCTCCATCTCCATGTAGTACTAGTAGT 59.707 40.741 14.57 14.57 0.00 2.73
28 29 8.502047 TCCATCTCCATGTAGTACTAGTAGTA 57.498 38.462 12.58 12.58 0.00 1.82
29 30 9.113797 TCCATCTCCATGTAGTACTAGTAGTAT 57.886 37.037 18.28 4.30 32.65 2.12
30 31 9.386010 CCATCTCCATGTAGTACTAGTAGTATC 57.614 40.741 18.28 12.96 32.65 2.24
31 32 9.945904 CATCTCCATGTAGTACTAGTAGTATCA 57.054 37.037 18.28 16.93 32.65 2.15
33 34 9.156940 TCTCCATGTAGTACTAGTAGTATCAGT 57.843 37.037 18.28 0.00 32.65 3.41
34 35 9.781633 CTCCATGTAGTACTAGTAGTATCAGTT 57.218 37.037 18.28 4.88 32.65 3.16
35 36 9.557061 TCCATGTAGTACTAGTAGTATCAGTTG 57.443 37.037 18.28 13.38 32.65 3.16
36 37 9.339850 CCATGTAGTACTAGTAGTATCAGTTGT 57.660 37.037 18.28 4.08 32.65 3.32
38 39 8.728337 TGTAGTACTAGTAGTATCAGTTGTGG 57.272 38.462 18.28 0.00 32.65 4.17
39 40 7.772292 TGTAGTACTAGTAGTATCAGTTGTGGG 59.228 40.741 18.28 0.00 32.65 4.61
40 41 6.966751 AGTACTAGTAGTATCAGTTGTGGGA 58.033 40.000 13.09 0.00 32.65 4.37
41 42 7.584532 AGTACTAGTAGTATCAGTTGTGGGAT 58.415 38.462 13.09 0.00 32.65 3.85
42 43 8.060075 AGTACTAGTAGTATCAGTTGTGGGATT 58.940 37.037 13.09 0.00 32.65 3.01
43 44 7.349412 ACTAGTAGTATCAGTTGTGGGATTC 57.651 40.000 0.00 0.00 0.00 2.52
44 45 7.126733 ACTAGTAGTATCAGTTGTGGGATTCT 58.873 38.462 0.00 0.00 0.00 2.40
45 46 8.280084 ACTAGTAGTATCAGTTGTGGGATTCTA 58.720 37.037 0.00 0.00 0.00 2.10
46 47 7.973048 AGTAGTATCAGTTGTGGGATTCTAA 57.027 36.000 0.00 0.00 29.15 2.10
47 48 7.783042 AGTAGTATCAGTTGTGGGATTCTAAC 58.217 38.462 0.00 0.00 29.15 2.34
48 49 6.875972 AGTATCAGTTGTGGGATTCTAACT 57.124 37.500 0.00 0.00 33.94 2.24
49 50 7.259088 AGTATCAGTTGTGGGATTCTAACTT 57.741 36.000 0.00 0.00 31.47 2.66
50 51 7.690256 AGTATCAGTTGTGGGATTCTAACTTT 58.310 34.615 0.00 0.00 31.47 2.66
51 52 6.824305 ATCAGTTGTGGGATTCTAACTTTG 57.176 37.500 0.00 0.00 31.47 2.77
52 53 5.935945 TCAGTTGTGGGATTCTAACTTTGA 58.064 37.500 0.00 0.00 31.47 2.69
53 54 6.542821 TCAGTTGTGGGATTCTAACTTTGAT 58.457 36.000 0.00 0.00 31.47 2.57
54 55 6.430925 TCAGTTGTGGGATTCTAACTTTGATG 59.569 38.462 0.00 0.00 31.47 3.07
55 56 6.430925 CAGTTGTGGGATTCTAACTTTGATGA 59.569 38.462 0.00 0.00 31.47 2.92
56 57 7.004086 AGTTGTGGGATTCTAACTTTGATGAA 58.996 34.615 0.00 0.00 29.65 2.57
57 58 7.671398 AGTTGTGGGATTCTAACTTTGATGAAT 59.329 33.333 0.00 0.00 29.65 2.57
58 59 8.306761 GTTGTGGGATTCTAACTTTGATGAATT 58.693 33.333 0.00 0.00 30.41 2.17
59 60 8.421249 TGTGGGATTCTAACTTTGATGAATTT 57.579 30.769 0.00 0.00 30.41 1.82
60 61 8.522830 TGTGGGATTCTAACTTTGATGAATTTC 58.477 33.333 0.00 0.00 30.41 2.17
61 62 8.522830 GTGGGATTCTAACTTTGATGAATTTCA 58.477 33.333 0.75 0.75 30.41 2.69
62 63 9.258629 TGGGATTCTAACTTTGATGAATTTCAT 57.741 29.630 11.64 11.64 40.34 2.57
63 64 9.525409 GGGATTCTAACTTTGATGAATTTCATG 57.475 33.333 16.41 4.96 37.20 3.07
67 68 9.611284 TTCTAACTTTGATGAATTTCATGAACG 57.389 29.630 16.41 13.68 37.20 3.95
68 69 8.236586 TCTAACTTTGATGAATTTCATGAACGG 58.763 33.333 16.41 11.43 37.20 4.44
69 70 6.331369 ACTTTGATGAATTTCATGAACGGT 57.669 33.333 16.41 11.97 37.20 4.83
70 71 6.151691 ACTTTGATGAATTTCATGAACGGTG 58.848 36.000 16.41 7.34 37.20 4.94
71 72 5.703978 TTGATGAATTTCATGAACGGTGT 57.296 34.783 16.41 0.00 37.20 4.16
72 73 5.295431 TGATGAATTTCATGAACGGTGTC 57.705 39.130 16.41 5.16 37.20 3.67
73 74 5.003160 TGATGAATTTCATGAACGGTGTCT 58.997 37.500 16.41 0.00 37.20 3.41
74 75 5.473162 TGATGAATTTCATGAACGGTGTCTT 59.527 36.000 16.41 0.18 37.20 3.01
75 76 5.766150 TGAATTTCATGAACGGTGTCTTT 57.234 34.783 7.89 0.00 0.00 2.52
76 77 6.142818 TGAATTTCATGAACGGTGTCTTTT 57.857 33.333 7.89 0.00 0.00 2.27
77 78 6.205784 TGAATTTCATGAACGGTGTCTTTTC 58.794 36.000 7.89 2.00 0.00 2.29
78 79 6.039270 TGAATTTCATGAACGGTGTCTTTTCT 59.961 34.615 7.89 0.00 0.00 2.52
79 80 4.811555 TTCATGAACGGTGTCTTTTCTG 57.188 40.909 3.38 0.00 0.00 3.02
80 81 3.138304 TCATGAACGGTGTCTTTTCTGG 58.862 45.455 0.00 0.00 0.00 3.86
81 82 2.702592 TGAACGGTGTCTTTTCTGGT 57.297 45.000 0.00 0.00 0.00 4.00
82 83 2.285083 TGAACGGTGTCTTTTCTGGTG 58.715 47.619 0.00 0.00 0.00 4.17
83 84 2.093394 TGAACGGTGTCTTTTCTGGTGA 60.093 45.455 0.00 0.00 0.00 4.02
84 85 1.949465 ACGGTGTCTTTTCTGGTGAC 58.051 50.000 0.00 0.00 0.00 3.67
85 86 1.485066 ACGGTGTCTTTTCTGGTGACT 59.515 47.619 0.00 0.00 0.00 3.41
86 87 2.093128 ACGGTGTCTTTTCTGGTGACTT 60.093 45.455 0.00 0.00 0.00 3.01
87 88 3.133362 ACGGTGTCTTTTCTGGTGACTTA 59.867 43.478 0.00 0.00 0.00 2.24
88 89 3.741344 CGGTGTCTTTTCTGGTGACTTAG 59.259 47.826 0.00 0.00 0.00 2.18
89 90 4.500887 CGGTGTCTTTTCTGGTGACTTAGA 60.501 45.833 0.00 0.00 0.00 2.10
90 91 5.552178 GGTGTCTTTTCTGGTGACTTAGAT 58.448 41.667 0.00 0.00 0.00 1.98
91 92 5.409826 GGTGTCTTTTCTGGTGACTTAGATG 59.590 44.000 0.00 0.00 0.00 2.90
92 93 6.223852 GTGTCTTTTCTGGTGACTTAGATGA 58.776 40.000 0.00 0.00 0.00 2.92
93 94 6.876257 GTGTCTTTTCTGGTGACTTAGATGAT 59.124 38.462 0.00 0.00 0.00 2.45
94 95 7.389053 GTGTCTTTTCTGGTGACTTAGATGATT 59.611 37.037 0.00 0.00 0.00 2.57
95 96 7.388776 TGTCTTTTCTGGTGACTTAGATGATTG 59.611 37.037 0.00 0.00 0.00 2.67
96 97 7.604164 GTCTTTTCTGGTGACTTAGATGATTGA 59.396 37.037 0.00 0.00 0.00 2.57
97 98 8.324306 TCTTTTCTGGTGACTTAGATGATTGAT 58.676 33.333 0.00 0.00 0.00 2.57
98 99 7.854557 TTTCTGGTGACTTAGATGATTGATG 57.145 36.000 0.00 0.00 0.00 3.07
99 100 5.922053 TCTGGTGACTTAGATGATTGATGG 58.078 41.667 0.00 0.00 0.00 3.51
100 101 4.454678 TGGTGACTTAGATGATTGATGGC 58.545 43.478 0.00 0.00 0.00 4.40
101 102 4.080413 TGGTGACTTAGATGATTGATGGCA 60.080 41.667 0.00 0.00 0.00 4.92
102 103 4.883585 GGTGACTTAGATGATTGATGGCAA 59.116 41.667 0.00 0.00 38.60 4.52
103 104 5.357878 GGTGACTTAGATGATTGATGGCAAA 59.642 40.000 0.00 0.00 37.59 3.68
104 105 6.459298 GGTGACTTAGATGATTGATGGCAAAG 60.459 42.308 0.00 0.00 37.59 2.77
105 106 6.317140 GTGACTTAGATGATTGATGGCAAAGA 59.683 38.462 0.00 0.00 37.59 2.52
106 107 6.541278 TGACTTAGATGATTGATGGCAAAGAG 59.459 38.462 0.00 0.00 37.59 2.85
107 108 6.656902 ACTTAGATGATTGATGGCAAAGAGA 58.343 36.000 0.00 0.00 37.59 3.10
108 109 6.766944 ACTTAGATGATTGATGGCAAAGAGAG 59.233 38.462 0.00 0.00 37.59 3.20
109 110 5.369409 AGATGATTGATGGCAAAGAGAGA 57.631 39.130 0.00 0.00 37.59 3.10
110 111 5.752650 AGATGATTGATGGCAAAGAGAGAA 58.247 37.500 0.00 0.00 37.59 2.87
111 112 6.185511 AGATGATTGATGGCAAAGAGAGAAA 58.814 36.000 0.00 0.00 37.59 2.52
112 113 6.834451 AGATGATTGATGGCAAAGAGAGAAAT 59.166 34.615 0.00 0.00 37.59 2.17
113 114 6.203808 TGATTGATGGCAAAGAGAGAAATG 57.796 37.500 0.00 0.00 37.59 2.32
114 115 5.713389 TGATTGATGGCAAAGAGAGAAATGT 59.287 36.000 0.00 0.00 37.59 2.71
115 116 6.209986 TGATTGATGGCAAAGAGAGAAATGTT 59.790 34.615 0.00 0.00 37.59 2.71
116 117 6.409524 TTGATGGCAAAGAGAGAAATGTTT 57.590 33.333 0.00 0.00 0.00 2.83
117 118 6.017400 TGATGGCAAAGAGAGAAATGTTTC 57.983 37.500 0.00 0.00 37.45 2.78
118 119 7.039223 ATTGATGGCAAAGAGAGAAATGTTTCT 60.039 33.333 7.68 7.68 42.73 2.52
119 120 5.443185 TGGCAAAGAGAGAAATGTTTCTG 57.557 39.130 12.39 0.25 46.84 3.02
120 121 5.132502 TGGCAAAGAGAGAAATGTTTCTGA 58.867 37.500 12.39 0.00 46.84 3.27
121 122 5.771666 TGGCAAAGAGAGAAATGTTTCTGAT 59.228 36.000 12.39 1.76 46.84 2.90
122 123 6.266103 TGGCAAAGAGAGAAATGTTTCTGATT 59.734 34.615 12.39 2.60 46.84 2.57
123 124 7.448161 TGGCAAAGAGAGAAATGTTTCTGATTA 59.552 33.333 12.39 0.00 46.84 1.75
124 125 8.465201 GGCAAAGAGAGAAATGTTTCTGATTAT 58.535 33.333 12.39 0.00 46.84 1.28
125 126 9.852091 GCAAAGAGAGAAATGTTTCTGATTATT 57.148 29.630 12.39 0.54 46.84 1.40
129 130 9.393512 AGAGAGAAATGTTTCTGATTATTCTGG 57.606 33.333 12.39 0.00 46.84 3.86
130 131 9.171877 GAGAGAAATGTTTCTGATTATTCTGGT 57.828 33.333 12.39 0.00 46.84 4.00
133 134 9.739276 AGAAATGTTTCTGATTATTCTGGTACA 57.261 29.630 7.18 0.00 45.27 2.90
136 137 9.685276 AATGTTTCTGATTATTCTGGTACATGA 57.315 29.630 0.00 0.00 38.20 3.07
137 138 8.492673 TGTTTCTGATTATTCTGGTACATGAC 57.507 34.615 0.00 0.00 38.20 3.06
138 139 8.321353 TGTTTCTGATTATTCTGGTACATGACT 58.679 33.333 0.00 0.00 38.20 3.41
139 140 9.817809 GTTTCTGATTATTCTGGTACATGACTA 57.182 33.333 0.00 0.00 38.20 2.59
141 142 8.996651 TCTGATTATTCTGGTACATGACTAGA 57.003 34.615 0.00 3.51 43.42 2.43
142 143 9.593565 TCTGATTATTCTGGTACATGACTAGAT 57.406 33.333 0.00 0.67 44.39 1.98
143 144 9.636879 CTGATTATTCTGGTACATGACTAGATG 57.363 37.037 0.00 0.00 44.39 2.90
144 145 9.367160 TGATTATTCTGGTACATGACTAGATGA 57.633 33.333 0.00 0.00 44.39 2.92
147 148 9.593565 TTATTCTGGTACATGACTAGATGATCT 57.406 33.333 0.00 0.00 44.39 2.75
148 149 7.904558 TTCTGGTACATGACTAGATGATCTT 57.095 36.000 0.00 0.00 44.39 2.40
149 150 7.517614 TCTGGTACATGACTAGATGATCTTC 57.482 40.000 0.00 0.31 40.50 2.87
150 151 7.293828 TCTGGTACATGACTAGATGATCTTCT 58.706 38.462 14.87 14.87 40.50 2.85
151 152 7.230309 TCTGGTACATGACTAGATGATCTTCTG 59.770 40.741 18.81 11.98 40.50 3.02
152 153 7.062957 TGGTACATGACTAGATGATCTTCTGA 58.937 38.462 18.81 5.00 0.00 3.27
153 154 7.561356 TGGTACATGACTAGATGATCTTCTGAA 59.439 37.037 18.81 1.85 0.00 3.02
154 155 8.081633 GGTACATGACTAGATGATCTTCTGAAG 58.918 40.741 18.81 11.18 0.00 3.02
155 156 6.514947 ACATGACTAGATGATCTTCTGAAGC 58.485 40.000 18.81 8.01 0.00 3.86
156 157 6.097981 ACATGACTAGATGATCTTCTGAAGCA 59.902 38.462 18.81 12.28 0.00 3.91
157 158 6.728089 TGACTAGATGATCTTCTGAAGCAT 57.272 37.500 18.81 10.76 0.00 3.79
158 159 6.747125 TGACTAGATGATCTTCTGAAGCATC 58.253 40.000 20.95 20.95 37.85 3.91
159 160 6.550481 TGACTAGATGATCTTCTGAAGCATCT 59.450 38.462 27.95 27.95 43.84 2.90
160 161 7.723172 TGACTAGATGATCTTCTGAAGCATCTA 59.277 37.037 27.49 27.49 42.69 1.98
161 162 7.885297 ACTAGATGATCTTCTGAAGCATCTAC 58.115 38.462 26.61 19.11 42.69 2.59
162 163 6.100404 AGATGATCTTCTGAAGCATCTACC 57.900 41.667 25.83 15.83 41.87 3.18
163 164 4.313277 TGATCTTCTGAAGCATCTACCG 57.687 45.455 12.54 0.00 0.00 4.02
164 165 3.068732 TGATCTTCTGAAGCATCTACCGG 59.931 47.826 12.54 0.00 0.00 5.28
165 166 2.735151 TCTTCTGAAGCATCTACCGGA 58.265 47.619 9.46 0.00 0.00 5.14
166 167 2.690497 TCTTCTGAAGCATCTACCGGAG 59.310 50.000 9.46 0.60 0.00 4.63
167 168 2.437085 TCTGAAGCATCTACCGGAGA 57.563 50.000 9.46 7.33 39.01 3.71
168 169 2.302260 TCTGAAGCATCTACCGGAGAG 58.698 52.381 9.46 4.89 37.70 3.20
169 170 2.092375 TCTGAAGCATCTACCGGAGAGA 60.092 50.000 9.46 11.26 37.70 3.10
170 171 2.890311 CTGAAGCATCTACCGGAGAGAT 59.110 50.000 9.46 13.31 37.70 2.75
173 174 3.782884 CATCTACCGGAGAGATGCG 57.217 57.895 26.90 13.08 42.78 4.73
174 175 0.387878 CATCTACCGGAGAGATGCGC 60.388 60.000 26.90 0.00 42.78 6.09
175 176 1.528292 ATCTACCGGAGAGATGCGCC 61.528 60.000 18.81 0.00 37.70 6.53
180 181 4.201951 GGAGAGATGCGCCGAAAA 57.798 55.556 4.18 0.00 0.00 2.29
181 182 1.716172 GGAGAGATGCGCCGAAAAC 59.284 57.895 4.18 0.00 0.00 2.43
182 183 1.345176 GAGAGATGCGCCGAAAACG 59.655 57.895 4.18 0.00 0.00 3.60
183 184 1.076533 GAGAGATGCGCCGAAAACGA 61.077 55.000 4.18 0.00 0.00 3.85
184 185 1.078759 AGAGATGCGCCGAAAACGAG 61.079 55.000 4.18 0.00 0.00 4.18
185 186 1.352156 GAGATGCGCCGAAAACGAGT 61.352 55.000 4.18 0.00 0.00 4.18
186 187 1.225745 GATGCGCCGAAAACGAGTG 60.226 57.895 4.18 0.00 0.00 3.51
187 188 1.897398 GATGCGCCGAAAACGAGTGT 61.897 55.000 4.18 0.00 0.00 3.55
188 189 0.668096 ATGCGCCGAAAACGAGTGTA 60.668 50.000 4.18 0.00 0.00 2.90
189 190 0.668096 TGCGCCGAAAACGAGTGTAT 60.668 50.000 4.18 0.00 0.00 2.29
190 191 0.247145 GCGCCGAAAACGAGTGTATG 60.247 55.000 0.00 0.00 0.00 2.39
191 192 1.065358 CGCCGAAAACGAGTGTATGT 58.935 50.000 0.00 0.00 0.00 2.29
192 193 2.252747 CGCCGAAAACGAGTGTATGTA 58.747 47.619 0.00 0.00 0.00 2.29
193 194 2.278094 CGCCGAAAACGAGTGTATGTAG 59.722 50.000 0.00 0.00 0.00 2.74
194 195 3.248266 GCCGAAAACGAGTGTATGTAGT 58.752 45.455 0.00 0.00 0.00 2.73
195 196 3.060363 GCCGAAAACGAGTGTATGTAGTG 59.940 47.826 0.00 0.00 0.00 2.74
196 197 3.060363 CCGAAAACGAGTGTATGTAGTGC 59.940 47.826 0.00 0.00 0.00 4.40
197 198 3.060363 CGAAAACGAGTGTATGTAGTGCC 59.940 47.826 0.00 0.00 0.00 5.01
198 199 2.273370 AACGAGTGTATGTAGTGCCG 57.727 50.000 0.00 0.00 0.00 5.69
199 200 1.171308 ACGAGTGTATGTAGTGCCGT 58.829 50.000 0.00 0.00 0.00 5.68
200 201 2.358957 ACGAGTGTATGTAGTGCCGTA 58.641 47.619 0.00 0.00 0.00 4.02
201 202 2.947652 ACGAGTGTATGTAGTGCCGTAT 59.052 45.455 0.00 0.00 0.00 3.06
202 203 3.379372 ACGAGTGTATGTAGTGCCGTATT 59.621 43.478 0.00 0.00 0.00 1.89
203 204 4.142315 ACGAGTGTATGTAGTGCCGTATTT 60.142 41.667 0.00 0.00 0.00 1.40
204 205 4.802039 CGAGTGTATGTAGTGCCGTATTTT 59.198 41.667 0.00 0.00 0.00 1.82
205 206 5.290158 CGAGTGTATGTAGTGCCGTATTTTT 59.710 40.000 0.00 0.00 0.00 1.94
206 207 6.473131 CGAGTGTATGTAGTGCCGTATTTTTA 59.527 38.462 0.00 0.00 0.00 1.52
207 208 7.514125 CGAGTGTATGTAGTGCCGTATTTTTAC 60.514 40.741 0.00 0.00 0.00 2.01
208 209 6.536224 AGTGTATGTAGTGCCGTATTTTTACC 59.464 38.462 0.00 0.00 0.00 2.85
209 210 5.816777 TGTATGTAGTGCCGTATTTTTACCC 59.183 40.000 0.00 0.00 0.00 3.69
210 211 4.556592 TGTAGTGCCGTATTTTTACCCT 57.443 40.909 0.00 0.00 0.00 4.34
211 212 4.255301 TGTAGTGCCGTATTTTTACCCTG 58.745 43.478 0.00 0.00 0.00 4.45
212 213 3.428413 AGTGCCGTATTTTTACCCTGT 57.572 42.857 0.00 0.00 0.00 4.00
213 214 3.758425 AGTGCCGTATTTTTACCCTGTT 58.242 40.909 0.00 0.00 0.00 3.16
214 215 4.146564 AGTGCCGTATTTTTACCCTGTTT 58.853 39.130 0.00 0.00 0.00 2.83
215 216 5.315348 AGTGCCGTATTTTTACCCTGTTTA 58.685 37.500 0.00 0.00 0.00 2.01
216 217 5.181811 AGTGCCGTATTTTTACCCTGTTTAC 59.818 40.000 0.00 0.00 0.00 2.01
217 218 4.458642 TGCCGTATTTTTACCCTGTTTACC 59.541 41.667 0.00 0.00 0.00 2.85
218 219 4.437255 GCCGTATTTTTACCCTGTTTACCG 60.437 45.833 0.00 0.00 0.00 4.02
219 220 4.094739 CCGTATTTTTACCCTGTTTACCGG 59.905 45.833 0.00 0.00 0.00 5.28
220 221 4.437255 CGTATTTTTACCCTGTTTACCGGC 60.437 45.833 0.00 0.00 0.00 6.13
221 222 2.653234 TTTTACCCTGTTTACCGGCA 57.347 45.000 0.00 0.00 0.00 5.69
222 223 2.883122 TTTACCCTGTTTACCGGCAT 57.117 45.000 0.00 0.00 0.00 4.40
223 224 2.406596 TTACCCTGTTTACCGGCATC 57.593 50.000 0.00 0.00 0.00 3.91
224 225 0.542805 TACCCTGTTTACCGGCATCC 59.457 55.000 0.00 0.00 0.00 3.51
238 239 0.527565 GCATCCGGCACAGTGAAAAT 59.472 50.000 4.15 0.00 43.97 1.82
243 244 0.179250 CGGCACAGTGAAAATCGTCG 60.179 55.000 4.15 0.00 0.00 5.12
244 245 0.865769 GGCACAGTGAAAATCGTCGT 59.134 50.000 4.15 0.00 0.00 4.34
261 262 1.831389 CGTGTTGGACTGAACCAGCG 61.831 60.000 0.00 0.00 42.63 5.18
277 278 1.143620 GCGAGAGGCAGAAGCAGAT 59.856 57.895 0.00 0.00 44.61 2.90
279 280 0.594540 CGAGAGGCAGAAGCAGATCG 60.595 60.000 0.00 0.00 44.61 3.69
324 328 2.871427 GCCGTTAATGCGAGGCGAG 61.871 63.158 0.00 0.00 40.17 5.03
468 480 0.734253 CACGCCCGAACTCTCTGAAG 60.734 60.000 0.00 0.00 0.00 3.02
495 507 3.829044 CCCATGCATGCACACCCG 61.829 66.667 25.37 9.13 0.00 5.28
548 564 0.806102 CGTGCCCATAACTCTCACGG 60.806 60.000 5.31 0.00 44.47 4.94
585 602 3.988379 GCATCGCCATTTCATTTAGGA 57.012 42.857 0.00 0.00 0.00 2.94
586 603 3.893720 GCATCGCCATTTCATTTAGGAG 58.106 45.455 0.00 0.00 0.00 3.69
701 720 2.553904 CCAACAGGATCTTTGTGCTCCT 60.554 50.000 4.54 0.00 40.05 3.69
707 726 3.846588 AGGATCTTTGTGCTCCTAGGAAA 59.153 43.478 13.77 0.68 37.64 3.13
934 953 2.348685 CGGTACATCTCTTCGTAGCTCG 60.349 54.545 0.00 0.00 41.41 5.03
956 975 1.676006 CGTCTGTTTTTCCAGCACCTT 59.324 47.619 0.00 0.00 32.32 3.50
957 976 2.541588 CGTCTGTTTTTCCAGCACCTTG 60.542 50.000 0.00 0.00 32.32 3.61
958 977 2.427095 GTCTGTTTTTCCAGCACCTTGT 59.573 45.455 0.00 0.00 32.32 3.16
959 978 2.426738 TCTGTTTTTCCAGCACCTTGTG 59.573 45.455 0.00 0.00 36.51 3.33
1031 1061 0.874390 TTGATTGTTCAGGTGAGCGC 59.126 50.000 0.00 0.00 32.27 5.92
1034 1064 1.016130 ATTGTTCAGGTGAGCGCGAG 61.016 55.000 12.10 0.00 0.00 5.03
1035 1065 2.082629 TTGTTCAGGTGAGCGCGAGA 62.083 55.000 12.10 0.00 0.00 4.04
1036 1066 1.803519 GTTCAGGTGAGCGCGAGAG 60.804 63.158 12.10 0.00 0.00 3.20
1074 1104 3.774528 CAGCGGCTGAGCAGGGTA 61.775 66.667 25.33 0.00 40.15 3.69
1235 1270 0.179134 GTCTTCGACCCATGACTCCG 60.179 60.000 0.00 0.00 0.00 4.63
1239 1274 1.153823 CGACCCATGACTCCGTGAC 60.154 63.158 0.00 0.00 0.00 3.67
1240 1275 1.218316 GACCCATGACTCCGTGACC 59.782 63.158 0.00 0.00 0.00 4.02
1241 1276 2.184322 CCCATGACTCCGTGACCG 59.816 66.667 0.00 0.00 0.00 4.79
1242 1277 2.646175 CCCATGACTCCGTGACCGT 61.646 63.158 0.00 0.00 0.00 4.83
1243 1278 1.153823 CCATGACTCCGTGACCGTC 60.154 63.158 0.00 0.00 0.00 4.79
1244 1279 1.584495 CATGACTCCGTGACCGTCA 59.416 57.895 0.00 0.00 41.36 4.35
1245 1280 0.456824 CATGACTCCGTGACCGTCAG 60.457 60.000 0.08 0.00 40.56 3.51
1246 1281 0.608308 ATGACTCCGTGACCGTCAGA 60.608 55.000 0.08 0.00 40.56 3.27
1247 1282 0.608308 TGACTCCGTGACCGTCAGAT 60.608 55.000 0.08 0.00 33.15 2.90
1248 1283 0.099082 GACTCCGTGACCGTCAGATC 59.901 60.000 0.08 0.00 0.00 2.75
1250 1285 0.099613 CTCCGTGACCGTCAGATCAG 59.900 60.000 0.08 0.00 0.00 2.90
1251 1286 0.322187 TCCGTGACCGTCAGATCAGA 60.322 55.000 0.08 0.00 0.00 3.27
1252 1287 0.741326 CCGTGACCGTCAGATCAGAT 59.259 55.000 0.08 0.00 0.00 2.90
1253 1288 1.268794 CCGTGACCGTCAGATCAGATC 60.269 57.143 0.08 1.64 0.00 2.75
1254 1289 1.401905 CGTGACCGTCAGATCAGATCA 59.598 52.381 13.14 0.00 0.00 2.92
1256 1291 2.425312 GTGACCGTCAGATCAGATCAGT 59.575 50.000 13.14 2.02 0.00 3.41
1258 1293 1.135915 ACCGTCAGATCAGATCAGTGC 59.864 52.381 13.14 2.42 0.00 4.40
1259 1294 1.135721 CCGTCAGATCAGATCAGTGCA 59.864 52.381 13.14 0.00 0.00 4.57
1261 1296 2.191802 GTCAGATCAGATCAGTGCACG 58.808 52.381 12.01 6.78 0.00 5.34
1262 1297 1.135721 TCAGATCAGATCAGTGCACGG 59.864 52.381 12.01 11.52 0.00 4.94
1263 1298 0.463204 AGATCAGATCAGTGCACGGG 59.537 55.000 17.13 11.00 0.00 5.28
1264 1299 0.461548 GATCAGATCAGTGCACGGGA 59.538 55.000 17.13 16.03 0.00 5.14
1265 1300 0.904649 ATCAGATCAGTGCACGGGAA 59.095 50.000 17.13 0.00 0.00 3.97
1266 1301 0.247460 TCAGATCAGTGCACGGGAAG 59.753 55.000 17.13 10.37 0.00 3.46
1267 1302 1.078848 AGATCAGTGCACGGGAAGC 60.079 57.895 17.13 11.98 0.00 3.86
1268 1303 1.375908 GATCAGTGCACGGGAAGCA 60.376 57.895 17.13 0.00 40.19 3.91
1269 1304 1.364626 GATCAGTGCACGGGAAGCAG 61.365 60.000 17.13 0.00 43.63 4.24
1270 1305 3.730761 CAGTGCACGGGAAGCAGC 61.731 66.667 12.01 0.00 43.63 5.25
1271 1306 4.254709 AGTGCACGGGAAGCAGCA 62.255 61.111 12.01 0.00 43.63 4.41
1272 1307 3.730761 GTGCACGGGAAGCAGCAG 61.731 66.667 0.00 0.00 43.63 4.24
1294 1349 0.814010 GCGGATAGGTGATGCCGTTT 60.814 55.000 0.00 0.00 45.22 3.60
1369 1431 4.587684 TGGCTGGTACTAGGAGTAAATAGC 59.412 45.833 8.46 8.43 34.85 2.97
1371 1433 5.509332 GGCTGGTACTAGGAGTAAATAGCAC 60.509 48.000 8.46 6.01 36.10 4.40
1373 1435 6.515365 GCTGGTACTAGGAGTAAATAGCACTC 60.515 46.154 8.46 0.00 41.43 3.51
1401 1463 3.496331 TCCTTTTCTCGGCCTTGATTTT 58.504 40.909 0.00 0.00 0.00 1.82
1412 1474 7.442364 TCTCGGCCTTGATTTTCTATAAATCTG 59.558 37.037 0.00 5.03 37.50 2.90
1432 1494 5.057149 TCTGGAAGAAAAGAAGAAAGGACG 58.943 41.667 0.00 0.00 42.31 4.79
1433 1495 3.564225 TGGAAGAAAAGAAGAAAGGACGC 59.436 43.478 0.00 0.00 0.00 5.19
1436 1498 3.403968 AGAAAAGAAGAAAGGACGCTCC 58.596 45.455 0.00 0.00 36.58 4.70
1438 1500 0.037232 AAGAAGAAAGGACGCTCCGG 60.037 55.000 0.00 0.00 42.75 5.14
1439 1501 1.448013 GAAGAAAGGACGCTCCGGG 60.448 63.158 0.00 0.00 42.75 5.73
1441 1503 2.434359 GAAAGGACGCTCCGGGTG 60.434 66.667 0.00 1.13 42.75 4.61
1453 1515 0.671796 TCCGGGTGTATATGCTCGTG 59.328 55.000 0.00 0.00 0.00 4.35
1455 1517 1.602165 CCGGGTGTATATGCTCGTGTC 60.602 57.143 0.00 0.00 0.00 3.67
1466 1528 6.925610 ATATGCTCGTGTCATGTTTATGTT 57.074 33.333 0.00 0.00 35.73 2.71
1467 1529 5.627499 ATGCTCGTGTCATGTTTATGTTT 57.373 34.783 0.00 0.00 35.73 2.83
1470 1532 5.912396 TGCTCGTGTCATGTTTATGTTTTTC 59.088 36.000 0.00 0.00 35.73 2.29
1477 1539 7.271223 GTGTCATGTTTATGTTTTTCATCGGAG 59.729 37.037 0.00 0.00 37.91 4.63
1480 1542 8.183536 TCATGTTTATGTTTTTCATCGGAGATG 58.816 33.333 3.78 3.78 37.11 2.90
1490 1552 2.106338 TCATCGGAGATGAGAGCTCTCT 59.894 50.000 36.78 25.09 45.12 3.10
1512 1582 0.179073 ACTCTAATTGAGCGCGGCAT 60.179 50.000 8.83 0.00 46.41 4.40
1563 1633 1.078709 TGTGCGCTCTTGTTATGCTC 58.921 50.000 9.73 0.00 0.00 4.26
1566 1636 1.695893 GCGCTCTTGTTATGCTCGCA 61.696 55.000 0.00 0.00 40.63 5.10
1577 1647 4.155644 TGTTATGCTCGCATTGTTGATTGA 59.844 37.500 9.94 0.00 37.82 2.57
1584 1654 5.680229 GCTCGCATTGTTGATTGAAGATAAG 59.320 40.000 0.00 0.00 0.00 1.73
1596 1666 6.986231 TGATTGAAGATAAGCGCTCTCAAATA 59.014 34.615 12.06 0.00 0.00 1.40
1623 1703 3.578688 GACATTGGCATTCCTCACAAAC 58.421 45.455 0.00 0.00 0.00 2.93
1660 1740 1.500474 TTCCGCCAGAGGAATCAGAT 58.500 50.000 0.00 0.00 44.66 2.90
1676 1758 4.868172 TCAGATGGGAATCTGGAATGTT 57.132 40.909 14.11 0.00 46.02 2.71
1703 1785 3.121279 CGGTCGTCAATGTACTCACAAAG 59.879 47.826 0.00 0.00 38.42 2.77
1719 1801 3.960755 CACAAAGGGAGGAAAAGGTCTTT 59.039 43.478 0.00 0.00 0.00 2.52
1767 1850 1.218844 TGCCAATACCTACCCTTCCC 58.781 55.000 0.00 0.00 0.00 3.97
1819 1914 4.319139 TGTTTGGATGGTTGTCAACATG 57.681 40.909 17.29 0.00 0.00 3.21
1844 1939 3.514645 GCCTGCACATGACTTTTATTGG 58.485 45.455 0.00 0.00 0.00 3.16
1845 1940 3.514645 CCTGCACATGACTTTTATTGGC 58.485 45.455 0.00 0.00 0.00 4.52
1856 1951 6.707290 TGACTTTTATTGGCAACTCTAGCTA 58.293 36.000 0.00 0.00 37.61 3.32
1916 2011 5.238214 GCAAAAGGTTGACCAAAATATTGCA 59.762 36.000 2.56 0.00 39.25 4.08
1973 2068 0.530288 CAAACATACCGGCCCCAAAG 59.470 55.000 0.00 0.00 0.00 2.77
2224 2319 5.179742 TGTGACGCAATATTTCTTTAACGGT 59.820 36.000 0.00 0.00 0.00 4.83
2225 2320 6.081693 GTGACGCAATATTTCTTTAACGGTT 58.918 36.000 0.00 0.00 0.00 4.44
2226 2321 6.032042 GTGACGCAATATTTCTTTAACGGTTG 59.968 38.462 3.07 0.00 0.00 3.77
2227 2322 4.854839 ACGCAATATTTCTTTAACGGTTGC 59.145 37.500 3.07 0.00 37.82 4.17
2228 2323 4.264380 CGCAATATTTCTTTAACGGTTGCC 59.736 41.667 3.07 0.00 37.89 4.52
2229 2324 4.565166 GCAATATTTCTTTAACGGTTGCCC 59.435 41.667 3.07 0.00 35.83 5.36
2230 2325 4.994907 ATATTTCTTTAACGGTTGCCCC 57.005 40.909 3.07 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.517013 ACTAGTACTACATGGAGATGGAGA 57.483 41.667 13.29 0.00 42.67 3.71
2 3 7.455058 ACTACTAGTACTACATGGAGATGGAG 58.545 42.308 13.29 6.07 45.26 3.86
3 4 7.390013 ACTACTAGTACTACATGGAGATGGA 57.610 40.000 13.29 0.00 33.39 3.41
4 5 9.386010 GATACTACTAGTACTACATGGAGATGG 57.614 40.741 13.29 1.70 32.84 3.51
5 6 9.945904 TGATACTACTAGTACTACATGGAGATG 57.054 37.037 13.29 0.00 32.84 2.90
7 8 9.156940 ACTGATACTACTAGTACTACATGGAGA 57.843 37.037 13.29 0.00 32.84 3.71
8 9 9.781633 AACTGATACTACTAGTACTACATGGAG 57.218 37.037 2.41 2.41 32.84 3.86
9 10 9.557061 CAACTGATACTACTAGTACTACATGGA 57.443 37.037 0.00 0.00 32.84 3.41
10 11 9.339850 ACAACTGATACTACTAGTACTACATGG 57.660 37.037 0.00 0.00 32.84 3.66
12 13 9.339850 CCACAACTGATACTACTAGTACTACAT 57.660 37.037 0.00 0.00 32.84 2.29
13 14 7.772292 CCCACAACTGATACTACTAGTACTACA 59.228 40.741 0.00 0.00 32.84 2.74
14 15 7.989741 TCCCACAACTGATACTACTAGTACTAC 59.010 40.741 0.00 0.00 32.84 2.73
15 16 8.094284 TCCCACAACTGATACTACTAGTACTA 57.906 38.462 1.89 1.89 32.84 1.82
16 17 6.966751 TCCCACAACTGATACTACTAGTACT 58.033 40.000 0.00 0.00 32.84 2.73
17 18 7.820578 ATCCCACAACTGATACTACTAGTAC 57.179 40.000 0.00 0.00 32.84 2.73
18 19 8.280084 AGAATCCCACAACTGATACTACTAGTA 58.720 37.037 1.89 1.89 34.82 1.82
19 20 7.126733 AGAATCCCACAACTGATACTACTAGT 58.873 38.462 0.00 0.00 0.00 2.57
20 21 7.589958 AGAATCCCACAACTGATACTACTAG 57.410 40.000 0.00 0.00 0.00 2.57
21 22 8.910944 GTTAGAATCCCACAACTGATACTACTA 58.089 37.037 0.00 0.00 0.00 1.82
22 23 7.620094 AGTTAGAATCCCACAACTGATACTACT 59.380 37.037 0.00 0.00 30.28 2.57
23 24 7.783042 AGTTAGAATCCCACAACTGATACTAC 58.217 38.462 0.00 0.00 30.28 2.73
24 25 7.973048 AGTTAGAATCCCACAACTGATACTA 57.027 36.000 0.00 0.00 30.28 1.82
25 26 6.875972 AGTTAGAATCCCACAACTGATACT 57.124 37.500 0.00 0.00 30.28 2.12
26 27 7.606456 TCAAAGTTAGAATCCCACAACTGATAC 59.394 37.037 0.00 0.00 31.80 2.24
27 28 7.685481 TCAAAGTTAGAATCCCACAACTGATA 58.315 34.615 0.00 0.00 31.80 2.15
28 29 6.542821 TCAAAGTTAGAATCCCACAACTGAT 58.457 36.000 0.00 0.00 31.80 2.90
29 30 5.935945 TCAAAGTTAGAATCCCACAACTGA 58.064 37.500 0.00 0.00 31.80 3.41
30 31 6.430925 TCATCAAAGTTAGAATCCCACAACTG 59.569 38.462 0.00 0.00 31.80 3.16
31 32 6.542821 TCATCAAAGTTAGAATCCCACAACT 58.457 36.000 0.00 0.00 32.73 3.16
32 33 6.817765 TCATCAAAGTTAGAATCCCACAAC 57.182 37.500 0.00 0.00 0.00 3.32
33 34 8.421249 AATTCATCAAAGTTAGAATCCCACAA 57.579 30.769 0.00 0.00 30.87 3.33
34 35 8.421249 AAATTCATCAAAGTTAGAATCCCACA 57.579 30.769 0.00 0.00 30.87 4.17
35 36 8.522830 TGAAATTCATCAAAGTTAGAATCCCAC 58.477 33.333 0.00 0.00 30.87 4.61
36 37 8.648698 TGAAATTCATCAAAGTTAGAATCCCA 57.351 30.769 0.00 0.00 30.87 4.37
37 38 9.525409 CATGAAATTCATCAAAGTTAGAATCCC 57.475 33.333 5.36 0.00 34.28 3.85
41 42 9.611284 CGTTCATGAAATTCATCAAAGTTAGAA 57.389 29.630 10.35 1.73 34.28 2.10
42 43 8.236586 CCGTTCATGAAATTCATCAAAGTTAGA 58.763 33.333 10.35 0.00 34.28 2.10
43 44 8.023128 ACCGTTCATGAAATTCATCAAAGTTAG 58.977 33.333 10.35 0.00 34.28 2.34
44 45 7.807433 CACCGTTCATGAAATTCATCAAAGTTA 59.193 33.333 10.35 0.00 34.28 2.24
45 46 6.642131 CACCGTTCATGAAATTCATCAAAGTT 59.358 34.615 10.35 0.00 34.28 2.66
46 47 6.151691 CACCGTTCATGAAATTCATCAAAGT 58.848 36.000 10.35 0.00 34.28 2.66
47 48 6.151691 ACACCGTTCATGAAATTCATCAAAG 58.848 36.000 10.35 1.97 34.28 2.77
48 49 6.016360 AGACACCGTTCATGAAATTCATCAAA 60.016 34.615 10.35 1.18 34.28 2.69
49 50 5.473162 AGACACCGTTCATGAAATTCATCAA 59.527 36.000 10.35 0.00 34.28 2.57
50 51 5.003160 AGACACCGTTCATGAAATTCATCA 58.997 37.500 10.35 0.00 34.28 3.07
51 52 5.551760 AGACACCGTTCATGAAATTCATC 57.448 39.130 10.35 5.99 34.28 2.92
52 53 5.964958 AAGACACCGTTCATGAAATTCAT 57.035 34.783 10.35 2.07 37.65 2.57
53 54 5.766150 AAAGACACCGTTCATGAAATTCA 57.234 34.783 10.35 0.00 0.00 2.57
54 55 6.360681 CAGAAAAGACACCGTTCATGAAATTC 59.639 38.462 10.35 2.65 0.00 2.17
55 56 6.208644 CAGAAAAGACACCGTTCATGAAATT 58.791 36.000 10.35 0.00 0.00 1.82
56 57 5.278463 CCAGAAAAGACACCGTTCATGAAAT 60.278 40.000 10.35 0.00 0.00 2.17
57 58 4.036262 CCAGAAAAGACACCGTTCATGAAA 59.964 41.667 10.35 0.00 0.00 2.69
58 59 3.563808 CCAGAAAAGACACCGTTCATGAA 59.436 43.478 3.38 3.38 0.00 2.57
59 60 3.138304 CCAGAAAAGACACCGTTCATGA 58.862 45.455 0.00 0.00 0.00 3.07
60 61 2.878406 ACCAGAAAAGACACCGTTCATG 59.122 45.455 0.00 0.00 0.00 3.07
61 62 2.878406 CACCAGAAAAGACACCGTTCAT 59.122 45.455 0.00 0.00 0.00 2.57
62 63 2.093394 TCACCAGAAAAGACACCGTTCA 60.093 45.455 0.00 0.00 0.00 3.18
63 64 2.287103 GTCACCAGAAAAGACACCGTTC 59.713 50.000 0.00 0.00 32.68 3.95
64 65 2.093128 AGTCACCAGAAAAGACACCGTT 60.093 45.455 0.00 0.00 34.80 4.44
65 66 1.485066 AGTCACCAGAAAAGACACCGT 59.515 47.619 0.00 0.00 34.80 4.83
66 67 2.240493 AGTCACCAGAAAAGACACCG 57.760 50.000 0.00 0.00 34.80 4.94
67 68 4.957296 TCTAAGTCACCAGAAAAGACACC 58.043 43.478 0.00 0.00 34.80 4.16
68 69 6.223852 TCATCTAAGTCACCAGAAAAGACAC 58.776 40.000 0.00 0.00 34.80 3.67
69 70 6.419484 TCATCTAAGTCACCAGAAAAGACA 57.581 37.500 0.00 0.00 34.80 3.41
70 71 7.604164 TCAATCATCTAAGTCACCAGAAAAGAC 59.396 37.037 0.00 0.00 0.00 3.01
71 72 7.679783 TCAATCATCTAAGTCACCAGAAAAGA 58.320 34.615 0.00 0.00 0.00 2.52
72 73 7.912056 TCAATCATCTAAGTCACCAGAAAAG 57.088 36.000 0.00 0.00 0.00 2.27
73 74 7.337689 CCATCAATCATCTAAGTCACCAGAAAA 59.662 37.037 0.00 0.00 0.00 2.29
74 75 6.825213 CCATCAATCATCTAAGTCACCAGAAA 59.175 38.462 0.00 0.00 0.00 2.52
75 76 6.351711 CCATCAATCATCTAAGTCACCAGAA 58.648 40.000 0.00 0.00 0.00 3.02
76 77 5.685861 GCCATCAATCATCTAAGTCACCAGA 60.686 44.000 0.00 0.00 0.00 3.86
77 78 4.514441 GCCATCAATCATCTAAGTCACCAG 59.486 45.833 0.00 0.00 0.00 4.00
78 79 4.080413 TGCCATCAATCATCTAAGTCACCA 60.080 41.667 0.00 0.00 0.00 4.17
79 80 4.454678 TGCCATCAATCATCTAAGTCACC 58.545 43.478 0.00 0.00 0.00 4.02
80 81 6.317140 TCTTTGCCATCAATCATCTAAGTCAC 59.683 38.462 0.00 0.00 31.33 3.67
81 82 6.417258 TCTTTGCCATCAATCATCTAAGTCA 58.583 36.000 0.00 0.00 31.33 3.41
82 83 6.765036 TCTCTTTGCCATCAATCATCTAAGTC 59.235 38.462 0.00 0.00 31.33 3.01
83 84 6.656902 TCTCTTTGCCATCAATCATCTAAGT 58.343 36.000 0.00 0.00 31.33 2.24
84 85 6.990939 TCTCTCTTTGCCATCAATCATCTAAG 59.009 38.462 0.00 0.00 31.33 2.18
85 86 6.892485 TCTCTCTTTGCCATCAATCATCTAA 58.108 36.000 0.00 0.00 31.33 2.10
86 87 6.490241 TCTCTCTTTGCCATCAATCATCTA 57.510 37.500 0.00 0.00 31.33 1.98
87 88 5.369409 TCTCTCTTTGCCATCAATCATCT 57.631 39.130 0.00 0.00 31.33 2.90
88 89 6.446781 TTTCTCTCTTTGCCATCAATCATC 57.553 37.500 0.00 0.00 31.33 2.92
89 90 6.380274 ACATTTCTCTCTTTGCCATCAATCAT 59.620 34.615 0.00 0.00 31.33 2.45
90 91 5.713389 ACATTTCTCTCTTTGCCATCAATCA 59.287 36.000 0.00 0.00 31.33 2.57
91 92 6.205101 ACATTTCTCTCTTTGCCATCAATC 57.795 37.500 0.00 0.00 31.33 2.67
92 93 6.600882 AACATTTCTCTCTTTGCCATCAAT 57.399 33.333 0.00 0.00 31.33 2.57
93 94 6.266103 AGAAACATTTCTCTCTTTGCCATCAA 59.734 34.615 0.87 0.00 43.72 2.57
94 95 5.771666 AGAAACATTTCTCTCTTTGCCATCA 59.228 36.000 0.87 0.00 43.72 3.07
95 96 6.072286 TCAGAAACATTTCTCTCTTTGCCATC 60.072 38.462 3.84 0.00 45.23 3.51
96 97 5.771666 TCAGAAACATTTCTCTCTTTGCCAT 59.228 36.000 3.84 0.00 45.23 4.40
97 98 5.132502 TCAGAAACATTTCTCTCTTTGCCA 58.867 37.500 3.84 0.00 45.23 4.92
98 99 5.695851 TCAGAAACATTTCTCTCTTTGCC 57.304 39.130 3.84 0.00 45.23 4.52
99 100 9.852091 AATAATCAGAAACATTTCTCTCTTTGC 57.148 29.630 3.84 0.00 45.23 3.68
103 104 9.393512 CCAGAATAATCAGAAACATTTCTCTCT 57.606 33.333 3.84 0.00 45.23 3.10
104 105 9.171877 ACCAGAATAATCAGAAACATTTCTCTC 57.828 33.333 3.84 0.00 45.23 3.20
110 111 9.685276 TCATGTACCAGAATAATCAGAAACATT 57.315 29.630 0.00 0.00 0.00 2.71
111 112 9.113838 GTCATGTACCAGAATAATCAGAAACAT 57.886 33.333 0.00 0.00 0.00 2.71
112 113 8.321353 AGTCATGTACCAGAATAATCAGAAACA 58.679 33.333 0.00 0.00 0.00 2.83
113 114 8.723942 AGTCATGTACCAGAATAATCAGAAAC 57.276 34.615 0.00 0.00 0.00 2.78
115 116 9.421399 TCTAGTCATGTACCAGAATAATCAGAA 57.579 33.333 0.00 0.00 0.00 3.02
116 117 8.996651 TCTAGTCATGTACCAGAATAATCAGA 57.003 34.615 0.00 0.00 0.00 3.27
117 118 9.636879 CATCTAGTCATGTACCAGAATAATCAG 57.363 37.037 0.00 0.00 29.25 2.90
118 119 9.367160 TCATCTAGTCATGTACCAGAATAATCA 57.633 33.333 0.00 0.00 29.25 2.57
121 122 9.593565 AGATCATCTAGTCATGTACCAGAATAA 57.406 33.333 0.00 0.00 29.25 1.40
122 123 9.593565 AAGATCATCTAGTCATGTACCAGAATA 57.406 33.333 0.00 0.00 29.25 1.75
123 124 8.489676 AAGATCATCTAGTCATGTACCAGAAT 57.510 34.615 0.00 0.00 29.25 2.40
124 125 7.782168 AGAAGATCATCTAGTCATGTACCAGAA 59.218 37.037 0.00 0.00 29.25 3.02
125 126 7.230309 CAGAAGATCATCTAGTCATGTACCAGA 59.770 40.741 0.00 0.00 30.05 3.86
126 127 7.230309 TCAGAAGATCATCTAGTCATGTACCAG 59.770 40.741 0.00 0.00 0.00 4.00
127 128 7.062957 TCAGAAGATCATCTAGTCATGTACCA 58.937 38.462 0.00 0.00 0.00 3.25
128 129 7.517614 TCAGAAGATCATCTAGTCATGTACC 57.482 40.000 0.00 0.00 0.00 3.34
129 130 7.594758 GCTTCAGAAGATCATCTAGTCATGTAC 59.405 40.741 14.86 0.00 0.00 2.90
130 131 7.286316 TGCTTCAGAAGATCATCTAGTCATGTA 59.714 37.037 14.86 0.00 0.00 2.29
131 132 6.097981 TGCTTCAGAAGATCATCTAGTCATGT 59.902 38.462 14.86 0.00 0.00 3.21
132 133 6.514063 TGCTTCAGAAGATCATCTAGTCATG 58.486 40.000 14.86 0.00 0.00 3.07
133 134 6.728089 TGCTTCAGAAGATCATCTAGTCAT 57.272 37.500 14.86 0.00 0.00 3.06
134 135 6.550481 AGATGCTTCAGAAGATCATCTAGTCA 59.450 38.462 22.43 6.81 40.03 3.41
135 136 6.985117 AGATGCTTCAGAAGATCATCTAGTC 58.015 40.000 22.43 6.09 40.03 2.59
136 137 6.982160 AGATGCTTCAGAAGATCATCTAGT 57.018 37.500 22.43 7.77 40.03 2.57
137 138 7.315142 GGTAGATGCTTCAGAAGATCATCTAG 58.685 42.308 25.89 0.00 41.75 2.43
138 139 6.072230 CGGTAGATGCTTCAGAAGATCATCTA 60.072 42.308 23.60 23.60 41.08 1.98
139 140 5.278907 CGGTAGATGCTTCAGAAGATCATCT 60.279 44.000 24.99 24.99 42.25 2.90
140 141 4.922692 CGGTAGATGCTTCAGAAGATCATC 59.077 45.833 14.86 16.26 35.81 2.92
141 142 4.262377 CCGGTAGATGCTTCAGAAGATCAT 60.262 45.833 14.86 8.53 0.00 2.45
142 143 3.068732 CCGGTAGATGCTTCAGAAGATCA 59.931 47.826 14.86 3.67 0.00 2.92
143 144 3.319405 TCCGGTAGATGCTTCAGAAGATC 59.681 47.826 14.86 12.90 0.00 2.75
144 145 3.300388 TCCGGTAGATGCTTCAGAAGAT 58.700 45.455 14.86 4.73 0.00 2.40
145 146 2.690497 CTCCGGTAGATGCTTCAGAAGA 59.310 50.000 14.86 0.00 0.00 2.87
146 147 2.690497 TCTCCGGTAGATGCTTCAGAAG 59.310 50.000 5.72 5.72 0.00 2.85
147 148 2.690497 CTCTCCGGTAGATGCTTCAGAA 59.310 50.000 0.00 0.00 32.41 3.02
148 149 2.092375 TCTCTCCGGTAGATGCTTCAGA 60.092 50.000 0.00 0.00 32.41 3.27
149 150 2.302260 TCTCTCCGGTAGATGCTTCAG 58.698 52.381 0.00 0.00 32.41 3.02
150 151 2.437085 TCTCTCCGGTAGATGCTTCA 57.563 50.000 0.00 0.00 32.41 3.02
151 152 3.296322 CATCTCTCCGGTAGATGCTTC 57.704 52.381 25.87 0.00 42.73 3.86
156 157 1.528292 GGCGCATCTCTCCGGTAGAT 61.528 60.000 10.83 14.02 33.94 1.98
157 158 2.194212 GGCGCATCTCTCCGGTAGA 61.194 63.158 10.83 10.93 0.00 2.59
158 159 2.336809 GGCGCATCTCTCCGGTAG 59.663 66.667 10.83 0.00 0.00 3.18
159 160 3.592814 CGGCGCATCTCTCCGGTA 61.593 66.667 10.83 0.00 39.52 4.02
161 162 3.716539 TTTCGGCGCATCTCTCCGG 62.717 63.158 10.83 0.00 43.10 5.14
162 163 1.809619 TTTTCGGCGCATCTCTCCG 60.810 57.895 10.83 0.75 44.16 4.63
163 164 1.716172 GTTTTCGGCGCATCTCTCC 59.284 57.895 10.83 0.00 0.00 3.71
164 165 1.076533 TCGTTTTCGGCGCATCTCTC 61.077 55.000 10.83 0.00 44.25 3.20
165 166 1.078759 CTCGTTTTCGGCGCATCTCT 61.079 55.000 10.83 0.00 44.25 3.10
166 167 1.345176 CTCGTTTTCGGCGCATCTC 59.655 57.895 10.83 0.00 44.25 2.75
167 168 1.374252 ACTCGTTTTCGGCGCATCT 60.374 52.632 10.83 0.00 44.25 2.90
168 169 1.225745 CACTCGTTTTCGGCGCATC 60.226 57.895 10.83 0.00 44.25 3.91
169 170 0.668096 TACACTCGTTTTCGGCGCAT 60.668 50.000 10.83 0.00 44.25 4.73
170 171 0.668096 ATACACTCGTTTTCGGCGCA 60.668 50.000 10.83 0.00 44.25 6.09
171 172 0.247145 CATACACTCGTTTTCGGCGC 60.247 55.000 0.00 0.00 44.25 6.53
172 173 1.065358 ACATACACTCGTTTTCGGCG 58.935 50.000 0.00 0.00 44.25 6.46
173 174 3.060363 CACTACATACACTCGTTTTCGGC 59.940 47.826 0.00 0.00 44.25 5.54
174 175 3.060363 GCACTACATACACTCGTTTTCGG 59.940 47.826 0.00 0.00 44.25 4.30
175 176 3.060363 GGCACTACATACACTCGTTTTCG 59.940 47.826 0.00 0.00 45.64 3.46
176 177 3.060363 CGGCACTACATACACTCGTTTTC 59.940 47.826 0.00 0.00 0.00 2.29
177 178 2.991190 CGGCACTACATACACTCGTTTT 59.009 45.455 0.00 0.00 0.00 2.43
178 179 2.029649 ACGGCACTACATACACTCGTTT 60.030 45.455 0.00 0.00 0.00 3.60
179 180 1.542915 ACGGCACTACATACACTCGTT 59.457 47.619 0.00 0.00 0.00 3.85
180 181 1.171308 ACGGCACTACATACACTCGT 58.829 50.000 0.00 0.00 0.00 4.18
181 182 3.620929 ATACGGCACTACATACACTCG 57.379 47.619 0.00 0.00 0.00 4.18
182 183 6.657836 AAAAATACGGCACTACATACACTC 57.342 37.500 0.00 0.00 0.00 3.51
183 184 6.536224 GGTAAAAATACGGCACTACATACACT 59.464 38.462 0.00 0.00 0.00 3.55
184 185 6.238184 GGGTAAAAATACGGCACTACATACAC 60.238 42.308 0.00 0.00 0.00 2.90
185 186 5.816777 GGGTAAAAATACGGCACTACATACA 59.183 40.000 0.00 0.00 0.00 2.29
186 187 6.018507 CAGGGTAAAAATACGGCACTACATAC 60.019 42.308 0.00 0.00 0.00 2.39
187 188 6.050432 CAGGGTAAAAATACGGCACTACATA 58.950 40.000 0.00 0.00 0.00 2.29
188 189 4.879545 CAGGGTAAAAATACGGCACTACAT 59.120 41.667 0.00 0.00 0.00 2.29
189 190 4.255301 CAGGGTAAAAATACGGCACTACA 58.745 43.478 0.00 0.00 0.00 2.74
190 191 4.256110 ACAGGGTAAAAATACGGCACTAC 58.744 43.478 0.00 0.00 0.00 2.73
191 192 4.556592 ACAGGGTAAAAATACGGCACTA 57.443 40.909 0.00 0.00 0.00 2.74
192 193 3.428413 ACAGGGTAAAAATACGGCACT 57.572 42.857 0.00 0.00 0.00 4.40
193 194 4.508461 AAACAGGGTAAAAATACGGCAC 57.492 40.909 0.00 0.00 0.00 5.01
194 195 4.458642 GGTAAACAGGGTAAAAATACGGCA 59.541 41.667 0.00 0.00 0.00 5.69
195 196 4.437255 CGGTAAACAGGGTAAAAATACGGC 60.437 45.833 0.00 0.00 0.00 5.68
196 197 4.094739 CCGGTAAACAGGGTAAAAATACGG 59.905 45.833 0.00 0.00 0.00 4.02
197 198 4.437255 GCCGGTAAACAGGGTAAAAATACG 60.437 45.833 1.90 0.00 0.00 3.06
198 199 4.458642 TGCCGGTAAACAGGGTAAAAATAC 59.541 41.667 1.90 0.00 0.00 1.89
199 200 4.660168 TGCCGGTAAACAGGGTAAAAATA 58.340 39.130 1.90 0.00 0.00 1.40
200 201 3.498334 TGCCGGTAAACAGGGTAAAAAT 58.502 40.909 1.90 0.00 0.00 1.82
201 202 2.941480 TGCCGGTAAACAGGGTAAAAA 58.059 42.857 1.90 0.00 0.00 1.94
202 203 2.653234 TGCCGGTAAACAGGGTAAAA 57.347 45.000 1.90 0.00 0.00 1.52
203 204 2.618559 GGATGCCGGTAAACAGGGTAAA 60.619 50.000 1.90 0.00 0.00 2.01
204 205 1.065272 GGATGCCGGTAAACAGGGTAA 60.065 52.381 1.90 0.00 0.00 2.85
205 206 0.542805 GGATGCCGGTAAACAGGGTA 59.457 55.000 1.90 0.00 0.00 3.69
206 207 1.301954 GGATGCCGGTAAACAGGGT 59.698 57.895 1.90 0.00 0.00 4.34
207 208 1.817941 CGGATGCCGGTAAACAGGG 60.818 63.158 1.90 0.00 44.15 4.45
208 209 3.808036 CGGATGCCGGTAAACAGG 58.192 61.111 1.90 0.00 44.15 4.00
218 219 1.523154 TTTTCACTGTGCCGGATGCC 61.523 55.000 5.05 0.00 40.16 4.40
219 220 0.527565 ATTTTCACTGTGCCGGATGC 59.472 50.000 5.05 0.00 41.77 3.91
220 221 1.202065 CGATTTTCACTGTGCCGGATG 60.202 52.381 5.05 0.00 0.00 3.51
221 222 1.086696 CGATTTTCACTGTGCCGGAT 58.913 50.000 5.05 0.00 0.00 4.18
222 223 0.250124 ACGATTTTCACTGTGCCGGA 60.250 50.000 5.05 0.00 0.00 5.14
223 224 0.165944 GACGATTTTCACTGTGCCGG 59.834 55.000 2.12 0.00 0.00 6.13
224 225 0.179250 CGACGATTTTCACTGTGCCG 60.179 55.000 2.12 4.23 0.00 5.69
225 226 0.865769 ACGACGATTTTCACTGTGCC 59.134 50.000 0.00 0.00 0.00 5.01
226 227 1.260561 ACACGACGATTTTCACTGTGC 59.739 47.619 0.00 0.00 0.00 4.57
227 228 3.279950 CAACACGACGATTTTCACTGTG 58.720 45.455 0.00 0.17 0.00 3.66
228 229 2.286833 CCAACACGACGATTTTCACTGT 59.713 45.455 0.00 0.00 0.00 3.55
229 230 2.542178 TCCAACACGACGATTTTCACTG 59.458 45.455 0.00 0.00 0.00 3.66
230 231 2.542595 GTCCAACACGACGATTTTCACT 59.457 45.455 0.00 0.00 0.00 3.41
231 232 2.542595 AGTCCAACACGACGATTTTCAC 59.457 45.455 0.00 0.00 37.85 3.18
232 233 2.542178 CAGTCCAACACGACGATTTTCA 59.458 45.455 0.00 0.00 37.85 2.69
233 234 2.798283 TCAGTCCAACACGACGATTTTC 59.202 45.455 0.00 0.00 37.85 2.29
238 239 0.249155 GGTTCAGTCCAACACGACGA 60.249 55.000 0.00 0.00 37.85 4.20
243 244 0.531974 TCGCTGGTTCAGTCCAACAC 60.532 55.000 0.00 0.00 37.01 3.32
244 245 0.249868 CTCGCTGGTTCAGTCCAACA 60.250 55.000 0.00 0.00 37.01 3.33
261 262 0.743688 TCGATCTGCTTCTGCCTCTC 59.256 55.000 0.00 0.00 38.71 3.20
297 301 1.402194 CGCATTAACGGCACATGGTTT 60.402 47.619 0.00 0.00 0.00 3.27
298 302 0.170116 CGCATTAACGGCACATGGTT 59.830 50.000 0.00 0.00 0.00 3.67
453 465 1.153745 CCGCTTCAGAGAGTTCGGG 60.154 63.158 0.00 0.00 33.85 5.14
581 598 0.099968 GACGCGTGCATGTACTCCTA 59.900 55.000 20.70 0.00 0.00 2.94
582 599 1.153823 GACGCGTGCATGTACTCCT 60.154 57.895 20.70 0.00 0.00 3.69
583 600 0.099968 TAGACGCGTGCATGTACTCC 59.900 55.000 20.70 0.00 0.00 3.85
584 601 1.467875 CTAGACGCGTGCATGTACTC 58.532 55.000 20.70 2.94 0.00 2.59
585 602 0.525668 GCTAGACGCGTGCATGTACT 60.526 55.000 20.70 8.24 0.00 2.73
586 603 0.525668 AGCTAGACGCGTGCATGTAC 60.526 55.000 20.70 3.51 45.59 2.90
701 720 0.034767 TCTCCGCTCCTCGTTTCCTA 60.035 55.000 0.00 0.00 36.19 2.94
707 726 3.137459 CTGCTCTCCGCTCCTCGT 61.137 66.667 0.00 0.00 40.11 4.18
717 736 0.244994 TCCGACTTTGCTCTGCTCTC 59.755 55.000 0.00 0.00 0.00 3.20
934 953 0.317854 GTGCTGGAAAAACAGACGGC 60.318 55.000 0.00 0.00 40.97 5.68
1031 1061 1.150536 CCTCCTCCTCCTCCTCTCG 59.849 68.421 0.00 0.00 0.00 4.04
1034 1064 2.015726 TCCCCTCCTCCTCCTCCTC 61.016 68.421 0.00 0.00 0.00 3.71
1035 1065 2.018086 CTCCCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
1036 1066 2.612251 CTCCCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
1235 1270 2.425312 ACTGATCTGATCTGACGGTCAC 59.575 50.000 25.34 0.00 33.12 3.67
1239 1274 1.135721 TGCACTGATCTGATCTGACGG 59.864 52.381 25.34 16.48 33.12 4.79
1240 1275 2.191802 GTGCACTGATCTGATCTGACG 58.808 52.381 25.34 17.70 33.12 4.35
1241 1276 2.191802 CGTGCACTGATCTGATCTGAC 58.808 52.381 25.34 18.02 33.12 3.51
1242 1277 1.135721 CCGTGCACTGATCTGATCTGA 59.864 52.381 25.34 4.63 33.12 3.27
1243 1278 1.568606 CCGTGCACTGATCTGATCTG 58.431 55.000 16.19 19.23 0.00 2.90
1244 1279 0.463204 CCCGTGCACTGATCTGATCT 59.537 55.000 16.19 0.00 0.00 2.75
1245 1280 0.461548 TCCCGTGCACTGATCTGATC 59.538 55.000 16.19 10.72 0.00 2.92
1246 1281 0.904649 TTCCCGTGCACTGATCTGAT 59.095 50.000 16.19 0.00 0.00 2.90
1247 1282 0.247460 CTTCCCGTGCACTGATCTGA 59.753 55.000 16.19 0.00 0.00 3.27
1248 1283 1.364626 GCTTCCCGTGCACTGATCTG 61.365 60.000 16.19 0.00 0.00 2.90
1250 1285 1.364626 CTGCTTCCCGTGCACTGATC 61.365 60.000 16.19 7.07 36.37 2.92
1251 1286 1.376424 CTGCTTCCCGTGCACTGAT 60.376 57.895 16.19 0.00 36.37 2.90
1252 1287 2.031012 CTGCTTCCCGTGCACTGA 59.969 61.111 16.19 8.58 36.37 3.41
1253 1288 3.730761 GCTGCTTCCCGTGCACTG 61.731 66.667 16.19 8.49 36.37 3.66
1254 1289 4.254709 TGCTGCTTCCCGTGCACT 62.255 61.111 16.19 0.00 36.37 4.40
1264 1299 4.161295 TATCCGCCGCTGCTGCTT 62.161 61.111 14.02 2.00 36.97 3.91
1265 1300 4.598894 CTATCCGCCGCTGCTGCT 62.599 66.667 14.02 0.00 36.97 4.24
1267 1302 4.227134 ACCTATCCGCCGCTGCTG 62.227 66.667 0.00 0.00 34.43 4.41
1268 1303 4.227134 CACCTATCCGCCGCTGCT 62.227 66.667 0.00 0.00 34.43 4.24
1269 1304 3.521529 ATCACCTATCCGCCGCTGC 62.522 63.158 0.00 0.00 0.00 5.25
1270 1305 1.665916 CATCACCTATCCGCCGCTG 60.666 63.158 0.00 0.00 0.00 5.18
1271 1306 2.737180 CATCACCTATCCGCCGCT 59.263 61.111 0.00 0.00 0.00 5.52
1272 1307 3.044305 GCATCACCTATCCGCCGC 61.044 66.667 0.00 0.00 0.00 6.53
1273 1308 2.357517 GGCATCACCTATCCGCCG 60.358 66.667 0.00 0.00 34.51 6.46
1276 1311 0.937304 CAAACGGCATCACCTATCCG 59.063 55.000 0.00 0.00 46.61 4.18
1277 1312 0.663153 GCAAACGGCATCACCTATCC 59.337 55.000 0.00 0.00 43.97 2.59
1278 1313 3.329932 ATGGCAAACGGCATCACCTATC 61.330 50.000 0.00 0.00 45.95 2.08
1280 1315 0.034574 ATGGCAAACGGCATCACCTA 60.035 50.000 0.00 0.00 45.95 3.08
1294 1349 2.809010 CATTGCATGGCGATGGCA 59.191 55.556 10.93 6.31 44.24 4.92
1369 1431 3.617263 CCGAGAAAAGGAATTACGGAGTG 59.383 47.826 0.00 0.00 45.73 3.51
1371 1433 2.608090 GCCGAGAAAAGGAATTACGGAG 59.392 50.000 0.00 0.00 41.09 4.63
1373 1435 1.669265 GGCCGAGAAAAGGAATTACGG 59.331 52.381 0.00 0.00 41.44 4.02
1374 1436 2.629051 AGGCCGAGAAAAGGAATTACG 58.371 47.619 0.00 0.00 0.00 3.18
1412 1474 3.815962 AGCGTCCTTTCTTCTTTTCTTCC 59.184 43.478 0.00 0.00 0.00 3.46
1419 1481 0.037232 CCGGAGCGTCCTTTCTTCTT 60.037 55.000 0.00 0.00 33.30 2.52
1429 1491 0.666577 GCATATACACCCGGAGCGTC 60.667 60.000 0.73 0.00 0.00 5.19
1432 1494 0.388649 CGAGCATATACACCCGGAGC 60.389 60.000 0.73 0.00 0.00 4.70
1433 1495 0.959553 ACGAGCATATACACCCGGAG 59.040 55.000 0.73 0.00 0.00 4.63
1436 1498 1.066454 TGACACGAGCATATACACCCG 59.934 52.381 0.00 0.00 0.00 5.28
1438 1500 3.717707 ACATGACACGAGCATATACACC 58.282 45.455 0.00 0.00 0.00 4.16
1439 1501 5.718649 AAACATGACACGAGCATATACAC 57.281 39.130 0.00 0.00 0.00 2.90
1441 1503 7.408132 ACATAAACATGACACGAGCATATAC 57.592 36.000 0.00 0.00 0.00 1.47
1453 1515 7.526608 TCTCCGATGAAAAACATAAACATGAC 58.473 34.615 0.00 0.00 39.56 3.06
1455 1517 8.183536 TCATCTCCGATGAAAAACATAAACATG 58.816 33.333 4.19 0.00 39.56 3.21
1466 1528 3.703556 AGAGCTCTCATCTCCGATGAAAA 59.296 43.478 11.45 0.00 0.00 2.29
1467 1529 3.295093 AGAGCTCTCATCTCCGATGAAA 58.705 45.455 11.45 0.00 0.00 2.69
1470 1532 2.507484 AGAGAGCTCTCATCTCCGATG 58.493 52.381 38.20 0.00 43.53 3.84
1477 1539 8.629158 TCAATTAGAGTTTAGAGAGCTCTCATC 58.371 37.037 38.20 26.79 41.53 2.92
1480 1542 6.918022 GCTCAATTAGAGTTTAGAGAGCTCTC 59.082 42.308 32.45 32.45 41.53 3.20
1490 1552 1.931172 GCCGCGCTCAATTAGAGTTTA 59.069 47.619 5.56 0.00 46.47 2.01
1525 1595 4.413969 CACACATTTGCGAGAAATGCATA 58.586 39.130 16.19 0.00 42.84 3.14
1563 1633 4.435554 CGCTTATCTTCAATCAACAATGCG 59.564 41.667 0.00 0.00 0.00 4.73
1566 1636 5.587844 AGAGCGCTTATCTTCAATCAACAAT 59.412 36.000 13.26 0.00 0.00 2.71
1596 1666 1.027357 GGAATGCCAATGTCGCTCAT 58.973 50.000 0.00 0.00 38.57 2.90
1600 1670 0.099436 GTGAGGAATGCCAATGTCGC 59.901 55.000 0.00 0.00 36.29 5.19
1623 1703 0.886490 AAAACTCCTCACAGCCAGCG 60.886 55.000 0.00 0.00 0.00 5.18
1660 1740 1.076841 TGCCAACATTCCAGATTCCCA 59.923 47.619 0.00 0.00 0.00 4.37
1676 1758 0.668096 GTACATTGACGACCGTGCCA 60.668 55.000 0.00 0.00 0.00 4.92
1719 1801 4.100189 CCAAACACACCATAAGTCCCAAAA 59.900 41.667 0.00 0.00 0.00 2.44
1731 1813 0.749649 GCAACCATCCAAACACACCA 59.250 50.000 0.00 0.00 0.00 4.17
1794 1889 1.336440 TGACAACCATCCAAACAAGCG 59.664 47.619 0.00 0.00 0.00 4.68
1796 1891 4.383850 TGTTGACAACCATCCAAACAAG 57.616 40.909 15.59 0.00 0.00 3.16
1819 1914 0.675633 AAAGTCATGTGCAGGCCAAC 59.324 50.000 5.01 0.00 0.00 3.77
1844 1939 9.974750 CTGTTTAAATAGTTTAGCTAGAGTTGC 57.025 33.333 3.91 0.00 32.45 4.17
1916 2011 5.440207 AGCCCAATCAAAATTTTGGCTAT 57.560 34.783 26.45 13.04 43.69 2.97
1968 2063 3.435671 GGACAACGGTTAGACATCTTTGG 59.564 47.826 0.00 0.00 0.00 3.28
1973 2068 5.873164 AGTTATTGGACAACGGTTAGACATC 59.127 40.000 0.00 0.00 0.00 3.06
2091 2186 8.425703 TCAGGAAAAAGTAAACTAAAAATGGGG 58.574 33.333 0.00 0.00 0.00 4.96
2191 2286 1.495584 ATTGCGTCACACGTGTGTCC 61.496 55.000 39.25 30.19 44.73 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.