Multiple sequence alignment - TraesCS3D01G106700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G106700 chr3D 100.000 3918 0 0 1 3918 58754047 58757964 0.000000e+00 7236
1 TraesCS3D01G106700 chr3D 88.312 154 17 1 3717 3869 375193759 375193912 2.400000e-42 183
2 TraesCS3D01G106700 chr3B 93.405 2866 116 33 860 3668 94666226 94669075 0.000000e+00 4178
3 TraesCS3D01G106700 chr3A 93.482 1657 64 19 2032 3668 67912177 67913809 0.000000e+00 2422
4 TraesCS3D01G106700 chr3A 92.426 1360 68 19 703 2034 67910768 67912120 0.000000e+00 1908
5 TraesCS3D01G106700 chr3A 80.959 709 104 19 1576 2258 164279270 164278567 2.070000e-147 532
6 TraesCS3D01G106700 chr3A 88.976 254 14 5 3665 3918 67913838 67914077 6.360000e-78 302
7 TraesCS3D01G106700 chr3A 90.260 154 14 1 3715 3867 383691086 383690933 2.390000e-47 200
8 TraesCS3D01G106700 chrUn 86.262 313 20 4 2648 2938 3120880 3120569 6.320000e-83 318
9 TraesCS3D01G106700 chr7B 90.323 155 13 2 3713 3867 477814817 477814969 6.640000e-48 202
10 TraesCS3D01G106700 chr1A 90.196 153 13 2 3717 3867 459273383 459273231 8.590000e-47 198
11 TraesCS3D01G106700 chr4B 89.610 154 14 2 3713 3864 146469212 146469365 1.110000e-45 195
12 TraesCS3D01G106700 chr5B 88.462 156 14 3 3716 3868 299602376 299602222 6.690000e-43 185
13 TraesCS3D01G106700 chr7D 87.975 158 16 2 3713 3867 454079073 454079230 2.400000e-42 183
14 TraesCS3D01G106700 chr6A 87.898 157 17 2 3711 3865 117350656 117350812 2.400000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G106700 chr3D 58754047 58757964 3917 False 7236 7236 100.000 1 3918 1 chr3D.!!$F1 3917
1 TraesCS3D01G106700 chr3B 94666226 94669075 2849 False 4178 4178 93.405 860 3668 1 chr3B.!!$F1 2808
2 TraesCS3D01G106700 chr3A 67910768 67914077 3309 False 1544 2422 91.628 703 3918 3 chr3A.!!$F1 3215
3 TraesCS3D01G106700 chr3A 164278567 164279270 703 True 532 532 80.959 1576 2258 1 chr3A.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
547 548 0.036448 TTGAAACCGCCCAATACCGA 59.964 50.0 0.00 0.00 0.00 4.69 F
584 585 0.105039 CCGGAGCTAATGGACCAGTC 59.895 60.0 0.00 0.00 0.00 3.51 F
614 615 0.175531 GCCTCTGAAGTGGAGAGCTC 59.824 60.0 5.27 5.27 36.40 4.09 F
788 789 0.550914 TGGAATTCCGCTAGCCCAAT 59.449 50.0 19.57 4.52 39.43 3.16 F
820 822 0.660300 CGCACTCGCCAACTTTTTCC 60.660 55.0 0.00 0.00 33.11 3.13 F
1378 1393 0.819259 GCAGGTTTGGTGTGAGCTCA 60.819 55.0 13.74 13.74 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 1383 0.801251 GACAAGGCATGAGCTCACAC 59.199 55.000 20.97 13.99 41.70 3.82 R
2216 2357 1.677576 CGGCCATGAAAGCATACATGT 59.322 47.619 2.24 2.69 41.26 3.21 R
2436 2579 2.507058 TGCCAGATCTCCACAAAGCTAT 59.493 45.455 0.00 0.00 0.00 2.97 R
2593 2736 3.949754 TGATGAAGGATTGATGAGGTTGC 59.050 43.478 0.00 0.00 0.00 4.17 R
2652 2796 4.038763 TCCAGAATAGCCACAGTATTACGG 59.961 45.833 0.00 0.00 0.00 4.02 R
3041 3191 1.068333 CCACAAGTCAAAATGGAGCGG 60.068 52.381 0.00 0.00 33.80 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 7.894376 CCATTCAAATAATAATGGTCATGCC 57.106 36.000 6.02 0.00 44.71 4.40
53 54 6.587226 CCATTCAAATAATAATGGTCATGCCG 59.413 38.462 6.02 0.00 44.71 5.69
54 55 6.707440 TTCAAATAATAATGGTCATGCCGT 57.293 33.333 0.00 0.00 41.21 5.68
56 57 6.502652 TCAAATAATAATGGTCATGCCGTTG 58.497 36.000 18.35 6.02 45.58 4.10
57 58 6.319911 TCAAATAATAATGGTCATGCCGTTGA 59.680 34.615 18.35 7.72 45.58 3.18
58 59 6.707440 AATAATAATGGTCATGCCGTTGAA 57.293 33.333 18.35 5.43 45.58 2.69
59 60 6.707440 ATAATAATGGTCATGCCGTTGAAA 57.293 33.333 18.35 7.99 45.58 2.69
60 61 5.398603 AATAATGGTCATGCCGTTGAAAA 57.601 34.783 18.35 4.61 45.58 2.29
61 62 3.959535 AATGGTCATGCCGTTGAAAAT 57.040 38.095 11.39 0.00 44.43 1.82
62 63 6.707440 ATAATGGTCATGCCGTTGAAAATA 57.293 33.333 18.35 3.79 45.58 1.40
63 64 5.596836 AATGGTCATGCCGTTGAAAATAT 57.403 34.783 11.39 0.00 44.43 1.28
64 65 5.596836 ATGGTCATGCCGTTGAAAATATT 57.403 34.783 0.00 0.00 41.21 1.28
65 66 4.742417 TGGTCATGCCGTTGAAAATATTG 58.258 39.130 0.00 0.00 41.21 1.90
66 67 4.219507 TGGTCATGCCGTTGAAAATATTGT 59.780 37.500 0.00 0.00 41.21 2.71
67 68 5.167845 GGTCATGCCGTTGAAAATATTGTT 58.832 37.500 0.00 0.00 0.00 2.83
68 69 5.288472 GGTCATGCCGTTGAAAATATTGTTC 59.712 40.000 0.00 0.00 0.00 3.18
69 70 5.861251 GTCATGCCGTTGAAAATATTGTTCA 59.139 36.000 8.21 8.21 33.21 3.18
70 71 6.531240 GTCATGCCGTTGAAAATATTGTTCAT 59.469 34.615 11.38 0.00 35.03 2.57
71 72 7.063308 GTCATGCCGTTGAAAATATTGTTCATT 59.937 33.333 11.38 0.00 35.03 2.57
72 73 8.246871 TCATGCCGTTGAAAATATTGTTCATTA 58.753 29.630 11.38 0.32 35.03 1.90
73 74 9.033481 CATGCCGTTGAAAATATTGTTCATTAT 57.967 29.630 11.38 3.79 35.03 1.28
112 113 9.632807 TGTTCATCGAAATTTAATTTTGTAGGG 57.367 29.630 14.99 6.13 35.57 3.53
113 114 9.849166 GTTCATCGAAATTTAATTTTGTAGGGA 57.151 29.630 14.99 7.81 35.57 4.20
169 170 7.401955 AAAAAGGTTCATGGCATTTGAAAAA 57.598 28.000 5.16 0.00 35.03 1.94
199 200 9.676195 TTCATGTGTTTCAAACTATGTTACATG 57.324 29.630 17.20 17.20 42.35 3.21
200 201 9.061435 TCATGTGTTTCAAACTATGTTACATGA 57.939 29.630 20.06 20.06 45.36 3.07
201 202 9.117145 CATGTGTTTCAAACTATGTTACATGAC 57.883 33.333 17.97 0.00 43.16 3.06
202 203 8.214721 TGTGTTTCAAACTATGTTACATGACA 57.785 30.769 8.26 0.00 0.00 3.58
203 204 8.845227 TGTGTTTCAAACTATGTTACATGACAT 58.155 29.630 8.26 2.07 42.57 3.06
204 205 9.677567 GTGTTTCAAACTATGTTACATGACATT 57.322 29.630 8.26 0.00 40.54 2.71
259 260 9.290988 ACCCGCACAAATATATATAAATGTTCA 57.709 29.630 9.78 0.00 0.00 3.18
391 392 7.693020 ACAGGAAAATGTAAAAACATGTTTGC 58.307 30.769 23.93 16.66 32.36 3.68
392 393 6.845280 CAGGAAAATGTAAAAACATGTTTGCG 59.155 34.615 23.93 0.00 32.36 4.85
393 394 6.536941 AGGAAAATGTAAAAACATGTTTGCGT 59.463 30.769 23.93 15.01 32.36 5.24
394 395 7.707035 AGGAAAATGTAAAAACATGTTTGCGTA 59.293 29.630 23.93 13.60 32.36 4.42
395 396 8.491950 GGAAAATGTAAAAACATGTTTGCGTAT 58.508 29.630 23.93 13.44 32.36 3.06
396 397 9.856803 GAAAATGTAAAAACATGTTTGCGTATT 57.143 25.926 23.93 17.71 32.36 1.89
429 430 4.090138 TGTTGACAACATGTTCACACAC 57.910 40.909 17.02 11.93 36.25 3.82
430 431 3.097910 GTTGACAACATGTTCACACACG 58.902 45.455 8.48 0.00 35.03 4.49
431 432 2.622436 TGACAACATGTTCACACACGA 58.378 42.857 8.48 0.00 35.03 4.35
432 433 3.003480 TGACAACATGTTCACACACGAA 58.997 40.909 8.48 0.00 35.03 3.85
433 434 3.063316 TGACAACATGTTCACACACGAAG 59.937 43.478 8.48 0.00 35.03 3.79
435 436 3.063452 ACAACATGTTCACACACGAAGTC 59.937 43.478 8.48 0.00 41.61 3.01
436 437 1.858458 ACATGTTCACACACGAAGTCG 59.142 47.619 0.00 0.00 41.61 4.18
453 454 3.587403 GTCGTGTGGACTGAAAAGTTC 57.413 47.619 0.00 0.00 42.62 3.01
454 455 2.933906 GTCGTGTGGACTGAAAAGTTCA 59.066 45.455 0.00 0.00 42.62 3.18
455 456 3.560068 GTCGTGTGGACTGAAAAGTTCAT 59.440 43.478 0.00 0.00 42.62 2.57
456 457 3.559655 TCGTGTGGACTGAAAAGTTCATG 59.440 43.478 0.00 0.00 39.30 3.07
457 458 3.559655 CGTGTGGACTGAAAAGTTCATGA 59.440 43.478 0.00 0.00 39.30 3.07
458 459 4.035091 CGTGTGGACTGAAAAGTTCATGAA 59.965 41.667 3.38 3.38 39.30 2.57
459 460 5.277974 CGTGTGGACTGAAAAGTTCATGAAT 60.278 40.000 12.12 0.00 39.30 2.57
460 461 6.507023 GTGTGGACTGAAAAGTTCATGAATT 58.493 36.000 12.12 4.21 39.30 2.17
461 462 6.980397 GTGTGGACTGAAAAGTTCATGAATTT 59.020 34.615 12.12 11.05 39.30 1.82
462 463 6.979817 TGTGGACTGAAAAGTTCATGAATTTG 59.020 34.615 15.98 7.00 39.30 2.32
463 464 7.147932 TGTGGACTGAAAAGTTCATGAATTTGA 60.148 33.333 15.98 5.42 39.30 2.69
464 465 7.706179 GTGGACTGAAAAGTTCATGAATTTGAA 59.294 33.333 15.98 5.32 39.30 2.69
465 466 8.256605 TGGACTGAAAAGTTCATGAATTTGAAA 58.743 29.630 15.98 5.01 39.30 2.69
466 467 9.097257 GGACTGAAAAGTTCATGAATTTGAAAA 57.903 29.630 15.98 3.49 39.30 2.29
504 505 2.910688 AAAAACGGCAGAGAGACAGA 57.089 45.000 0.00 0.00 0.00 3.41
505 506 2.910688 AAAACGGCAGAGAGACAGAA 57.089 45.000 0.00 0.00 0.00 3.02
506 507 2.910688 AAACGGCAGAGAGACAGAAA 57.089 45.000 0.00 0.00 0.00 2.52
507 508 2.910688 AACGGCAGAGAGACAGAAAA 57.089 45.000 0.00 0.00 0.00 2.29
508 509 2.910688 ACGGCAGAGAGACAGAAAAA 57.089 45.000 0.00 0.00 0.00 1.94
509 510 3.409026 ACGGCAGAGAGACAGAAAAAT 57.591 42.857 0.00 0.00 0.00 1.82
510 511 3.744660 ACGGCAGAGAGACAGAAAAATT 58.255 40.909 0.00 0.00 0.00 1.82
511 512 3.748568 ACGGCAGAGAGACAGAAAAATTC 59.251 43.478 0.00 0.00 0.00 2.17
512 513 3.126000 CGGCAGAGAGACAGAAAAATTCC 59.874 47.826 0.00 0.00 0.00 3.01
513 514 3.441922 GGCAGAGAGACAGAAAAATTCCC 59.558 47.826 0.00 0.00 0.00 3.97
514 515 3.126000 GCAGAGAGACAGAAAAATTCCCG 59.874 47.826 0.00 0.00 0.00 5.14
515 516 4.569943 CAGAGAGACAGAAAAATTCCCGA 58.430 43.478 0.00 0.00 0.00 5.14
516 517 4.390297 CAGAGAGACAGAAAAATTCCCGAC 59.610 45.833 0.00 0.00 0.00 4.79
517 518 3.676093 AGAGACAGAAAAATTCCCGACC 58.324 45.455 0.00 0.00 0.00 4.79
518 519 3.328050 AGAGACAGAAAAATTCCCGACCT 59.672 43.478 0.00 0.00 0.00 3.85
519 520 3.412386 AGACAGAAAAATTCCCGACCTG 58.588 45.455 0.00 0.00 0.00 4.00
520 521 2.488153 GACAGAAAAATTCCCGACCTGG 59.512 50.000 0.00 0.00 37.55 4.45
521 522 2.107552 ACAGAAAAATTCCCGACCTGGA 59.892 45.455 0.00 0.00 42.00 3.86
523 524 3.572255 CAGAAAAATTCCCGACCTGGAAA 59.428 43.478 0.00 0.00 46.99 3.13
524 525 3.572682 AGAAAAATTCCCGACCTGGAAAC 59.427 43.478 0.00 0.00 46.99 2.78
525 526 2.971901 AAATTCCCGACCTGGAAACT 57.028 45.000 0.00 0.00 46.99 2.66
526 527 2.971901 AATTCCCGACCTGGAAACTT 57.028 45.000 0.00 0.00 46.99 2.66
527 528 4.376225 AAATTCCCGACCTGGAAACTTA 57.624 40.909 0.00 0.00 46.99 2.24
528 529 4.586306 AATTCCCGACCTGGAAACTTAT 57.414 40.909 0.00 0.00 46.99 1.73
529 530 4.586306 ATTCCCGACCTGGAAACTTATT 57.414 40.909 0.00 0.00 46.99 1.40
530 531 3.343941 TCCCGACCTGGAAACTTATTG 57.656 47.619 0.00 0.00 42.00 1.90
531 532 2.907696 TCCCGACCTGGAAACTTATTGA 59.092 45.455 0.00 0.00 42.00 2.57
532 533 3.328343 TCCCGACCTGGAAACTTATTGAA 59.672 43.478 0.00 0.00 42.00 2.69
533 534 4.076394 CCCGACCTGGAAACTTATTGAAA 58.924 43.478 0.00 0.00 42.00 2.69
534 535 4.082949 CCCGACCTGGAAACTTATTGAAAC 60.083 45.833 0.00 0.00 42.00 2.78
535 536 4.082949 CCGACCTGGAAACTTATTGAAACC 60.083 45.833 0.00 0.00 42.00 3.27
536 537 4.378046 CGACCTGGAAACTTATTGAAACCG 60.378 45.833 0.00 0.00 0.00 4.44
537 538 3.254903 ACCTGGAAACTTATTGAAACCGC 59.745 43.478 0.00 0.00 0.00 5.68
538 539 3.366985 CCTGGAAACTTATTGAAACCGCC 60.367 47.826 0.00 0.00 0.00 6.13
539 540 2.559231 TGGAAACTTATTGAAACCGCCC 59.441 45.455 0.00 0.00 0.00 6.13
540 541 2.559231 GGAAACTTATTGAAACCGCCCA 59.441 45.455 0.00 0.00 0.00 5.36
541 542 3.006003 GGAAACTTATTGAAACCGCCCAA 59.994 43.478 0.00 0.00 0.00 4.12
542 543 4.322424 GGAAACTTATTGAAACCGCCCAAT 60.322 41.667 0.00 0.00 36.93 3.16
543 544 5.105675 GGAAACTTATTGAAACCGCCCAATA 60.106 40.000 0.00 0.00 35.02 1.90
544 545 4.976224 ACTTATTGAAACCGCCCAATAC 57.024 40.909 0.00 0.00 35.65 1.89
545 546 3.697542 ACTTATTGAAACCGCCCAATACC 59.302 43.478 0.00 0.00 35.65 2.73
546 547 1.099689 ATTGAAACCGCCCAATACCG 58.900 50.000 0.00 0.00 31.83 4.02
547 548 0.036448 TTGAAACCGCCCAATACCGA 59.964 50.000 0.00 0.00 0.00 4.69
548 549 0.391927 TGAAACCGCCCAATACCGAG 60.392 55.000 0.00 0.00 0.00 4.63
549 550 0.392060 GAAACCGCCCAATACCGAGT 60.392 55.000 0.00 0.00 0.00 4.18
550 551 0.903942 AAACCGCCCAATACCGAGTA 59.096 50.000 0.00 0.00 0.00 2.59
551 552 0.462789 AACCGCCCAATACCGAGTAG 59.537 55.000 0.00 0.00 0.00 2.57
552 553 0.396139 ACCGCCCAATACCGAGTAGA 60.396 55.000 0.00 0.00 0.00 2.59
553 554 0.748450 CCGCCCAATACCGAGTAGAA 59.252 55.000 0.00 0.00 0.00 2.10
554 555 1.269621 CCGCCCAATACCGAGTAGAAG 60.270 57.143 0.00 0.00 0.00 2.85
555 556 1.269621 CGCCCAATACCGAGTAGAAGG 60.270 57.143 0.00 0.00 0.00 3.46
556 557 1.761198 GCCCAATACCGAGTAGAAGGT 59.239 52.381 0.00 0.00 44.08 3.50
557 558 2.169978 GCCCAATACCGAGTAGAAGGTT 59.830 50.000 0.00 0.00 41.63 3.50
558 559 3.370209 GCCCAATACCGAGTAGAAGGTTT 60.370 47.826 0.00 0.00 41.63 3.27
559 560 4.439968 CCCAATACCGAGTAGAAGGTTTC 58.560 47.826 0.00 0.00 41.63 2.78
560 561 4.161754 CCCAATACCGAGTAGAAGGTTTCT 59.838 45.833 0.00 0.00 41.63 2.52
561 562 5.361857 CCCAATACCGAGTAGAAGGTTTCTA 59.638 44.000 0.00 0.00 41.63 2.10
562 563 6.127253 CCCAATACCGAGTAGAAGGTTTCTAA 60.127 42.308 0.42 0.00 43.40 2.10
563 564 7.325694 CCAATACCGAGTAGAAGGTTTCTAAA 58.674 38.462 0.42 0.00 43.40 1.85
564 565 7.820872 CCAATACCGAGTAGAAGGTTTCTAAAA 59.179 37.037 0.42 0.00 43.40 1.52
565 566 8.654215 CAATACCGAGTAGAAGGTTTCTAAAAC 58.346 37.037 0.42 0.00 43.40 2.43
566 567 5.545588 ACCGAGTAGAAGGTTTCTAAAACC 58.454 41.667 12.64 12.64 43.40 3.27
567 568 4.624452 CCGAGTAGAAGGTTTCTAAAACCG 59.376 45.833 14.21 2.46 43.40 4.44
568 569 4.624452 CGAGTAGAAGGTTTCTAAAACCGG 59.376 45.833 14.21 0.00 43.40 5.28
569 570 5.565439 CGAGTAGAAGGTTTCTAAAACCGGA 60.565 44.000 9.46 1.26 43.40 5.14
570 571 5.791666 AGTAGAAGGTTTCTAAAACCGGAG 58.208 41.667 9.46 0.00 43.40 4.63
571 572 3.409570 AGAAGGTTTCTAAAACCGGAGC 58.590 45.455 9.46 0.00 44.82 4.70
572 573 3.072622 AGAAGGTTTCTAAAACCGGAGCT 59.927 43.478 9.46 0.00 44.82 4.09
573 574 4.285260 AGAAGGTTTCTAAAACCGGAGCTA 59.715 41.667 9.46 0.00 44.82 3.32
574 575 4.628963 AGGTTTCTAAAACCGGAGCTAA 57.371 40.909 9.46 0.00 44.82 3.09
575 576 5.175388 AGGTTTCTAAAACCGGAGCTAAT 57.825 39.130 9.46 0.00 44.82 1.73
576 577 4.941873 AGGTTTCTAAAACCGGAGCTAATG 59.058 41.667 9.46 0.00 44.82 1.90
577 578 4.095932 GGTTTCTAAAACCGGAGCTAATGG 59.904 45.833 9.46 0.00 0.00 3.16
578 579 4.829872 TTCTAAAACCGGAGCTAATGGA 57.170 40.909 9.46 0.00 0.00 3.41
579 580 4.133013 TCTAAAACCGGAGCTAATGGAC 57.867 45.455 9.46 0.00 0.00 4.02
580 581 2.124277 AAAACCGGAGCTAATGGACC 57.876 50.000 9.46 0.00 0.00 4.46
581 582 0.988832 AAACCGGAGCTAATGGACCA 59.011 50.000 9.46 0.00 0.00 4.02
582 583 0.541863 AACCGGAGCTAATGGACCAG 59.458 55.000 9.46 0.00 0.00 4.00
583 584 0.617820 ACCGGAGCTAATGGACCAGT 60.618 55.000 9.46 0.00 0.00 4.00
584 585 0.105039 CCGGAGCTAATGGACCAGTC 59.895 60.000 0.00 0.00 0.00 3.51
585 586 1.115467 CGGAGCTAATGGACCAGTCT 58.885 55.000 0.00 0.00 0.00 3.24
586 587 2.307768 CGGAGCTAATGGACCAGTCTA 58.692 52.381 0.00 0.00 0.00 2.59
587 588 2.693591 CGGAGCTAATGGACCAGTCTAA 59.306 50.000 0.00 0.00 0.00 2.10
588 589 3.132289 CGGAGCTAATGGACCAGTCTAAA 59.868 47.826 0.00 0.00 0.00 1.85
589 590 4.202264 CGGAGCTAATGGACCAGTCTAAAT 60.202 45.833 0.00 0.00 0.00 1.40
590 591 5.010719 CGGAGCTAATGGACCAGTCTAAATA 59.989 44.000 0.00 0.00 0.00 1.40
591 592 6.462487 CGGAGCTAATGGACCAGTCTAAATAA 60.462 42.308 0.00 0.00 0.00 1.40
592 593 7.280356 GGAGCTAATGGACCAGTCTAAATAAA 58.720 38.462 0.00 0.00 0.00 1.40
593 594 7.773690 GGAGCTAATGGACCAGTCTAAATAAAA 59.226 37.037 0.00 0.00 0.00 1.52
594 595 8.507524 AGCTAATGGACCAGTCTAAATAAAAC 57.492 34.615 0.00 0.00 0.00 2.43
595 596 7.280205 AGCTAATGGACCAGTCTAAATAAAACG 59.720 37.037 0.00 0.00 0.00 3.60
596 597 5.813080 ATGGACCAGTCTAAATAAAACGC 57.187 39.130 0.00 0.00 0.00 4.84
597 598 4.004982 TGGACCAGTCTAAATAAAACGCC 58.995 43.478 0.00 0.00 0.00 5.68
598 599 4.259356 GGACCAGTCTAAATAAAACGCCT 58.741 43.478 0.00 0.00 0.00 5.52
599 600 4.331992 GGACCAGTCTAAATAAAACGCCTC 59.668 45.833 0.00 0.00 0.00 4.70
600 601 5.161943 ACCAGTCTAAATAAAACGCCTCT 57.838 39.130 0.00 0.00 0.00 3.69
601 602 4.935808 ACCAGTCTAAATAAAACGCCTCTG 59.064 41.667 0.00 0.00 0.00 3.35
602 603 5.175859 CCAGTCTAAATAAAACGCCTCTGA 58.824 41.667 0.00 0.00 0.00 3.27
603 604 5.642063 CCAGTCTAAATAAAACGCCTCTGAA 59.358 40.000 0.00 0.00 0.00 3.02
604 605 6.183360 CCAGTCTAAATAAAACGCCTCTGAAG 60.183 42.308 0.00 0.00 0.00 3.02
605 606 6.369065 CAGTCTAAATAAAACGCCTCTGAAGT 59.631 38.462 0.00 0.00 0.00 3.01
606 607 6.369065 AGTCTAAATAAAACGCCTCTGAAGTG 59.631 38.462 0.00 0.00 0.00 3.16
607 608 4.766404 AAATAAAACGCCTCTGAAGTGG 57.234 40.909 0.00 0.00 0.00 4.00
608 609 3.695830 ATAAAACGCCTCTGAAGTGGA 57.304 42.857 2.60 0.00 0.00 4.02
609 610 1.884235 AAAACGCCTCTGAAGTGGAG 58.116 50.000 2.60 1.88 35.17 3.86
610 611 1.048601 AAACGCCTCTGAAGTGGAGA 58.951 50.000 8.83 0.00 33.63 3.71
611 612 0.605589 AACGCCTCTGAAGTGGAGAG 59.394 55.000 8.83 0.00 37.33 3.20
612 613 1.153667 CGCCTCTGAAGTGGAGAGC 60.154 63.158 2.60 0.00 36.40 4.09
613 614 1.603236 CGCCTCTGAAGTGGAGAGCT 61.603 60.000 2.60 0.00 36.40 4.09
614 615 0.175531 GCCTCTGAAGTGGAGAGCTC 59.824 60.000 5.27 5.27 36.40 4.09
625 626 2.394930 GGAGAGCTCCTTCCAACTTC 57.605 55.000 15.42 1.70 46.16 3.01
626 627 1.905894 GGAGAGCTCCTTCCAACTTCT 59.094 52.381 15.42 0.00 46.16 2.85
627 628 3.100671 GGAGAGCTCCTTCCAACTTCTA 58.899 50.000 15.42 0.00 46.16 2.10
628 629 3.709141 GGAGAGCTCCTTCCAACTTCTAT 59.291 47.826 15.42 0.00 46.16 1.98
629 630 4.202212 GGAGAGCTCCTTCCAACTTCTATC 60.202 50.000 15.42 0.00 46.16 2.08
630 631 4.619679 AGAGCTCCTTCCAACTTCTATCT 58.380 43.478 10.93 0.00 0.00 1.98
631 632 5.029474 AGAGCTCCTTCCAACTTCTATCTT 58.971 41.667 10.93 0.00 0.00 2.40
632 633 5.096443 AGCTCCTTCCAACTTCTATCTTG 57.904 43.478 0.00 0.00 0.00 3.02
633 634 3.625313 GCTCCTTCCAACTTCTATCTTGC 59.375 47.826 0.00 0.00 0.00 4.01
634 635 4.625083 GCTCCTTCCAACTTCTATCTTGCT 60.625 45.833 0.00 0.00 0.00 3.91
635 636 4.836825 TCCTTCCAACTTCTATCTTGCTG 58.163 43.478 0.00 0.00 0.00 4.41
636 637 3.376546 CCTTCCAACTTCTATCTTGCTGC 59.623 47.826 0.00 0.00 0.00 5.25
637 638 2.991250 TCCAACTTCTATCTTGCTGCC 58.009 47.619 0.00 0.00 0.00 4.85
638 639 1.667724 CCAACTTCTATCTTGCTGCCG 59.332 52.381 0.00 0.00 0.00 5.69
639 640 2.350522 CAACTTCTATCTTGCTGCCGT 58.649 47.619 0.00 0.00 0.00 5.68
640 641 3.521560 CAACTTCTATCTTGCTGCCGTA 58.478 45.455 0.00 0.00 0.00 4.02
641 642 3.887621 ACTTCTATCTTGCTGCCGTAA 57.112 42.857 0.00 0.00 0.00 3.18
642 643 3.786635 ACTTCTATCTTGCTGCCGTAAG 58.213 45.455 0.00 0.00 34.59 2.34
643 644 2.225068 TCTATCTTGCTGCCGTAAGC 57.775 50.000 1.06 0.00 43.82 3.09
654 655 2.923605 GCCGTAAGCGAGATATAGCT 57.076 50.000 0.00 0.00 46.97 3.32
655 656 2.788030 GCCGTAAGCGAGATATAGCTC 58.212 52.381 7.98 7.98 43.78 4.09
656 657 2.420722 GCCGTAAGCGAGATATAGCTCT 59.579 50.000 15.61 0.27 43.78 4.09
657 658 3.486209 GCCGTAAGCGAGATATAGCTCTC 60.486 52.174 15.61 8.12 43.78 3.20
666 667 5.873179 GAGATATAGCTCTCGCAGTAAGT 57.127 43.478 10.79 0.00 39.10 2.24
667 668 6.249035 GAGATATAGCTCTCGCAGTAAGTT 57.751 41.667 10.79 0.00 39.10 2.66
668 669 7.367159 GAGATATAGCTCTCGCAGTAAGTTA 57.633 40.000 10.79 0.00 39.10 2.24
669 670 7.747155 AGATATAGCTCTCGCAGTAAGTTAA 57.253 36.000 0.00 0.00 39.10 2.01
670 671 7.586747 AGATATAGCTCTCGCAGTAAGTTAAC 58.413 38.462 0.00 0.00 39.10 2.01
671 672 3.936372 AGCTCTCGCAGTAAGTTAACA 57.064 42.857 8.61 0.00 39.10 2.41
672 673 4.457834 AGCTCTCGCAGTAAGTTAACAT 57.542 40.909 8.61 0.00 39.10 2.71
673 674 4.177026 AGCTCTCGCAGTAAGTTAACATG 58.823 43.478 8.61 2.37 39.10 3.21
674 675 3.927142 GCTCTCGCAGTAAGTTAACATGT 59.073 43.478 8.61 0.00 35.78 3.21
675 676 4.389077 GCTCTCGCAGTAAGTTAACATGTT 59.611 41.667 16.68 16.68 35.78 2.71
676 677 5.107065 GCTCTCGCAGTAAGTTAACATGTTT 60.107 40.000 17.78 0.51 35.78 2.83
677 678 6.565999 GCTCTCGCAGTAAGTTAACATGTTTT 60.566 38.462 17.78 7.81 35.78 2.43
678 679 6.884187 TCTCGCAGTAAGTTAACATGTTTTC 58.116 36.000 17.78 10.18 0.00 2.29
679 680 6.704493 TCTCGCAGTAAGTTAACATGTTTTCT 59.296 34.615 17.78 12.29 0.00 2.52
680 681 7.225931 TCTCGCAGTAAGTTAACATGTTTTCTT 59.774 33.333 17.78 20.72 0.00 2.52
681 682 7.699566 TCGCAGTAAGTTAACATGTTTTCTTT 58.300 30.769 17.78 9.07 0.00 2.52
682 683 7.853929 TCGCAGTAAGTTAACATGTTTTCTTTC 59.146 33.333 17.78 16.89 0.00 2.62
683 684 7.855904 CGCAGTAAGTTAACATGTTTTCTTTCT 59.144 33.333 17.78 18.52 0.00 2.52
684 685 9.170584 GCAGTAAGTTAACATGTTTTCTTTCTC 57.829 33.333 17.78 13.46 0.00 2.87
693 694 7.133891 ACATGTTTTCTTTCTCAATAGGACG 57.866 36.000 0.00 0.00 0.00 4.79
694 695 6.149474 ACATGTTTTCTTTCTCAATAGGACGG 59.851 38.462 0.00 0.00 0.00 4.79
695 696 5.860611 TGTTTTCTTTCTCAATAGGACGGA 58.139 37.500 0.00 0.00 0.00 4.69
696 697 5.699458 TGTTTTCTTTCTCAATAGGACGGAC 59.301 40.000 0.00 0.00 0.00 4.79
697 698 5.740290 TTTCTTTCTCAATAGGACGGACT 57.260 39.130 0.00 0.00 0.00 3.85
698 699 6.845758 TTTCTTTCTCAATAGGACGGACTA 57.154 37.500 0.00 0.00 0.00 2.59
699 700 7.419711 TTTCTTTCTCAATAGGACGGACTAT 57.580 36.000 0.00 0.00 35.24 2.12
700 701 6.636562 TCTTTCTCAATAGGACGGACTATC 57.363 41.667 2.22 0.00 32.66 2.08
701 702 5.238868 TCTTTCTCAATAGGACGGACTATCG 59.761 44.000 2.22 0.00 32.66 2.92
717 718 4.000325 ACTATCGCAATTAACACACTGCA 59.000 39.130 0.00 0.00 34.39 4.41
718 719 2.679355 TCGCAATTAACACACTGCAC 57.321 45.000 0.00 0.00 34.39 4.57
723 724 1.247567 ATTAACACACTGCACAGCCC 58.752 50.000 0.00 0.00 0.00 5.19
773 774 1.374947 CGAAACTCCTGGGCTGGAA 59.625 57.895 0.00 0.00 35.43 3.53
778 779 1.153086 CTCCTGGGCTGGAATTCCG 60.153 63.158 19.57 14.67 39.43 4.30
788 789 0.550914 TGGAATTCCGCTAGCCCAAT 59.449 50.000 19.57 4.52 39.43 3.16
794 796 2.430367 CGCTAGCCCAATACCCCC 59.570 66.667 9.66 0.00 0.00 5.40
818 820 1.358759 CCGCACTCGCCAACTTTTT 59.641 52.632 0.00 0.00 33.11 1.94
820 822 0.660300 CGCACTCGCCAACTTTTTCC 60.660 55.000 0.00 0.00 33.11 3.13
841 850 0.951558 TTGTTCTCTTGCGCTTTCCC 59.048 50.000 9.73 0.00 0.00 3.97
1183 1198 1.550130 TTCGCCCCTTGACCTACCTG 61.550 60.000 0.00 0.00 0.00 4.00
1213 1228 2.629051 CTTGTTATCCCCCACTTCGTC 58.371 52.381 0.00 0.00 0.00 4.20
1234 1249 2.939261 CGCCTACCCTGTGTCGGTT 61.939 63.158 0.00 0.00 34.66 4.44
1286 1301 2.125512 ATCTGTGAAGGCGGCGAC 60.126 61.111 12.98 8.50 0.00 5.19
1378 1393 0.819259 GCAGGTTTGGTGTGAGCTCA 60.819 55.000 13.74 13.74 0.00 4.26
1407 1443 9.346005 CCTTGTCTAAACCTAAAACTAGGAAAA 57.654 33.333 5.20 0.00 39.60 2.29
1478 1514 6.582677 TCTTCTAAGACTGAAGAGGTGAAG 57.417 41.667 1.98 0.00 43.19 3.02
1529 1565 2.303175 GTTGGTTCCCTTTGCACACTA 58.697 47.619 0.00 0.00 0.00 2.74
1530 1566 2.890945 GTTGGTTCCCTTTGCACACTAT 59.109 45.455 0.00 0.00 0.00 2.12
1531 1567 3.237268 TGGTTCCCTTTGCACACTATT 57.763 42.857 0.00 0.00 0.00 1.73
1532 1568 4.374689 TGGTTCCCTTTGCACACTATTA 57.625 40.909 0.00 0.00 0.00 0.98
1543 1579 7.750458 CCTTTGCACACTATTATTACACAGTTG 59.250 37.037 0.00 0.00 0.00 3.16
1545 1581 7.971183 TGCACACTATTATTACACAGTTGAA 57.029 32.000 0.00 0.00 0.00 2.69
1586 1642 9.519191 TCTGAAATTGAGGATTTGTTATTCTGA 57.481 29.630 0.00 0.00 38.06 3.27
1635 1692 5.750067 GTCTGTCTTGCAATGTTTTGATTGT 59.250 36.000 0.00 0.00 35.98 2.71
1638 1695 5.749588 TGTCTTGCAATGTTTTGATTGTCAG 59.250 36.000 0.00 0.00 35.98 3.51
1643 1700 5.163530 TGCAATGTTTTGATTGTCAGTGTCT 60.164 36.000 0.00 0.00 35.98 3.41
1649 1706 8.275015 TGTTTTGATTGTCAGTGTCTCTTTTA 57.725 30.769 0.00 0.00 0.00 1.52
1834 1913 3.196685 GGAAGAGGCTGTTCTGTAGATGT 59.803 47.826 21.90 0.00 0.00 3.06
2018 2097 4.566004 CTTCGGTTGTCAAGGTAATCAGA 58.434 43.478 0.00 0.00 0.00 3.27
2116 2257 3.160269 CCCAACTGAGAAGGAGCAAATT 58.840 45.455 0.00 0.00 0.00 1.82
2195 2336 6.939163 GCCTGATGTAATTTATCCATCTCTGT 59.061 38.462 0.00 0.00 36.72 3.41
2234 2376 4.202080 ACATGACATGTATGCTTTCATGGC 60.202 41.667 19.53 17.36 45.20 4.40
2303 2445 4.330074 CGCGGAAGACTGATGTTATCTTTT 59.670 41.667 0.00 0.00 32.83 2.27
2347 2489 5.745227 TCCAAATCAGTAATCTCCTTCCAC 58.255 41.667 0.00 0.00 0.00 4.02
2436 2579 8.860517 ATATATATAGGAATGGAGAGCAACCA 57.139 34.615 0.00 0.00 41.83 3.67
2492 2635 9.672673 GTGCTTACATGGATAATAGATAATGGT 57.327 33.333 0.00 0.00 0.00 3.55
2593 2736 8.617290 ATGGTTTACCTTCTGTACTTTACAAG 57.383 34.615 0.00 0.00 36.08 3.16
2639 2783 8.415553 TCAATTGCTGATATAGGTTCCATTTTG 58.584 33.333 0.00 0.00 0.00 2.44
2724 2869 6.412362 AGACTAATAGGTAGCACAATCTGG 57.588 41.667 0.00 0.00 32.45 3.86
2853 3002 2.884639 TGGTTACTCCTTGCTTTTCTGC 59.115 45.455 0.00 0.00 37.07 4.26
2920 3069 2.205022 AGGTTGCTGCTGCTTGATTA 57.795 45.000 17.00 0.00 40.48 1.75
3041 3191 2.370849 TCCTTACTCCCAAGACACAACC 59.629 50.000 0.00 0.00 0.00 3.77
3146 3296 2.025155 GATAGTCGAGTTCCTCCTGCA 58.975 52.381 0.00 0.00 0.00 4.41
3171 3321 4.321974 GGCGAGTATGACATCCATATGTGA 60.322 45.833 1.24 0.00 46.49 3.58
3209 3360 6.707440 TGTGCTTTTGAATCCTAGTTTCAA 57.293 33.333 11.90 11.90 40.37 2.69
3231 3382 8.106247 TCAAAACAATTCAGTACCAACTATCC 57.894 34.615 0.00 0.00 33.48 2.59
3276 3427 3.880490 AGATTAGTAGTGCTCCAGTCTCG 59.120 47.826 0.00 0.00 0.00 4.04
3368 3527 2.479566 AGATCTTTGTCGGTGTGCAT 57.520 45.000 0.00 0.00 0.00 3.96
3398 3557 9.775854 TGGTATTTTGTCATCATTTTGTTTCAT 57.224 25.926 0.00 0.00 0.00 2.57
3423 3582 2.766263 CCTGTGTGAACTAGATAGCCCA 59.234 50.000 0.00 0.00 0.00 5.36
3424 3583 3.389329 CCTGTGTGAACTAGATAGCCCAT 59.611 47.826 0.00 0.00 0.00 4.00
3425 3584 4.141620 CCTGTGTGAACTAGATAGCCCATT 60.142 45.833 0.00 0.00 0.00 3.16
3502 3661 6.593382 TGTGGCCATGTAATCATTTTAAAAGC 59.407 34.615 9.72 0.44 31.15 3.51
3588 3747 9.467258 CAGCTGATTTGTTCTTTAATTCAGAAA 57.533 29.630 8.42 0.00 37.56 2.52
3625 3788 3.040655 TGCTTATACTAGGGCCTCACA 57.959 47.619 10.74 0.00 0.00 3.58
3689 3884 7.712639 GCACTTTTCATCAGGATTGTCTATCTA 59.287 37.037 0.00 0.00 33.53 1.98
3747 3942 7.928706 CCTCCGTTCACAAATATAAGATCTTCT 59.071 37.037 12.24 4.75 0.00 2.85
3774 3969 9.912634 AACTTTTTGTGAATTGGATGTATGTAG 57.087 29.630 0.00 0.00 0.00 2.74
3775 3970 9.295825 ACTTTTTGTGAATTGGATGTATGTAGA 57.704 29.630 0.00 0.00 0.00 2.59
3776 3971 9.559958 CTTTTTGTGAATTGGATGTATGTAGAC 57.440 33.333 0.00 0.00 0.00 2.59
3777 3972 8.628630 TTTTGTGAATTGGATGTATGTAGACA 57.371 30.769 0.00 0.00 0.00 3.41
3778 3973 8.806429 TTTGTGAATTGGATGTATGTAGACAT 57.194 30.769 0.08 0.08 42.82 3.06
3867 4062 2.825861 TTTGTGAACGGAGGGAGTAC 57.174 50.000 0.00 0.00 0.00 2.73
3889 4084 9.280456 AGTACCTTATAATATAGGTTGATGGGG 57.720 37.037 0.23 0.00 42.01 4.96
3890 4085 7.525158 ACCTTATAATATAGGTTGATGGGGG 57.475 40.000 0.00 0.00 42.01 5.40
3907 4102 1.084370 GGGTGAATTCACTCGCCTCG 61.084 60.000 31.81 0.00 45.73 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.147312 ACGGCATGACCATTATTATTTGAATG 58.853 34.615 0.00 0.00 39.03 2.67
30 31 7.288810 ACGGCATGACCATTATTATTTGAAT 57.711 32.000 0.00 0.00 39.03 2.57
31 32 6.707440 ACGGCATGACCATTATTATTTGAA 57.293 33.333 0.00 0.00 39.03 2.69
32 33 6.319911 TCAACGGCATGACCATTATTATTTGA 59.680 34.615 0.00 0.00 39.03 2.69
33 34 6.502652 TCAACGGCATGACCATTATTATTTG 58.497 36.000 0.00 0.00 39.03 2.32
34 35 6.707440 TCAACGGCATGACCATTATTATTT 57.293 33.333 0.00 0.00 39.03 1.40
35 36 6.707440 TTCAACGGCATGACCATTATTATT 57.293 33.333 0.00 0.00 39.03 1.40
36 37 6.707440 TTTCAACGGCATGACCATTATTAT 57.293 33.333 0.00 0.00 39.03 1.28
37 38 6.516739 TTTTCAACGGCATGACCATTATTA 57.483 33.333 0.00 0.00 39.03 0.98
38 39 5.398603 TTTTCAACGGCATGACCATTATT 57.601 34.783 0.00 0.00 39.03 1.40
39 40 5.596836 ATTTTCAACGGCATGACCATTAT 57.403 34.783 0.00 0.00 39.03 1.28
40 41 6.707440 ATATTTTCAACGGCATGACCATTA 57.293 33.333 0.00 0.00 39.03 1.90
41 42 3.959535 ATTTTCAACGGCATGACCATT 57.040 38.095 0.00 0.00 39.03 3.16
42 43 5.105392 ACAATATTTTCAACGGCATGACCAT 60.105 36.000 0.00 0.00 39.03 3.55
43 44 4.219507 ACAATATTTTCAACGGCATGACCA 59.780 37.500 0.00 0.00 39.03 4.02
44 45 4.743493 ACAATATTTTCAACGGCATGACC 58.257 39.130 0.00 0.00 0.00 4.02
45 46 5.861251 TGAACAATATTTTCAACGGCATGAC 59.139 36.000 0.00 0.00 29.89 3.06
46 47 6.018589 TGAACAATATTTTCAACGGCATGA 57.981 33.333 0.00 0.00 29.89 3.07
47 48 6.890663 ATGAACAATATTTTCAACGGCATG 57.109 33.333 13.43 0.00 36.57 4.06
86 87 9.632807 CCCTACAAAATTAAATTTCGATGAACA 57.367 29.630 0.00 0.00 0.00 3.18
87 88 9.849166 TCCCTACAAAATTAAATTTCGATGAAC 57.151 29.630 0.00 0.00 0.00 3.18
145 146 7.401955 TTTTTCAAATGCCATGAACCTTTTT 57.598 28.000 0.00 0.00 36.57 1.94
173 174 9.676195 CATGTAACATAGTTTGAAACACATGAA 57.324 29.630 22.12 11.66 41.92 2.57
174 175 9.061435 TCATGTAACATAGTTTGAAACACATGA 57.939 29.630 23.82 23.82 44.32 3.07
175 176 9.117145 GTCATGTAACATAGTTTGAAACACATG 57.883 33.333 21.26 21.26 41.15 3.21
176 177 8.845227 TGTCATGTAACATAGTTTGAAACACAT 58.155 29.630 11.02 7.16 0.00 3.21
177 178 8.214721 TGTCATGTAACATAGTTTGAAACACA 57.785 30.769 11.02 5.07 0.00 3.72
178 179 9.677567 AATGTCATGTAACATAGTTTGAAACAC 57.322 29.630 11.02 0.00 38.92 3.32
233 234 9.290988 TGAACATTTATATATATTTGTGCGGGT 57.709 29.630 0.00 0.00 0.00 5.28
365 366 8.821894 GCAAACATGTTTTTACATTTTCCTGTA 58.178 29.630 21.10 0.00 0.00 2.74
366 367 7.465245 CGCAAACATGTTTTTACATTTTCCTGT 60.465 33.333 21.10 0.00 0.00 4.00
367 368 6.845280 CGCAAACATGTTTTTACATTTTCCTG 59.155 34.615 21.10 7.33 0.00 3.86
368 369 6.536941 ACGCAAACATGTTTTTACATTTTCCT 59.463 30.769 21.10 0.00 0.00 3.36
369 370 6.710611 ACGCAAACATGTTTTTACATTTTCC 58.289 32.000 21.10 0.15 0.00 3.13
370 371 9.856803 AATACGCAAACATGTTTTTACATTTTC 57.143 25.926 21.10 2.21 0.00 2.29
408 409 3.425492 CGTGTGTGAACATGTTGTCAACA 60.425 43.478 20.28 20.28 46.94 3.33
409 410 3.097910 CGTGTGTGAACATGTTGTCAAC 58.902 45.455 17.58 8.86 0.00 3.18
410 411 3.003480 TCGTGTGTGAACATGTTGTCAA 58.997 40.909 17.58 3.73 0.00 3.18
411 412 2.622436 TCGTGTGTGAACATGTTGTCA 58.378 42.857 17.58 11.66 0.00 3.58
412 413 3.063452 ACTTCGTGTGTGAACATGTTGTC 59.937 43.478 17.58 9.09 0.00 3.18
413 414 3.006940 ACTTCGTGTGTGAACATGTTGT 58.993 40.909 17.58 0.09 0.00 3.32
414 415 3.607439 GACTTCGTGTGTGAACATGTTG 58.393 45.455 17.58 0.00 0.00 3.33
415 416 2.284150 CGACTTCGTGTGTGAACATGTT 59.716 45.455 11.78 11.78 34.11 2.71
416 417 1.858458 CGACTTCGTGTGTGAACATGT 59.142 47.619 0.00 0.00 34.11 3.21
417 418 2.560284 CGACTTCGTGTGTGAACATG 57.440 50.000 0.00 0.00 34.11 3.21
433 434 2.933906 TGAACTTTTCAGTCCACACGAC 59.066 45.455 0.00 0.00 42.32 4.34
434 435 3.254470 TGAACTTTTCAGTCCACACGA 57.746 42.857 0.00 0.00 34.08 4.35
435 436 3.559655 TCATGAACTTTTCAGTCCACACG 59.440 43.478 0.00 0.00 43.98 4.49
436 437 5.499139 TTCATGAACTTTTCAGTCCACAC 57.501 39.130 3.38 0.00 43.98 3.82
437 438 6.713762 AATTCATGAACTTTTCAGTCCACA 57.286 33.333 11.07 0.00 43.98 4.17
438 439 7.202526 TCAAATTCATGAACTTTTCAGTCCAC 58.797 34.615 11.07 0.00 43.98 4.02
439 440 7.345422 TCAAATTCATGAACTTTTCAGTCCA 57.655 32.000 11.07 0.00 43.98 4.02
440 441 8.647143 TTTCAAATTCATGAACTTTTCAGTCC 57.353 30.769 11.07 0.00 43.98 3.85
485 486 2.910688 TCTGTCTCTCTGCCGTTTTT 57.089 45.000 0.00 0.00 0.00 1.94
486 487 2.910688 TTCTGTCTCTCTGCCGTTTT 57.089 45.000 0.00 0.00 0.00 2.43
487 488 2.910688 TTTCTGTCTCTCTGCCGTTT 57.089 45.000 0.00 0.00 0.00 3.60
488 489 2.910688 TTTTCTGTCTCTCTGCCGTT 57.089 45.000 0.00 0.00 0.00 4.44
489 490 2.910688 TTTTTCTGTCTCTCTGCCGT 57.089 45.000 0.00 0.00 0.00 5.68
490 491 3.126000 GGAATTTTTCTGTCTCTCTGCCG 59.874 47.826 0.00 0.00 0.00 5.69
491 492 3.441922 GGGAATTTTTCTGTCTCTCTGCC 59.558 47.826 0.00 0.00 0.00 4.85
492 493 3.126000 CGGGAATTTTTCTGTCTCTCTGC 59.874 47.826 0.00 0.00 0.00 4.26
493 494 4.390297 GTCGGGAATTTTTCTGTCTCTCTG 59.610 45.833 0.00 0.00 0.00 3.35
494 495 4.563786 GGTCGGGAATTTTTCTGTCTCTCT 60.564 45.833 0.00 0.00 0.00 3.10
495 496 3.685272 GGTCGGGAATTTTTCTGTCTCTC 59.315 47.826 0.00 0.00 0.00 3.20
496 497 3.328050 AGGTCGGGAATTTTTCTGTCTCT 59.672 43.478 0.00 0.00 0.00 3.10
497 498 3.437049 CAGGTCGGGAATTTTTCTGTCTC 59.563 47.826 0.00 0.00 0.00 3.36
498 499 3.412386 CAGGTCGGGAATTTTTCTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
499 500 2.488153 CCAGGTCGGGAATTTTTCTGTC 59.512 50.000 0.00 0.00 0.00 3.51
500 501 2.107552 TCCAGGTCGGGAATTTTTCTGT 59.892 45.455 0.00 0.00 32.90 3.41
501 502 2.790433 TCCAGGTCGGGAATTTTTCTG 58.210 47.619 0.00 0.00 32.90 3.02
502 503 3.518992 TTCCAGGTCGGGAATTTTTCT 57.481 42.857 0.00 0.00 41.92 2.52
503 504 3.572682 AGTTTCCAGGTCGGGAATTTTTC 59.427 43.478 3.59 0.00 45.90 2.29
504 505 3.572642 AGTTTCCAGGTCGGGAATTTTT 58.427 40.909 3.59 0.00 45.90 1.94
505 506 3.238788 AGTTTCCAGGTCGGGAATTTT 57.761 42.857 3.59 0.00 45.90 1.82
506 507 2.971901 AGTTTCCAGGTCGGGAATTT 57.028 45.000 3.59 0.00 45.90 1.82
507 508 2.971901 AAGTTTCCAGGTCGGGAATT 57.028 45.000 3.59 0.00 45.90 2.17
508 509 4.018779 TCAATAAGTTTCCAGGTCGGGAAT 60.019 41.667 3.59 0.00 45.90 3.01
509 510 3.328343 TCAATAAGTTTCCAGGTCGGGAA 59.672 43.478 0.00 0.00 45.00 3.97
510 511 2.907696 TCAATAAGTTTCCAGGTCGGGA 59.092 45.455 0.00 0.00 34.36 5.14
511 512 3.343941 TCAATAAGTTTCCAGGTCGGG 57.656 47.619 0.00 0.00 34.36 5.14
512 513 4.082949 GGTTTCAATAAGTTTCCAGGTCGG 60.083 45.833 0.00 0.00 0.00 4.79
513 514 4.378046 CGGTTTCAATAAGTTTCCAGGTCG 60.378 45.833 0.00 0.00 0.00 4.79
514 515 4.615223 GCGGTTTCAATAAGTTTCCAGGTC 60.615 45.833 0.00 0.00 0.00 3.85
515 516 3.254903 GCGGTTTCAATAAGTTTCCAGGT 59.745 43.478 0.00 0.00 0.00 4.00
516 517 3.366985 GGCGGTTTCAATAAGTTTCCAGG 60.367 47.826 0.00 0.00 0.00 4.45
517 518 3.366985 GGGCGGTTTCAATAAGTTTCCAG 60.367 47.826 0.00 0.00 0.00 3.86
518 519 2.559231 GGGCGGTTTCAATAAGTTTCCA 59.441 45.455 0.00 0.00 0.00 3.53
519 520 2.559231 TGGGCGGTTTCAATAAGTTTCC 59.441 45.455 0.00 0.00 0.00 3.13
520 521 3.926821 TGGGCGGTTTCAATAAGTTTC 57.073 42.857 0.00 0.00 0.00 2.78
521 522 4.882842 ATTGGGCGGTTTCAATAAGTTT 57.117 36.364 0.00 0.00 32.49 2.66
522 523 4.158949 GGTATTGGGCGGTTTCAATAAGTT 59.841 41.667 0.00 0.00 37.52 2.66
523 524 3.697542 GGTATTGGGCGGTTTCAATAAGT 59.302 43.478 0.00 0.00 37.52 2.24
524 525 3.242936 CGGTATTGGGCGGTTTCAATAAG 60.243 47.826 0.00 0.00 37.52 1.73
525 526 2.683867 CGGTATTGGGCGGTTTCAATAA 59.316 45.455 0.00 0.00 37.52 1.40
526 527 2.093075 TCGGTATTGGGCGGTTTCAATA 60.093 45.455 0.00 0.00 35.50 1.90
527 528 1.099689 CGGTATTGGGCGGTTTCAAT 58.900 50.000 0.00 0.00 37.38 2.57
528 529 0.036448 TCGGTATTGGGCGGTTTCAA 59.964 50.000 0.00 0.00 0.00 2.69
529 530 0.391927 CTCGGTATTGGGCGGTTTCA 60.392 55.000 0.00 0.00 0.00 2.69
530 531 0.392060 ACTCGGTATTGGGCGGTTTC 60.392 55.000 0.00 0.00 0.00 2.78
531 532 0.903942 TACTCGGTATTGGGCGGTTT 59.096 50.000 0.00 0.00 0.00 3.27
532 533 0.462789 CTACTCGGTATTGGGCGGTT 59.537 55.000 0.00 0.00 0.00 4.44
533 534 0.396139 TCTACTCGGTATTGGGCGGT 60.396 55.000 0.00 0.00 0.00 5.68
534 535 0.748450 TTCTACTCGGTATTGGGCGG 59.252 55.000 0.00 0.00 0.00 6.13
535 536 1.269621 CCTTCTACTCGGTATTGGGCG 60.270 57.143 0.00 0.00 0.00 6.13
536 537 1.761198 ACCTTCTACTCGGTATTGGGC 59.239 52.381 0.00 0.00 0.00 5.36
537 538 4.161754 AGAAACCTTCTACTCGGTATTGGG 59.838 45.833 0.00 0.00 38.49 4.12
538 539 5.340439 AGAAACCTTCTACTCGGTATTGG 57.660 43.478 0.00 0.00 38.49 3.16
539 540 8.654215 GTTTTAGAAACCTTCTACTCGGTATTG 58.346 37.037 0.00 0.00 41.70 1.90
540 541 7.821359 GGTTTTAGAAACCTTCTACTCGGTATT 59.179 37.037 13.83 0.00 41.70 1.89
541 542 7.326454 GGTTTTAGAAACCTTCTACTCGGTAT 58.674 38.462 13.83 0.00 41.70 2.73
542 543 6.570378 CGGTTTTAGAAACCTTCTACTCGGTA 60.570 42.308 17.62 0.00 41.70 4.02
543 544 5.545588 GGTTTTAGAAACCTTCTACTCGGT 58.454 41.667 13.83 0.00 41.70 4.69
544 545 4.624452 CGGTTTTAGAAACCTTCTACTCGG 59.376 45.833 17.62 0.00 41.70 4.63
545 546 4.624452 CCGGTTTTAGAAACCTTCTACTCG 59.376 45.833 17.62 4.88 41.70 4.18
546 547 5.787380 TCCGGTTTTAGAAACCTTCTACTC 58.213 41.667 17.62 0.00 41.70 2.59
547 548 5.791666 CTCCGGTTTTAGAAACCTTCTACT 58.208 41.667 17.62 0.00 41.70 2.57
548 549 4.391216 GCTCCGGTTTTAGAAACCTTCTAC 59.609 45.833 17.62 3.46 41.70 2.59
549 550 4.285260 AGCTCCGGTTTTAGAAACCTTCTA 59.715 41.667 17.62 0.00 41.14 2.10
550 551 3.072622 AGCTCCGGTTTTAGAAACCTTCT 59.927 43.478 17.62 8.27 43.72 2.85
551 552 3.409570 AGCTCCGGTTTTAGAAACCTTC 58.590 45.455 17.62 6.59 38.15 3.46
552 553 3.503800 AGCTCCGGTTTTAGAAACCTT 57.496 42.857 17.62 0.00 38.15 3.50
553 554 4.628963 TTAGCTCCGGTTTTAGAAACCT 57.371 40.909 17.62 4.37 38.15 3.50
554 555 4.095932 CCATTAGCTCCGGTTTTAGAAACC 59.904 45.833 11.61 11.61 36.96 3.27
555 556 4.939439 TCCATTAGCTCCGGTTTTAGAAAC 59.061 41.667 0.00 0.00 0.00 2.78
556 557 4.939439 GTCCATTAGCTCCGGTTTTAGAAA 59.061 41.667 0.00 0.00 0.00 2.52
557 558 4.510571 GTCCATTAGCTCCGGTTTTAGAA 58.489 43.478 0.00 0.00 0.00 2.10
558 559 3.118519 GGTCCATTAGCTCCGGTTTTAGA 60.119 47.826 0.00 0.00 0.00 2.10
559 560 3.203716 GGTCCATTAGCTCCGGTTTTAG 58.796 50.000 0.00 0.00 0.00 1.85
560 561 2.572556 TGGTCCATTAGCTCCGGTTTTA 59.427 45.455 0.00 0.00 0.00 1.52
561 562 1.353022 TGGTCCATTAGCTCCGGTTTT 59.647 47.619 0.00 0.00 0.00 2.43
562 563 0.988832 TGGTCCATTAGCTCCGGTTT 59.011 50.000 0.00 0.00 0.00 3.27
563 564 0.541863 CTGGTCCATTAGCTCCGGTT 59.458 55.000 0.00 0.00 0.00 4.44
564 565 0.617820 ACTGGTCCATTAGCTCCGGT 60.618 55.000 0.00 0.00 35.09 5.28
565 566 0.105039 GACTGGTCCATTAGCTCCGG 59.895 60.000 0.00 0.00 0.00 5.14
566 567 1.115467 AGACTGGTCCATTAGCTCCG 58.885 55.000 0.00 0.00 0.00 4.63
567 568 4.755266 TTTAGACTGGTCCATTAGCTCC 57.245 45.455 0.00 0.00 0.00 4.70
568 569 8.613482 GTTTTATTTAGACTGGTCCATTAGCTC 58.387 37.037 0.00 0.00 0.00 4.09
569 570 7.280205 CGTTTTATTTAGACTGGTCCATTAGCT 59.720 37.037 0.00 0.00 0.00 3.32
570 571 7.407337 CGTTTTATTTAGACTGGTCCATTAGC 58.593 38.462 0.00 0.00 0.00 3.09
571 572 7.407337 GCGTTTTATTTAGACTGGTCCATTAG 58.593 38.462 0.00 0.00 0.00 1.73
572 573 6.316890 GGCGTTTTATTTAGACTGGTCCATTA 59.683 38.462 0.00 0.00 0.00 1.90
573 574 5.124936 GGCGTTTTATTTAGACTGGTCCATT 59.875 40.000 0.00 0.00 0.00 3.16
574 575 4.638865 GGCGTTTTATTTAGACTGGTCCAT 59.361 41.667 0.00 0.00 0.00 3.41
575 576 4.004982 GGCGTTTTATTTAGACTGGTCCA 58.995 43.478 0.00 0.00 0.00 4.02
576 577 4.259356 AGGCGTTTTATTTAGACTGGTCC 58.741 43.478 0.00 0.00 0.00 4.46
577 578 5.063564 CAGAGGCGTTTTATTTAGACTGGTC 59.936 44.000 0.00 0.00 0.00 4.02
578 579 4.935808 CAGAGGCGTTTTATTTAGACTGGT 59.064 41.667 0.00 0.00 0.00 4.00
579 580 5.175859 TCAGAGGCGTTTTATTTAGACTGG 58.824 41.667 0.00 0.00 0.00 4.00
580 581 6.369065 ACTTCAGAGGCGTTTTATTTAGACTG 59.631 38.462 0.00 0.00 0.00 3.51
581 582 6.369065 CACTTCAGAGGCGTTTTATTTAGACT 59.631 38.462 0.00 0.00 0.00 3.24
582 583 6.402226 CCACTTCAGAGGCGTTTTATTTAGAC 60.402 42.308 0.00 0.00 0.00 2.59
583 584 5.642063 CCACTTCAGAGGCGTTTTATTTAGA 59.358 40.000 0.00 0.00 0.00 2.10
584 585 5.642063 TCCACTTCAGAGGCGTTTTATTTAG 59.358 40.000 0.00 0.00 0.00 1.85
585 586 5.553123 TCCACTTCAGAGGCGTTTTATTTA 58.447 37.500 0.00 0.00 0.00 1.40
586 587 4.394729 TCCACTTCAGAGGCGTTTTATTT 58.605 39.130 0.00 0.00 0.00 1.40
587 588 4.003648 CTCCACTTCAGAGGCGTTTTATT 58.996 43.478 0.00 0.00 0.00 1.40
588 589 3.260884 TCTCCACTTCAGAGGCGTTTTAT 59.739 43.478 0.00 0.00 31.96 1.40
589 590 2.631062 TCTCCACTTCAGAGGCGTTTTA 59.369 45.455 0.00 0.00 31.96 1.52
590 591 1.416401 TCTCCACTTCAGAGGCGTTTT 59.584 47.619 0.00 0.00 31.96 2.43
591 592 1.001406 CTCTCCACTTCAGAGGCGTTT 59.999 52.381 0.00 0.00 34.75 3.60
592 593 0.605589 CTCTCCACTTCAGAGGCGTT 59.394 55.000 0.00 0.00 34.75 4.84
593 594 1.882989 GCTCTCCACTTCAGAGGCGT 61.883 60.000 0.00 0.00 38.31 5.68
594 595 1.153667 GCTCTCCACTTCAGAGGCG 60.154 63.158 0.00 0.00 38.31 5.52
595 596 0.175531 GAGCTCTCCACTTCAGAGGC 59.824 60.000 6.43 0.00 38.31 4.70
607 608 4.649218 AGATAGAAGTTGGAAGGAGCTCTC 59.351 45.833 14.64 3.85 0.00 3.20
608 609 4.619679 AGATAGAAGTTGGAAGGAGCTCT 58.380 43.478 14.64 0.00 0.00 4.09
609 610 5.115480 CAAGATAGAAGTTGGAAGGAGCTC 58.885 45.833 4.71 4.71 0.00 4.09
610 611 4.625083 GCAAGATAGAAGTTGGAAGGAGCT 60.625 45.833 0.00 0.00 0.00 4.09
611 612 3.625313 GCAAGATAGAAGTTGGAAGGAGC 59.375 47.826 0.00 0.00 0.00 4.70
612 613 4.874966 CAGCAAGATAGAAGTTGGAAGGAG 59.125 45.833 0.00 0.00 0.00 3.69
613 614 4.836825 CAGCAAGATAGAAGTTGGAAGGA 58.163 43.478 0.00 0.00 0.00 3.36
614 615 3.376546 GCAGCAAGATAGAAGTTGGAAGG 59.623 47.826 0.00 0.00 0.00 3.46
615 616 3.376546 GGCAGCAAGATAGAAGTTGGAAG 59.623 47.826 0.00 0.00 0.00 3.46
616 617 3.347216 GGCAGCAAGATAGAAGTTGGAA 58.653 45.455 0.00 0.00 0.00 3.53
617 618 2.677902 CGGCAGCAAGATAGAAGTTGGA 60.678 50.000 0.00 0.00 0.00 3.53
618 619 1.667724 CGGCAGCAAGATAGAAGTTGG 59.332 52.381 0.00 0.00 0.00 3.77
619 620 2.350522 ACGGCAGCAAGATAGAAGTTG 58.649 47.619 0.00 0.00 0.00 3.16
620 621 2.770164 ACGGCAGCAAGATAGAAGTT 57.230 45.000 0.00 0.00 0.00 2.66
621 622 3.786635 CTTACGGCAGCAAGATAGAAGT 58.213 45.455 0.00 0.00 0.00 3.01
622 623 2.541762 GCTTACGGCAGCAAGATAGAAG 59.458 50.000 0.52 0.00 39.83 2.85
623 624 2.550978 GCTTACGGCAGCAAGATAGAA 58.449 47.619 0.52 0.00 39.83 2.10
624 625 1.536072 CGCTTACGGCAGCAAGATAGA 60.536 52.381 0.52 0.00 40.09 1.98
625 626 0.855349 CGCTTACGGCAGCAAGATAG 59.145 55.000 0.52 0.00 40.09 2.08
626 627 0.458260 TCGCTTACGGCAGCAAGATA 59.542 50.000 0.52 0.00 40.09 1.98
627 628 0.807667 CTCGCTTACGGCAGCAAGAT 60.808 55.000 0.52 0.00 40.09 2.40
628 629 1.446099 CTCGCTTACGGCAGCAAGA 60.446 57.895 0.52 0.00 40.09 3.02
629 630 0.807667 ATCTCGCTTACGGCAGCAAG 60.808 55.000 8.62 0.00 40.09 4.01
630 631 0.458260 TATCTCGCTTACGGCAGCAA 59.542 50.000 8.62 0.00 40.09 3.91
631 632 0.673985 ATATCTCGCTTACGGCAGCA 59.326 50.000 8.62 0.00 40.09 4.41
632 633 2.520979 CTATATCTCGCTTACGGCAGC 58.479 52.381 0.00 0.00 41.91 5.25
633 634 2.162608 AGCTATATCTCGCTTACGGCAG 59.837 50.000 0.00 0.00 41.91 4.85
634 635 2.160205 AGCTATATCTCGCTTACGGCA 58.840 47.619 0.00 0.00 41.91 5.69
635 636 2.420722 AGAGCTATATCTCGCTTACGGC 59.579 50.000 0.00 0.00 40.63 5.68
636 637 4.267357 GAGAGCTATATCTCGCTTACGG 57.733 50.000 0.65 0.00 40.63 4.02
653 654 6.467723 AAACATGTTAACTTACTGCGAGAG 57.532 37.500 12.39 0.00 0.00 3.20
654 655 6.704493 AGAAAACATGTTAACTTACTGCGAGA 59.296 34.615 12.39 0.00 0.00 4.04
655 656 6.888430 AGAAAACATGTTAACTTACTGCGAG 58.112 36.000 12.39 0.00 0.00 5.03
656 657 6.854496 AGAAAACATGTTAACTTACTGCGA 57.146 33.333 12.39 0.00 0.00 5.10
657 658 7.855904 AGAAAGAAAACATGTTAACTTACTGCG 59.144 33.333 21.86 0.00 0.00 5.18
658 659 9.170584 GAGAAAGAAAACATGTTAACTTACTGC 57.829 33.333 21.86 14.85 0.00 4.40
667 668 8.717821 CGTCCTATTGAGAAAGAAAACATGTTA 58.282 33.333 12.39 0.00 0.00 2.41
668 669 7.308589 CCGTCCTATTGAGAAAGAAAACATGTT 60.309 37.037 4.92 4.92 0.00 2.71
669 670 6.149474 CCGTCCTATTGAGAAAGAAAACATGT 59.851 38.462 0.00 0.00 0.00 3.21
670 671 6.371548 TCCGTCCTATTGAGAAAGAAAACATG 59.628 38.462 0.00 0.00 0.00 3.21
671 672 6.371825 GTCCGTCCTATTGAGAAAGAAAACAT 59.628 38.462 0.00 0.00 0.00 2.71
672 673 5.699458 GTCCGTCCTATTGAGAAAGAAAACA 59.301 40.000 0.00 0.00 0.00 2.83
673 674 5.932883 AGTCCGTCCTATTGAGAAAGAAAAC 59.067 40.000 0.00 0.00 0.00 2.43
674 675 6.110411 AGTCCGTCCTATTGAGAAAGAAAA 57.890 37.500 0.00 0.00 0.00 2.29
675 676 5.740290 AGTCCGTCCTATTGAGAAAGAAA 57.260 39.130 0.00 0.00 0.00 2.52
676 677 6.238676 CGATAGTCCGTCCTATTGAGAAAGAA 60.239 42.308 1.36 0.00 32.59 2.52
677 678 5.238868 CGATAGTCCGTCCTATTGAGAAAGA 59.761 44.000 1.36 0.00 32.59 2.52
678 679 5.453648 CGATAGTCCGTCCTATTGAGAAAG 58.546 45.833 1.36 0.00 32.59 2.62
679 680 4.261489 GCGATAGTCCGTCCTATTGAGAAA 60.261 45.833 9.07 0.00 32.59 2.52
680 681 3.252701 GCGATAGTCCGTCCTATTGAGAA 59.747 47.826 9.07 0.00 32.59 2.87
681 682 2.812591 GCGATAGTCCGTCCTATTGAGA 59.187 50.000 9.07 0.00 32.59 3.27
682 683 2.552743 TGCGATAGTCCGTCCTATTGAG 59.447 50.000 9.07 0.46 32.59 3.02
683 684 2.578786 TGCGATAGTCCGTCCTATTGA 58.421 47.619 9.07 0.00 32.59 2.57
684 685 3.364889 TTGCGATAGTCCGTCCTATTG 57.635 47.619 0.00 2.79 39.35 1.90
685 686 4.602340 AATTGCGATAGTCCGTCCTATT 57.398 40.909 0.00 0.00 39.35 1.73
686 687 5.010314 TGTTAATTGCGATAGTCCGTCCTAT 59.990 40.000 0.00 0.00 39.35 2.57
687 688 4.338964 TGTTAATTGCGATAGTCCGTCCTA 59.661 41.667 0.00 0.00 39.35 2.94
688 689 3.131577 TGTTAATTGCGATAGTCCGTCCT 59.868 43.478 0.00 0.00 39.35 3.85
689 690 3.244579 GTGTTAATTGCGATAGTCCGTCC 59.755 47.826 0.00 0.00 39.35 4.79
690 691 3.861113 TGTGTTAATTGCGATAGTCCGTC 59.139 43.478 0.00 0.00 39.35 4.79
691 692 3.615496 GTGTGTTAATTGCGATAGTCCGT 59.385 43.478 0.00 0.00 39.35 4.69
692 693 3.863424 AGTGTGTTAATTGCGATAGTCCG 59.137 43.478 0.00 0.00 39.35 4.79
693 694 4.494199 GCAGTGTGTTAATTGCGATAGTCC 60.494 45.833 0.00 0.00 39.35 3.85
694 695 4.092821 TGCAGTGTGTTAATTGCGATAGTC 59.907 41.667 0.00 0.00 39.34 2.59
695 696 4.000325 TGCAGTGTGTTAATTGCGATAGT 59.000 39.130 0.00 0.00 39.34 2.12
696 697 4.142924 TGTGCAGTGTGTTAATTGCGATAG 60.143 41.667 0.00 0.00 39.34 2.08
697 698 3.748568 TGTGCAGTGTGTTAATTGCGATA 59.251 39.130 0.00 0.00 39.34 2.92
698 699 2.551887 TGTGCAGTGTGTTAATTGCGAT 59.448 40.909 0.00 0.00 39.34 4.58
699 700 1.943340 TGTGCAGTGTGTTAATTGCGA 59.057 42.857 0.00 0.00 39.34 5.10
700 701 2.309693 CTGTGCAGTGTGTTAATTGCG 58.690 47.619 0.00 0.00 39.34 4.85
701 702 2.053627 GCTGTGCAGTGTGTTAATTGC 58.946 47.619 0.00 0.00 37.09 3.56
752 753 3.330720 AGCCCAGGAGTTTCGGGG 61.331 66.667 0.00 0.00 43.72 5.73
755 756 0.035056 ATTCCAGCCCAGGAGTTTCG 60.035 55.000 0.00 0.00 39.25 3.46
773 774 0.400594 GGGTATTGGGCTAGCGGAAT 59.599 55.000 9.00 11.37 0.00 3.01
778 779 2.430367 CGGGGGTATTGGGCTAGC 59.570 66.667 6.04 6.04 0.00 3.42
808 810 5.011090 AGAGAACAAAGGAAAAAGTTGGC 57.989 39.130 0.00 0.00 0.00 4.52
818 820 1.967319 AAGCGCAAGAGAACAAAGGA 58.033 45.000 11.47 0.00 43.02 3.36
820 822 2.605580 GGGAAAGCGCAAGAGAACAAAG 60.606 50.000 11.47 0.00 43.02 2.77
841 850 4.803098 TTCTCTACCTTTCCTCCTTTCG 57.197 45.455 0.00 0.00 0.00 3.46
856 865 4.398044 GGATTTGGGTGCGATTTTTCTCTA 59.602 41.667 0.00 0.00 0.00 2.43
921 932 1.885871 GAATCTGTGTTGCCCTGCC 59.114 57.895 0.00 0.00 0.00 4.85
955 966 0.399454 ATCTGATGGGGAATGCTCGG 59.601 55.000 0.00 0.00 0.00 4.63
1183 1198 1.300481 GGATAACAAGCGAGAAGGCC 58.700 55.000 0.00 0.00 0.00 5.19
1213 1228 1.432251 CGACACAGGGTAGGCGTAG 59.568 63.158 0.00 0.00 0.00 3.51
1234 1249 1.066422 CGCAGCATTAGAGAGCGGA 59.934 57.895 0.00 0.00 44.20 5.54
1286 1301 0.810031 CCTTGCCCACGTCCTTATCG 60.810 60.000 0.00 0.00 0.00 2.92
1368 1383 0.801251 GACAAGGCATGAGCTCACAC 59.199 55.000 20.97 13.99 41.70 3.82
1378 1393 6.884836 CCTAGTTTTAGGTTTAGACAAGGCAT 59.115 38.462 0.00 0.00 41.42 4.40
1407 1443 6.127647 ACAACACACATCAATTTGACTGAAGT 60.128 34.615 0.15 3.06 0.00 3.01
1408 1444 6.197655 CACAACACACATCAATTTGACTGAAG 59.802 38.462 0.15 2.53 0.00 3.02
1412 1448 5.581126 ACACAACACACATCAATTTGACT 57.419 34.783 0.15 0.00 0.00 3.41
1490 1526 4.537015 CAACCTTTTTCTTGAGCTTACCG 58.463 43.478 0.00 0.00 0.00 4.02
1531 1567 9.890629 AGCATCTAGAAATTCAACTGTGTAATA 57.109 29.630 0.00 0.00 0.00 0.98
1532 1568 8.798859 AGCATCTAGAAATTCAACTGTGTAAT 57.201 30.769 0.00 0.00 0.00 1.89
1545 1581 9.545105 CTCAATTTCAGACTAGCATCTAGAAAT 57.455 33.333 7.77 11.08 37.67 2.17
1586 1642 1.923356 ACATTGGCCCGAACTCAAAT 58.077 45.000 0.00 0.00 0.00 2.32
1635 1692 7.152645 GTCCTACACATTAAAAGAGACACTGA 58.847 38.462 0.00 0.00 0.00 3.41
1638 1695 7.571428 GCTTGTCCTACACATTAAAAGAGACAC 60.571 40.741 0.00 0.00 33.90 3.67
1643 1700 6.995686 TCTTGCTTGTCCTACACATTAAAAGA 59.004 34.615 0.00 0.00 33.90 2.52
1649 1706 3.073062 ACCTCTTGCTTGTCCTACACATT 59.927 43.478 0.00 0.00 33.90 2.71
1820 1899 6.511416 CCTGGATCTAACATCTACAGAACAG 58.489 44.000 0.00 0.00 32.00 3.16
1834 1913 2.470990 TCAGCTCAAGCCTGGATCTAA 58.529 47.619 0.00 0.00 43.38 2.10
2018 2097 6.919775 AAGCCTTCGTAGTTCCATAGATAT 57.080 37.500 0.00 0.00 0.00 1.63
2216 2357 1.677576 CGGCCATGAAAGCATACATGT 59.322 47.619 2.24 2.69 41.26 3.21
2234 2376 4.631377 TCAAGTTGATCAGAATGCTAACGG 59.369 41.667 0.08 0.00 34.76 4.44
2347 2489 6.263168 ACTTCCATAGTTTCACTTTCTTGGTG 59.737 38.462 0.00 0.00 31.29 4.17
2436 2579 2.507058 TGCCAGATCTCCACAAAGCTAT 59.493 45.455 0.00 0.00 0.00 2.97
2492 2635 5.437289 CTCAAAACACCATTGAGCTAACA 57.563 39.130 3.61 0.00 45.02 2.41
2593 2736 3.949754 TGATGAAGGATTGATGAGGTTGC 59.050 43.478 0.00 0.00 0.00 4.17
2639 2783 8.495949 CCACAGTATTACGGAACATATTTCATC 58.504 37.037 0.78 0.00 0.00 2.92
2652 2796 4.038763 TCCAGAATAGCCACAGTATTACGG 59.961 45.833 0.00 0.00 0.00 4.02
2724 2869 4.563184 TGTTCAACCGCAAAAACATAACAC 59.437 37.500 0.00 0.00 0.00 3.32
2920 3069 5.592688 GGTGTATGCCTTGTAAACCATATGT 59.407 40.000 1.24 0.00 31.02 2.29
3041 3191 1.068333 CCACAAGTCAAAATGGAGCGG 60.068 52.381 0.00 0.00 33.80 5.52
3146 3296 4.284490 ACATATGGATGTCATACTCGCCTT 59.716 41.667 7.80 0.00 43.01 4.35
3179 3329 7.602753 ACTAGGATTCAAAAGCACATTAAACC 58.397 34.615 0.00 0.00 0.00 3.27
3209 3360 6.148811 CACGGATAGTTGGTACTGAATTGTTT 59.851 38.462 0.00 0.00 35.78 2.83
3231 3382 1.478510 ACTTATCTCTGCAGGTCCACG 59.521 52.381 15.13 1.72 0.00 4.94
3276 3427 4.629200 CAGACTGTTCCTATGAAAGCAGAC 59.371 45.833 5.69 1.13 32.03 3.51
3368 3527 9.775854 AACAAAATGATGACAAAATACCAATGA 57.224 25.926 0.00 0.00 0.00 2.57
3395 3554 6.263392 GCTATCTAGTTCACACAGGACTATGA 59.737 42.308 0.00 0.00 0.00 2.15
3398 3557 4.888239 GGCTATCTAGTTCACACAGGACTA 59.112 45.833 0.00 0.00 0.00 2.59
3615 3778 1.456287 GAACCTTGTGTGAGGCCCT 59.544 57.895 0.00 0.00 40.65 5.19
3625 3788 0.317479 CTCCTTCGGACGAACCTTGT 59.683 55.000 2.62 0.00 36.31 3.16
3647 3810 3.121738 AGTGCCAGGGCGTTATATAAC 57.878 47.619 14.55 14.55 45.51 1.89
3654 3817 0.827507 ATGAAAAGTGCCAGGGCGTT 60.828 50.000 5.74 0.00 45.51 4.84
3716 3911 6.608405 TCTTATATTTGTGAACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
3717 3912 5.424252 TCTTATATTTGTGAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
3718 3913 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
3719 3914 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
3720 3915 6.525629 AGATCTTATATTTGTGAACGGAGGG 58.474 40.000 0.00 0.00 0.00 4.30
3762 3957 9.108284 CACATTAAACATGTCTACATACATCCA 57.892 33.333 0.00 0.00 38.01 3.41
3774 3969 7.426929 AGAGAACAGACACATTAAACATGTC 57.573 36.000 0.00 8.37 42.54 3.06
3775 3970 8.902540 TTAGAGAACAGACACATTAAACATGT 57.097 30.769 0.00 0.00 0.00 3.21
3790 3985 7.036220 ACATACGGACTGAAATTAGAGAACAG 58.964 38.462 0.00 0.00 35.14 3.16
3867 4062 7.183839 TCACCCCCATCAACCTATATTATAAGG 59.816 40.741 0.00 0.00 38.93 2.69
3874 4069 5.375354 TGAATTCACCCCCATCAACCTATAT 59.625 40.000 3.38 0.00 0.00 0.86
3878 4073 1.715931 TGAATTCACCCCCATCAACCT 59.284 47.619 3.38 0.00 0.00 3.50
3890 4085 1.390463 GAACGAGGCGAGTGAATTCAC 59.610 52.381 27.69 27.69 46.77 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.