Multiple sequence alignment - TraesCS3D01G106600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G106600 chr3D 100.000 6936 0 0 1 6936 58596582 58589647 0.000000e+00 12809.0
1 TraesCS3D01G106600 chr3D 97.070 3038 81 6 3752 6785 591948879 591945846 0.000000e+00 5110.0
2 TraesCS3D01G106600 chr3D 97.546 163 3 1 6775 6936 69033929 69034091 1.910000e-70 278.0
3 TraesCS3D01G106600 chr3D 86.545 275 8 14 3417 3684 58527472 58527220 6.850000e-70 276.0
4 TraesCS3D01G106600 chr3D 85.556 90 11 2 3278 3367 58562420 58562333 7.410000e-15 93.5
5 TraesCS3D01G106600 chr3D 100.000 36 0 0 3276 3311 58527591 58527556 4.490000e-07 67.6
6 TraesCS3D01G106600 chr7D 97.268 3038 75 8 3752 6785 527991905 527988872 0.000000e+00 5144.0
7 TraesCS3D01G106600 chr7D 96.909 3041 89 5 3748 6785 520314410 520311372 0.000000e+00 5090.0
8 TraesCS3D01G106600 chr7D 96.557 3050 91 9 3748 6785 421088204 421091251 0.000000e+00 5038.0
9 TraesCS3D01G106600 chr1D 97.168 3037 81 5 3752 6785 487225894 487228928 0.000000e+00 5127.0
10 TraesCS3D01G106600 chr1D 96.711 3040 91 8 3751 6785 7651852 7648817 0.000000e+00 5051.0
11 TraesCS3D01G106600 chr2D 96.941 3040 85 6 3752 6785 37413177 37416214 0.000000e+00 5092.0
12 TraesCS3D01G106600 chr2D 97.546 163 3 1 6775 6936 10695500 10695662 1.910000e-70 278.0
13 TraesCS3D01G106600 chr2D 97.546 163 3 1 6775 6936 411675103 411675265 1.910000e-70 278.0
14 TraesCS3D01G106600 chr2D 98.077 156 3 0 6781 6936 481536000 481536155 8.860000e-69 272.0
15 TraesCS3D01G106600 chr4D 96.691 3052 77 11 3750 6785 82043883 82040840 0.000000e+00 5055.0
16 TraesCS3D01G106600 chr4D 96.933 163 4 1 6775 6936 68763023 68763185 8.860000e-69 272.0
17 TraesCS3D01G106600 chrUn 96.518 3044 94 11 3748 6785 89011534 89008497 0.000000e+00 5024.0
18 TraesCS3D01G106600 chrUn 99.346 153 1 0 6784 6936 101747230 101747382 1.910000e-70 278.0
19 TraesCS3D01G106600 chr3A 90.466 2318 118 49 1417 3684 67787545 67785281 0.000000e+00 2961.0
20 TraesCS3D01G106600 chr3A 87.694 902 57 33 2880 3753 67581405 67580530 0.000000e+00 1002.0
21 TraesCS3D01G106600 chr3A 86.076 869 65 27 551 1387 67788449 67787605 0.000000e+00 883.0
22 TraesCS3D01G106600 chr3A 93.512 447 27 2 2411 2857 67581960 67581516 0.000000e+00 664.0
23 TraesCS3D01G106600 chr3A 79.570 186 22 9 1045 1230 67764915 67764746 1.220000e-22 119.0
24 TraesCS3D01G106600 chr3A 79.878 164 22 6 3482 3638 67557544 67557385 7.360000e-20 110.0
25 TraesCS3D01G106600 chr3A 100.000 39 0 0 3252 3290 67578063 67578025 9.650000e-09 73.1
26 TraesCS3D01G106600 chr3B 89.717 2159 103 52 1417 3495 94492978 94490859 0.000000e+00 2647.0
27 TraesCS3D01G106600 chr3B 89.571 2167 104 66 1417 3495 93893296 93891164 0.000000e+00 2638.0
28 TraesCS3D01G106600 chr3B 87.731 1516 80 50 2218 3684 93361967 93360509 0.000000e+00 1672.0
29 TraesCS3D01G106600 chr3B 87.895 1297 73 43 2414 3684 93461389 93460151 0.000000e+00 1448.0
30 TraesCS3D01G106600 chr3B 89.091 880 50 20 549 1414 94493867 94493020 0.000000e+00 1051.0
31 TraesCS3D01G106600 chr3B 89.895 762 47 18 664 1414 93894080 93893338 0.000000e+00 953.0
32 TraesCS3D01G106600 chr3B 85.748 842 26 26 2090 2857 94447589 94446768 0.000000e+00 804.0
33 TraesCS3D01G106600 chr3B 88.095 504 39 10 6 499 94495672 94495180 4.660000e-161 579.0
34 TraesCS3D01G106600 chr3B 80.412 485 57 21 9 489 93895888 93895438 1.110000e-87 335.0
35 TraesCS3D01G106600 chr3B 96.447 197 7 0 2032 2228 93362626 93362430 6.710000e-85 326.0
36 TraesCS3D01G106600 chr3B 96.447 197 7 0 2032 2228 93472084 93471888 6.710000e-85 326.0
37 TraesCS3D01G106600 chr3B 85.714 224 8 9 2218 2417 93471425 93471202 1.520000e-51 215.0
38 TraesCS3D01G106600 chr3B 84.756 164 6 3 3521 3684 93891171 93891027 5.610000e-31 147.0
39 TraesCS3D01G106600 chr3B 83.851 161 7 9 3524 3684 94490863 94490722 1.210000e-27 135.0
40 TraesCS3D01G106600 chr3B 96.875 64 2 0 2032 2095 94449142 94449079 2.650000e-19 108.0
41 TraesCS3D01G106600 chr2A 98.089 157 2 1 6781 6936 709879159 709879003 8.860000e-69 272.0
42 TraesCS3D01G106600 chr6D 96.341 164 4 2 6775 6936 448232942 448232779 1.150000e-67 268.0
43 TraesCS3D01G106600 chr6D 96.319 163 5 1 6775 6936 449953773 449953935 4.120000e-67 267.0
44 TraesCS3D01G106600 chr4A 93.496 123 8 0 3741 3863 638483699 638483821 4.270000e-42 183.0
45 TraesCS3D01G106600 chr4A 100.000 29 0 0 280 308 552195786 552195814 3.000000e-03 54.7
46 TraesCS3D01G106600 chr1A 100.000 28 0 0 281 308 447718767 447718740 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G106600 chr3D 58589647 58596582 6935 True 12809.00 12809 100.000000 1 6936 1 chr3D.!!$R2 6935
1 TraesCS3D01G106600 chr3D 591945846 591948879 3033 True 5110.00 5110 97.070000 3752 6785 1 chr3D.!!$R3 3033
2 TraesCS3D01G106600 chr7D 527988872 527991905 3033 True 5144.00 5144 97.268000 3752 6785 1 chr7D.!!$R2 3033
3 TraesCS3D01G106600 chr7D 520311372 520314410 3038 True 5090.00 5090 96.909000 3748 6785 1 chr7D.!!$R1 3037
4 TraesCS3D01G106600 chr7D 421088204 421091251 3047 False 5038.00 5038 96.557000 3748 6785 1 chr7D.!!$F1 3037
5 TraesCS3D01G106600 chr1D 487225894 487228928 3034 False 5127.00 5127 97.168000 3752 6785 1 chr1D.!!$F1 3033
6 TraesCS3D01G106600 chr1D 7648817 7651852 3035 True 5051.00 5051 96.711000 3751 6785 1 chr1D.!!$R1 3034
7 TraesCS3D01G106600 chr2D 37413177 37416214 3037 False 5092.00 5092 96.941000 3752 6785 1 chr2D.!!$F2 3033
8 TraesCS3D01G106600 chr4D 82040840 82043883 3043 True 5055.00 5055 96.691000 3750 6785 1 chr4D.!!$R1 3035
9 TraesCS3D01G106600 chrUn 89008497 89011534 3037 True 5024.00 5024 96.518000 3748 6785 1 chrUn.!!$R1 3037
10 TraesCS3D01G106600 chr3A 67785281 67788449 3168 True 1922.00 2961 88.271000 551 3684 2 chr3A.!!$R4 3133
11 TraesCS3D01G106600 chr3A 67578025 67581960 3935 True 579.70 1002 93.735333 2411 3753 3 chr3A.!!$R3 1342
12 TraesCS3D01G106600 chr3B 93460151 93461389 1238 True 1448.00 1448 87.895000 2414 3684 1 chr3B.!!$R1 1270
13 TraesCS3D01G106600 chr3B 94490722 94495672 4950 True 1103.00 2647 87.688500 6 3684 4 chr3B.!!$R6 3678
14 TraesCS3D01G106600 chr3B 93891027 93895888 4861 True 1018.25 2638 86.158500 9 3684 4 chr3B.!!$R4 3675
15 TraesCS3D01G106600 chr3B 93360509 93362626 2117 True 999.00 1672 92.089000 2032 3684 2 chr3B.!!$R2 1652
16 TraesCS3D01G106600 chr3B 94446768 94449142 2374 True 456.00 804 91.311500 2032 2857 2 chr3B.!!$R5 825
17 TraesCS3D01G106600 chr3B 93471202 93472084 882 True 270.50 326 91.080500 2032 2417 2 chr3B.!!$R3 385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
754 2441 1.067295 TCCCAAAGTCCTGCATCAGT 58.933 50.000 0.00 0.00 0.00 3.41 F
1012 2712 0.813184 TTAGCTTCCTCGTGTACGGG 59.187 55.000 4.44 0.24 40.09 5.28 F
2428 6250 0.976641 TCAAGTCCAAGGTCTGCGAT 59.023 50.000 0.00 0.00 0.00 4.58 F
3599 7594 0.164217 GCAACGGACGAATAACGCAA 59.836 50.000 0.00 0.00 46.94 4.85 F
4182 9423 1.064296 CCGACTTCGTGGAGATCGG 59.936 63.158 0.00 0.00 45.61 4.18 F
5115 10449 0.675633 AGTACACACGGGTACACACC 59.324 55.000 11.94 0.00 44.76 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2131 5404 0.675837 GCTGGAAGTGATGCTGCTGA 60.676 55.0 0.00 0.0 40.44 4.26 R
2569 6405 0.878523 TCTTCACCGTGCAAACCTCG 60.879 55.0 0.00 0.0 0.00 4.63 R
4106 9347 0.103208 ATCGAGGATCTTGCGTGGAC 59.897 55.0 0.00 0.0 0.00 4.02 R
4613 9859 0.173481 CGCCGTTCAGATGAGGAGAA 59.827 55.0 0.00 0.0 0.00 2.87 R
5361 10700 0.798159 TCGTACGTGCGTGTACTGAT 59.202 50.0 24.94 0.0 42.00 2.90 R
6902 12546 0.039256 ATGTTGGCGTGTGCATTGTC 60.039 50.0 0.00 0.0 45.35 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 3.194005 ACACCACTCAGTTTGTACCAG 57.806 47.619 0.00 0.00 0.00 4.00
115 116 2.039613 TCAGTGGACCACAATACATGCA 59.960 45.455 26.30 0.00 36.74 3.96
163 164 4.946478 ATCCGGGAAGAAGATTAGAGTG 57.054 45.455 0.00 0.00 0.00 3.51
170 171 5.106515 GGGAAGAAGATTAGAGTGTGTTTGC 60.107 44.000 0.00 0.00 0.00 3.68
176 178 3.394674 TTAGAGTGTGTTTGCGGATGA 57.605 42.857 0.00 0.00 0.00 2.92
199 202 6.922957 TGATTTAGTGAATGTTGGCTGTTTTC 59.077 34.615 0.00 0.00 0.00 2.29
202 207 2.365293 GTGAATGTTGGCTGTTTTCCCT 59.635 45.455 0.00 0.00 0.00 4.20
203 208 3.037549 TGAATGTTGGCTGTTTTCCCTT 58.962 40.909 0.00 0.00 0.00 3.95
204 209 3.454082 TGAATGTTGGCTGTTTTCCCTTT 59.546 39.130 0.00 0.00 0.00 3.11
205 210 4.080638 TGAATGTTGGCTGTTTTCCCTTTT 60.081 37.500 0.00 0.00 0.00 2.27
206 211 3.990959 TGTTGGCTGTTTTCCCTTTTT 57.009 38.095 0.00 0.00 0.00 1.94
207 212 3.867857 TGTTGGCTGTTTTCCCTTTTTC 58.132 40.909 0.00 0.00 0.00 2.29
208 213 3.202906 GTTGGCTGTTTTCCCTTTTTCC 58.797 45.455 0.00 0.00 0.00 3.13
209 214 1.765904 TGGCTGTTTTCCCTTTTTCCC 59.234 47.619 0.00 0.00 0.00 3.97
210 215 2.047061 GGCTGTTTTCCCTTTTTCCCT 58.953 47.619 0.00 0.00 0.00 4.20
218 223 4.764050 TTCCCTTTTTCCCTTTTTGTCC 57.236 40.909 0.00 0.00 0.00 4.02
265 270 4.038162 CCTCCGTTCCAAAATAAAACCACA 59.962 41.667 0.00 0.00 0.00 4.17
316 322 7.244166 TCACGACAAGTATTTTTAAACGGAA 57.756 32.000 0.00 0.00 0.00 4.30
355 372 8.722480 TCCTAACATGAATCAATTACTCAGTG 57.278 34.615 0.00 0.00 0.00 3.66
384 402 6.429692 TGAAATGCCTCGAAAAAGATGAACTA 59.570 34.615 0.00 0.00 0.00 2.24
416 434 5.290885 TGATATCCACGCAATATACAATCGC 59.709 40.000 0.00 0.00 0.00 4.58
437 455 4.168760 GCGCGGAAGTAACTAAAGAAGTA 58.831 43.478 8.83 0.00 37.50 2.24
489 507 5.854431 TTTTTCTTGTTGACCAAAAGTGC 57.146 34.783 0.00 0.00 31.20 4.40
494 2137 2.175202 TGTTGACCAAAAGTGCCAAGT 58.825 42.857 0.00 0.00 0.00 3.16
497 2140 4.109766 GTTGACCAAAAGTGCCAAGTTAC 58.890 43.478 0.00 0.00 0.00 2.50
499 2142 4.020543 TGACCAAAAGTGCCAAGTTACTT 58.979 39.130 0.00 0.00 38.70 2.24
500 2143 4.142271 TGACCAAAAGTGCCAAGTTACTTG 60.142 41.667 17.37 17.37 40.75 3.16
508 2151 2.299582 TGCCAAGTTACTTGCATGCATT 59.700 40.909 23.37 14.28 39.85 3.56
577 2248 4.802918 GCTGAAGCAACTAAGAAGGTACCA 60.803 45.833 15.94 0.00 41.59 3.25
638 2315 6.909550 AAGGTTTAAGTTCCATGCACATAA 57.090 33.333 0.00 0.00 0.00 1.90
754 2441 1.067295 TCCCAAAGTCCTGCATCAGT 58.933 50.000 0.00 0.00 0.00 3.41
814 2503 7.993821 ATAGTTTGTCGACATCATCAACTAG 57.006 36.000 29.25 0.00 0.00 2.57
1007 2707 2.612972 CCACACATTAGCTTCCTCGTGT 60.613 50.000 0.00 0.00 38.07 4.49
1012 2712 0.813184 TTAGCTTCCTCGTGTACGGG 59.187 55.000 4.44 0.24 40.09 5.28
1025 2725 1.022982 GTACGGGTTGCCACTAAGCC 61.023 60.000 0.00 0.00 43.13 4.35
1142 2850 4.408821 GCATCACCTGGTCGCCCA 62.409 66.667 0.00 0.00 38.87 5.36
1279 2992 1.670674 CCTCGATCGGTTTCGGTTCAA 60.671 52.381 16.41 0.00 39.56 2.69
1284 2997 2.873604 CGGTTTCGGTTCAACGCGT 61.874 57.895 5.58 5.58 0.00 6.01
1299 3012 4.758165 TCAACGCGTACAGATATCCATCTA 59.242 41.667 14.46 0.00 39.62 1.98
1300 3013 4.948608 ACGCGTACAGATATCCATCTAG 57.051 45.455 11.67 0.00 39.62 2.43
1302 3015 3.375610 CGCGTACAGATATCCATCTAGCT 59.624 47.826 0.00 0.00 39.62 3.32
1303 3016 4.571176 CGCGTACAGATATCCATCTAGCTA 59.429 45.833 0.00 0.00 39.62 3.32
1308 3021 6.146140 ACAGATATCCATCTAGCTACCAGA 57.854 41.667 0.00 0.00 39.62 3.86
1414 3127 3.601435 TCACGGCGATCCTTTGATTAAA 58.399 40.909 16.62 0.00 0.00 1.52
1415 3128 4.004314 TCACGGCGATCCTTTGATTAAAA 58.996 39.130 16.62 0.00 0.00 1.52
1435 3187 6.541111 AAAAAGCTTCGGTTCTACTAGTTG 57.459 37.500 0.00 0.00 0.00 3.16
1441 3193 6.377712 AGCTTCGGTTCTACTAGTTGATTAGT 59.622 38.462 7.86 0.00 37.61 2.24
1501 3254 5.070847 TGATGGATCTCTTTGTATGCAGCTA 59.929 40.000 0.00 0.00 31.97 3.32
1550 3306 2.650116 GGAGGAAGAGGAGCGCACA 61.650 63.158 11.47 0.00 0.00 4.57
1592 3352 2.960384 CCAGGCAAGCATCCATTGATTA 59.040 45.455 0.00 0.00 30.59 1.75
1692 3452 2.503061 CATGGAGGACGAGCCAGG 59.497 66.667 0.00 0.00 40.02 4.45
1693 3453 3.474570 ATGGAGGACGAGCCAGGC 61.475 66.667 1.84 1.84 40.02 4.85
1803 3578 2.055042 CCTCCTCGTCCTCCACCTG 61.055 68.421 0.00 0.00 0.00 4.00
1846 3624 3.589654 TTGCAGCCCGGAGAACTCG 62.590 63.158 0.73 0.00 0.00 4.18
1916 3694 4.647615 CCTCGCATCTACCGCCGG 62.648 72.222 0.00 0.00 0.00 6.13
1988 3766 4.545706 CGGCCGCAATGGAGCCTA 62.546 66.667 14.67 0.00 44.84 3.93
2131 5404 1.447643 GGCGATGAGGTACAGCCAT 59.552 57.895 0.00 0.00 46.48 4.40
2428 6250 0.976641 TCAAGTCCAAGGTCTGCGAT 59.023 50.000 0.00 0.00 0.00 4.58
2569 6405 0.739561 AAGATGGGACGACTACGAGC 59.260 55.000 0.00 0.00 42.66 5.03
2920 6864 3.160545 CGGTAATTTGATCACGTGTTGC 58.839 45.455 16.51 4.69 0.00 4.17
3004 6955 1.567504 GTGCACACGTGAACAGTACT 58.432 50.000 25.01 0.00 38.99 2.73
3006 6957 2.724690 GTGCACACGTGAACAGTACTAG 59.275 50.000 25.01 0.00 38.99 2.57
3007 6958 2.359848 TGCACACGTGAACAGTACTAGT 59.640 45.455 25.01 0.00 0.00 2.57
3008 6959 3.565063 TGCACACGTGAACAGTACTAGTA 59.435 43.478 25.01 0.00 0.00 1.82
3009 6960 4.036616 TGCACACGTGAACAGTACTAGTAA 59.963 41.667 25.01 0.00 0.00 2.24
3010 6961 4.615961 GCACACGTGAACAGTACTAGTAAG 59.384 45.833 25.01 3.16 0.00 2.34
3011 6962 4.615961 CACACGTGAACAGTACTAGTAAGC 59.384 45.833 25.01 0.00 0.00 3.09
3012 6963 4.518211 ACACGTGAACAGTACTAGTAAGCT 59.482 41.667 25.01 0.00 0.00 3.74
3013 6964 5.702670 ACACGTGAACAGTACTAGTAAGCTA 59.297 40.000 25.01 0.00 0.00 3.32
3018 6969 7.201591 CGTGAACAGTACTAGTAAGCTAAGCTA 60.202 40.741 3.61 0.00 38.25 3.32
3020 6971 8.457261 TGAACAGTACTAGTAAGCTAAGCTAAC 58.543 37.037 3.61 0.00 38.25 2.34
3022 6973 7.118060 ACAGTACTAGTAAGCTAAGCTAACCT 58.882 38.462 3.61 0.00 38.25 3.50
3154 7119 6.260377 ACATGATGATGAAAAGTAACGCATG 58.740 36.000 0.00 0.00 36.43 4.06
3259 7229 2.674220 CCAAGTGGGAGGAGGAGGC 61.674 68.421 0.00 0.00 40.01 4.70
3360 7330 0.657312 CGCCGAATGATTAAGCTGCA 59.343 50.000 1.02 0.00 0.00 4.41
3361 7331 1.265095 CGCCGAATGATTAAGCTGCAT 59.735 47.619 1.02 0.00 0.00 3.96
3362 7332 2.658285 GCCGAATGATTAAGCTGCATG 58.342 47.619 1.02 0.00 0.00 4.06
3363 7333 2.658285 CCGAATGATTAAGCTGCATGC 58.342 47.619 11.82 11.82 43.29 4.06
3373 7343 1.449778 GCTGCATGCTGCTCTCTCA 60.450 57.895 34.29 5.40 45.31 3.27
3375 7345 0.812014 CTGCATGCTGCTCTCTCAGG 60.812 60.000 20.33 0.00 45.31 3.86
3376 7346 1.262640 TGCATGCTGCTCTCTCAGGA 61.263 55.000 20.33 0.00 45.31 3.86
3377 7347 0.531090 GCATGCTGCTCTCTCAGGAG 60.531 60.000 11.37 0.00 43.53 3.69
3378 7348 1.112950 CATGCTGCTCTCTCAGGAGA 58.887 55.000 0.00 0.00 43.35 3.71
3379 7349 1.481363 CATGCTGCTCTCTCAGGAGAA 59.519 52.381 0.00 0.00 46.50 2.87
3380 7350 0.894141 TGCTGCTCTCTCAGGAGAAC 59.106 55.000 0.00 0.00 46.50 3.01
3381 7351 0.179140 GCTGCTCTCTCAGGAGAACG 60.179 60.000 0.08 0.00 46.50 3.95
3382 7352 0.179140 CTGCTCTCTCAGGAGAACGC 60.179 60.000 10.73 10.73 46.50 4.84
3383 7353 1.140804 GCTCTCTCAGGAGAACGCC 59.859 63.158 0.08 0.00 46.50 5.68
3384 7354 1.431440 CTCTCTCAGGAGAACGCCG 59.569 63.158 0.08 0.00 46.50 6.46
3385 7355 1.999071 CTCTCTCAGGAGAACGCCGG 61.999 65.000 0.00 0.00 46.50 6.13
3386 7356 3.708220 CTCTCAGGAGAACGCCGGC 62.708 68.421 19.07 19.07 41.86 6.13
3387 7357 4.821589 CTCAGGAGAACGCCGGCC 62.822 72.222 23.46 7.02 0.00 6.13
3408 7378 1.964891 TCTCGGTTCGTCGTGCTCT 60.965 57.895 0.00 0.00 0.00 4.09
3541 7529 5.711506 TGATGCATGGACAATTCTACTGTTT 59.288 36.000 2.46 0.00 0.00 2.83
3554 7542 1.302511 CTGTTTGGGGTCGAGGTGG 60.303 63.158 0.00 0.00 0.00 4.61
3599 7594 0.164217 GCAACGGACGAATAACGCAA 59.836 50.000 0.00 0.00 46.94 4.85
3603 7598 1.068055 ACGGACGAATAACGCAAGACT 60.068 47.619 0.00 0.00 46.94 3.24
3604 7599 2.162208 ACGGACGAATAACGCAAGACTA 59.838 45.455 0.00 0.00 46.94 2.59
3625 7620 2.332063 AAATGGAAGATCGCCGTCAT 57.668 45.000 3.30 0.00 0.00 3.06
3626 7621 1.586422 AATGGAAGATCGCCGTCATG 58.414 50.000 3.30 0.00 0.00 3.07
3686 7681 9.830975 ACATATGCACAGTGATTAATTAGTGTA 57.169 29.630 17.55 10.59 30.00 2.90
3688 7683 7.792374 ATGCACAGTGATTAATTAGTGTAGG 57.208 36.000 17.55 9.73 30.00 3.18
3690 7685 5.276868 GCACAGTGATTAATTAGTGTAGGCG 60.277 44.000 17.55 8.87 30.00 5.52
3692 7687 5.050490 CAGTGATTAATTAGTGTAGGCGCT 58.950 41.667 7.64 0.00 39.11 5.92
3694 7689 6.037172 CAGTGATTAATTAGTGTAGGCGCTTT 59.963 38.462 7.64 0.00 36.72 3.51
3695 7690 6.037172 AGTGATTAATTAGTGTAGGCGCTTTG 59.963 38.462 7.64 0.00 36.72 2.77
3696 7691 5.878116 TGATTAATTAGTGTAGGCGCTTTGT 59.122 36.000 7.64 0.00 36.72 2.83
3697 7692 6.373216 TGATTAATTAGTGTAGGCGCTTTGTT 59.627 34.615 7.64 0.00 36.72 2.83
3698 7693 6.563222 TTAATTAGTGTAGGCGCTTTGTTT 57.437 33.333 7.64 0.00 36.72 2.83
3700 7695 4.904253 TTAGTGTAGGCGCTTTGTTTTT 57.096 36.364 7.64 0.00 36.72 1.94
3701 7696 3.078594 AGTGTAGGCGCTTTGTTTTTG 57.921 42.857 7.64 0.00 29.98 2.44
3703 7698 1.751924 TGTAGGCGCTTTGTTTTTGGT 59.248 42.857 7.64 0.00 0.00 3.67
3961 9199 1.444212 CCTCCAATGCAAAACCGCG 60.444 57.895 0.00 0.00 33.35 6.46
4094 9332 4.440880 CTCTTCTCATCTTCCACATCCAC 58.559 47.826 0.00 0.00 0.00 4.02
4182 9423 1.064296 CCGACTTCGTGGAGATCGG 59.936 63.158 0.00 0.00 45.61 4.18
4275 9516 2.750166 TCCGTTCTTGCTTTCACAACAA 59.250 40.909 0.00 0.00 0.00 2.83
4327 9568 3.401033 TTGAAGCAAATGACGAGGAGA 57.599 42.857 0.00 0.00 0.00 3.71
4457 9703 1.612146 TGGGCGTTCAGATCCAGGA 60.612 57.895 0.00 0.00 0.00 3.86
4487 9733 2.100197 CACTAGATCAGGAACCCACGA 58.900 52.381 0.00 0.00 0.00 4.35
4674 9920 6.753744 GGGTAAGATTGCTGAATTTCATTCAC 59.246 38.462 0.00 0.00 43.84 3.18
4904 10234 6.212235 TGTGTTCAAATTACGTGATGCAATT 58.788 32.000 0.00 0.00 0.00 2.32
4967 10297 4.621886 GCCTCTAGAAAAGTTCAGTACACG 59.378 45.833 0.00 0.00 0.00 4.49
5062 10392 8.408601 GGCATTGAAATATTTCAGTACTGACAT 58.591 33.333 25.13 24.50 46.68 3.06
5115 10449 0.675633 AGTACACACGGGTACACACC 59.324 55.000 11.94 0.00 44.76 4.16
5463 10810 1.930503 TGCTGTTTCAGTACACACACG 59.069 47.619 0.00 0.00 33.43 4.49
5464 10811 1.931172 GCTGTTTCAGTACACACACGT 59.069 47.619 0.00 0.00 33.43 4.49
5466 10813 3.181774 GCTGTTTCAGTACACACACGTAG 59.818 47.826 0.00 0.00 33.43 3.51
5501 10851 7.561021 TTTCAGTAATGCACTTTCAGTACAA 57.439 32.000 0.00 0.00 39.26 2.41
5959 11313 1.818060 TGCTGCGCCTCACAATAAAAT 59.182 42.857 4.18 0.00 0.00 1.82
6377 11733 0.589708 GAAAAACCCGTCCTTCCACG 59.410 55.000 0.00 0.00 39.61 4.94
6436 11792 1.617755 ATCGACAACGTGCGCTTCTG 61.618 55.000 9.73 3.24 40.69 3.02
6528 11885 4.729868 ACCAAACTAGTCATGCTTCCTTT 58.270 39.130 0.00 0.00 0.00 3.11
6555 11913 8.298854 TCATGTTGATACAAAGAAGTGGAAATG 58.701 33.333 0.00 0.00 37.91 2.32
6668 12033 3.305539 GCAAGAGATCATGTGTGCCAAAA 60.306 43.478 0.00 0.00 0.00 2.44
6671 12036 5.068234 AGAGATCATGTGTGCCAAAATTG 57.932 39.130 0.00 0.00 0.00 2.32
6695 12338 2.225727 GTGATTTGGAGGTGGTCGAAAC 59.774 50.000 0.00 0.00 35.89 2.78
6785 12429 1.256812 CCACCTCCAAATCACCCAAC 58.743 55.000 0.00 0.00 0.00 3.77
6786 12430 1.203050 CCACCTCCAAATCACCCAACT 60.203 52.381 0.00 0.00 0.00 3.16
6787 12431 2.041081 CCACCTCCAAATCACCCAACTA 59.959 50.000 0.00 0.00 0.00 2.24
6788 12432 3.499563 CCACCTCCAAATCACCCAACTAA 60.500 47.826 0.00 0.00 0.00 2.24
6789 12433 4.344104 CACCTCCAAATCACCCAACTAAT 58.656 43.478 0.00 0.00 0.00 1.73
6790 12434 5.505780 CACCTCCAAATCACCCAACTAATA 58.494 41.667 0.00 0.00 0.00 0.98
6791 12435 5.357032 CACCTCCAAATCACCCAACTAATAC 59.643 44.000 0.00 0.00 0.00 1.89
6792 12436 5.253096 ACCTCCAAATCACCCAACTAATACT 59.747 40.000 0.00 0.00 0.00 2.12
6793 12437 5.590259 CCTCCAAATCACCCAACTAATACTG 59.410 44.000 0.00 0.00 0.00 2.74
6794 12438 6.134535 TCCAAATCACCCAACTAATACTGT 57.865 37.500 0.00 0.00 0.00 3.55
6795 12439 6.548321 TCCAAATCACCCAACTAATACTGTT 58.452 36.000 0.00 0.00 0.00 3.16
6796 12440 7.691213 TCCAAATCACCCAACTAATACTGTTA 58.309 34.615 0.00 0.00 0.00 2.41
6797 12441 7.608761 TCCAAATCACCCAACTAATACTGTTAC 59.391 37.037 0.00 0.00 0.00 2.50
6798 12442 7.392113 CCAAATCACCCAACTAATACTGTTACA 59.608 37.037 0.00 0.00 0.00 2.41
6799 12443 8.788806 CAAATCACCCAACTAATACTGTTACAA 58.211 33.333 0.00 0.00 0.00 2.41
6800 12444 8.561738 AATCACCCAACTAATACTGTTACAAG 57.438 34.615 0.00 0.00 0.00 3.16
6801 12445 6.469410 TCACCCAACTAATACTGTTACAAGG 58.531 40.000 0.00 0.00 0.00 3.61
6802 12446 5.646360 CACCCAACTAATACTGTTACAAGGG 59.354 44.000 0.00 0.00 34.79 3.95
6803 12447 5.311385 ACCCAACTAATACTGTTACAAGGGT 59.689 40.000 0.00 0.00 36.16 4.34
6804 12448 5.646360 CCCAACTAATACTGTTACAAGGGTG 59.354 44.000 0.00 0.00 0.00 4.61
6805 12449 6.235664 CCAACTAATACTGTTACAAGGGTGT 58.764 40.000 0.00 0.00 42.09 4.16
6806 12450 6.148811 CCAACTAATACTGTTACAAGGGTGTG 59.851 42.308 0.00 0.00 38.82 3.82
6807 12451 5.801380 ACTAATACTGTTACAAGGGTGTGG 58.199 41.667 0.00 0.00 38.82 4.17
6808 12452 4.986054 AATACTGTTACAAGGGTGTGGA 57.014 40.909 0.00 0.00 38.82 4.02
6809 12453 2.632987 ACTGTTACAAGGGTGTGGAC 57.367 50.000 0.00 0.00 38.82 4.02
6810 12454 1.841277 ACTGTTACAAGGGTGTGGACA 59.159 47.619 0.00 0.00 38.82 4.02
6811 12455 2.240160 ACTGTTACAAGGGTGTGGACAA 59.760 45.455 0.00 0.00 38.82 3.18
6812 12456 2.616842 CTGTTACAAGGGTGTGGACAAC 59.383 50.000 0.00 0.00 38.82 3.32
6825 12469 3.788227 TGGACAACCAAATAGCTGAGT 57.212 42.857 0.00 0.00 43.91 3.41
6826 12470 3.674997 TGGACAACCAAATAGCTGAGTC 58.325 45.455 0.00 0.00 43.91 3.36
6827 12471 3.072330 TGGACAACCAAATAGCTGAGTCA 59.928 43.478 0.00 0.00 43.91 3.41
6828 12472 4.263462 TGGACAACCAAATAGCTGAGTCAT 60.263 41.667 0.00 0.00 43.91 3.06
6829 12473 5.045942 TGGACAACCAAATAGCTGAGTCATA 60.046 40.000 0.00 0.00 43.91 2.15
6830 12474 5.294552 GGACAACCAAATAGCTGAGTCATAC 59.705 44.000 0.00 0.00 35.97 2.39
6831 12475 5.804639 ACAACCAAATAGCTGAGTCATACA 58.195 37.500 0.00 0.00 0.00 2.29
6832 12476 6.418101 ACAACCAAATAGCTGAGTCATACAT 58.582 36.000 0.00 0.00 0.00 2.29
6833 12477 6.886459 ACAACCAAATAGCTGAGTCATACATT 59.114 34.615 0.00 0.00 0.00 2.71
6834 12478 8.046708 ACAACCAAATAGCTGAGTCATACATTA 58.953 33.333 0.00 0.00 0.00 1.90
6835 12479 9.060347 CAACCAAATAGCTGAGTCATACATTAT 57.940 33.333 0.00 0.00 0.00 1.28
6836 12480 8.613060 ACCAAATAGCTGAGTCATACATTATG 57.387 34.615 0.00 0.00 37.52 1.90
6837 12481 8.432013 ACCAAATAGCTGAGTCATACATTATGA 58.568 33.333 0.00 0.00 42.56 2.15
6838 12482 8.933807 CCAAATAGCTGAGTCATACATTATGAG 58.066 37.037 0.00 0.00 45.16 2.90
6839 12483 8.933807 CAAATAGCTGAGTCATACATTATGAGG 58.066 37.037 0.00 0.00 45.16 3.86
6840 12484 8.427902 AATAGCTGAGTCATACATTATGAGGA 57.572 34.615 0.00 0.00 45.16 3.71
6841 12485 6.737720 AGCTGAGTCATACATTATGAGGAA 57.262 37.500 0.00 0.00 45.16 3.36
6842 12486 6.757237 AGCTGAGTCATACATTATGAGGAAG 58.243 40.000 0.00 0.00 45.16 3.46
6843 12487 6.326064 AGCTGAGTCATACATTATGAGGAAGT 59.674 38.462 0.00 0.00 45.16 3.01
6844 12488 6.644592 GCTGAGTCATACATTATGAGGAAGTC 59.355 42.308 0.00 0.00 45.16 3.01
6845 12489 7.660030 TGAGTCATACATTATGAGGAAGTCA 57.340 36.000 0.00 0.00 45.16 3.41
6846 12490 7.492524 TGAGTCATACATTATGAGGAAGTCAC 58.507 38.462 0.00 0.00 45.16 3.67
6847 12491 7.343057 TGAGTCATACATTATGAGGAAGTCACT 59.657 37.037 0.00 0.00 45.16 3.41
6848 12492 8.768501 AGTCATACATTATGAGGAAGTCACTA 57.231 34.615 0.00 0.00 45.16 2.74
6849 12493 9.201989 AGTCATACATTATGAGGAAGTCACTAA 57.798 33.333 0.00 0.00 45.16 2.24
6850 12494 9.250624 GTCATACATTATGAGGAAGTCACTAAC 57.749 37.037 0.00 0.00 45.16 2.34
6851 12495 9.201989 TCATACATTATGAGGAAGTCACTAACT 57.798 33.333 0.00 0.00 40.09 2.24
6852 12496 9.254133 CATACATTATGAGGAAGTCACTAACTG 57.746 37.037 0.00 0.00 38.28 3.16
6853 12497 7.482169 ACATTATGAGGAAGTCACTAACTGA 57.518 36.000 0.00 0.00 38.28 3.41
6869 12513 9.778741 TCACTAACTGACAGAATGAAGTATTTT 57.221 29.630 10.08 0.00 39.69 1.82
6884 12528 9.793259 ATGAAGTATTTTAGAGAAAAGGTCACA 57.207 29.630 0.00 0.00 37.94 3.58
6885 12529 9.052759 TGAAGTATTTTAGAGAAAAGGTCACAC 57.947 33.333 0.00 0.00 37.94 3.82
6886 12530 7.653767 AGTATTTTAGAGAAAAGGTCACACG 57.346 36.000 0.00 0.00 37.94 4.49
6887 12531 7.439381 AGTATTTTAGAGAAAAGGTCACACGA 58.561 34.615 0.00 0.00 37.94 4.35
6888 12532 8.095169 AGTATTTTAGAGAAAAGGTCACACGAT 58.905 33.333 0.00 0.00 37.94 3.73
6889 12533 9.362539 GTATTTTAGAGAAAAGGTCACACGATA 57.637 33.333 0.00 0.00 37.94 2.92
6890 12534 7.647907 TTTTAGAGAAAAGGTCACACGATAC 57.352 36.000 0.00 0.00 30.89 2.24
6891 12535 6.585695 TTAGAGAAAAGGTCACACGATACT 57.414 37.500 0.00 0.00 0.00 2.12
6892 12536 7.692460 TTAGAGAAAAGGTCACACGATACTA 57.308 36.000 0.00 0.00 0.00 1.82
6893 12537 6.197364 AGAGAAAAGGTCACACGATACTAG 57.803 41.667 0.00 0.00 0.00 2.57
6894 12538 5.944599 AGAGAAAAGGTCACACGATACTAGA 59.055 40.000 0.00 0.00 0.00 2.43
6895 12539 5.952033 AGAAAAGGTCACACGATACTAGAC 58.048 41.667 0.00 0.00 0.00 2.59
6896 12540 5.475909 AGAAAAGGTCACACGATACTAGACA 59.524 40.000 0.00 0.00 0.00 3.41
6897 12541 5.916661 AAAGGTCACACGATACTAGACAT 57.083 39.130 0.00 0.00 0.00 3.06
6898 12542 7.338703 AGAAAAGGTCACACGATACTAGACATA 59.661 37.037 0.00 0.00 0.00 2.29
6899 12543 6.621316 AAGGTCACACGATACTAGACATAG 57.379 41.667 0.00 0.00 34.96 2.23
6900 12544 5.926663 AGGTCACACGATACTAGACATAGA 58.073 41.667 0.00 0.00 32.93 1.98
6901 12545 5.759273 AGGTCACACGATACTAGACATAGAC 59.241 44.000 0.00 0.00 32.93 2.59
6902 12546 5.333187 GGTCACACGATACTAGACATAGACG 60.333 48.000 0.00 0.00 32.93 4.18
6903 12547 5.461407 GTCACACGATACTAGACATAGACGA 59.539 44.000 0.00 0.00 32.93 4.20
6904 12548 5.461407 TCACACGATACTAGACATAGACGAC 59.539 44.000 0.00 0.00 32.93 4.34
6905 12549 5.233689 CACACGATACTAGACATAGACGACA 59.766 44.000 0.00 0.00 32.93 4.35
6906 12550 5.814188 ACACGATACTAGACATAGACGACAA 59.186 40.000 0.00 0.00 32.93 3.18
6907 12551 6.482641 ACACGATACTAGACATAGACGACAAT 59.517 38.462 0.00 0.00 32.93 2.71
6908 12552 6.792726 CACGATACTAGACATAGACGACAATG 59.207 42.308 0.00 0.00 32.93 2.82
6909 12553 5.790988 CGATACTAGACATAGACGACAATGC 59.209 44.000 0.00 0.00 32.93 3.56
6910 12554 4.983671 ACTAGACATAGACGACAATGCA 57.016 40.909 0.00 0.00 32.93 3.96
6911 12555 4.673441 ACTAGACATAGACGACAATGCAC 58.327 43.478 0.00 0.00 32.93 4.57
6912 12556 3.592898 AGACATAGACGACAATGCACA 57.407 42.857 0.00 0.00 0.00 4.57
6913 12557 3.254060 AGACATAGACGACAATGCACAC 58.746 45.455 0.00 0.00 0.00 3.82
6914 12558 1.992667 ACATAGACGACAATGCACACG 59.007 47.619 0.00 0.00 0.00 4.49
6915 12559 0.999406 ATAGACGACAATGCACACGC 59.001 50.000 0.00 0.00 39.24 5.34
6916 12560 1.011968 TAGACGACAATGCACACGCC 61.012 55.000 0.00 0.00 37.32 5.68
6917 12561 2.590291 ACGACAATGCACACGCCA 60.590 55.556 0.00 0.00 37.32 5.69
6918 12562 2.111932 GACGACAATGCACACGCCAA 62.112 55.000 0.00 0.00 37.32 4.52
6919 12563 1.725625 CGACAATGCACACGCCAAC 60.726 57.895 0.00 0.00 37.32 3.77
6920 12564 1.358402 GACAATGCACACGCCAACA 59.642 52.632 0.00 0.00 37.32 3.33
6921 12565 0.039256 GACAATGCACACGCCAACAT 60.039 50.000 0.00 0.00 37.32 2.71
6922 12566 0.039256 ACAATGCACACGCCAACATC 60.039 50.000 0.00 0.00 37.32 3.06
6923 12567 0.039346 CAATGCACACGCCAACATCA 60.039 50.000 0.00 0.00 37.32 3.07
6924 12568 0.241749 AATGCACACGCCAACATCAG 59.758 50.000 0.00 0.00 37.32 2.90
6925 12569 1.588824 ATGCACACGCCAACATCAGG 61.589 55.000 0.00 0.00 37.32 3.86
6926 12570 2.260869 GCACACGCCAACATCAGGT 61.261 57.895 0.00 0.00 0.00 4.00
6927 12571 1.795170 GCACACGCCAACATCAGGTT 61.795 55.000 0.00 0.00 41.47 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 0.101759 TATGTTAGCGTGTCGGCTCC 59.898 55.000 0.00 0.00 43.54 4.70
115 116 3.421844 GACTACAATCAAACCTGCCCTT 58.578 45.455 0.00 0.00 0.00 3.95
124 125 3.126171 CGGATTTGGCGACTACAATCAAA 59.874 43.478 9.66 0.00 0.00 2.69
163 164 4.678509 TCACTAAATCATCCGCAAACAC 57.321 40.909 0.00 0.00 0.00 3.32
170 171 4.336433 AGCCAACATTCACTAAATCATCCG 59.664 41.667 0.00 0.00 0.00 4.18
176 178 6.223120 GGAAAACAGCCAACATTCACTAAAT 58.777 36.000 0.00 0.00 0.00 1.40
199 202 2.805295 GCGGACAAAAAGGGAAAAAGGG 60.805 50.000 0.00 0.00 0.00 3.95
202 207 1.202428 CGGCGGACAAAAAGGGAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
203 208 0.386113 CGGCGGACAAAAAGGGAAAA 59.614 50.000 0.00 0.00 0.00 2.29
204 209 0.752376 ACGGCGGACAAAAAGGGAAA 60.752 50.000 13.24 0.00 0.00 3.13
205 210 0.108207 TACGGCGGACAAAAAGGGAA 59.892 50.000 13.24 0.00 0.00 3.97
206 211 0.108207 TTACGGCGGACAAAAAGGGA 59.892 50.000 13.24 0.00 0.00 4.20
207 212 0.519961 CTTACGGCGGACAAAAAGGG 59.480 55.000 13.24 0.00 0.00 3.95
208 213 0.109919 GCTTACGGCGGACAAAAAGG 60.110 55.000 13.24 0.00 0.00 3.11
209 214 3.378013 GCTTACGGCGGACAAAAAG 57.622 52.632 13.24 0.00 0.00 2.27
292 298 6.841443 TCCGTTTAAAAATACTTGTCGTGA 57.159 33.333 0.00 0.00 0.00 4.35
295 301 6.890558 TCCTTCCGTTTAAAAATACTTGTCG 58.109 36.000 0.00 0.00 0.00 4.35
300 306 8.377799 TCCTTACTCCTTCCGTTTAAAAATACT 58.622 33.333 0.00 0.00 0.00 2.12
309 315 5.008331 GGAAAATCCTTACTCCTTCCGTTT 58.992 41.667 0.00 0.00 32.53 3.60
316 322 7.510675 TCATGTTAGGAAAATCCTTACTCCT 57.489 36.000 14.51 2.26 46.91 3.69
355 372 5.551760 TCTTTTTCGAGGCATTTCAGATC 57.448 39.130 0.00 0.00 0.00 2.75
416 434 6.364435 AGTTTACTTCTTTAGTTACTTCCGCG 59.636 38.462 0.00 0.00 38.33 6.46
483 501 3.799917 GCATGCAAGTAACTTGGCACTTT 60.800 43.478 14.21 0.00 41.31 2.66
489 507 4.177165 TGAATGCATGCAAGTAACTTGG 57.823 40.909 26.68 0.00 41.31 3.61
494 2137 5.968254 ACATGATTGAATGCATGCAAGTAA 58.032 33.333 26.68 18.89 44.30 2.24
497 2140 5.794687 AAACATGATTGAATGCATGCAAG 57.205 34.783 26.68 13.50 44.30 4.01
499 2142 4.632251 GGAAAACATGATTGAATGCATGCA 59.368 37.500 25.04 25.04 44.30 3.96
500 2143 4.034742 GGGAAAACATGATTGAATGCATGC 59.965 41.667 11.82 11.82 44.30 4.06
508 2151 7.506938 AGAAGAAAAGAGGGAAAACATGATTGA 59.493 33.333 0.00 0.00 0.00 2.57
577 2248 3.386726 ACCGGTATATACACAGCACATGT 59.613 43.478 4.49 0.00 45.43 3.21
638 2315 9.614792 GGTCGGGCTTAATAATAAAGATGATAT 57.385 33.333 0.00 0.00 0.00 1.63
653 2330 3.393106 GGGACCGGTCGGGCTTAA 61.393 66.667 27.68 0.00 44.51 1.85
654 2331 4.700448 TGGGACCGGTCGGGCTTA 62.700 66.667 27.68 7.65 44.51 3.09
733 2418 2.158475 ACTGATGCAGGACTTTGGGAAA 60.158 45.455 0.00 0.00 35.51 3.13
747 2432 3.951037 TGAGAGAGAGACCTTACTGATGC 59.049 47.826 0.00 0.00 0.00 3.91
754 2441 3.054287 ACGATGGTGAGAGAGAGACCTTA 60.054 47.826 0.00 0.00 0.00 2.69
788 2475 9.684448 CTAGTTGATGATGTCGACAAACTATAT 57.316 33.333 27.43 15.50 42.74 0.86
789 2476 7.648112 GCTAGTTGATGATGTCGACAAACTATA 59.352 37.037 27.43 16.19 42.74 1.31
790 2477 6.477033 GCTAGTTGATGATGTCGACAAACTAT 59.523 38.462 27.43 18.20 42.74 2.12
791 2478 5.805486 GCTAGTTGATGATGTCGACAAACTA 59.195 40.000 26.35 26.35 42.74 2.24
796 2483 2.495669 TGGCTAGTTGATGATGTCGACA 59.504 45.455 22.48 22.48 42.74 4.35
852 2544 1.000145 GTAACCGAAGCAGCTACAGC 59.000 55.000 0.00 0.00 42.49 4.40
853 2545 1.641577 GGTAACCGAAGCAGCTACAG 58.358 55.000 0.00 0.00 0.00 2.74
854 2546 3.826637 GGTAACCGAAGCAGCTACA 57.173 52.632 0.00 0.00 0.00 2.74
900 2595 4.785453 GACAGGCGGCTTGGAGGG 62.785 72.222 16.79 0.00 0.00 4.30
1007 2707 1.297364 GGCTTAGTGGCAACCCGTA 59.703 57.895 0.00 0.00 41.37 4.02
1142 2850 2.429058 CTGCTATCCATGGCGGCT 59.571 61.111 11.43 0.00 37.04 5.52
1254 2967 1.019673 CGAAACCGATCGAGGTAGGA 58.980 55.000 18.66 0.00 45.21 2.94
1279 2992 3.127203 GCTAGATGGATATCTGTACGCGT 59.873 47.826 19.17 19.17 43.41 6.01
1284 2997 7.272144 TCTGGTAGCTAGATGGATATCTGTA 57.728 40.000 2.05 0.00 43.41 2.74
1308 3021 3.508793 CAGCCAACAAAGAGAACCATCAT 59.491 43.478 0.00 0.00 0.00 2.45
1315 3028 1.405105 GCACACAGCCAACAAAGAGAA 59.595 47.619 0.00 0.00 37.23 2.87
1324 3037 1.898094 AAGCGATGCACACAGCCAA 60.898 52.632 0.00 0.00 44.83 4.52
1389 3102 1.207089 TCAAAGGATCGCCGTGAGATT 59.793 47.619 0.00 0.00 39.96 2.40
1414 3127 5.464030 TCAACTAGTAGAACCGAAGCTTT 57.536 39.130 3.59 0.00 0.00 3.51
1415 3128 5.662674 ATCAACTAGTAGAACCGAAGCTT 57.337 39.130 0.00 0.00 0.00 3.74
1435 3187 9.896263 GGCTAGTAACTGTCTATGTAACTAATC 57.104 37.037 0.00 0.00 0.00 1.75
1441 3193 6.096423 CCAGTGGCTAGTAACTGTCTATGTAA 59.904 42.308 19.34 0.00 41.85 2.41
1452 3205 4.589374 ACAGATATCCCAGTGGCTAGTAAC 59.411 45.833 2.61 0.00 0.00 2.50
1550 3306 1.059098 TGAGGTGGTGCTGAATCTGT 58.941 50.000 0.00 0.00 0.00 3.41
1674 3434 2.202987 CTGGCTCGTCCTCCATGC 60.203 66.667 0.00 0.00 35.26 4.06
1692 3452 2.954868 CAGGGACGATGTACGCGC 60.955 66.667 5.73 0.00 46.94 6.86
1693 3453 2.954868 GCAGGGACGATGTACGCG 60.955 66.667 3.53 3.53 46.94 6.01
1742 3517 1.227292 GCGAGGGGAGGAAATCGAC 60.227 63.158 0.00 0.00 37.35 4.20
1885 3663 3.942601 GAGGAGACCTCGGGGAAG 58.057 66.667 9.33 0.00 41.08 3.46
1907 3685 4.814294 GAGCACCACCGGCGGTAG 62.814 72.222 33.65 27.97 37.07 3.18
2131 5404 0.675837 GCTGGAAGTGATGCTGCTGA 60.676 55.000 0.00 0.00 40.44 4.26
2325 6085 3.887716 AGACAAATGATCATTAGCTGGCC 59.112 43.478 21.00 11.67 0.00 5.36
2326 6086 4.820716 AGAGACAAATGATCATTAGCTGGC 59.179 41.667 21.00 17.26 0.00 4.85
2327 6087 5.177142 CGAGAGACAAATGATCATTAGCTGG 59.823 44.000 21.00 10.85 0.00 4.85
2428 6250 1.546476 GCCTTGTTCTTCTCCTCGAGA 59.454 52.381 15.71 0.00 36.86 4.04
2569 6405 0.878523 TCTTCACCGTGCAAACCTCG 60.879 55.000 0.00 0.00 0.00 4.63
2879 6739 5.195940 ACCGGATTGTACTACTTGCTAGTA 58.804 41.667 9.46 7.79 36.95 1.82
2880 6740 4.021916 ACCGGATTGTACTACTTGCTAGT 58.978 43.478 9.46 6.00 39.24 2.57
2900 6844 3.190535 AGGCAACACGTGATCAAATTACC 59.809 43.478 25.01 8.99 41.41 2.85
2920 6864 3.181467 TGGCCAACTTGTTGAAATGAAGG 60.181 43.478 0.61 0.00 0.00 3.46
2954 6903 3.818121 TTTCGGCCGGAGTGTGTGG 62.818 63.158 27.83 0.00 0.00 4.17
3003 6954 7.104290 ACCAAAAGGTTAGCTTAGCTTACTAG 58.896 38.462 20.33 9.23 40.44 2.57
3004 6955 7.012661 ACCAAAAGGTTAGCTTAGCTTACTA 57.987 36.000 20.33 0.00 40.44 1.82
3006 6957 6.315642 CCTACCAAAAGGTTAGCTTAGCTTAC 59.684 42.308 16.69 13.84 37.45 2.34
3007 6958 6.412214 CCTACCAAAAGGTTAGCTTAGCTTA 58.588 40.000 16.69 0.00 34.96 3.09
3008 6959 5.254115 CCTACCAAAAGGTTAGCTTAGCTT 58.746 41.667 13.44 11.18 37.45 3.74
3009 6960 4.844884 CCTACCAAAAGGTTAGCTTAGCT 58.155 43.478 12.67 12.67 35.85 3.32
3020 6971 5.221581 ACACACACTACTACCTACCAAAAGG 60.222 44.000 0.00 0.00 42.82 3.11
3022 6973 5.129155 ACACACACACTACTACCTACCAAAA 59.871 40.000 0.00 0.00 0.00 2.44
3037 6988 2.032680 AACCTGGTACACACACACAC 57.967 50.000 0.00 0.00 0.00 3.82
3038 6989 2.158928 GGTAACCTGGTACACACACACA 60.159 50.000 0.00 0.00 0.00 3.72
3039 6990 2.103601 AGGTAACCTGGTACACACACAC 59.896 50.000 0.00 0.00 29.57 3.82
3040 6991 2.366266 GAGGTAACCTGGTACACACACA 59.634 50.000 0.00 0.00 31.76 3.72
3154 7119 5.600908 TTAAAAAGAGTATGTGACGCCAC 57.399 39.130 0.00 0.00 43.46 5.01
3214 7184 3.767230 CTGACTGCAACGACCGCG 61.767 66.667 0.00 0.00 44.79 6.46
3336 7306 1.013596 CTTAATCATTCGGCGTGCCA 58.986 50.000 12.06 0.00 35.37 4.92
3360 7330 3.611728 TCTCCTGAGAGAGCAGCAT 57.388 52.632 0.00 0.00 44.42 3.79
3369 7339 3.760035 GCCGGCGTTCTCCTGAGA 61.760 66.667 12.58 0.00 35.27 3.27
3370 7340 4.821589 GGCCGGCGTTCTCCTGAG 62.822 72.222 22.54 0.00 0.00 3.35
3387 7357 2.501222 CACGACGAACCGAGACCG 60.501 66.667 0.00 0.00 0.00 4.79
3388 7358 2.804090 GCACGACGAACCGAGACC 60.804 66.667 0.00 0.00 0.00 3.85
3389 7359 1.796749 GAGCACGACGAACCGAGAC 60.797 63.158 0.00 0.00 0.00 3.36
3390 7360 1.512996 AAGAGCACGACGAACCGAGA 61.513 55.000 0.00 0.00 0.00 4.04
3391 7361 1.066114 GAAGAGCACGACGAACCGAG 61.066 60.000 0.00 0.00 0.00 4.63
3396 7366 0.241213 CTCCTGAAGAGCACGACGAA 59.759 55.000 0.00 0.00 35.31 3.85
3408 7378 3.319198 GGCGGTGGGTCTCCTGAA 61.319 66.667 0.00 0.00 0.00 3.02
3541 7529 3.636231 CTTGCCACCTCGACCCCA 61.636 66.667 0.00 0.00 0.00 4.96
3554 7542 1.230324 GTCCTGTCAGGTTGTCTTGC 58.770 55.000 18.65 0.00 36.53 4.01
3599 7594 4.281182 ACGGCGATCTTCCATTTATAGTCT 59.719 41.667 16.62 0.00 0.00 3.24
3603 7598 4.594123 TGACGGCGATCTTCCATTTATA 57.406 40.909 16.62 0.00 0.00 0.98
3604 7599 3.469008 TGACGGCGATCTTCCATTTAT 57.531 42.857 16.62 0.00 0.00 1.40
3625 7620 0.530870 TCGATTGCACGGTCAACACA 60.531 50.000 0.00 0.00 0.00 3.72
3626 7621 0.796312 ATCGATTGCACGGTCAACAC 59.204 50.000 0.00 0.00 0.00 3.32
3686 7681 1.339929 CCTACCAAAAACAAAGCGCCT 59.660 47.619 2.29 0.00 0.00 5.52
3688 7683 1.338655 TCCCTACCAAAAACAAAGCGC 59.661 47.619 0.00 0.00 0.00 5.92
3690 7685 3.005472 GTCCTCCCTACCAAAAACAAAGC 59.995 47.826 0.00 0.00 0.00 3.51
3692 7687 4.211920 CAGTCCTCCCTACCAAAAACAAA 58.788 43.478 0.00 0.00 0.00 2.83
3694 7689 2.781174 ACAGTCCTCCCTACCAAAAACA 59.219 45.455 0.00 0.00 0.00 2.83
3695 7690 3.146847 CACAGTCCTCCCTACCAAAAAC 58.853 50.000 0.00 0.00 0.00 2.43
3696 7691 3.050089 TCACAGTCCTCCCTACCAAAAA 58.950 45.455 0.00 0.00 0.00 1.94
3697 7692 2.696775 TCACAGTCCTCCCTACCAAAA 58.303 47.619 0.00 0.00 0.00 2.44
3698 7693 2.409064 TCACAGTCCTCCCTACCAAA 57.591 50.000 0.00 0.00 0.00 3.28
3700 7695 2.642171 AATCACAGTCCTCCCTACCA 57.358 50.000 0.00 0.00 0.00 3.25
3701 7696 3.371965 TGTAATCACAGTCCTCCCTACC 58.628 50.000 0.00 0.00 0.00 3.18
3703 7698 3.388024 GCATGTAATCACAGTCCTCCCTA 59.612 47.826 0.00 0.00 38.30 3.53
3829 7844 6.588756 TCGAGTACTTTCATTCGCATACTTTT 59.411 34.615 0.00 0.00 33.36 2.27
3961 9199 1.530183 GCATTGGATGAGAGGGGCC 60.530 63.158 0.00 0.00 0.00 5.80
4106 9347 0.103208 ATCGAGGATCTTGCGTGGAC 59.897 55.000 0.00 0.00 0.00 4.02
4264 9505 6.477688 AGTTCATCTGCAATTTGTTGTGAAAG 59.522 34.615 0.00 0.00 0.00 2.62
4275 9516 2.086869 CCGTCCAGTTCATCTGCAATT 58.913 47.619 0.00 0.00 42.38 2.32
4327 9568 1.688211 GGGAAGCTTTGCCCTCTCT 59.312 57.895 14.66 0.00 41.31 3.10
4457 9703 5.268131 TCCTGATCTAGTGGATGCTCTAT 57.732 43.478 0.00 0.00 34.33 1.98
4613 9859 0.173481 CGCCGTTCAGATGAGGAGAA 59.827 55.000 0.00 0.00 0.00 2.87
4725 9971 3.451178 AGGCTACGGATTCAAGTACACAT 59.549 43.478 0.00 0.00 0.00 3.21
5062 10392 8.773645 CACTACTCAAATATTTCAGTGTGAACA 58.226 33.333 19.93 1.22 35.89 3.18
5115 10449 5.401972 TGCATTGCACTACTGAAATTTTTCG 59.598 36.000 7.38 0.00 35.15 3.46
5361 10700 0.798159 TCGTACGTGCGTGTACTGAT 59.202 50.000 24.94 0.00 42.00 2.90
5959 11313 1.214175 TGTTGAGGTTGAGCAAGGGAA 59.786 47.619 0.00 0.00 0.00 3.97
6377 11733 1.398174 GGTAGGAGGTAAGGGTCCGC 61.398 65.000 0.00 0.00 37.97 5.54
6528 11885 7.815840 TTCCACTTCTTTGTATCAACATGAA 57.184 32.000 0.00 0.00 34.97 2.57
6555 11913 6.036577 ACATGATGTAAATGGACCCAAAAC 57.963 37.500 0.00 0.00 0.00 2.43
6668 12033 2.379907 ACCACCTCCAAATCACCTCAAT 59.620 45.455 0.00 0.00 0.00 2.57
6671 12036 1.676014 CGACCACCTCCAAATCACCTC 60.676 57.143 0.00 0.00 0.00 3.85
6695 12338 1.951130 CTCCGGAATGCGGTGATCG 60.951 63.158 13.90 0.00 42.76 3.69
6785 12429 5.873164 GTCCACACCCTTGTAACAGTATTAG 59.127 44.000 0.00 0.00 33.30 1.73
6786 12430 5.307456 TGTCCACACCCTTGTAACAGTATTA 59.693 40.000 0.00 0.00 33.30 0.98
6787 12431 4.103469 TGTCCACACCCTTGTAACAGTATT 59.897 41.667 0.00 0.00 33.30 1.89
6788 12432 3.649023 TGTCCACACCCTTGTAACAGTAT 59.351 43.478 0.00 0.00 33.30 2.12
6789 12433 3.039743 TGTCCACACCCTTGTAACAGTA 58.960 45.455 0.00 0.00 33.30 2.74
6790 12434 1.841277 TGTCCACACCCTTGTAACAGT 59.159 47.619 0.00 0.00 33.30 3.55
6791 12435 2.616842 GTTGTCCACACCCTTGTAACAG 59.383 50.000 0.00 0.00 34.05 3.16
6792 12436 2.645802 GTTGTCCACACCCTTGTAACA 58.354 47.619 0.00 0.00 33.30 2.41
6793 12437 1.951602 GGTTGTCCACACCCTTGTAAC 59.048 52.381 0.00 0.00 33.30 2.50
6794 12438 1.564818 TGGTTGTCCACACCCTTGTAA 59.435 47.619 0.00 0.00 39.03 2.41
6795 12439 1.214217 TGGTTGTCCACACCCTTGTA 58.786 50.000 0.00 0.00 39.03 2.41
6796 12440 0.333312 TTGGTTGTCCACACCCTTGT 59.667 50.000 0.00 0.00 44.22 3.16
6797 12441 1.479709 TTTGGTTGTCCACACCCTTG 58.520 50.000 0.00 0.00 44.22 3.61
6798 12442 2.470057 ATTTGGTTGTCCACACCCTT 57.530 45.000 0.00 0.00 44.22 3.95
6799 12443 2.817839 GCTATTTGGTTGTCCACACCCT 60.818 50.000 0.00 0.00 44.22 4.34
6800 12444 1.544246 GCTATTTGGTTGTCCACACCC 59.456 52.381 0.00 0.00 44.22 4.61
6801 12445 2.228822 CAGCTATTTGGTTGTCCACACC 59.771 50.000 0.00 0.00 44.22 4.16
6802 12446 3.146066 TCAGCTATTTGGTTGTCCACAC 58.854 45.455 0.00 0.00 44.22 3.82
6803 12447 3.181445 ACTCAGCTATTTGGTTGTCCACA 60.181 43.478 0.00 0.00 44.22 4.17
6804 12448 3.412386 ACTCAGCTATTTGGTTGTCCAC 58.588 45.455 0.00 0.00 44.22 4.02
6805 12449 3.072330 TGACTCAGCTATTTGGTTGTCCA 59.928 43.478 0.00 0.00 42.66 4.02
6806 12450 3.674997 TGACTCAGCTATTTGGTTGTCC 58.325 45.455 0.00 0.00 0.00 4.02
6807 12451 5.874810 TGTATGACTCAGCTATTTGGTTGTC 59.125 40.000 0.00 0.00 0.00 3.18
6808 12452 5.804639 TGTATGACTCAGCTATTTGGTTGT 58.195 37.500 0.00 0.00 0.00 3.32
6809 12453 6.932356 ATGTATGACTCAGCTATTTGGTTG 57.068 37.500 0.00 0.00 0.00 3.77
6810 12454 9.060347 CATAATGTATGACTCAGCTATTTGGTT 57.940 33.333 0.00 0.00 38.45 3.67
6811 12455 8.432013 TCATAATGTATGACTCAGCTATTTGGT 58.568 33.333 0.00 0.00 40.09 3.67
6812 12456 8.837788 TCATAATGTATGACTCAGCTATTTGG 57.162 34.615 0.00 0.00 40.09 3.28
6813 12457 8.933807 CCTCATAATGTATGACTCAGCTATTTG 58.066 37.037 0.00 0.00 40.09 2.32
6814 12458 8.874156 TCCTCATAATGTATGACTCAGCTATTT 58.126 33.333 0.00 0.00 40.09 1.40
6815 12459 8.427902 TCCTCATAATGTATGACTCAGCTATT 57.572 34.615 0.00 0.00 40.09 1.73
6816 12460 8.427902 TTCCTCATAATGTATGACTCAGCTAT 57.572 34.615 0.00 0.00 40.09 2.97
6817 12461 7.507277 ACTTCCTCATAATGTATGACTCAGCTA 59.493 37.037 0.00 0.00 40.09 3.32
6818 12462 6.326064 ACTTCCTCATAATGTATGACTCAGCT 59.674 38.462 0.00 0.00 40.09 4.24
6819 12463 6.520272 ACTTCCTCATAATGTATGACTCAGC 58.480 40.000 0.00 0.00 40.09 4.26
6820 12464 7.651304 GTGACTTCCTCATAATGTATGACTCAG 59.349 40.741 0.00 0.00 40.09 3.35
6821 12465 7.343057 AGTGACTTCCTCATAATGTATGACTCA 59.657 37.037 0.00 0.00 40.09 3.41
6822 12466 7.721402 AGTGACTTCCTCATAATGTATGACTC 58.279 38.462 0.00 0.00 40.09 3.36
6823 12467 7.667575 AGTGACTTCCTCATAATGTATGACT 57.332 36.000 0.00 0.00 40.09 3.41
6824 12468 9.250624 GTTAGTGACTTCCTCATAATGTATGAC 57.749 37.037 0.00 0.00 40.09 3.06
6825 12469 9.201989 AGTTAGTGACTTCCTCATAATGTATGA 57.798 33.333 0.00 0.00 37.87 2.15
6826 12470 9.254133 CAGTTAGTGACTTCCTCATAATGTATG 57.746 37.037 0.00 0.00 36.10 2.39
6827 12471 9.201989 TCAGTTAGTGACTTCCTCATAATGTAT 57.798 33.333 0.00 0.00 36.10 2.29
6828 12472 8.589701 TCAGTTAGTGACTTCCTCATAATGTA 57.410 34.615 0.00 0.00 36.10 2.29
6829 12473 7.482169 TCAGTTAGTGACTTCCTCATAATGT 57.518 36.000 0.00 0.00 36.10 2.71
6843 12487 9.778741 AAAATACTTCATTCTGTCAGTTAGTGA 57.221 29.630 0.00 0.00 0.00 3.41
6858 12502 9.793259 TGTGACCTTTTCTCTAAAATACTTCAT 57.207 29.630 0.00 0.00 34.18 2.57
6859 12503 9.052759 GTGTGACCTTTTCTCTAAAATACTTCA 57.947 33.333 0.00 0.00 34.18 3.02
6860 12504 8.221766 CGTGTGACCTTTTCTCTAAAATACTTC 58.778 37.037 0.00 0.00 34.18 3.01
6861 12505 7.929785 TCGTGTGACCTTTTCTCTAAAATACTT 59.070 33.333 0.00 0.00 34.18 2.24
6862 12506 7.439381 TCGTGTGACCTTTTCTCTAAAATACT 58.561 34.615 0.00 0.00 34.18 2.12
6863 12507 7.647907 TCGTGTGACCTTTTCTCTAAAATAC 57.352 36.000 0.00 0.00 34.18 1.89
6864 12508 9.362539 GTATCGTGTGACCTTTTCTCTAAAATA 57.637 33.333 0.00 0.00 34.18 1.40
6865 12509 8.095169 AGTATCGTGTGACCTTTTCTCTAAAAT 58.905 33.333 0.00 0.00 34.18 1.82
6866 12510 7.439381 AGTATCGTGTGACCTTTTCTCTAAAA 58.561 34.615 0.00 0.00 33.58 1.52
6867 12511 6.989659 AGTATCGTGTGACCTTTTCTCTAAA 58.010 36.000 0.00 0.00 0.00 1.85
6868 12512 6.585695 AGTATCGTGTGACCTTTTCTCTAA 57.414 37.500 0.00 0.00 0.00 2.10
6869 12513 7.065563 GTCTAGTATCGTGTGACCTTTTCTCTA 59.934 40.741 0.00 0.00 0.00 2.43
6870 12514 5.944599 TCTAGTATCGTGTGACCTTTTCTCT 59.055 40.000 0.00 0.00 0.00 3.10
6871 12515 6.028987 GTCTAGTATCGTGTGACCTTTTCTC 58.971 44.000 0.00 0.00 0.00 2.87
6872 12516 5.475909 TGTCTAGTATCGTGTGACCTTTTCT 59.524 40.000 0.00 0.00 0.00 2.52
6873 12517 5.706916 TGTCTAGTATCGTGTGACCTTTTC 58.293 41.667 0.00 0.00 0.00 2.29
6874 12518 5.717078 TGTCTAGTATCGTGTGACCTTTT 57.283 39.130 0.00 0.00 0.00 2.27
6875 12519 5.916661 ATGTCTAGTATCGTGTGACCTTT 57.083 39.130 0.00 0.00 0.00 3.11
6876 12520 6.260493 GTCTATGTCTAGTATCGTGTGACCTT 59.740 42.308 0.00 0.00 0.00 3.50
6877 12521 5.759273 GTCTATGTCTAGTATCGTGTGACCT 59.241 44.000 0.00 0.00 0.00 3.85
6878 12522 5.333187 CGTCTATGTCTAGTATCGTGTGACC 60.333 48.000 0.00 0.00 0.00 4.02
6879 12523 5.461407 TCGTCTATGTCTAGTATCGTGTGAC 59.539 44.000 0.00 0.00 0.00 3.67
6880 12524 5.461407 GTCGTCTATGTCTAGTATCGTGTGA 59.539 44.000 0.00 0.00 0.00 3.58
6881 12525 5.233689 TGTCGTCTATGTCTAGTATCGTGTG 59.766 44.000 0.00 0.00 0.00 3.82
6882 12526 5.354767 TGTCGTCTATGTCTAGTATCGTGT 58.645 41.667 0.00 0.00 0.00 4.49
6883 12527 5.902051 TGTCGTCTATGTCTAGTATCGTG 57.098 43.478 0.00 0.00 0.00 4.35
6884 12528 6.566187 GCATTGTCGTCTATGTCTAGTATCGT 60.566 42.308 6.06 0.00 0.00 3.73
6885 12529 5.790988 GCATTGTCGTCTATGTCTAGTATCG 59.209 44.000 6.06 0.00 0.00 2.92
6886 12530 6.579292 GTGCATTGTCGTCTATGTCTAGTATC 59.421 42.308 6.06 0.00 0.00 2.24
6887 12531 6.039382 TGTGCATTGTCGTCTATGTCTAGTAT 59.961 38.462 6.06 0.00 0.00 2.12
6888 12532 5.355910 TGTGCATTGTCGTCTATGTCTAGTA 59.644 40.000 6.06 0.00 0.00 1.82
6889 12533 4.157840 TGTGCATTGTCGTCTATGTCTAGT 59.842 41.667 6.06 0.00 0.00 2.57
6890 12534 4.500837 GTGTGCATTGTCGTCTATGTCTAG 59.499 45.833 6.06 0.00 0.00 2.43
6891 12535 4.421058 GTGTGCATTGTCGTCTATGTCTA 58.579 43.478 6.06 0.00 0.00 2.59
6892 12536 3.254060 GTGTGCATTGTCGTCTATGTCT 58.746 45.455 6.06 0.00 0.00 3.41
6893 12537 2.028045 CGTGTGCATTGTCGTCTATGTC 59.972 50.000 6.06 0.60 0.00 3.06
6894 12538 1.992667 CGTGTGCATTGTCGTCTATGT 59.007 47.619 6.06 0.00 0.00 2.29
6895 12539 1.267038 GCGTGTGCATTGTCGTCTATG 60.267 52.381 0.00 0.30 42.15 2.23
6896 12540 0.999406 GCGTGTGCATTGTCGTCTAT 59.001 50.000 0.00 0.00 42.15 1.98
6897 12541 1.011968 GGCGTGTGCATTGTCGTCTA 61.012 55.000 0.00 0.00 45.35 2.59
6898 12542 2.317609 GGCGTGTGCATTGTCGTCT 61.318 57.895 0.00 0.00 45.35 4.18
6899 12543 2.111932 TTGGCGTGTGCATTGTCGTC 62.112 55.000 0.00 0.00 45.35 4.20
6900 12544 2.183504 TTGGCGTGTGCATTGTCGT 61.184 52.632 0.00 0.00 45.35 4.34
6901 12545 1.725625 GTTGGCGTGTGCATTGTCG 60.726 57.895 0.00 0.00 45.35 4.35
6902 12546 0.039256 ATGTTGGCGTGTGCATTGTC 60.039 50.000 0.00 0.00 45.35 3.18
6903 12547 0.039256 GATGTTGGCGTGTGCATTGT 60.039 50.000 0.00 0.00 45.35 2.71
6904 12548 0.039346 TGATGTTGGCGTGTGCATTG 60.039 50.000 0.00 0.00 45.35 2.82
6905 12549 0.241749 CTGATGTTGGCGTGTGCATT 59.758 50.000 0.00 0.00 45.35 3.56
6906 12550 1.588824 CCTGATGTTGGCGTGTGCAT 61.589 55.000 0.00 0.00 45.35 3.96
6907 12551 2.260154 CCTGATGTTGGCGTGTGCA 61.260 57.895 0.00 0.00 45.35 4.57
6908 12552 1.795170 AACCTGATGTTGGCGTGTGC 61.795 55.000 0.00 0.00 35.31 4.57
6909 12553 2.330254 AACCTGATGTTGGCGTGTG 58.670 52.632 0.00 0.00 35.31 3.82
6910 12554 4.898607 AACCTGATGTTGGCGTGT 57.101 50.000 0.00 0.00 35.31 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.