Multiple sequence alignment - TraesCS3D01G106500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G106500 chr3D 100.000 2573 0 0 1 2573 58427402 58429974 0.000000e+00 4752
1 TraesCS3D01G106500 chr3D 91.075 493 42 2 1 492 545700138 545700629 0.000000e+00 665
2 TraesCS3D01G106500 chr3B 96.011 1830 38 10 772 2573 92604479 92606301 0.000000e+00 2942
3 TraesCS3D01G106500 chr3B 90.061 493 48 1 1 492 592687784 592687292 2.790000e-179 638
4 TraesCS3D01G106500 chr3B 94.118 102 5 1 495 596 92604387 92604487 1.230000e-33 154
5 TraesCS3D01G106500 chr3A 96.622 1569 35 2 1023 2573 67383503 67385071 0.000000e+00 2588
6 TraesCS3D01G106500 chr3A 91.353 266 12 4 772 1026 67382805 67383070 1.130000e-93 353
7 TraesCS3D01G106500 chr3A 88.095 168 15 3 594 756 746941360 746941527 7.260000e-46 195
8 TraesCS3D01G106500 chr3A 84.530 181 22 1 597 771 234224426 234224606 9.460000e-40 174
9 TraesCS3D01G106500 chr3A 96.190 105 4 0 492 596 67382709 67382813 3.400000e-39 172
10 TraesCS3D01G106500 chr6D 92.449 490 34 3 4 490 301787465 301786976 0.000000e+00 697
11 TraesCS3D01G106500 chr7D 91.617 501 33 5 1 495 269697571 269697074 0.000000e+00 684
12 TraesCS3D01G106500 chr7D 91.400 500 37 4 1 494 438063493 438062994 0.000000e+00 680
13 TraesCS3D01G106500 chr4D 90.927 496 43 2 1 494 301507288 301506793 0.000000e+00 665
14 TraesCS3D01G106500 chr4D 86.022 186 17 3 596 772 62231405 62231220 9.400000e-45 191
15 TraesCS3D01G106500 chr5A 90.707 495 44 2 1 494 321907971 321907478 0.000000e+00 658
16 TraesCS3D01G106500 chr5A 84.239 184 19 3 600 773 1337771 1337954 1.220000e-38 171
17 TraesCS3D01G106500 chr5A 86.624 157 18 3 603 756 408185480 408185636 1.220000e-38 171
18 TraesCS3D01G106500 chr1D 90.264 493 47 1 1 492 455087320 455087812 0.000000e+00 643
19 TraesCS3D01G106500 chr1A 89.820 501 41 5 1 492 65906515 65907014 3.610000e-178 634
20 TraesCS3D01G106500 chr4A 83.920 199 24 6 587 777 75354796 75354994 1.570000e-42 183
21 TraesCS3D01G106500 chr2D 86.503 163 22 0 594 756 145374412 145374574 2.030000e-41 180
22 TraesCS3D01G106500 chr6A 84.746 177 19 3 603 772 479039860 479040035 1.220000e-38 171
23 TraesCS3D01G106500 chr6A 83.516 182 24 1 596 771 520357114 520357295 5.700000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G106500 chr3D 58427402 58429974 2572 False 4752.000000 4752 100.000000 1 2573 1 chr3D.!!$F1 2572
1 TraesCS3D01G106500 chr3B 92604387 92606301 1914 False 1548.000000 2942 95.064500 495 2573 2 chr3B.!!$F1 2078
2 TraesCS3D01G106500 chr3A 67382709 67385071 2362 False 1037.666667 2588 94.721667 492 2573 3 chr3A.!!$F3 2081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
373 374 0.029834 GTACATATGGGTCGACGCGT 59.97 55.0 27.55 27.55 0.0 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2758 0.768221 TCAGGCCAGGGTTGTCTCTT 60.768 55.0 5.01 0.0 0.0 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.921677 GTCTGTACGATCAAGGGTTTCA 58.078 45.455 0.00 0.00 0.00 2.69
25 26 3.927142 GTCTGTACGATCAAGGGTTTCAG 59.073 47.826 0.00 0.00 0.00 3.02
26 27 3.576982 TCTGTACGATCAAGGGTTTCAGT 59.423 43.478 0.00 0.00 0.00 3.41
27 28 4.039973 TCTGTACGATCAAGGGTTTCAGTT 59.960 41.667 0.00 0.00 0.00 3.16
28 29 4.710324 TGTACGATCAAGGGTTTCAGTTT 58.290 39.130 0.00 0.00 0.00 2.66
29 30 4.753107 TGTACGATCAAGGGTTTCAGTTTC 59.247 41.667 0.00 0.00 0.00 2.78
30 31 3.815809 ACGATCAAGGGTTTCAGTTTCA 58.184 40.909 0.00 0.00 0.00 2.69
31 32 3.815401 ACGATCAAGGGTTTCAGTTTCAG 59.185 43.478 0.00 0.00 0.00 3.02
32 33 3.189287 CGATCAAGGGTTTCAGTTTCAGG 59.811 47.826 0.00 0.00 0.00 3.86
33 34 2.944129 TCAAGGGTTTCAGTTTCAGGG 58.056 47.619 0.00 0.00 0.00 4.45
34 35 2.243736 TCAAGGGTTTCAGTTTCAGGGT 59.756 45.455 0.00 0.00 0.00 4.34
35 36 2.362077 CAAGGGTTTCAGTTTCAGGGTG 59.638 50.000 0.00 0.00 0.00 4.61
36 37 1.850345 AGGGTTTCAGTTTCAGGGTGA 59.150 47.619 0.00 0.00 0.00 4.02
37 38 2.158608 AGGGTTTCAGTTTCAGGGTGAG 60.159 50.000 0.00 0.00 0.00 3.51
38 39 2.158667 GGGTTTCAGTTTCAGGGTGAGA 60.159 50.000 0.00 0.00 0.00 3.27
39 40 3.551846 GGTTTCAGTTTCAGGGTGAGAA 58.448 45.455 0.00 0.00 0.00 2.87
40 41 4.145052 GGTTTCAGTTTCAGGGTGAGAAT 58.855 43.478 0.00 0.00 0.00 2.40
41 42 4.022849 GGTTTCAGTTTCAGGGTGAGAATG 60.023 45.833 0.00 0.00 29.36 2.67
42 43 4.437682 TTCAGTTTCAGGGTGAGAATGT 57.562 40.909 0.00 0.00 30.14 2.71
43 44 4.437682 TCAGTTTCAGGGTGAGAATGTT 57.562 40.909 0.00 0.00 30.14 2.71
44 45 4.136796 TCAGTTTCAGGGTGAGAATGTTG 58.863 43.478 0.00 0.00 30.14 3.33
45 46 3.885297 CAGTTTCAGGGTGAGAATGTTGT 59.115 43.478 0.00 0.00 0.00 3.32
46 47 3.885297 AGTTTCAGGGTGAGAATGTTGTG 59.115 43.478 0.00 0.00 0.00 3.33
47 48 1.896220 TCAGGGTGAGAATGTTGTGC 58.104 50.000 0.00 0.00 0.00 4.57
48 49 0.883833 CAGGGTGAGAATGTTGTGCC 59.116 55.000 0.00 0.00 0.00 5.01
49 50 0.773644 AGGGTGAGAATGTTGTGCCT 59.226 50.000 0.00 0.00 0.00 4.75
50 51 0.883833 GGGTGAGAATGTTGTGCCTG 59.116 55.000 0.00 0.00 0.00 4.85
51 52 1.545428 GGGTGAGAATGTTGTGCCTGA 60.545 52.381 0.00 0.00 0.00 3.86
52 53 1.808945 GGTGAGAATGTTGTGCCTGAG 59.191 52.381 0.00 0.00 0.00 3.35
53 54 1.198637 GTGAGAATGTTGTGCCTGAGC 59.801 52.381 0.00 0.00 40.48 4.26
62 63 3.317109 TGCCTGAGCATGGAGGAG 58.683 61.111 0.00 0.00 46.52 3.69
63 64 2.203181 GCCTGAGCATGGAGGAGC 60.203 66.667 0.00 0.00 39.53 4.70
64 65 2.108566 CCTGAGCATGGAGGAGCG 59.891 66.667 0.00 0.00 35.48 5.03
65 66 2.108566 CTGAGCATGGAGGAGCGG 59.891 66.667 0.00 0.00 35.48 5.52
66 67 4.166888 TGAGCATGGAGGAGCGGC 62.167 66.667 0.00 0.00 35.48 6.53
67 68 4.166888 GAGCATGGAGGAGCGGCA 62.167 66.667 1.45 0.00 35.48 5.69
68 69 3.687321 GAGCATGGAGGAGCGGCAA 62.687 63.158 1.45 0.00 35.48 4.52
69 70 3.512516 GCATGGAGGAGCGGCAAC 61.513 66.667 1.45 0.00 0.00 4.17
83 84 2.553079 GGCAACGTTTGAACAGTTCA 57.447 45.000 12.24 12.24 38.04 3.18
84 85 2.182014 GGCAACGTTTGAACAGTTCAC 58.818 47.619 15.93 4.73 39.87 3.18
85 86 2.182014 GCAACGTTTGAACAGTTCACC 58.818 47.619 15.93 8.56 39.87 4.02
86 87 2.792749 CAACGTTTGAACAGTTCACCC 58.207 47.619 15.93 8.21 39.87 4.61
87 88 2.116827 ACGTTTGAACAGTTCACCCA 57.883 45.000 15.93 0.00 39.87 4.51
88 89 2.438411 ACGTTTGAACAGTTCACCCAA 58.562 42.857 15.93 5.18 39.87 4.12
89 90 3.020984 ACGTTTGAACAGTTCACCCAAT 58.979 40.909 15.93 0.00 39.87 3.16
90 91 3.445805 ACGTTTGAACAGTTCACCCAATT 59.554 39.130 15.93 0.00 39.87 2.32
91 92 4.081917 ACGTTTGAACAGTTCACCCAATTT 60.082 37.500 15.93 0.00 39.87 1.82
92 93 4.502645 CGTTTGAACAGTTCACCCAATTTC 59.497 41.667 15.93 0.00 39.87 2.17
93 94 5.415221 GTTTGAACAGTTCACCCAATTTCA 58.585 37.500 15.93 0.00 39.87 2.69
94 95 5.867903 TTGAACAGTTCACCCAATTTCAT 57.132 34.783 15.93 0.00 39.87 2.57
95 96 5.452078 TGAACAGTTCACCCAATTTCATC 57.548 39.130 12.24 0.00 34.08 2.92
96 97 4.892345 TGAACAGTTCACCCAATTTCATCA 59.108 37.500 12.24 0.00 34.08 3.07
97 98 5.539574 TGAACAGTTCACCCAATTTCATCAT 59.460 36.000 12.24 0.00 34.08 2.45
98 99 5.395682 ACAGTTCACCCAATTTCATCATG 57.604 39.130 0.00 0.00 0.00 3.07
99 100 5.078949 ACAGTTCACCCAATTTCATCATGA 58.921 37.500 0.00 0.00 0.00 3.07
100 101 5.047802 ACAGTTCACCCAATTTCATCATGAC 60.048 40.000 0.00 0.00 0.00 3.06
101 102 5.047872 CAGTTCACCCAATTTCATCATGACA 60.048 40.000 0.00 0.00 0.00 3.58
102 103 5.718130 AGTTCACCCAATTTCATCATGACAT 59.282 36.000 0.00 0.00 0.00 3.06
103 104 5.585820 TCACCCAATTTCATCATGACATG 57.414 39.130 9.28 9.28 0.00 3.21
104 105 4.116961 CACCCAATTTCATCATGACATGC 58.883 43.478 10.76 0.00 0.00 4.06
105 106 3.181484 ACCCAATTTCATCATGACATGCG 60.181 43.478 10.76 4.60 0.00 4.73
106 107 3.181484 CCCAATTTCATCATGACATGCGT 60.181 43.478 10.76 0.00 0.00 5.24
107 108 3.794564 CCAATTTCATCATGACATGCGTG 59.205 43.478 10.76 3.82 34.72 5.34
108 109 4.439016 CCAATTTCATCATGACATGCGTGA 60.439 41.667 14.17 13.47 46.01 4.35
114 115 3.249986 TCATGACATGCGTGATTGAGA 57.750 42.857 14.17 0.99 37.60 3.27
115 116 3.598299 TCATGACATGCGTGATTGAGAA 58.402 40.909 14.17 0.00 37.60 2.87
116 117 4.002316 TCATGACATGCGTGATTGAGAAA 58.998 39.130 14.17 0.00 37.60 2.52
117 118 3.811722 TGACATGCGTGATTGAGAAAC 57.188 42.857 14.17 0.00 0.00 2.78
118 119 3.402110 TGACATGCGTGATTGAGAAACT 58.598 40.909 14.17 0.00 0.00 2.66
119 120 3.433274 TGACATGCGTGATTGAGAAACTC 59.567 43.478 14.17 0.00 0.00 3.01
120 121 3.402110 ACATGCGTGATTGAGAAACTCA 58.598 40.909 14.17 0.00 38.87 3.41
121 122 3.187227 ACATGCGTGATTGAGAAACTCAC 59.813 43.478 14.17 0.00 40.46 3.51
125 126 3.174799 GTGATTGAGAAACTCACGTGC 57.825 47.619 11.67 0.00 40.46 5.34
126 127 2.543848 GTGATTGAGAAACTCACGTGCA 59.456 45.455 11.67 0.00 40.46 4.57
127 128 3.002246 GTGATTGAGAAACTCACGTGCAA 59.998 43.478 11.67 7.83 40.46 4.08
128 129 3.002246 TGATTGAGAAACTCACGTGCAAC 59.998 43.478 11.67 0.42 40.46 4.17
129 130 2.309528 TGAGAAACTCACGTGCAACT 57.690 45.000 11.67 5.52 35.39 3.16
130 131 1.933181 TGAGAAACTCACGTGCAACTG 59.067 47.619 11.67 0.88 35.39 3.16
131 132 0.657840 AGAAACTCACGTGCAACTGC 59.342 50.000 11.67 0.00 42.50 4.40
145 146 4.816786 GCAACTGCAAAATGATTTGGTT 57.183 36.364 0.00 0.00 44.93 3.67
146 147 4.529446 GCAACTGCAAAATGATTTGGTTG 58.471 39.130 15.28 15.28 44.93 3.77
147 148 4.272991 GCAACTGCAAAATGATTTGGTTGA 59.727 37.500 19.87 0.00 43.67 3.18
148 149 5.559417 GCAACTGCAAAATGATTTGGTTGAG 60.559 40.000 19.87 7.85 43.67 3.02
149 150 5.280654 ACTGCAAAATGATTTGGTTGAGT 57.719 34.783 0.00 0.00 44.93 3.41
150 151 6.403866 ACTGCAAAATGATTTGGTTGAGTA 57.596 33.333 0.00 0.00 44.93 2.59
151 152 6.996509 ACTGCAAAATGATTTGGTTGAGTAT 58.003 32.000 0.00 0.00 44.93 2.12
152 153 8.121305 ACTGCAAAATGATTTGGTTGAGTATA 57.879 30.769 0.00 0.00 44.93 1.47
153 154 8.752187 ACTGCAAAATGATTTGGTTGAGTATAT 58.248 29.630 0.00 0.00 44.93 0.86
154 155 8.929827 TGCAAAATGATTTGGTTGAGTATATG 57.070 30.769 0.00 0.00 44.93 1.78
155 156 8.530311 TGCAAAATGATTTGGTTGAGTATATGT 58.470 29.630 0.00 0.00 44.93 2.29
156 157 8.810427 GCAAAATGATTTGGTTGAGTATATGTG 58.190 33.333 0.00 0.00 44.93 3.21
157 158 9.304731 CAAAATGATTTGGTTGAGTATATGTGG 57.695 33.333 0.00 0.00 41.81 4.17
158 159 7.587037 AATGATTTGGTTGAGTATATGTGGG 57.413 36.000 0.00 0.00 0.00 4.61
159 160 4.887071 TGATTTGGTTGAGTATATGTGGGC 59.113 41.667 0.00 0.00 0.00 5.36
160 161 4.584638 TTTGGTTGAGTATATGTGGGCT 57.415 40.909 0.00 0.00 0.00 5.19
161 162 3.838244 TGGTTGAGTATATGTGGGCTC 57.162 47.619 0.00 0.00 0.00 4.70
162 163 3.111484 TGGTTGAGTATATGTGGGCTCA 58.889 45.455 0.00 0.00 36.35 4.26
163 164 3.118408 TGGTTGAGTATATGTGGGCTCAC 60.118 47.826 10.67 10.67 43.87 3.51
164 165 3.123804 GTTGAGTATATGTGGGCTCACG 58.876 50.000 13.09 0.00 46.42 4.35
165 166 2.384828 TGAGTATATGTGGGCTCACGT 58.615 47.619 17.22 17.22 46.42 4.49
166 167 2.764010 TGAGTATATGTGGGCTCACGTT 59.236 45.455 18.40 7.01 46.42 3.99
167 168 3.123804 GAGTATATGTGGGCTCACGTTG 58.876 50.000 18.40 0.00 46.42 4.10
168 169 2.764010 AGTATATGTGGGCTCACGTTGA 59.236 45.455 18.40 0.00 46.42 3.18
169 170 2.024176 ATATGTGGGCTCACGTTGAC 57.976 50.000 18.40 0.00 46.42 3.18
170 171 0.682292 TATGTGGGCTCACGTTGACA 59.318 50.000 18.40 0.00 46.42 3.58
171 172 0.179032 ATGTGGGCTCACGTTGACAA 60.179 50.000 13.09 0.00 46.42 3.18
172 173 1.092921 TGTGGGCTCACGTTGACAAC 61.093 55.000 13.09 8.34 46.42 3.32
173 174 1.525077 TGGGCTCACGTTGACAACC 60.525 57.895 12.66 0.00 0.00 3.77
174 175 1.525077 GGGCTCACGTTGACAACCA 60.525 57.895 12.66 0.00 0.00 3.67
175 176 1.098712 GGGCTCACGTTGACAACCAA 61.099 55.000 12.66 0.00 0.00 3.67
176 177 0.951558 GGCTCACGTTGACAACCAAT 59.048 50.000 12.66 0.00 37.08 3.16
177 178 2.147958 GGCTCACGTTGACAACCAATA 58.852 47.619 12.66 0.00 37.08 1.90
178 179 2.159627 GGCTCACGTTGACAACCAATAG 59.840 50.000 12.66 6.52 37.08 1.73
179 180 3.064207 GCTCACGTTGACAACCAATAGA 58.936 45.455 12.66 3.35 37.08 1.98
180 181 3.684788 GCTCACGTTGACAACCAATAGAT 59.315 43.478 12.66 0.00 37.08 1.98
181 182 4.436050 GCTCACGTTGACAACCAATAGATG 60.436 45.833 12.66 0.00 37.08 2.90
182 183 4.637276 TCACGTTGACAACCAATAGATGT 58.363 39.130 12.66 0.00 37.08 3.06
183 184 5.785243 TCACGTTGACAACCAATAGATGTA 58.215 37.500 12.66 0.00 37.08 2.29
184 185 6.403049 TCACGTTGACAACCAATAGATGTAT 58.597 36.000 12.66 0.00 37.08 2.29
185 186 6.533723 TCACGTTGACAACCAATAGATGTATC 59.466 38.462 12.66 0.00 37.08 2.24
186 187 6.535150 CACGTTGACAACCAATAGATGTATCT 59.465 38.462 12.66 0.00 40.86 1.98
187 188 7.064609 CACGTTGACAACCAATAGATGTATCTT 59.935 37.037 12.66 0.00 38.32 2.40
188 189 7.277981 ACGTTGACAACCAATAGATGTATCTTC 59.722 37.037 12.66 0.00 38.32 2.87
189 190 7.492669 CGTTGACAACCAATAGATGTATCTTCT 59.507 37.037 12.66 0.00 38.32 2.85
190 191 9.167311 GTTGACAACCAATAGATGTATCTTCTT 57.833 33.333 7.10 0.00 38.32 2.52
191 192 9.739276 TTGACAACCAATAGATGTATCTTCTTT 57.261 29.630 0.00 0.00 38.32 2.52
202 203 8.359060 AGATGTATCTTCTTTATTCGACTTGC 57.641 34.615 0.00 0.00 31.97 4.01
203 204 7.981789 AGATGTATCTTCTTTATTCGACTTGCA 59.018 33.333 0.00 0.00 31.97 4.08
204 205 7.899178 TGTATCTTCTTTATTCGACTTGCAA 57.101 32.000 0.00 0.00 0.00 4.08
205 206 8.317891 TGTATCTTCTTTATTCGACTTGCAAA 57.682 30.769 0.00 0.00 0.00 3.68
206 207 8.779303 TGTATCTTCTTTATTCGACTTGCAAAA 58.221 29.630 0.00 0.00 0.00 2.44
207 208 9.052080 GTATCTTCTTTATTCGACTTGCAAAAC 57.948 33.333 0.00 0.00 0.00 2.43
208 209 7.259290 TCTTCTTTATTCGACTTGCAAAACT 57.741 32.000 0.00 0.00 0.00 2.66
209 210 8.373048 TCTTCTTTATTCGACTTGCAAAACTA 57.627 30.769 0.00 0.00 0.00 2.24
210 211 8.999431 TCTTCTTTATTCGACTTGCAAAACTAT 58.001 29.630 0.00 0.00 0.00 2.12
211 212 8.948853 TTCTTTATTCGACTTGCAAAACTATG 57.051 30.769 0.00 0.00 0.00 2.23
212 213 8.094798 TCTTTATTCGACTTGCAAAACTATGT 57.905 30.769 0.00 0.00 0.00 2.29
213 214 8.015087 TCTTTATTCGACTTGCAAAACTATGTG 58.985 33.333 0.00 0.00 0.00 3.21
214 215 5.940192 ATTCGACTTGCAAAACTATGTGA 57.060 34.783 0.00 0.00 0.00 3.58
215 216 4.990543 TCGACTTGCAAAACTATGTGAG 57.009 40.909 0.00 0.00 0.00 3.51
216 217 4.627058 TCGACTTGCAAAACTATGTGAGA 58.373 39.130 0.00 0.00 0.00 3.27
217 218 4.447724 TCGACTTGCAAAACTATGTGAGAC 59.552 41.667 0.00 0.00 0.00 3.36
218 219 4.211164 CGACTTGCAAAACTATGTGAGACA 59.789 41.667 0.00 0.00 0.00 3.41
219 220 5.106948 CGACTTGCAAAACTATGTGAGACAT 60.107 40.000 0.00 0.00 42.35 3.06
220 221 6.566564 CGACTTGCAAAACTATGTGAGACATT 60.567 38.462 0.00 0.00 39.88 2.71
221 222 7.042797 ACTTGCAAAACTATGTGAGACATTT 57.957 32.000 0.00 0.00 39.88 2.32
222 223 7.491682 ACTTGCAAAACTATGTGAGACATTTT 58.508 30.769 0.00 0.00 39.88 1.82
223 224 7.981225 ACTTGCAAAACTATGTGAGACATTTTT 59.019 29.630 0.00 0.00 39.88 1.94
224 225 9.462174 CTTGCAAAACTATGTGAGACATTTTTA 57.538 29.630 0.00 0.00 39.88 1.52
225 226 9.979578 TTGCAAAACTATGTGAGACATTTTTAT 57.020 25.926 0.00 0.00 39.88 1.40
226 227 9.979578 TGCAAAACTATGTGAGACATTTTTATT 57.020 25.926 0.00 0.00 39.88 1.40
251 252 9.771534 TTTTTATTTGGCTTGTAAAACTATGCT 57.228 25.926 0.00 0.00 29.79 3.79
256 257 9.942850 ATTTGGCTTGTAAAACTATGCTATTTT 57.057 25.926 0.00 0.00 32.85 1.82
269 270 9.783256 AACTATGCTATTTTATTCGGTTCAAAC 57.217 29.630 0.00 0.00 0.00 2.93
270 271 9.174166 ACTATGCTATTTTATTCGGTTCAAACT 57.826 29.630 0.00 0.00 0.00 2.66
273 274 9.950680 ATGCTATTTTATTCGGTTCAAACTATG 57.049 29.630 0.00 0.00 0.00 2.23
274 275 8.952278 TGCTATTTTATTCGGTTCAAACTATGT 58.048 29.630 0.00 0.00 0.00 2.29
275 276 9.783256 GCTATTTTATTCGGTTCAAACTATGTT 57.217 29.630 0.00 0.00 0.00 2.71
282 283 5.945155 TCGGTTCAAACTATGTTATTTGGC 58.055 37.500 0.00 0.00 36.62 4.52
283 284 5.708230 TCGGTTCAAACTATGTTATTTGGCT 59.292 36.000 0.00 0.00 36.62 4.75
284 285 6.879993 TCGGTTCAAACTATGTTATTTGGCTA 59.120 34.615 0.00 0.00 36.62 3.93
285 286 7.554835 TCGGTTCAAACTATGTTATTTGGCTAT 59.445 33.333 0.00 0.00 36.62 2.97
286 287 8.188139 CGGTTCAAACTATGTTATTTGGCTATT 58.812 33.333 0.00 0.00 36.62 1.73
287 288 9.301153 GGTTCAAACTATGTTATTTGGCTATTG 57.699 33.333 0.00 0.00 36.62 1.90
288 289 9.855021 GTTCAAACTATGTTATTTGGCTATTGT 57.145 29.630 0.00 0.00 36.62 2.71
297 298 9.664332 ATGTTATTTGGCTATTGTTTAAATGCA 57.336 25.926 0.00 0.00 0.00 3.96
298 299 9.494271 TGTTATTTGGCTATTGTTTAAATGCAA 57.506 25.926 0.00 0.00 0.00 4.08
303 304 8.613060 TTGGCTATTGTTTAAATGCAAAATCA 57.387 26.923 0.00 0.00 0.00 2.57
304 305 8.613060 TGGCTATTGTTTAAATGCAAAATCAA 57.387 26.923 0.00 0.00 0.00 2.57
305 306 9.228949 TGGCTATTGTTTAAATGCAAAATCAAT 57.771 25.926 14.95 14.95 0.00 2.57
306 307 9.493206 GGCTATTGTTTAAATGCAAAATCAATG 57.507 29.630 17.61 12.24 0.00 2.82
307 308 9.002080 GCTATTGTTTAAATGCAAAATCAATGC 57.998 29.630 17.61 15.53 44.08 3.56
317 318 4.460505 GCAAAATCAATGCAAAAGTGAGC 58.539 39.130 0.00 0.00 43.29 4.26
318 319 4.212636 GCAAAATCAATGCAAAAGTGAGCT 59.787 37.500 0.00 0.00 43.29 4.09
319 320 5.406175 GCAAAATCAATGCAAAAGTGAGCTA 59.594 36.000 0.00 0.00 43.29 3.32
320 321 6.091713 GCAAAATCAATGCAAAAGTGAGCTAT 59.908 34.615 0.00 0.00 43.29 2.97
321 322 7.672738 CAAAATCAATGCAAAAGTGAGCTATC 58.327 34.615 0.00 0.00 36.10 2.08
322 323 6.770746 AATCAATGCAAAAGTGAGCTATCT 57.229 33.333 0.00 0.00 36.10 1.98
323 324 5.556355 TCAATGCAAAAGTGAGCTATCTG 57.444 39.130 0.00 0.00 0.00 2.90
324 325 5.005740 TCAATGCAAAAGTGAGCTATCTGT 58.994 37.500 0.00 0.00 0.00 3.41
325 326 5.474532 TCAATGCAAAAGTGAGCTATCTGTT 59.525 36.000 0.00 0.00 0.00 3.16
326 327 4.754372 TGCAAAAGTGAGCTATCTGTTG 57.246 40.909 13.22 13.22 33.49 3.33
327 328 4.388485 TGCAAAAGTGAGCTATCTGTTGA 58.612 39.130 18.85 6.64 32.45 3.18
328 329 4.821260 TGCAAAAGTGAGCTATCTGTTGAA 59.179 37.500 18.85 9.80 32.45 2.69
329 330 5.299028 TGCAAAAGTGAGCTATCTGTTGAAA 59.701 36.000 18.85 7.87 32.45 2.69
330 331 6.016024 TGCAAAAGTGAGCTATCTGTTGAAAT 60.016 34.615 18.85 0.00 32.45 2.17
331 332 7.174772 TGCAAAAGTGAGCTATCTGTTGAAATA 59.825 33.333 18.85 4.86 32.45 1.40
332 333 8.186821 GCAAAAGTGAGCTATCTGTTGAAATAT 58.813 33.333 18.85 0.00 32.45 1.28
333 334 9.499585 CAAAAGTGAGCTATCTGTTGAAATATG 57.500 33.333 12.55 0.00 32.45 1.78
334 335 7.798596 AAGTGAGCTATCTGTTGAAATATGG 57.201 36.000 0.00 0.00 0.00 2.74
335 336 5.762218 AGTGAGCTATCTGTTGAAATATGGC 59.238 40.000 0.00 0.00 0.00 4.40
336 337 4.751600 TGAGCTATCTGTTGAAATATGGCG 59.248 41.667 0.00 0.00 0.00 5.69
337 338 4.067896 AGCTATCTGTTGAAATATGGCGG 58.932 43.478 0.00 0.00 0.00 6.13
338 339 3.365364 GCTATCTGTTGAAATATGGCGGC 60.365 47.826 0.00 0.00 0.00 6.53
339 340 1.388547 TCTGTTGAAATATGGCGGCC 58.611 50.000 13.32 13.32 0.00 6.13
340 341 1.102154 CTGTTGAAATATGGCGGCCA 58.898 50.000 26.11 26.11 38.19 5.36
341 342 1.066002 CTGTTGAAATATGGCGGCCAG 59.934 52.381 27.62 5.50 36.75 4.85
356 357 4.015406 CAGCAGGCCACACCGGTA 62.015 66.667 6.87 0.00 46.52 4.02
357 358 4.016706 AGCAGGCCACACCGGTAC 62.017 66.667 6.87 0.00 46.52 3.34
358 359 4.323477 GCAGGCCACACCGGTACA 62.323 66.667 6.87 0.00 46.52 2.90
359 360 2.668632 CAGGCCACACCGGTACAT 59.331 61.111 6.87 0.00 46.52 2.29
360 361 1.901820 CAGGCCACACCGGTACATA 59.098 57.895 6.87 0.00 46.52 2.29
361 362 0.468226 CAGGCCACACCGGTACATAT 59.532 55.000 6.87 0.00 46.52 1.78
362 363 0.468226 AGGCCACACCGGTACATATG 59.532 55.000 6.87 0.00 46.52 1.78
363 364 0.534203 GGCCACACCGGTACATATGG 60.534 60.000 6.87 11.58 36.97 2.74
364 365 0.534203 GCCACACCGGTACATATGGG 60.534 60.000 6.87 2.20 36.97 4.00
365 366 0.834612 CCACACCGGTACATATGGGT 59.165 55.000 6.87 1.45 0.00 4.51
366 367 1.202604 CCACACCGGTACATATGGGTC 60.203 57.143 6.87 0.00 0.00 4.46
367 368 0.748450 ACACCGGTACATATGGGTCG 59.252 55.000 6.87 7.20 0.00 4.79
368 369 1.034356 CACCGGTACATATGGGTCGA 58.966 55.000 6.87 0.00 0.00 4.20
369 370 1.035139 ACCGGTACATATGGGTCGAC 58.965 55.000 4.49 7.13 0.00 4.20
370 371 0.039798 CCGGTACATATGGGTCGACG 60.040 60.000 9.92 0.00 0.00 5.12
371 372 0.662374 CGGTACATATGGGTCGACGC 60.662 60.000 24.41 24.41 0.00 5.19
372 373 0.662374 GGTACATATGGGTCGACGCG 60.662 60.000 25.18 14.52 0.00 6.01
373 374 0.029834 GTACATATGGGTCGACGCGT 59.970 55.000 27.55 27.55 0.00 6.01
374 375 0.740149 TACATATGGGTCGACGCGTT 59.260 50.000 29.22 19.90 0.00 4.84
375 376 0.804544 ACATATGGGTCGACGCGTTG 60.805 55.000 29.22 25.37 0.00 4.10
376 377 1.227147 ATATGGGTCGACGCGTTGG 60.227 57.895 29.22 15.24 0.00 3.77
377 378 2.638330 ATATGGGTCGACGCGTTGGG 62.638 60.000 29.22 12.67 0.00 4.12
394 395 2.749839 GCACGCTGCCAACCCATA 60.750 61.111 0.00 0.00 37.42 2.74
395 396 2.120909 GCACGCTGCCAACCCATAT 61.121 57.895 0.00 0.00 37.42 1.78
396 397 2.024918 CACGCTGCCAACCCATATC 58.975 57.895 0.00 0.00 0.00 1.63
397 398 0.464373 CACGCTGCCAACCCATATCT 60.464 55.000 0.00 0.00 0.00 1.98
398 399 1.128200 ACGCTGCCAACCCATATCTA 58.872 50.000 0.00 0.00 0.00 1.98
399 400 1.488812 ACGCTGCCAACCCATATCTAA 59.511 47.619 0.00 0.00 0.00 2.10
400 401 2.092646 ACGCTGCCAACCCATATCTAAA 60.093 45.455 0.00 0.00 0.00 1.85
401 402 2.948979 CGCTGCCAACCCATATCTAAAA 59.051 45.455 0.00 0.00 0.00 1.52
402 403 3.243068 CGCTGCCAACCCATATCTAAAAC 60.243 47.826 0.00 0.00 0.00 2.43
403 404 3.699038 GCTGCCAACCCATATCTAAAACA 59.301 43.478 0.00 0.00 0.00 2.83
404 405 4.202050 GCTGCCAACCCATATCTAAAACAG 60.202 45.833 0.00 0.00 0.00 3.16
405 406 4.277476 TGCCAACCCATATCTAAAACAGG 58.723 43.478 0.00 0.00 0.00 4.00
406 407 3.636764 GCCAACCCATATCTAAAACAGGG 59.363 47.826 0.00 0.00 42.07 4.45
407 408 3.636764 CCAACCCATATCTAAAACAGGGC 59.363 47.826 0.00 0.00 39.97 5.19
408 409 3.208747 ACCCATATCTAAAACAGGGCG 57.791 47.619 0.00 0.00 39.97 6.13
409 410 2.158667 ACCCATATCTAAAACAGGGCGG 60.159 50.000 0.00 0.00 39.97 6.13
410 411 2.105821 CCCATATCTAAAACAGGGCGGA 59.894 50.000 0.00 0.00 0.00 5.54
411 412 3.139077 CCATATCTAAAACAGGGCGGAC 58.861 50.000 0.00 0.00 0.00 4.79
412 413 2.589798 TATCTAAAACAGGGCGGACG 57.410 50.000 0.00 0.00 0.00 4.79
413 414 0.743345 ATCTAAAACAGGGCGGACGC 60.743 55.000 8.39 8.39 41.06 5.19
464 465 6.689178 AAAAACAAACGAAATCATCATCCG 57.311 33.333 0.00 0.00 0.00 4.18
465 466 5.371115 AAACAAACGAAATCATCATCCGT 57.629 34.783 0.00 0.00 34.74 4.69
466 467 5.371115 AACAAACGAAATCATCATCCGTT 57.629 34.783 0.00 0.00 43.98 4.44
469 470 4.355543 AACGAAATCATCATCCGTTTGG 57.644 40.909 0.00 0.00 39.98 3.28
470 471 2.682856 ACGAAATCATCATCCGTTTGGG 59.317 45.455 0.00 0.00 35.24 4.12
471 472 2.682856 CGAAATCATCATCCGTTTGGGT 59.317 45.455 0.00 0.00 37.00 4.51
472 473 3.242739 CGAAATCATCATCCGTTTGGGTC 60.243 47.826 0.00 0.00 37.00 4.46
473 474 1.953559 ATCATCATCCGTTTGGGTCG 58.046 50.000 0.00 0.00 37.00 4.79
475 476 1.451387 ATCATCCGTTTGGGTCGGC 60.451 57.895 0.00 0.00 46.49 5.54
476 477 2.886730 ATCATCCGTTTGGGTCGGCC 62.887 60.000 0.00 0.00 46.49 6.13
486 487 4.324991 GGTCGGCCCGTTGGAGTT 62.325 66.667 1.63 0.00 0.00 3.01
487 488 3.047877 GTCGGCCCGTTGGAGTTG 61.048 66.667 1.63 0.00 0.00 3.16
490 491 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
496 497 2.354704 CCCGTTGGAGTTGCTCTTATCA 60.355 50.000 0.00 0.00 0.00 2.15
584 585 2.089201 GGTGAAATTCGGGGAAATCGT 58.911 47.619 0.00 0.00 0.00 3.73
596 597 5.092781 CGGGGAAATCGTGAATTTACAAAG 58.907 41.667 0.95 0.00 39.62 2.77
597 598 5.407502 GGGGAAATCGTGAATTTACAAAGG 58.592 41.667 0.95 0.00 39.62 3.11
598 599 5.407502 GGGAAATCGTGAATTTACAAAGGG 58.592 41.667 0.95 0.00 39.62 3.95
599 600 5.047590 GGGAAATCGTGAATTTACAAAGGGT 60.048 40.000 0.95 0.00 39.62 4.34
600 601 5.861787 GGAAATCGTGAATTTACAAAGGGTG 59.138 40.000 0.95 0.00 38.00 4.61
601 602 3.907894 TCGTGAATTTACAAAGGGTGC 57.092 42.857 0.95 0.00 0.00 5.01
602 603 2.224549 TCGTGAATTTACAAAGGGTGCG 59.775 45.455 0.95 0.00 0.00 5.34
603 604 2.031508 CGTGAATTTACAAAGGGTGCGT 60.032 45.455 0.95 0.00 0.00 5.24
604 605 3.549221 CGTGAATTTACAAAGGGTGCGTT 60.549 43.478 0.95 0.00 0.00 4.84
605 606 4.364860 GTGAATTTACAAAGGGTGCGTTT 58.635 39.130 0.00 0.00 0.00 3.60
606 607 5.521544 GTGAATTTACAAAGGGTGCGTTTA 58.478 37.500 0.00 0.00 0.00 2.01
607 608 5.627780 GTGAATTTACAAAGGGTGCGTTTAG 59.372 40.000 0.00 0.00 0.00 1.85
608 609 4.776795 ATTTACAAAGGGTGCGTTTAGG 57.223 40.909 0.00 0.00 0.00 2.69
609 610 3.488778 TTACAAAGGGTGCGTTTAGGA 57.511 42.857 0.00 0.00 0.00 2.94
610 611 1.601166 ACAAAGGGTGCGTTTAGGAC 58.399 50.000 0.00 0.00 40.80 3.85
611 612 1.134037 ACAAAGGGTGCGTTTAGGACA 60.134 47.619 0.00 0.00 43.57 4.02
612 613 1.265905 CAAAGGGTGCGTTTAGGACAC 59.734 52.381 0.00 0.00 45.80 3.67
613 614 4.783667 GGGTGCGTTTAGGACACA 57.216 55.556 0.00 0.00 44.71 3.72
614 615 3.243128 GGGTGCGTTTAGGACACAT 57.757 52.632 0.00 0.00 44.71 3.21
615 616 1.084289 GGGTGCGTTTAGGACACATC 58.916 55.000 0.00 0.00 44.71 3.06
616 617 1.338769 GGGTGCGTTTAGGACACATCT 60.339 52.381 0.00 0.00 44.71 2.90
617 618 2.093869 GGGTGCGTTTAGGACACATCTA 60.094 50.000 0.00 0.00 44.71 1.98
618 619 3.187700 GGTGCGTTTAGGACACATCTAG 58.812 50.000 0.00 0.00 43.57 2.43
619 620 3.119245 GGTGCGTTTAGGACACATCTAGA 60.119 47.826 0.00 0.00 43.57 2.43
620 621 4.441634 GGTGCGTTTAGGACACATCTAGAT 60.442 45.833 0.00 0.00 43.57 1.98
621 622 4.504461 GTGCGTTTAGGACACATCTAGATG 59.496 45.833 27.63 27.63 41.21 2.90
635 636 6.469139 CATCTAGATGTGCTCTGCTTATTG 57.531 41.667 22.42 0.00 35.28 1.90
636 637 4.375272 TCTAGATGTGCTCTGCTTATTGC 58.625 43.478 0.00 0.00 43.25 3.56
637 638 7.454570 CATCTAGATGTGCTCTGCTTATTGCA 61.455 42.308 22.42 0.00 40.52 4.08
652 653 7.308782 GCTTATTGCACATCTAAGTAAGTGT 57.691 36.000 0.00 0.00 42.31 3.55
653 654 8.420374 GCTTATTGCACATCTAAGTAAGTGTA 57.580 34.615 0.00 0.00 42.31 2.90
654 655 9.046296 GCTTATTGCACATCTAAGTAAGTGTAT 57.954 33.333 0.00 0.00 42.31 2.29
658 659 8.479313 TTGCACATCTAAGTAAGTGTATCAAG 57.521 34.615 0.00 0.00 34.59 3.02
659 660 6.535150 TGCACATCTAAGTAAGTGTATCAAGC 59.465 38.462 0.00 0.00 34.59 4.01
660 661 6.535150 GCACATCTAAGTAAGTGTATCAAGCA 59.465 38.462 0.00 0.00 34.59 3.91
661 662 7.225538 GCACATCTAAGTAAGTGTATCAAGCAT 59.774 37.037 0.00 0.00 34.59 3.79
662 663 9.750125 CACATCTAAGTAAGTGTATCAAGCATA 57.250 33.333 0.00 0.00 0.00 3.14
668 669 8.615878 AAGTAAGTGTATCAAGCATAAACACA 57.384 30.769 6.67 0.00 42.21 3.72
669 670 8.615878 AGTAAGTGTATCAAGCATAAACACAA 57.384 30.769 6.67 0.00 42.21 3.33
670 671 9.062524 AGTAAGTGTATCAAGCATAAACACAAA 57.937 29.630 6.67 0.00 42.21 2.83
671 672 9.672086 GTAAGTGTATCAAGCATAAACACAAAA 57.328 29.630 6.67 0.00 42.21 2.44
738 739 9.797642 ATCAATAACATAGGATTTAGATGTGCA 57.202 29.630 0.00 0.00 34.10 4.57
739 740 9.625747 TCAATAACATAGGATTTAGATGTGCAA 57.374 29.630 0.00 0.00 34.10 4.08
744 745 9.632638 AACATAGGATTTAGATGTGCAATACTT 57.367 29.630 0.00 0.00 34.10 2.24
748 749 8.627208 AGGATTTAGATGTGCAATACTTATGG 57.373 34.615 0.00 0.00 0.00 2.74
749 750 7.175641 AGGATTTAGATGTGCAATACTTATGGC 59.824 37.037 0.00 0.00 33.16 4.40
750 751 7.040478 GGATTTAGATGTGCAATACTTATGGCA 60.040 37.037 0.00 0.00 40.19 4.92
755 756 3.260475 TGCAATACTTATGGCACGTCT 57.740 42.857 0.00 0.00 37.70 4.18
756 757 2.935849 TGCAATACTTATGGCACGTCTG 59.064 45.455 0.00 0.00 37.70 3.51
757 758 2.286418 GCAATACTTATGGCACGTCTGC 60.286 50.000 0.00 0.00 43.41 4.26
758 759 3.198068 CAATACTTATGGCACGTCTGCT 58.802 45.455 0.00 0.00 43.66 4.24
759 760 3.543680 ATACTTATGGCACGTCTGCTT 57.456 42.857 0.00 0.00 43.66 3.91
760 761 2.185004 ACTTATGGCACGTCTGCTTT 57.815 45.000 0.00 0.00 43.66 3.51
761 762 3.328382 ACTTATGGCACGTCTGCTTTA 57.672 42.857 0.00 0.00 43.66 1.85
762 763 3.262420 ACTTATGGCACGTCTGCTTTAG 58.738 45.455 0.00 0.00 43.66 1.85
763 764 1.651987 TATGGCACGTCTGCTTTAGC 58.348 50.000 0.00 0.00 43.66 3.09
803 804 2.180017 GCCGTCGCCGTCTAGAAA 59.820 61.111 0.00 0.00 0.00 2.52
933 939 0.476771 ATCCCTCTCGAGTCTCCTCC 59.523 60.000 13.13 0.00 33.93 4.30
935 941 1.641552 CCCTCTCGAGTCTCCTCCCT 61.642 65.000 13.13 0.00 33.93 4.20
950 956 2.939353 CCTTCCCCCGTCCCCTTT 60.939 66.667 0.00 0.00 0.00 3.11
1742 2198 4.450419 GTGATGATGCTTATCTTCCCGAAG 59.550 45.833 0.00 0.00 39.71 3.79
1766 2222 3.252974 ACCTGTGTAGTTGATAGCTGC 57.747 47.619 0.00 0.00 0.00 5.25
1801 2257 2.361757 TGCAATTGGGTCTCAAACAGTG 59.638 45.455 7.72 0.00 39.05 3.66
1811 2267 2.102420 TCTCAAACAGTGACGGTCATGT 59.898 45.455 14.78 15.34 31.13 3.21
1812 2268 2.209273 TCAAACAGTGACGGTCATGTG 58.791 47.619 14.78 16.28 0.00 3.21
1916 2372 6.202954 CCTTTACAAAGTGAGATTGAGACGTT 59.797 38.462 0.00 0.00 34.20 3.99
2078 2534 7.713764 AAATGGTTCAGTGAATTTAGTTTGC 57.286 32.000 9.18 0.00 0.00 3.68
2183 2639 6.290294 TCTCTTTACACCCTGTAACCATAC 57.710 41.667 0.00 0.00 41.97 2.39
2498 2964 3.468770 AGAGCTCAATCATCATGCTGTC 58.531 45.455 17.77 0.00 33.83 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.921677 TGAAACCCTTGATCGTACAGAC 58.078 45.455 0.00 0.00 0.00 3.51
4 5 3.576982 ACTGAAACCCTTGATCGTACAGA 59.423 43.478 0.00 0.00 0.00 3.41
5 6 3.926616 ACTGAAACCCTTGATCGTACAG 58.073 45.455 0.00 0.00 0.00 2.74
6 7 4.345859 AACTGAAACCCTTGATCGTACA 57.654 40.909 0.00 0.00 0.00 2.90
7 8 4.753107 TGAAACTGAAACCCTTGATCGTAC 59.247 41.667 0.00 0.00 0.00 3.67
8 9 4.963373 TGAAACTGAAACCCTTGATCGTA 58.037 39.130 0.00 0.00 0.00 3.43
10 11 3.189287 CCTGAAACTGAAACCCTTGATCG 59.811 47.826 0.00 0.00 0.00 3.69
11 12 3.507622 CCCTGAAACTGAAACCCTTGATC 59.492 47.826 0.00 0.00 0.00 2.92
12 13 3.117131 ACCCTGAAACTGAAACCCTTGAT 60.117 43.478 0.00 0.00 0.00 2.57
13 14 2.243736 ACCCTGAAACTGAAACCCTTGA 59.756 45.455 0.00 0.00 0.00 3.02
14 15 2.362077 CACCCTGAAACTGAAACCCTTG 59.638 50.000 0.00 0.00 0.00 3.61
15 16 2.243736 TCACCCTGAAACTGAAACCCTT 59.756 45.455 0.00 0.00 0.00 3.95
16 17 1.850345 TCACCCTGAAACTGAAACCCT 59.150 47.619 0.00 0.00 0.00 4.34
17 18 2.158667 TCTCACCCTGAAACTGAAACCC 60.159 50.000 0.00 0.00 0.00 4.11
18 19 3.208747 TCTCACCCTGAAACTGAAACC 57.791 47.619 0.00 0.00 0.00 3.27
19 20 4.580580 ACATTCTCACCCTGAAACTGAAAC 59.419 41.667 0.00 0.00 0.00 2.78
20 21 4.792068 ACATTCTCACCCTGAAACTGAAA 58.208 39.130 0.00 0.00 0.00 2.69
21 22 4.437682 ACATTCTCACCCTGAAACTGAA 57.562 40.909 0.00 0.00 0.00 3.02
22 23 4.136796 CAACATTCTCACCCTGAAACTGA 58.863 43.478 0.00 0.00 0.00 3.41
23 24 3.885297 ACAACATTCTCACCCTGAAACTG 59.115 43.478 0.00 0.00 0.00 3.16
24 25 3.885297 CACAACATTCTCACCCTGAAACT 59.115 43.478 0.00 0.00 0.00 2.66
25 26 3.550842 GCACAACATTCTCACCCTGAAAC 60.551 47.826 0.00 0.00 0.00 2.78
26 27 2.622942 GCACAACATTCTCACCCTGAAA 59.377 45.455 0.00 0.00 0.00 2.69
27 28 2.229792 GCACAACATTCTCACCCTGAA 58.770 47.619 0.00 0.00 0.00 3.02
28 29 1.545428 GGCACAACATTCTCACCCTGA 60.545 52.381 0.00 0.00 0.00 3.86
29 30 0.883833 GGCACAACATTCTCACCCTG 59.116 55.000 0.00 0.00 0.00 4.45
30 31 0.773644 AGGCACAACATTCTCACCCT 59.226 50.000 0.00 0.00 0.00 4.34
31 32 0.883833 CAGGCACAACATTCTCACCC 59.116 55.000 0.00 0.00 0.00 4.61
32 33 1.808945 CTCAGGCACAACATTCTCACC 59.191 52.381 0.00 0.00 0.00 4.02
33 34 1.198637 GCTCAGGCACAACATTCTCAC 59.801 52.381 0.00 0.00 38.54 3.51
34 35 1.202794 TGCTCAGGCACAACATTCTCA 60.203 47.619 0.00 0.00 44.28 3.27
35 36 1.527034 TGCTCAGGCACAACATTCTC 58.473 50.000 0.00 0.00 44.28 2.87
36 37 3.731716 TGCTCAGGCACAACATTCT 57.268 47.368 0.00 0.00 44.28 2.40
46 47 2.203181 GCTCCTCCATGCTCAGGC 60.203 66.667 0.00 0.00 39.26 4.85
47 48 2.108566 CGCTCCTCCATGCTCAGG 59.891 66.667 0.00 0.00 0.00 3.86
48 49 2.108566 CCGCTCCTCCATGCTCAG 59.891 66.667 0.00 0.00 0.00 3.35
49 50 4.166888 GCCGCTCCTCCATGCTCA 62.167 66.667 0.00 0.00 0.00 4.26
50 51 3.687321 TTGCCGCTCCTCCATGCTC 62.687 63.158 0.00 0.00 0.00 4.26
51 52 3.720601 TTGCCGCTCCTCCATGCT 61.721 61.111 0.00 0.00 0.00 3.79
52 53 3.512516 GTTGCCGCTCCTCCATGC 61.513 66.667 0.00 0.00 0.00 4.06
53 54 3.197790 CGTTGCCGCTCCTCCATG 61.198 66.667 0.00 0.00 0.00 3.66
54 55 2.748058 AAACGTTGCCGCTCCTCCAT 62.748 55.000 0.00 0.00 37.70 3.41
55 56 3.469863 AAACGTTGCCGCTCCTCCA 62.470 57.895 0.00 0.00 37.70 3.86
56 57 2.668550 AAACGTTGCCGCTCCTCC 60.669 61.111 0.00 0.00 37.70 4.30
57 58 1.503818 TTCAAACGTTGCCGCTCCTC 61.504 55.000 0.00 0.00 37.70 3.71
58 59 1.525077 TTCAAACGTTGCCGCTCCT 60.525 52.632 0.00 0.00 37.70 3.69
59 60 1.370051 GTTCAAACGTTGCCGCTCC 60.370 57.895 0.00 0.00 37.70 4.70
60 61 0.657368 CTGTTCAAACGTTGCCGCTC 60.657 55.000 0.00 0.00 37.70 5.03
61 62 1.355210 CTGTTCAAACGTTGCCGCT 59.645 52.632 0.00 0.00 37.70 5.52
62 63 0.524604 AACTGTTCAAACGTTGCCGC 60.525 50.000 0.00 0.00 37.70 6.53
63 64 1.202087 TGAACTGTTCAAACGTTGCCG 60.202 47.619 20.14 0.00 36.59 5.69
64 65 2.182014 GTGAACTGTTCAAACGTTGCC 58.818 47.619 23.55 6.31 42.15 4.52
65 66 2.182014 GGTGAACTGTTCAAACGTTGC 58.818 47.619 23.55 10.11 42.15 4.17
66 67 2.162608 TGGGTGAACTGTTCAAACGTTG 59.837 45.455 23.55 0.00 42.15 4.10
67 68 2.438411 TGGGTGAACTGTTCAAACGTT 58.562 42.857 23.55 0.00 42.15 3.99
68 69 2.116827 TGGGTGAACTGTTCAAACGT 57.883 45.000 23.55 0.00 42.15 3.99
69 70 3.708563 ATTGGGTGAACTGTTCAAACG 57.291 42.857 23.55 0.00 42.15 3.60
70 71 5.415221 TGAAATTGGGTGAACTGTTCAAAC 58.585 37.500 23.55 18.64 42.15 2.93
71 72 5.667539 TGAAATTGGGTGAACTGTTCAAA 57.332 34.783 23.55 15.23 42.15 2.69
72 73 5.362143 TGATGAAATTGGGTGAACTGTTCAA 59.638 36.000 23.55 9.72 42.15 2.69
73 74 4.892345 TGATGAAATTGGGTGAACTGTTCA 59.108 37.500 18.69 18.69 37.33 3.18
74 75 5.452078 TGATGAAATTGGGTGAACTGTTC 57.548 39.130 13.49 13.49 0.00 3.18
75 76 5.539574 TCATGATGAAATTGGGTGAACTGTT 59.460 36.000 0.00 0.00 0.00 3.16
76 77 5.047802 GTCATGATGAAATTGGGTGAACTGT 60.048 40.000 0.00 0.00 0.00 3.55
77 78 5.047872 TGTCATGATGAAATTGGGTGAACTG 60.048 40.000 0.00 0.00 0.00 3.16
78 79 5.078949 TGTCATGATGAAATTGGGTGAACT 58.921 37.500 0.00 0.00 0.00 3.01
79 80 5.389859 TGTCATGATGAAATTGGGTGAAC 57.610 39.130 0.00 0.00 0.00 3.18
80 81 5.624967 GCATGTCATGATGAAATTGGGTGAA 60.625 40.000 17.24 0.00 0.00 3.18
81 82 4.142116 GCATGTCATGATGAAATTGGGTGA 60.142 41.667 17.24 0.00 0.00 4.02
82 83 4.116961 GCATGTCATGATGAAATTGGGTG 58.883 43.478 17.24 0.00 0.00 4.61
83 84 3.181484 CGCATGTCATGATGAAATTGGGT 60.181 43.478 17.24 0.00 0.00 4.51
84 85 3.181484 ACGCATGTCATGATGAAATTGGG 60.181 43.478 17.24 6.39 0.00 4.12
85 86 3.794564 CACGCATGTCATGATGAAATTGG 59.205 43.478 17.24 0.00 0.00 3.16
86 87 4.664188 TCACGCATGTCATGATGAAATTG 58.336 39.130 17.24 0.00 0.00 2.32
87 88 4.968812 TCACGCATGTCATGATGAAATT 57.031 36.364 17.24 0.00 0.00 1.82
88 89 5.066764 TCAATCACGCATGTCATGATGAAAT 59.933 36.000 17.24 9.36 33.37 2.17
89 90 4.395542 TCAATCACGCATGTCATGATGAAA 59.604 37.500 17.24 0.00 33.37 2.69
90 91 3.940221 TCAATCACGCATGTCATGATGAA 59.060 39.130 17.24 2.36 33.37 2.57
91 92 3.533547 TCAATCACGCATGTCATGATGA 58.466 40.909 17.24 17.50 33.37 2.92
92 93 3.558418 TCTCAATCACGCATGTCATGATG 59.442 43.478 17.24 13.05 33.37 3.07
93 94 3.800531 TCTCAATCACGCATGTCATGAT 58.199 40.909 17.24 0.00 34.52 2.45
94 95 3.249986 TCTCAATCACGCATGTCATGA 57.750 42.857 17.24 0.00 0.00 3.07
95 96 4.093514 GTTTCTCAATCACGCATGTCATG 58.906 43.478 8.56 8.56 0.00 3.07
96 97 4.005650 AGTTTCTCAATCACGCATGTCAT 58.994 39.130 0.00 0.00 0.00 3.06
97 98 3.402110 AGTTTCTCAATCACGCATGTCA 58.598 40.909 0.00 0.00 0.00 3.58
98 99 3.433274 TGAGTTTCTCAATCACGCATGTC 59.567 43.478 0.00 0.00 37.57 3.06
99 100 3.187227 GTGAGTTTCTCAATCACGCATGT 59.813 43.478 0.88 0.00 42.46 3.21
100 101 3.740590 GTGAGTTTCTCAATCACGCATG 58.259 45.455 0.88 0.00 42.46 4.06
105 106 2.543848 TGCACGTGAGTTTCTCAATCAC 59.456 45.455 22.23 0.00 46.40 3.06
106 107 2.832563 TGCACGTGAGTTTCTCAATCA 58.167 42.857 22.23 0.00 46.40 2.57
107 108 3.248602 AGTTGCACGTGAGTTTCTCAATC 59.751 43.478 22.23 6.94 46.40 2.67
108 109 3.002656 CAGTTGCACGTGAGTTTCTCAAT 59.997 43.478 22.23 0.16 46.40 2.57
109 110 2.351418 CAGTTGCACGTGAGTTTCTCAA 59.649 45.455 22.23 9.11 46.40 3.02
110 111 1.933181 CAGTTGCACGTGAGTTTCTCA 59.067 47.619 22.23 2.21 46.40 3.27
111 112 1.333258 GCAGTTGCACGTGAGTTTCTC 60.333 52.381 22.23 0.00 46.40 2.87
112 113 0.657840 GCAGTTGCACGTGAGTTTCT 59.342 50.000 22.23 6.54 46.40 2.52
113 114 3.148823 GCAGTTGCACGTGAGTTTC 57.851 52.632 22.23 0.69 46.40 2.78
124 125 4.272991 TCAACCAAATCATTTTGCAGTTGC 59.727 37.500 12.05 0.00 40.72 4.17
125 126 5.524646 ACTCAACCAAATCATTTTGCAGTTG 59.475 36.000 11.23 11.23 41.43 3.16
126 127 5.673514 ACTCAACCAAATCATTTTGCAGTT 58.326 33.333 0.00 0.00 40.77 3.16
127 128 5.280654 ACTCAACCAAATCATTTTGCAGT 57.719 34.783 0.00 0.00 40.77 4.40
128 129 9.027129 CATATACTCAACCAAATCATTTTGCAG 57.973 33.333 0.00 0.00 40.77 4.41
129 130 8.530311 ACATATACTCAACCAAATCATTTTGCA 58.470 29.630 0.00 0.00 40.77 4.08
130 131 8.810427 CACATATACTCAACCAAATCATTTTGC 58.190 33.333 0.00 0.00 40.77 3.68
131 132 9.304731 CCACATATACTCAACCAAATCATTTTG 57.695 33.333 0.00 0.00 41.59 2.44
132 133 8.477256 CCCACATATACTCAACCAAATCATTTT 58.523 33.333 0.00 0.00 0.00 1.82
133 134 7.417797 GCCCACATATACTCAACCAAATCATTT 60.418 37.037 0.00 0.00 0.00 2.32
134 135 6.040842 GCCCACATATACTCAACCAAATCATT 59.959 38.462 0.00 0.00 0.00 2.57
135 136 5.536161 GCCCACATATACTCAACCAAATCAT 59.464 40.000 0.00 0.00 0.00 2.45
136 137 4.887071 GCCCACATATACTCAACCAAATCA 59.113 41.667 0.00 0.00 0.00 2.57
137 138 5.133221 AGCCCACATATACTCAACCAAATC 58.867 41.667 0.00 0.00 0.00 2.17
138 139 5.129368 AGCCCACATATACTCAACCAAAT 57.871 39.130 0.00 0.00 0.00 2.32
139 140 4.018870 TGAGCCCACATATACTCAACCAAA 60.019 41.667 0.00 0.00 36.27 3.28
140 141 3.521531 TGAGCCCACATATACTCAACCAA 59.478 43.478 0.00 0.00 36.27 3.67
141 142 3.111484 TGAGCCCACATATACTCAACCA 58.889 45.455 0.00 0.00 36.27 3.67
142 143 3.467803 GTGAGCCCACATATACTCAACC 58.532 50.000 0.00 0.00 40.61 3.77
143 144 3.123804 CGTGAGCCCACATATACTCAAC 58.876 50.000 0.00 0.00 43.34 3.18
144 145 2.764010 ACGTGAGCCCACATATACTCAA 59.236 45.455 0.00 0.00 43.34 3.02
145 146 2.384828 ACGTGAGCCCACATATACTCA 58.615 47.619 0.00 0.00 43.34 3.41
146 147 3.123804 CAACGTGAGCCCACATATACTC 58.876 50.000 0.00 0.00 43.34 2.59
147 148 2.764010 TCAACGTGAGCCCACATATACT 59.236 45.455 0.00 0.00 43.34 2.12
148 149 2.864343 GTCAACGTGAGCCCACATATAC 59.136 50.000 0.00 0.00 43.34 1.47
149 150 2.498078 TGTCAACGTGAGCCCACATATA 59.502 45.455 0.00 0.00 43.34 0.86
150 151 1.277842 TGTCAACGTGAGCCCACATAT 59.722 47.619 0.00 0.00 43.34 1.78
151 152 0.682292 TGTCAACGTGAGCCCACATA 59.318 50.000 0.00 0.00 43.34 2.29
152 153 0.179032 TTGTCAACGTGAGCCCACAT 60.179 50.000 0.00 0.00 43.34 3.21
153 154 1.092921 GTTGTCAACGTGAGCCCACA 61.093 55.000 0.00 0.00 43.34 4.17
154 155 1.647084 GTTGTCAACGTGAGCCCAC 59.353 57.895 0.00 0.00 39.86 4.61
155 156 1.525077 GGTTGTCAACGTGAGCCCA 60.525 57.895 9.57 0.00 0.00 5.36
156 157 1.098712 TTGGTTGTCAACGTGAGCCC 61.099 55.000 9.57 0.00 0.00 5.19
157 158 0.951558 ATTGGTTGTCAACGTGAGCC 59.048 50.000 9.57 0.00 38.31 4.70
158 159 3.064207 TCTATTGGTTGTCAACGTGAGC 58.936 45.455 9.57 0.00 38.31 4.26
159 160 4.690748 ACATCTATTGGTTGTCAACGTGAG 59.309 41.667 9.57 4.77 38.31 3.51
160 161 4.637276 ACATCTATTGGTTGTCAACGTGA 58.363 39.130 9.57 3.99 38.31 4.35
161 162 6.535150 AGATACATCTATTGGTTGTCAACGTG 59.465 38.462 9.57 3.03 38.31 4.49
162 163 6.640518 AGATACATCTATTGGTTGTCAACGT 58.359 36.000 9.57 2.33 38.31 3.99
163 164 7.492669 AGAAGATACATCTATTGGTTGTCAACG 59.507 37.037 9.57 0.00 35.55 4.10
164 165 8.723942 AGAAGATACATCTATTGGTTGTCAAC 57.276 34.615 7.20 7.20 35.55 3.18
165 166 9.739276 AAAGAAGATACATCTATTGGTTGTCAA 57.261 29.630 0.00 0.00 36.54 3.18
176 177 9.464714 GCAAGTCGAATAAAGAAGATACATCTA 57.535 33.333 0.00 0.00 35.76 1.98
177 178 7.981789 TGCAAGTCGAATAAAGAAGATACATCT 59.018 33.333 0.00 0.00 39.22 2.90
178 179 8.131455 TGCAAGTCGAATAAAGAAGATACATC 57.869 34.615 0.00 0.00 0.00 3.06
179 180 8.492673 TTGCAAGTCGAATAAAGAAGATACAT 57.507 30.769 0.00 0.00 0.00 2.29
180 181 7.899178 TTGCAAGTCGAATAAAGAAGATACA 57.101 32.000 0.00 0.00 0.00 2.29
181 182 9.052080 GTTTTGCAAGTCGAATAAAGAAGATAC 57.948 33.333 0.00 0.00 0.00 2.24
182 183 8.999431 AGTTTTGCAAGTCGAATAAAGAAGATA 58.001 29.630 0.00 0.00 0.00 1.98
183 184 7.875971 AGTTTTGCAAGTCGAATAAAGAAGAT 58.124 30.769 0.00 0.00 0.00 2.40
184 185 7.259290 AGTTTTGCAAGTCGAATAAAGAAGA 57.741 32.000 0.00 0.00 0.00 2.87
185 186 9.055248 CATAGTTTTGCAAGTCGAATAAAGAAG 57.945 33.333 0.00 0.00 0.00 2.85
186 187 8.564574 ACATAGTTTTGCAAGTCGAATAAAGAA 58.435 29.630 0.00 0.00 0.00 2.52
187 188 8.015087 CACATAGTTTTGCAAGTCGAATAAAGA 58.985 33.333 0.00 0.00 0.00 2.52
188 189 8.015087 TCACATAGTTTTGCAAGTCGAATAAAG 58.985 33.333 0.00 0.00 0.00 1.85
189 190 7.866729 TCACATAGTTTTGCAAGTCGAATAAA 58.133 30.769 0.00 0.00 0.00 1.40
190 191 7.386573 TCTCACATAGTTTTGCAAGTCGAATAA 59.613 33.333 0.00 0.00 0.00 1.40
191 192 6.871492 TCTCACATAGTTTTGCAAGTCGAATA 59.129 34.615 0.00 0.00 0.00 1.75
192 193 5.700832 TCTCACATAGTTTTGCAAGTCGAAT 59.299 36.000 0.00 0.00 0.00 3.34
193 194 5.050363 GTCTCACATAGTTTTGCAAGTCGAA 60.050 40.000 0.00 0.00 0.00 3.71
194 195 4.447724 GTCTCACATAGTTTTGCAAGTCGA 59.552 41.667 0.00 0.00 0.00 4.20
195 196 4.211164 TGTCTCACATAGTTTTGCAAGTCG 59.789 41.667 0.00 0.00 0.00 4.18
196 197 5.673337 TGTCTCACATAGTTTTGCAAGTC 57.327 39.130 0.00 0.00 0.00 3.01
197 198 6.639632 AATGTCTCACATAGTTTTGCAAGT 57.360 33.333 0.00 0.00 37.97 3.16
198 199 7.935338 AAAATGTCTCACATAGTTTTGCAAG 57.065 32.000 0.00 0.00 37.97 4.01
199 200 9.979578 ATAAAAATGTCTCACATAGTTTTGCAA 57.020 25.926 0.00 0.00 37.97 4.08
200 201 9.979578 AATAAAAATGTCTCACATAGTTTTGCA 57.020 25.926 8.38 0.00 37.97 4.08
225 226 9.771534 AGCATAGTTTTACAAGCCAAATAAAAA 57.228 25.926 0.00 0.00 31.47 1.94
230 231 9.942850 AAAATAGCATAGTTTTACAAGCCAAAT 57.057 25.926 0.00 0.00 34.96 2.32
243 244 9.783256 GTTTGAACCGAATAAAATAGCATAGTT 57.217 29.630 0.00 0.00 0.00 2.24
244 245 9.174166 AGTTTGAACCGAATAAAATAGCATAGT 57.826 29.630 0.00 0.00 0.00 2.12
247 248 9.950680 CATAGTTTGAACCGAATAAAATAGCAT 57.049 29.630 0.00 0.00 0.00 3.79
248 249 8.952278 ACATAGTTTGAACCGAATAAAATAGCA 58.048 29.630 0.00 0.00 0.00 3.49
249 250 9.783256 AACATAGTTTGAACCGAATAAAATAGC 57.217 29.630 0.00 0.00 0.00 2.97
256 257 8.185505 GCCAAATAACATAGTTTGAACCGAATA 58.814 33.333 0.00 0.00 37.48 1.75
257 258 7.033185 GCCAAATAACATAGTTTGAACCGAAT 58.967 34.615 0.00 0.00 37.48 3.34
258 259 6.207810 AGCCAAATAACATAGTTTGAACCGAA 59.792 34.615 0.00 0.00 37.48 4.30
259 260 5.708230 AGCCAAATAACATAGTTTGAACCGA 59.292 36.000 0.00 0.00 37.48 4.69
260 261 5.949735 AGCCAAATAACATAGTTTGAACCG 58.050 37.500 0.00 0.00 37.48 4.44
261 262 9.301153 CAATAGCCAAATAACATAGTTTGAACC 57.699 33.333 0.00 0.00 37.48 3.62
262 263 9.855021 ACAATAGCCAAATAACATAGTTTGAAC 57.145 29.630 0.00 0.00 37.48 3.18
271 272 9.664332 TGCATTTAAACAATAGCCAAATAACAT 57.336 25.926 0.00 0.00 0.00 2.71
272 273 9.494271 TTGCATTTAAACAATAGCCAAATAACA 57.506 25.926 0.00 0.00 0.00 2.41
277 278 9.060347 TGATTTTGCATTTAAACAATAGCCAAA 57.940 25.926 0.00 0.00 0.00 3.28
278 279 8.613060 TGATTTTGCATTTAAACAATAGCCAA 57.387 26.923 0.00 0.00 0.00 4.52
279 280 8.613060 TTGATTTTGCATTTAAACAATAGCCA 57.387 26.923 0.00 0.00 0.00 4.75
280 281 9.493206 CATTGATTTTGCATTTAAACAATAGCC 57.507 29.630 9.99 0.00 0.00 3.93
281 282 9.002080 GCATTGATTTTGCATTTAAACAATAGC 57.998 29.630 9.99 11.28 39.90 2.97
295 296 4.212636 AGCTCACTTTTGCATTGATTTTGC 59.787 37.500 0.00 0.00 40.55 3.68
296 297 5.917541 AGCTCACTTTTGCATTGATTTTG 57.082 34.783 0.00 0.00 0.00 2.44
297 298 7.544566 CAGATAGCTCACTTTTGCATTGATTTT 59.455 33.333 0.00 0.00 0.00 1.82
298 299 7.033791 CAGATAGCTCACTTTTGCATTGATTT 58.966 34.615 0.00 0.00 0.00 2.17
299 300 6.152323 ACAGATAGCTCACTTTTGCATTGATT 59.848 34.615 0.00 0.00 0.00 2.57
300 301 5.651139 ACAGATAGCTCACTTTTGCATTGAT 59.349 36.000 0.00 0.00 0.00 2.57
301 302 5.005740 ACAGATAGCTCACTTTTGCATTGA 58.994 37.500 0.00 0.00 0.00 2.57
302 303 5.306532 ACAGATAGCTCACTTTTGCATTG 57.693 39.130 0.00 0.00 0.00 2.82
303 304 5.474532 TCAACAGATAGCTCACTTTTGCATT 59.525 36.000 11.59 0.00 0.00 3.56
304 305 5.005740 TCAACAGATAGCTCACTTTTGCAT 58.994 37.500 11.59 0.00 0.00 3.96
305 306 4.388485 TCAACAGATAGCTCACTTTTGCA 58.612 39.130 11.59 0.00 0.00 4.08
306 307 5.362556 TTCAACAGATAGCTCACTTTTGC 57.637 39.130 11.59 0.00 0.00 3.68
307 308 9.499585 CATATTTCAACAGATAGCTCACTTTTG 57.500 33.333 10.67 10.67 0.00 2.44
308 309 8.680903 CCATATTTCAACAGATAGCTCACTTTT 58.319 33.333 0.00 0.00 0.00 2.27
309 310 7.201767 GCCATATTTCAACAGATAGCTCACTTT 60.202 37.037 0.00 0.00 0.00 2.66
310 311 6.261826 GCCATATTTCAACAGATAGCTCACTT 59.738 38.462 0.00 0.00 0.00 3.16
311 312 5.762218 GCCATATTTCAACAGATAGCTCACT 59.238 40.000 0.00 0.00 0.00 3.41
312 313 5.333645 CGCCATATTTCAACAGATAGCTCAC 60.334 44.000 0.00 0.00 0.00 3.51
313 314 4.751600 CGCCATATTTCAACAGATAGCTCA 59.248 41.667 0.00 0.00 0.00 4.26
314 315 4.153117 CCGCCATATTTCAACAGATAGCTC 59.847 45.833 0.00 0.00 0.00 4.09
315 316 4.067896 CCGCCATATTTCAACAGATAGCT 58.932 43.478 0.00 0.00 0.00 3.32
316 317 3.365364 GCCGCCATATTTCAACAGATAGC 60.365 47.826 0.00 0.00 0.00 2.97
317 318 3.189287 GGCCGCCATATTTCAACAGATAG 59.811 47.826 3.91 0.00 0.00 2.08
318 319 3.146066 GGCCGCCATATTTCAACAGATA 58.854 45.455 3.91 0.00 0.00 1.98
319 320 1.956477 GGCCGCCATATTTCAACAGAT 59.044 47.619 3.91 0.00 0.00 2.90
320 321 1.340502 TGGCCGCCATATTTCAACAGA 60.341 47.619 8.43 0.00 0.00 3.41
321 322 1.066002 CTGGCCGCCATATTTCAACAG 59.934 52.381 13.86 0.00 30.82 3.16
322 323 1.102154 CTGGCCGCCATATTTCAACA 58.898 50.000 13.86 0.00 30.82 3.33
323 324 0.249031 GCTGGCCGCCATATTTCAAC 60.249 55.000 13.86 0.00 30.82 3.18
324 325 0.682532 TGCTGGCCGCCATATTTCAA 60.683 50.000 13.86 0.00 38.05 2.69
325 326 1.077140 TGCTGGCCGCCATATTTCA 60.077 52.632 13.86 3.62 38.05 2.69
326 327 1.656441 CTGCTGGCCGCCATATTTC 59.344 57.895 13.86 0.94 38.05 2.17
327 328 1.829533 CCTGCTGGCCGCCATATTT 60.830 57.895 13.86 0.00 38.05 1.40
328 329 2.203394 CCTGCTGGCCGCCATATT 60.203 61.111 13.86 0.00 38.05 1.28
339 340 4.015406 TACCGGTGTGGCCTGCTG 62.015 66.667 19.93 0.00 43.94 4.41
340 341 4.016706 GTACCGGTGTGGCCTGCT 62.017 66.667 19.93 0.00 43.94 4.24
341 342 2.246761 TATGTACCGGTGTGGCCTGC 62.247 60.000 19.93 0.00 43.94 4.85
342 343 0.468226 ATATGTACCGGTGTGGCCTG 59.532 55.000 19.93 0.00 43.94 4.85
343 344 0.468226 CATATGTACCGGTGTGGCCT 59.532 55.000 19.93 0.47 43.94 5.19
344 345 0.534203 CCATATGTACCGGTGTGGCC 60.534 60.000 19.93 0.00 43.94 5.36
345 346 0.534203 CCCATATGTACCGGTGTGGC 60.534 60.000 19.93 5.32 43.94 5.01
346 347 0.834612 ACCCATATGTACCGGTGTGG 59.165 55.000 19.93 16.25 46.41 4.17
347 348 1.537348 CGACCCATATGTACCGGTGTG 60.537 57.143 19.93 7.99 0.00 3.82
348 349 0.748450 CGACCCATATGTACCGGTGT 59.252 55.000 19.93 2.90 0.00 4.16
349 350 1.034356 TCGACCCATATGTACCGGTG 58.966 55.000 19.93 0.00 0.00 4.94
350 351 1.035139 GTCGACCCATATGTACCGGT 58.965 55.000 13.98 13.98 0.00 5.28
351 352 0.039798 CGTCGACCCATATGTACCGG 60.040 60.000 10.58 0.00 0.00 5.28
352 353 0.662374 GCGTCGACCCATATGTACCG 60.662 60.000 10.58 2.08 0.00 4.02
353 354 0.662374 CGCGTCGACCCATATGTACC 60.662 60.000 10.58 0.00 0.00 3.34
354 355 0.029834 ACGCGTCGACCCATATGTAC 59.970 55.000 5.58 0.00 0.00 2.90
355 356 0.740149 AACGCGTCGACCCATATGTA 59.260 50.000 14.44 0.00 0.00 2.29
356 357 0.804544 CAACGCGTCGACCCATATGT 60.805 55.000 14.44 0.00 0.00 2.29
357 358 1.487452 CCAACGCGTCGACCCATATG 61.487 60.000 14.44 3.04 0.00 1.78
358 359 1.227147 CCAACGCGTCGACCCATAT 60.227 57.895 14.44 0.00 0.00 1.78
359 360 2.182284 CCAACGCGTCGACCCATA 59.818 61.111 14.44 0.00 0.00 2.74
360 361 4.752879 CCCAACGCGTCGACCCAT 62.753 66.667 14.44 0.00 0.00 4.00
377 378 2.063541 GATATGGGTTGGCAGCGTGC 62.064 60.000 0.00 1.92 44.08 5.34
378 379 0.464373 AGATATGGGTTGGCAGCGTG 60.464 55.000 0.00 0.00 0.00 5.34
379 380 1.128200 TAGATATGGGTTGGCAGCGT 58.872 50.000 0.00 0.00 0.00 5.07
380 381 2.254546 TTAGATATGGGTTGGCAGCG 57.745 50.000 0.00 0.00 0.00 5.18
381 382 3.699038 TGTTTTAGATATGGGTTGGCAGC 59.301 43.478 0.00 0.00 0.00 5.25
382 383 4.339247 CCTGTTTTAGATATGGGTTGGCAG 59.661 45.833 0.00 0.00 0.00 4.85
383 384 4.277476 CCTGTTTTAGATATGGGTTGGCA 58.723 43.478 0.00 0.00 0.00 4.92
384 385 3.636764 CCCTGTTTTAGATATGGGTTGGC 59.363 47.826 0.00 0.00 0.00 4.52
385 386 3.636764 GCCCTGTTTTAGATATGGGTTGG 59.363 47.826 0.00 0.00 37.09 3.77
386 387 3.315191 CGCCCTGTTTTAGATATGGGTTG 59.685 47.826 0.00 0.00 37.09 3.77
387 388 3.551846 CGCCCTGTTTTAGATATGGGTT 58.448 45.455 0.00 0.00 37.09 4.11
388 389 2.158667 CCGCCCTGTTTTAGATATGGGT 60.159 50.000 0.00 0.00 37.09 4.51
389 390 2.105821 TCCGCCCTGTTTTAGATATGGG 59.894 50.000 0.00 0.00 37.76 4.00
390 391 3.139077 GTCCGCCCTGTTTTAGATATGG 58.861 50.000 0.00 0.00 0.00 2.74
391 392 2.800544 CGTCCGCCCTGTTTTAGATATG 59.199 50.000 0.00 0.00 0.00 1.78
392 393 2.805657 GCGTCCGCCCTGTTTTAGATAT 60.806 50.000 0.00 0.00 34.56 1.63
393 394 1.472026 GCGTCCGCCCTGTTTTAGATA 60.472 52.381 0.00 0.00 34.56 1.98
394 395 0.743345 GCGTCCGCCCTGTTTTAGAT 60.743 55.000 0.00 0.00 34.56 1.98
395 396 1.375013 GCGTCCGCCCTGTTTTAGA 60.375 57.895 0.00 0.00 34.56 2.10
396 397 3.174788 GCGTCCGCCCTGTTTTAG 58.825 61.111 0.00 0.00 34.56 1.85
422 423 2.855880 TTATCCGTTTGGGTCGGCCG 62.856 60.000 22.12 22.12 46.49 6.13
423 424 0.677414 TTTATCCGTTTGGGTCGGCC 60.677 55.000 0.00 0.00 46.49 6.13
424 425 1.166989 TTTTATCCGTTTGGGTCGGC 58.833 50.000 0.00 0.00 46.49 5.54
441 442 6.212955 ACGGATGATGATTTCGTTTGTTTTT 58.787 32.000 0.00 0.00 0.00 1.94
442 443 5.768317 ACGGATGATGATTTCGTTTGTTTT 58.232 33.333 0.00 0.00 0.00 2.43
443 444 5.371115 ACGGATGATGATTTCGTTTGTTT 57.629 34.783 0.00 0.00 0.00 2.83
444 445 5.371115 AACGGATGATGATTTCGTTTGTT 57.629 34.783 0.00 0.00 40.47 2.83
448 449 3.128589 CCCAAACGGATGATGATTTCGTT 59.871 43.478 0.00 0.00 44.34 3.85
449 450 2.682856 CCCAAACGGATGATGATTTCGT 59.317 45.455 0.00 0.00 35.48 3.85
450 451 2.682856 ACCCAAACGGATGATGATTTCG 59.317 45.455 0.00 0.00 34.64 3.46
451 452 3.242739 CGACCCAAACGGATGATGATTTC 60.243 47.826 0.00 0.00 34.64 2.17
452 453 2.682856 CGACCCAAACGGATGATGATTT 59.317 45.455 0.00 0.00 34.64 2.17
453 454 2.288666 CGACCCAAACGGATGATGATT 58.711 47.619 0.00 0.00 34.64 2.57
454 455 1.953559 CGACCCAAACGGATGATGAT 58.046 50.000 0.00 0.00 34.64 2.45
455 456 3.451793 CGACCCAAACGGATGATGA 57.548 52.632 0.00 0.00 34.64 2.92
469 470 4.324991 AACTCCAACGGGCCGACC 62.325 66.667 35.78 0.00 0.00 4.79
470 471 3.047877 CAACTCCAACGGGCCGAC 61.048 66.667 35.78 0.00 0.00 4.79
473 474 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
474 475 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
475 476 2.280628 GATAAGAGCAACTCCAACGGG 58.719 52.381 0.00 0.00 0.00 5.28
476 477 2.972625 TGATAAGAGCAACTCCAACGG 58.027 47.619 0.00 0.00 0.00 4.44
477 478 6.042777 TCTATTGATAAGAGCAACTCCAACG 58.957 40.000 0.00 0.00 0.00 4.10
478 479 7.268586 TCTCTATTGATAAGAGCAACTCCAAC 58.731 38.462 0.00 0.00 40.30 3.77
479 480 7.423844 TCTCTATTGATAAGAGCAACTCCAA 57.576 36.000 0.00 0.00 40.30 3.53
480 481 7.124901 ACTTCTCTATTGATAAGAGCAACTCCA 59.875 37.037 8.81 0.00 40.30 3.86
481 482 7.496747 ACTTCTCTATTGATAAGAGCAACTCC 58.503 38.462 8.81 0.00 40.30 3.85
482 483 8.940768 AACTTCTCTATTGATAAGAGCAACTC 57.059 34.615 8.81 0.00 40.30 3.01
483 484 9.732130 AAAACTTCTCTATTGATAAGAGCAACT 57.268 29.630 8.81 0.00 40.30 3.16
484 485 9.980780 GAAAACTTCTCTATTGATAAGAGCAAC 57.019 33.333 8.81 0.00 40.30 4.17
485 486 9.167311 GGAAAACTTCTCTATTGATAAGAGCAA 57.833 33.333 8.81 0.00 40.30 3.91
486 487 8.321353 TGGAAAACTTCTCTATTGATAAGAGCA 58.679 33.333 8.81 0.00 40.30 4.26
487 488 8.723942 TGGAAAACTTCTCTATTGATAAGAGC 57.276 34.615 8.81 0.00 40.30 4.09
496 497 5.240844 CCGGTGTTTGGAAAACTTCTCTATT 59.759 40.000 0.00 0.00 0.00 1.73
527 528 7.538678 ACAAAGAAAACAATGTTATCATCGCTC 59.461 33.333 0.00 0.00 32.56 5.03
584 585 4.657436 AAACGCACCCTTTGTAAATTCA 57.343 36.364 0.00 0.00 0.00 2.57
596 597 4.783667 TGTGTCCTAAACGCACCC 57.216 55.556 0.00 0.00 43.33 4.61
612 613 5.107026 GCAATAAGCAGAGCACATCTAGATG 60.107 44.000 27.63 27.63 44.79 2.90
613 614 4.996122 GCAATAAGCAGAGCACATCTAGAT 59.004 41.667 0.00 0.00 44.79 1.98
614 615 4.375272 GCAATAAGCAGAGCACATCTAGA 58.625 43.478 0.00 0.00 44.79 2.43
615 616 4.728917 GCAATAAGCAGAGCACATCTAG 57.271 45.455 0.00 0.00 44.79 2.43
628 629 7.308782 ACACTTACTTAGATGTGCAATAAGC 57.691 36.000 0.00 0.00 45.96 3.09
632 633 9.102757 CTTGATACACTTACTTAGATGTGCAAT 57.897 33.333 0.00 0.00 34.14 3.56
633 634 7.064609 GCTTGATACACTTACTTAGATGTGCAA 59.935 37.037 0.00 0.00 34.14 4.08
634 635 6.535150 GCTTGATACACTTACTTAGATGTGCA 59.465 38.462 0.00 0.00 34.14 4.57
635 636 6.535150 TGCTTGATACACTTACTTAGATGTGC 59.465 38.462 0.00 0.00 34.14 4.57
636 637 8.654230 ATGCTTGATACACTTACTTAGATGTG 57.346 34.615 0.00 0.00 36.59 3.21
642 643 9.713713 TGTGTTTATGCTTGATACACTTACTTA 57.286 29.630 0.00 0.00 39.73 2.24
643 644 8.615878 TGTGTTTATGCTTGATACACTTACTT 57.384 30.769 0.00 0.00 39.73 2.24
644 645 8.615878 TTGTGTTTATGCTTGATACACTTACT 57.384 30.769 0.00 0.00 39.73 2.24
645 646 9.672086 TTTTGTGTTTATGCTTGATACACTTAC 57.328 29.630 0.00 0.00 39.73 2.34
712 713 9.797642 TGCACATCTAAATCCTATGTTATTGAT 57.202 29.630 0.00 0.00 31.60 2.57
713 714 9.625747 TTGCACATCTAAATCCTATGTTATTGA 57.374 29.630 0.00 0.00 31.60 2.57
718 719 9.632638 AAGTATTGCACATCTAAATCCTATGTT 57.367 29.630 0.00 0.00 31.60 2.71
722 723 9.725019 CCATAAGTATTGCACATCTAAATCCTA 57.275 33.333 0.00 0.00 0.00 2.94
723 724 7.175641 GCCATAAGTATTGCACATCTAAATCCT 59.824 37.037 0.00 0.00 0.00 3.24
724 725 7.040478 TGCCATAAGTATTGCACATCTAAATCC 60.040 37.037 0.00 0.00 30.49 3.01
725 726 7.874940 TGCCATAAGTATTGCACATCTAAATC 58.125 34.615 0.00 0.00 30.49 2.17
726 727 7.822161 TGCCATAAGTATTGCACATCTAAAT 57.178 32.000 0.00 0.00 30.49 1.40
730 731 8.797958 AGACGTGCCATAAGTATTGCACATCT 62.798 42.308 20.94 18.57 46.22 2.90
734 735 2.936498 AGACGTGCCATAAGTATTGCAC 59.064 45.455 14.49 14.49 46.12 4.57
735 736 2.935849 CAGACGTGCCATAAGTATTGCA 59.064 45.455 0.00 0.00 32.69 4.08
736 737 2.286418 GCAGACGTGCCATAAGTATTGC 60.286 50.000 0.00 0.00 44.72 3.56
737 738 3.592381 GCAGACGTGCCATAAGTATTG 57.408 47.619 0.00 0.00 44.72 1.90
756 757 8.599774 TGTTTTGTAAATCAGTTTTGCTAAAGC 58.400 29.630 0.00 0.00 36.16 3.51
758 759 9.092876 CCTGTTTTGTAAATCAGTTTTGCTAAA 57.907 29.630 12.08 0.00 34.33 1.85
759 760 7.708752 CCCTGTTTTGTAAATCAGTTTTGCTAA 59.291 33.333 12.08 0.00 35.14 3.09
760 761 7.206687 CCCTGTTTTGTAAATCAGTTTTGCTA 58.793 34.615 12.08 0.00 35.14 3.49
761 762 6.048509 CCCTGTTTTGTAAATCAGTTTTGCT 58.951 36.000 12.08 0.00 35.14 3.91
762 763 5.236263 CCCCTGTTTTGTAAATCAGTTTTGC 59.764 40.000 12.08 0.00 35.14 3.68
763 764 5.236263 GCCCCTGTTTTGTAAATCAGTTTTG 59.764 40.000 12.08 1.11 35.14 2.44
764 765 5.364778 GCCCCTGTTTTGTAAATCAGTTTT 58.635 37.500 12.08 0.00 35.14 2.43
765 766 4.202315 GGCCCCTGTTTTGTAAATCAGTTT 60.202 41.667 12.08 0.00 35.14 2.66
766 767 3.323691 GGCCCCTGTTTTGTAAATCAGTT 59.676 43.478 12.08 0.00 35.14 3.16
767 768 2.897326 GGCCCCTGTTTTGTAAATCAGT 59.103 45.455 12.08 0.00 35.14 3.41
768 769 2.094752 CGGCCCCTGTTTTGTAAATCAG 60.095 50.000 0.00 7.96 36.14 2.90
769 770 1.889829 CGGCCCCTGTTTTGTAAATCA 59.110 47.619 0.00 0.00 0.00 2.57
770 771 1.890489 ACGGCCCCTGTTTTGTAAATC 59.110 47.619 0.00 0.00 0.00 2.17
771 772 1.890489 GACGGCCCCTGTTTTGTAAAT 59.110 47.619 0.00 0.00 0.00 1.40
772 773 1.320507 GACGGCCCCTGTTTTGTAAA 58.679 50.000 0.00 0.00 0.00 2.01
773 774 0.885596 CGACGGCCCCTGTTTTGTAA 60.886 55.000 0.00 0.00 0.00 2.41
774 775 1.301874 CGACGGCCCCTGTTTTGTA 60.302 57.895 0.00 0.00 0.00 2.41
775 776 2.593436 CGACGGCCCCTGTTTTGT 60.593 61.111 0.00 0.00 0.00 2.83
776 777 4.038080 GCGACGGCCCCTGTTTTG 62.038 66.667 0.00 0.00 0.00 2.44
803 804 0.736325 CGACGTGAATTTCGAGGGCT 60.736 55.000 0.00 0.00 37.43 5.19
837 838 4.864334 CGTGCTGGATGCCCTCCC 62.864 72.222 0.30 0.00 44.23 4.30
885 886 2.621526 GGGCGATGGGATTAACGAATTT 59.378 45.455 0.00 0.00 0.00 1.82
933 939 2.939353 AAAGGGGACGGGGGAAGG 60.939 66.667 0.00 0.00 0.00 3.46
935 941 2.937136 GGAAAGGGGACGGGGGAA 60.937 66.667 0.00 0.00 0.00 3.97
1503 1951 2.922503 TCCTCCGCCTTGTGCAGA 60.923 61.111 0.00 0.00 41.33 4.26
1742 2198 5.063564 GCAGCTATCAACTACACAGGTAAAC 59.936 44.000 0.00 0.00 0.00 2.01
1766 2222 1.296755 ATTGCACACTCAGCTGCTCG 61.297 55.000 9.47 2.20 34.29 5.03
1801 2257 2.476619 CTGAACACTTCACATGACCGTC 59.523 50.000 0.00 0.00 35.46 4.79
1811 2267 5.697473 TGACAAACAAACTGAACACTTCA 57.303 34.783 0.00 0.00 38.17 3.02
1812 2268 9.944663 TTATATGACAAACAAACTGAACACTTC 57.055 29.630 0.00 0.00 0.00 3.01
1916 2372 1.494721 AGGGACTTCTGGAACTGCAAA 59.505 47.619 0.00 0.00 27.25 3.68
2070 2526 4.495679 CGCAAACTCTGTCAAGCAAACTAA 60.496 41.667 0.00 0.00 0.00 2.24
2078 2534 2.416547 CCATACCGCAAACTCTGTCAAG 59.583 50.000 0.00 0.00 0.00 3.02
2183 2639 5.291128 CGCAACTATAAACAGGGAACTACAG 59.709 44.000 0.00 0.00 40.21 2.74
2302 2758 0.768221 TCAGGCCAGGGTTGTCTCTT 60.768 55.000 5.01 0.00 0.00 2.85
2498 2964 5.646360 AGTACCTACCACCGAAATGATTTTG 59.354 40.000 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.