Multiple sequence alignment - TraesCS3D01G104800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G104800 chr3D 100.000 2870 0 0 1 2870 57179867 57176998 0.000000e+00 5301.0
1 TraesCS3D01G104800 chr3D 87.060 1391 105 25 753 2104 57335351 57336705 0.000000e+00 1502.0
2 TraesCS3D01G104800 chr3D 92.127 724 51 3 888 1608 57325149 57325869 0.000000e+00 1016.0
3 TraesCS3D01G104800 chr3D 82.249 1076 116 40 150 1172 57327921 57328974 0.000000e+00 859.0
4 TraesCS3D01G104800 chr3D 83.569 566 46 24 150 682 57334772 57335323 1.200000e-133 486.0
5 TraesCS3D01G104800 chr3D 90.079 252 18 5 1052 1300 57330383 57330630 1.280000e-83 320.0
6 TraesCS3D01G104800 chr3D 87.698 252 23 3 1250 1497 57330838 57331085 1.300000e-73 287.0
7 TraesCS3D01G104800 chr3D 86.538 260 23 6 224 474 57319954 57320210 2.820000e-70 276.0
8 TraesCS3D01G104800 chr3D 84.716 229 8 8 468 688 57324767 57324976 1.350000e-48 204.0
9 TraesCS3D01G104800 chr3D 84.530 181 16 3 2586 2758 57337154 57337330 4.920000e-38 169.0
10 TraesCS3D01G104800 chr3D 90.000 70 4 1 1 67 57327790 57327859 1.420000e-13 87.9
11 TraesCS3D01G104800 chr3B 85.116 2029 154 68 150 2104 90208361 90210315 0.000000e+00 1938.0
12 TraesCS3D01G104800 chr3B 85.043 1638 134 47 339 1924 90159844 90158266 0.000000e+00 1565.0
13 TraesCS3D01G104800 chr3B 87.636 275 16 5 2307 2564 90157364 90157091 1.290000e-78 303.0
14 TraesCS3D01G104800 chr3B 93.651 189 4 3 1916 2104 90157716 90157536 2.820000e-70 276.0
15 TraesCS3D01G104800 chr3B 91.667 192 13 2 2596 2785 90156899 90157089 2.190000e-66 263.0
16 TraesCS3D01G104800 chr3B 84.466 206 20 3 2586 2783 90210824 90211025 2.920000e-45 193.0
17 TraesCS3D01G104800 chr3B 91.667 72 4 1 2161 2230 90157432 90157361 6.540000e-17 99.0
18 TraesCS3D01G104800 chr3A 85.435 1895 112 60 227 2052 66273275 66271476 0.000000e+00 1820.0
19 TraesCS3D01G104800 chr3A 88.316 1087 73 25 1028 2104 66363083 66364125 0.000000e+00 1254.0
20 TraesCS3D01G104800 chr3A 89.949 587 33 7 2307 2870 66364285 66364868 0.000000e+00 734.0
21 TraesCS3D01G104800 chr3A 89.780 499 26 9 2307 2781 66367991 66368488 1.460000e-172 616.0
22 TraesCS3D01G104800 chr3A 88.294 504 34 8 2307 2785 66271290 66270787 5.330000e-162 580.0
23 TraesCS3D01G104800 chr3A 84.016 244 21 4 801 1026 66362804 66363047 4.810000e-53 219.0
24 TraesCS3D01G104800 chr3A 88.406 138 8 4 1964 2101 66367703 66367832 2.960000e-35 159.0
25 TraesCS3D01G104800 chr5B 92.473 93 5 2 2226 2316 263519674 263519582 6.450000e-27 132.0
26 TraesCS3D01G104800 chr5B 89.000 100 6 5 2227 2322 35382371 35382469 5.020000e-23 119.0
27 TraesCS3D01G104800 chr2D 92.222 90 4 3 2224 2310 302248010 302248099 1.080000e-24 124.0
28 TraesCS3D01G104800 chr2A 89.216 102 7 4 2220 2317 65084808 65084909 1.080000e-24 124.0
29 TraesCS3D01G104800 chr2A 89.796 98 7 3 2220 2314 70189541 70189444 3.880000e-24 122.0
30 TraesCS3D01G104800 chr2A 91.304 92 5 3 2222 2310 483604660 483604569 3.880000e-24 122.0
31 TraesCS3D01G104800 chr6A 90.526 95 5 4 2219 2310 601226015 601226108 3.880000e-24 122.0
32 TraesCS3D01G104800 chr7B 89.691 97 5 5 2219 2312 639796290 639796196 5.020000e-23 119.0
33 TraesCS3D01G104800 chr1A 88.889 99 8 2 2215 2310 530756563 530756661 5.020000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G104800 chr3D 57176998 57179867 2869 True 5301.000000 5301 100.00000 1 2870 1 chr3D.!!$R1 2869
1 TraesCS3D01G104800 chr3D 57324767 57337330 12563 False 547.877778 1502 86.89200 1 2758 9 chr3D.!!$F2 2757
2 TraesCS3D01G104800 chr3B 90208361 90211025 2664 False 1065.500000 1938 84.79100 150 2783 2 chr3B.!!$F2 2633
3 TraesCS3D01G104800 chr3B 90157091 90159844 2753 True 560.750000 1565 89.49925 339 2564 4 chr3B.!!$R1 2225
4 TraesCS3D01G104800 chr3A 66270787 66273275 2488 True 1200.000000 1820 86.86450 227 2785 2 chr3A.!!$R1 2558
5 TraesCS3D01G104800 chr3A 66362804 66368488 5684 False 596.400000 1254 88.09340 801 2870 5 chr3A.!!$F1 2069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 3541 0.108041 CCATGCCAATCCAAACAGCC 60.108 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 12719 1.003003 TGACCCTGCGTCATCAATTCA 59.997 47.619 0.0 0.0 46.8 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 3056 3.052082 CCAAGCCCGACACTGCTG 61.052 66.667 0.00 0.00 38.00 4.41
35 3059 4.694233 AGCCCGACACTGCTGCTG 62.694 66.667 4.89 4.89 36.23 4.41
49 3076 2.284190 GCTGCTGATGACTTCCCTTAC 58.716 52.381 0.00 0.00 0.00 2.34
57 3084 2.414612 TGACTTCCCTTACCCAACAGT 58.585 47.619 0.00 0.00 0.00 3.55
67 3094 1.445582 CCCAACAGTAGGCGTCGTC 60.446 63.158 0.00 0.00 0.00 4.20
68 3095 1.800315 CCAACAGTAGGCGTCGTCG 60.800 63.158 0.00 0.00 40.37 5.12
87 3114 4.838486 CGTCCGTCGCTGCCTCTC 62.838 72.222 0.00 0.00 0.00 3.20
88 3115 4.838486 GTCCGTCGCTGCCTCTCG 62.838 72.222 0.00 0.00 0.00 4.04
95 3122 4.527583 GCTGCCTCTCGCCCTCAG 62.528 72.222 0.00 0.00 36.24 3.35
96 3123 2.757508 CTGCCTCTCGCCCTCAGA 60.758 66.667 0.00 0.00 36.24 3.27
97 3124 2.757508 TGCCTCTCGCCCTCAGAG 60.758 66.667 0.00 0.00 37.70 3.35
129 3156 4.823989 CCAAGGATCATATTCCAGTCAACC 59.176 45.833 0.00 0.00 38.32 3.77
132 3159 5.688807 AGGATCATATTCCAGTCAACCAAG 58.311 41.667 0.00 0.00 38.32 3.61
133 3160 5.192522 AGGATCATATTCCAGTCAACCAAGT 59.807 40.000 0.00 0.00 38.32 3.16
134 3161 5.529060 GGATCATATTCCAGTCAACCAAGTC 59.471 44.000 0.00 0.00 35.72 3.01
135 3162 5.497464 TCATATTCCAGTCAACCAAGTCA 57.503 39.130 0.00 0.00 0.00 3.41
138 3165 4.974645 ATTCCAGTCAACCAAGTCAGTA 57.025 40.909 0.00 0.00 0.00 2.74
139 3166 4.974645 TTCCAGTCAACCAAGTCAGTAT 57.025 40.909 0.00 0.00 0.00 2.12
140 3167 4.537135 TCCAGTCAACCAAGTCAGTATC 57.463 45.455 0.00 0.00 0.00 2.24
141 3168 3.901222 TCCAGTCAACCAAGTCAGTATCA 59.099 43.478 0.00 0.00 0.00 2.15
142 3169 4.021104 TCCAGTCAACCAAGTCAGTATCAG 60.021 45.833 0.00 0.00 0.00 2.90
144 3171 3.904339 AGTCAACCAAGTCAGTATCAGGT 59.096 43.478 0.00 0.00 0.00 4.00
145 3172 4.348168 AGTCAACCAAGTCAGTATCAGGTT 59.652 41.667 0.00 0.00 39.76 3.50
146 3173 5.063880 GTCAACCAAGTCAGTATCAGGTTT 58.936 41.667 0.00 0.00 37.26 3.27
147 3174 5.531287 GTCAACCAAGTCAGTATCAGGTTTT 59.469 40.000 0.00 0.00 37.26 2.43
148 3175 5.530915 TCAACCAAGTCAGTATCAGGTTTTG 59.469 40.000 0.00 0.00 37.26 2.44
160 3210 2.763448 TCAGGTTTTGTTTGGTTCCAGG 59.237 45.455 0.00 0.00 0.00 4.45
164 3214 5.069781 CAGGTTTTGTTTGGTTCCAGGAATA 59.930 40.000 4.80 0.00 0.00 1.75
166 3216 6.014584 AGGTTTTGTTTGGTTCCAGGAATATC 60.015 38.462 4.80 0.00 0.00 1.63
236 3299 3.754323 CGGAAACATTTTGGCACCTACTA 59.246 43.478 0.00 0.00 0.00 1.82
252 3315 8.235226 GGCACCTACTAAAATAACTGAAACTTC 58.765 37.037 0.00 0.00 0.00 3.01
263 3326 8.902540 AATAACTGAAACTTCCCAAAATTTCC 57.097 30.769 0.00 0.00 31.39 3.13
282 3345 7.365497 ATTTCCCTGAAATTTCACTGAAAGT 57.635 32.000 27.39 19.28 43.45 2.66
297 3361 5.227238 CTGAAAGTGACAACCATCTATGC 57.773 43.478 0.00 0.00 0.00 3.14
298 3362 4.650734 TGAAAGTGACAACCATCTATGCA 58.349 39.130 0.00 0.00 0.00 3.96
299 3363 4.455533 TGAAAGTGACAACCATCTATGCAC 59.544 41.667 0.00 0.00 0.00 4.57
300 3364 3.701205 AGTGACAACCATCTATGCACA 57.299 42.857 0.00 0.00 0.00 4.57
311 3379 0.675837 CTATGCACACAGGCTGCTGT 60.676 55.000 15.89 14.93 38.21 4.40
363 3440 5.144100 TCAATACATTCACAAGGGTTTGGT 58.856 37.500 0.00 0.00 38.66 3.67
399 3485 6.493458 TCTTTCCACATATATCCGACTCATGA 59.507 38.462 0.00 0.00 0.00 3.07
410 3496 3.761752 TCCGACTCATGACACACTCATAA 59.238 43.478 0.00 0.00 37.53 1.90
455 3541 0.108041 CCATGCCAATCCAAACAGCC 60.108 55.000 0.00 0.00 0.00 4.85
474 3560 9.890915 AAACAGCCAAATTTCCCCTATATTATA 57.109 29.630 0.00 0.00 0.00 0.98
502 3590 3.890147 CCATAGTGGGGTACTCACTACTC 59.110 52.174 22.36 0.00 46.43 2.59
530 3618 5.877012 ACATGTGAGAAAAGAGATGCGTATT 59.123 36.000 0.00 0.00 0.00 1.89
560 3654 2.600731 CGGTCATCTCTCACAGACAAC 58.399 52.381 0.00 0.00 32.26 3.32
584 3678 0.468214 TCATCTGCCTCCTCCTACCG 60.468 60.000 0.00 0.00 0.00 4.02
585 3679 0.757188 CATCTGCCTCCTCCTACCGT 60.757 60.000 0.00 0.00 0.00 4.83
586 3680 0.468400 ATCTGCCTCCTCCTACCGTC 60.468 60.000 0.00 0.00 0.00 4.79
588 3682 2.279408 GCCTCCTCCTACCGTCCT 59.721 66.667 0.00 0.00 0.00 3.85
589 3683 1.284111 TGCCTCCTCCTACCGTCCTA 61.284 60.000 0.00 0.00 0.00 2.94
669 3779 0.825840 GAGCCTCCTATCCACTCGCT 60.826 60.000 0.00 0.00 0.00 4.93
691 3801 1.633774 GTCTCACTCCCACTTCTCCA 58.366 55.000 0.00 0.00 0.00 3.86
707 3849 4.179926 TCTCCATCTTCAGAAGTTCACG 57.820 45.455 10.09 0.00 0.00 4.35
734 3876 2.564771 CTTGTTCTTGCAGTGTCCAGA 58.435 47.619 0.00 0.00 0.00 3.86
735 3877 2.245159 TGTTCTTGCAGTGTCCAGAG 57.755 50.000 0.00 0.00 0.00 3.35
743 3885 1.270839 GCAGTGTCCAGAGGCTGTAAA 60.271 52.381 0.00 0.00 0.00 2.01
744 3886 2.693069 CAGTGTCCAGAGGCTGTAAAG 58.307 52.381 0.00 0.00 0.00 1.85
810 3958 2.791383 ATGAGCTCTACGATGACTGC 57.209 50.000 16.19 0.00 0.00 4.40
857 4005 4.468689 GCTGCCCCGGTAGACCAC 62.469 72.222 0.00 0.00 35.14 4.16
985 4154 2.897436 TGAGGATCAACGCTCATCTTG 58.103 47.619 0.00 0.00 45.97 3.02
987 4156 0.659957 GGATCAACGCTCATCTTGCC 59.340 55.000 0.00 0.00 0.00 4.52
998 4167 3.315142 ATCTTGCCGCGCTCAGGAA 62.315 57.895 5.56 0.33 0.00 3.36
1048 4251 5.532406 TGAGGCAACAATATCTTAGCCATTC 59.468 40.000 0.00 0.00 44.34 2.67
1073 4276 1.985473 TTTCAGTGCTGTGAGGCATT 58.015 45.000 0.00 0.00 44.34 3.56
1122 4325 9.196552 CATAATTATTGTCGTTAGCTGATCAGA 57.803 33.333 27.04 3.12 0.00 3.27
1482 11528 2.637383 GGAAGCCGACGTGGTCTCT 61.637 63.158 0.00 0.00 41.21 3.10
1541 11587 1.267121 AGACGCCTGTACATGAAGGT 58.733 50.000 0.00 0.00 35.86 3.50
1626 11672 2.347322 GCTGAGGACGGTGAGAGCT 61.347 63.158 0.00 0.00 0.00 4.09
1683 11729 1.423584 TCACACTCTGCAAGGAGGAA 58.576 50.000 7.77 0.00 37.63 3.36
1718 11770 1.593787 CAGGTCGTGCTGGACTGAT 59.406 57.895 7.48 0.00 37.12 2.90
1764 11816 2.177594 CTCTGGCCAAGGTCGCTTCT 62.178 60.000 7.01 0.00 0.00 2.85
1787 11839 0.320771 GAGCTGGTGTGTGGTGGTAG 60.321 60.000 0.00 0.00 0.00 3.18
1788 11840 1.966451 GCTGGTGTGTGGTGGTAGC 60.966 63.158 0.00 0.00 0.00 3.58
1789 11841 1.449782 CTGGTGTGTGGTGGTAGCA 59.550 57.895 0.00 0.00 0.00 3.49
1790 11842 0.603707 CTGGTGTGTGGTGGTAGCAG 60.604 60.000 0.00 0.00 33.14 4.24
1791 11843 1.966451 GGTGTGTGGTGGTAGCAGC 60.966 63.158 16.91 16.91 0.00 5.25
1792 11844 2.030412 TGTGTGGTGGTAGCAGCG 59.970 61.111 18.30 0.00 0.00 5.18
1793 11845 2.742372 GTGTGGTGGTAGCAGCGG 60.742 66.667 18.30 0.00 0.00 5.52
1794 11846 4.697756 TGTGGTGGTAGCAGCGGC 62.698 66.667 18.30 13.93 41.61 6.53
1795 11847 4.697756 GTGGTGGTAGCAGCGGCA 62.698 66.667 18.30 0.00 44.61 5.69
1796 11848 4.393155 TGGTGGTAGCAGCGGCAG 62.393 66.667 18.30 0.00 44.61 4.85
1815 11867 2.743928 GGCAGTCCGCTCCAGTTG 60.744 66.667 0.00 0.00 41.91 3.16
1875 11927 8.661752 ACTCAATCATGTCCATATAGATGAGA 57.338 34.615 0.00 0.00 34.73 3.27
1927 12539 1.177401 GATTTGAGGTTGGGACTGCC 58.823 55.000 0.00 0.00 0.00 4.85
1982 12643 6.070881 GCAGTCACTCCAGGATAGATATCATT 60.071 42.308 5.32 0.00 34.40 2.57
2052 12717 8.435187 ACATTCAGATTGCAGAAATCCTAGATA 58.565 33.333 0.00 0.00 45.10 1.98
2055 12720 8.843885 TCAGATTGCAGAAATCCTAGATAATG 57.156 34.615 0.00 0.00 45.10 1.90
2061 12726 9.631257 TTGCAGAAATCCTAGATAATGAATTGA 57.369 29.630 0.00 0.00 0.00 2.57
2126 12807 0.622136 ATGCAGCACCTCCTCATTGA 59.378 50.000 0.00 0.00 0.00 2.57
2128 12809 1.839354 TGCAGCACCTCCTCATTGATA 59.161 47.619 0.00 0.00 0.00 2.15
2129 12810 2.440627 TGCAGCACCTCCTCATTGATAT 59.559 45.455 0.00 0.00 0.00 1.63
2130 12811 3.647590 TGCAGCACCTCCTCATTGATATA 59.352 43.478 0.00 0.00 0.00 0.86
2131 12812 3.999663 GCAGCACCTCCTCATTGATATAC 59.000 47.826 0.00 0.00 0.00 1.47
2132 12813 4.240888 CAGCACCTCCTCATTGATATACG 58.759 47.826 0.00 0.00 0.00 3.06
2134 12815 3.990469 GCACCTCCTCATTGATATACGTG 59.010 47.826 0.00 0.00 0.00 4.49
2136 12817 4.984785 CACCTCCTCATTGATATACGTGTG 59.015 45.833 0.00 0.00 0.00 3.82
2137 12818 4.649674 ACCTCCTCATTGATATACGTGTGT 59.350 41.667 0.00 0.00 0.00 3.72
2138 12819 5.221263 ACCTCCTCATTGATATACGTGTGTC 60.221 44.000 0.00 0.00 0.00 3.67
2140 12821 6.073327 TCCTCATTGATATACGTGTGTCTC 57.927 41.667 10.22 0.00 0.00 3.36
2142 12823 6.265422 TCCTCATTGATATACGTGTGTCTCAT 59.735 38.462 10.22 0.60 0.00 2.90
2150 12831 5.961396 ATACGTGTGTCTCATATACTCCC 57.039 43.478 0.00 0.00 0.00 4.30
2153 12834 3.574396 CGTGTGTCTCATATACTCCCCAT 59.426 47.826 0.00 0.00 0.00 4.00
2154 12835 4.559502 CGTGTGTCTCATATACTCCCCATG 60.560 50.000 0.00 0.00 0.00 3.66
2157 12838 5.846164 TGTGTCTCATATACTCCCCATGATT 59.154 40.000 0.00 0.00 0.00 2.57
2165 12884 8.375506 TCATATACTCCCCATGATTAGTTTGTC 58.624 37.037 0.00 0.00 0.00 3.18
2241 12962 9.822185 GAGTAAAATAATACTCCCCGTAAAGAA 57.178 33.333 3.62 0.00 43.88 2.52
2251 12972 6.522946 ACTCCCCGTAAAGAAATATAAGAGC 58.477 40.000 0.00 0.00 0.00 4.09
2252 12973 5.535333 TCCCCGTAAAGAAATATAAGAGCG 58.465 41.667 0.00 0.00 0.00 5.03
2253 12974 5.069516 TCCCCGTAAAGAAATATAAGAGCGT 59.930 40.000 0.00 0.00 0.00 5.07
2254 12975 5.756833 CCCCGTAAAGAAATATAAGAGCGTT 59.243 40.000 0.00 0.00 0.00 4.84
2255 12976 6.259387 CCCCGTAAAGAAATATAAGAGCGTTT 59.741 38.462 0.00 0.00 0.00 3.60
2256 12977 7.439056 CCCCGTAAAGAAATATAAGAGCGTTTA 59.561 37.037 0.00 0.00 0.00 2.01
2257 12978 8.485591 CCCGTAAAGAAATATAAGAGCGTTTAG 58.514 37.037 0.00 0.00 0.00 1.85
2258 12979 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2271 12992 7.763172 AGAGCGTTTAGATCATTAAAGAGTG 57.237 36.000 0.00 0.00 37.82 3.51
2272 12993 7.548097 AGAGCGTTTAGATCATTAAAGAGTGA 58.452 34.615 0.00 0.00 37.82 3.41
2273 12994 8.200792 AGAGCGTTTAGATCATTAAAGAGTGAT 58.799 33.333 0.00 0.00 37.82 3.06
2274 12995 8.359060 AGCGTTTAGATCATTAAAGAGTGATC 57.641 34.615 8.21 8.21 46.99 2.92
2282 13003 8.649973 GATCATTAAAGAGTGATCTAAACGGT 57.350 34.615 8.80 0.00 44.55 4.83
2283 13004 8.649973 ATCATTAAAGAGTGATCTAAACGGTC 57.350 34.615 0.00 0.00 29.36 4.79
2284 13005 7.837863 TCATTAAAGAGTGATCTAAACGGTCT 58.162 34.615 0.00 0.00 0.00 3.85
2285 13006 8.963725 TCATTAAAGAGTGATCTAAACGGTCTA 58.036 33.333 0.00 0.00 0.00 2.59
2286 13007 9.582431 CATTAAAGAGTGATCTAAACGGTCTAA 57.418 33.333 0.00 0.00 0.00 2.10
2292 13013 9.968870 AGAGTGATCTAAACGGTCTAATATTTC 57.031 33.333 0.00 0.00 0.00 2.17
2293 13014 9.968870 GAGTGATCTAAACGGTCTAATATTTCT 57.031 33.333 0.00 0.00 0.00 2.52
2302 13023 8.943909 AACGGTCTAATATTTCTTTACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
2303 13024 7.498443 ACGGTCTAATATTTCTTTACAGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
2304 13025 7.343833 ACGGTCTAATATTTCTTTACAGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
2305 13026 7.868415 CGGTCTAATATTTCTTTACAGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
2306 13027 8.706521 GGTCTAATATTTCTTTACAGAGGGAGT 58.293 37.037 0.00 0.00 0.00 3.85
2354 13079 6.941857 AGTTTTCAAGGTTTTTACACCATGT 58.058 32.000 0.00 0.00 39.62 3.21
2389 13114 6.856895 ACAAAATAGAGCATTTTAGCACCTC 58.143 36.000 0.00 0.00 43.51 3.85
2527 17049 4.558178 TGACATGCAAAAATTGTAGGCAG 58.442 39.130 0.00 0.00 37.96 4.85
2529 17051 3.244146 ACATGCAAAAATTGTAGGCAGCA 60.244 39.130 0.00 0.00 37.96 4.41
2635 17166 5.093849 TGCTTACCCTACTTTACCACATC 57.906 43.478 0.00 0.00 0.00 3.06
2666 17197 6.629128 TCTTCTTCAGATTCTAGAAGCACAG 58.371 40.000 21.97 13.80 42.82 3.66
2736 17272 4.275936 GCAAGCCTGAAACTTCTGTCTAAA 59.724 41.667 0.00 0.00 0.00 1.85
2785 17325 1.172180 ACACAGTTGCCGGTTGGATG 61.172 55.000 1.90 0.00 37.49 3.51
2786 17326 1.150536 ACAGTTGCCGGTTGGATGT 59.849 52.632 1.90 0.00 37.49 3.06
2787 17327 1.172180 ACAGTTGCCGGTTGGATGTG 61.172 55.000 1.90 0.00 37.49 3.21
2788 17328 2.258286 GTTGCCGGTTGGATGTGC 59.742 61.111 1.90 0.00 37.49 4.57
2789 17329 2.988684 TTGCCGGTTGGATGTGCC 60.989 61.111 1.90 0.00 37.49 5.01
2801 17341 3.499338 TGGATGTGCCAAAATCAAGAGT 58.501 40.909 0.00 0.00 45.87 3.24
2802 17342 3.256383 TGGATGTGCCAAAATCAAGAGTG 59.744 43.478 0.00 0.00 45.87 3.51
2803 17343 3.256631 GGATGTGCCAAAATCAAGAGTGT 59.743 43.478 0.00 0.00 36.34 3.55
2804 17344 3.988379 TGTGCCAAAATCAAGAGTGTC 57.012 42.857 0.00 0.00 0.00 3.67
2805 17345 3.554934 TGTGCCAAAATCAAGAGTGTCT 58.445 40.909 0.00 0.00 0.00 3.41
2806 17346 3.953612 TGTGCCAAAATCAAGAGTGTCTT 59.046 39.130 0.00 0.00 37.14 3.01
2807 17347 4.402155 TGTGCCAAAATCAAGAGTGTCTTT 59.598 37.500 0.00 0.00 33.78 2.52
2808 17348 5.592282 TGTGCCAAAATCAAGAGTGTCTTTA 59.408 36.000 0.00 0.00 33.78 1.85
2809 17349 6.145535 GTGCCAAAATCAAGAGTGTCTTTAG 58.854 40.000 0.00 0.00 33.78 1.85
2810 17350 5.157067 GCCAAAATCAAGAGTGTCTTTAGC 58.843 41.667 0.00 0.00 33.78 3.09
2811 17351 5.048434 GCCAAAATCAAGAGTGTCTTTAGCT 60.048 40.000 0.00 0.00 33.78 3.32
2812 17352 6.149474 GCCAAAATCAAGAGTGTCTTTAGCTA 59.851 38.462 0.00 0.00 33.78 3.32
2813 17353 7.625185 GCCAAAATCAAGAGTGTCTTTAGCTAG 60.625 40.741 0.00 0.00 33.78 3.42
2814 17354 6.976636 AAATCAAGAGTGTCTTTAGCTAGC 57.023 37.500 6.62 6.62 33.78 3.42
2815 17355 5.930837 ATCAAGAGTGTCTTTAGCTAGCT 57.069 39.130 23.12 23.12 33.78 3.32
2816 17356 7.411486 AATCAAGAGTGTCTTTAGCTAGCTA 57.589 36.000 20.67 20.67 33.78 3.32
2817 17357 6.835819 TCAAGAGTGTCTTTAGCTAGCTAA 57.164 37.500 29.22 29.22 33.78 3.09
2818 17358 7.411486 TCAAGAGTGTCTTTAGCTAGCTAAT 57.589 36.000 32.22 19.36 38.20 1.73
2819 17359 7.841956 TCAAGAGTGTCTTTAGCTAGCTAATT 58.158 34.615 32.22 20.02 38.20 1.40
2820 17360 8.967918 TCAAGAGTGTCTTTAGCTAGCTAATTA 58.032 33.333 32.22 21.93 38.20 1.40
2821 17361 9.026074 CAAGAGTGTCTTTAGCTAGCTAATTAC 57.974 37.037 32.22 29.28 38.20 1.89
2822 17362 8.294954 AGAGTGTCTTTAGCTAGCTAATTACA 57.705 34.615 32.22 30.96 38.20 2.41
2823 17363 8.410141 AGAGTGTCTTTAGCTAGCTAATTACAG 58.590 37.037 32.27 27.07 38.20 2.74
2824 17364 8.294954 AGTGTCTTTAGCTAGCTAATTACAGA 57.705 34.615 32.27 28.29 38.20 3.41
2825 17365 8.919145 AGTGTCTTTAGCTAGCTAATTACAGAT 58.081 33.333 32.27 25.59 38.20 2.90
2826 17366 9.535878 GTGTCTTTAGCTAGCTAATTACAGATT 57.464 33.333 32.27 10.16 38.20 2.40
2864 17404 3.610637 GCAATTGCTGGCCTTTTGA 57.389 47.368 23.21 0.00 38.21 2.69
2865 17405 2.103537 GCAATTGCTGGCCTTTTGAT 57.896 45.000 23.21 0.00 38.21 2.57
2866 17406 1.735571 GCAATTGCTGGCCTTTTGATG 59.264 47.619 23.21 0.00 38.21 3.07
2867 17407 2.613474 GCAATTGCTGGCCTTTTGATGA 60.613 45.455 23.21 0.00 38.21 2.92
2868 17408 3.666274 CAATTGCTGGCCTTTTGATGAA 58.334 40.909 3.32 0.00 0.00 2.57
2869 17409 4.258543 CAATTGCTGGCCTTTTGATGAAT 58.741 39.130 3.32 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.133742 CTTGGCCTCTTGCAACCACG 62.134 60.000 3.32 1.41 43.89 4.94
1 2 1.662044 CTTGGCCTCTTGCAACCAC 59.338 57.895 3.32 0.00 43.89 4.16
3 4 2.653115 GCTTGGCCTCTTGCAACC 59.347 61.111 3.32 0.00 43.89 3.77
4 5 2.653115 GGCTTGGCCTCTTGCAAC 59.347 61.111 3.32 0.00 46.69 4.17
32 3056 1.559682 TGGGTAAGGGAAGTCATCAGC 59.440 52.381 0.00 0.00 0.00 4.26
35 3059 3.009143 ACTGTTGGGTAAGGGAAGTCATC 59.991 47.826 0.00 0.00 0.00 2.92
49 3076 1.445582 GACGACGCCTACTGTTGGG 60.446 63.158 10.23 3.10 0.00 4.12
70 3097 4.838486 GAGAGGCAGCGACGGACG 62.838 72.222 0.00 0.00 45.66 4.79
71 3098 4.838486 CGAGAGGCAGCGACGGAC 62.838 72.222 0.00 0.00 0.00 4.79
98 3125 0.815213 TATGATCCTTGGCGCAGTGC 60.815 55.000 10.83 4.58 45.38 4.40
99 3126 1.888215 ATATGATCCTTGGCGCAGTG 58.112 50.000 10.83 0.00 0.00 3.66
100 3127 2.498167 GAATATGATCCTTGGCGCAGT 58.502 47.619 10.83 0.00 0.00 4.40
101 3128 1.808945 GGAATATGATCCTTGGCGCAG 59.191 52.381 10.83 0.00 36.50 5.18
102 3129 1.142667 TGGAATATGATCCTTGGCGCA 59.857 47.619 10.83 0.00 40.35 6.09
103 3130 1.808945 CTGGAATATGATCCTTGGCGC 59.191 52.381 0.00 0.00 40.35 6.53
104 3131 3.070018 GACTGGAATATGATCCTTGGCG 58.930 50.000 0.00 0.00 40.35 5.69
105 3132 4.090761 TGACTGGAATATGATCCTTGGC 57.909 45.455 0.00 0.00 40.35 4.52
106 3133 4.823989 GGTTGACTGGAATATGATCCTTGG 59.176 45.833 0.00 0.00 40.35 3.61
107 3134 5.439721 TGGTTGACTGGAATATGATCCTTG 58.560 41.667 0.00 0.00 40.35 3.61
108 3135 5.715439 TGGTTGACTGGAATATGATCCTT 57.285 39.130 0.00 0.00 40.35 3.36
109 3136 5.192522 ACTTGGTTGACTGGAATATGATCCT 59.807 40.000 0.00 0.00 40.35 3.24
110 3137 5.440610 ACTTGGTTGACTGGAATATGATCC 58.559 41.667 0.00 0.00 40.10 3.36
114 3141 5.248640 ACTGACTTGGTTGACTGGAATATG 58.751 41.667 0.00 0.00 0.00 1.78
129 3156 6.183360 ACCAAACAAAACCTGATACTGACTTG 60.183 38.462 0.00 0.00 0.00 3.16
132 3159 5.767816 ACCAAACAAAACCTGATACTGAC 57.232 39.130 0.00 0.00 0.00 3.51
133 3160 5.300792 GGAACCAAACAAAACCTGATACTGA 59.699 40.000 0.00 0.00 0.00 3.41
134 3161 5.068460 TGGAACCAAACAAAACCTGATACTG 59.932 40.000 0.00 0.00 0.00 2.74
135 3162 5.205056 TGGAACCAAACAAAACCTGATACT 58.795 37.500 0.00 0.00 0.00 2.12
138 3165 3.387699 CCTGGAACCAAACAAAACCTGAT 59.612 43.478 0.00 0.00 0.00 2.90
139 3166 2.763448 CCTGGAACCAAACAAAACCTGA 59.237 45.455 0.00 0.00 0.00 3.86
140 3167 2.763448 TCCTGGAACCAAACAAAACCTG 59.237 45.455 0.00 0.00 0.00 4.00
141 3168 3.108847 TCCTGGAACCAAACAAAACCT 57.891 42.857 0.00 0.00 0.00 3.50
142 3169 3.897141 TTCCTGGAACCAAACAAAACC 57.103 42.857 4.68 0.00 0.00 3.27
144 3171 6.991938 CAGATATTCCTGGAACCAAACAAAA 58.008 36.000 12.11 0.00 0.00 2.44
145 3172 6.588719 CAGATATTCCTGGAACCAAACAAA 57.411 37.500 12.11 0.00 0.00 2.83
204 3255 6.183360 TGCCAAAATGTTTCCGCAATTTTTAA 60.183 30.769 0.00 0.00 0.00 1.52
207 3258 3.629398 TGCCAAAATGTTTCCGCAATTTT 59.371 34.783 0.00 0.00 0.00 1.82
208 3259 3.003171 GTGCCAAAATGTTTCCGCAATTT 59.997 39.130 2.27 0.00 0.00 1.82
209 3260 2.547634 GTGCCAAAATGTTTCCGCAATT 59.452 40.909 2.27 0.00 0.00 2.32
210 3261 2.142319 GTGCCAAAATGTTTCCGCAAT 58.858 42.857 2.27 0.00 0.00 3.56
215 3278 5.715434 TTAGTAGGTGCCAAAATGTTTCC 57.285 39.130 0.00 0.00 0.00 3.13
258 3321 7.365497 ACTTTCAGTGAAATTTCAGGGAAAT 57.635 32.000 29.09 21.55 43.07 2.17
282 3345 3.337358 CTGTGTGCATAGATGGTTGTCA 58.663 45.455 0.00 0.00 0.00 3.58
283 3346 2.679837 CCTGTGTGCATAGATGGTTGTC 59.320 50.000 0.00 0.00 0.00 3.18
285 3348 1.402968 GCCTGTGTGCATAGATGGTTG 59.597 52.381 0.00 0.00 0.00 3.77
293 3356 4.306767 CAGCAGCCTGTGTGCATA 57.693 55.556 0.00 0.00 43.82 3.14
311 3379 5.828328 ACTGTAGTGTAGTATCTATGCAGCA 59.172 40.000 0.00 0.00 0.00 4.41
312 3380 6.320494 ACTGTAGTGTAGTATCTATGCAGC 57.680 41.667 0.00 0.00 0.00 5.25
352 3429 2.455557 TCATGCCATACCAAACCCTTG 58.544 47.619 0.00 0.00 0.00 3.61
363 3440 9.399797 GATATATGTGGAAAGAATCATGCCATA 57.600 33.333 0.00 0.00 0.00 2.74
399 3485 1.071699 AGGTGGCGTTTATGAGTGTGT 59.928 47.619 0.00 0.00 0.00 3.72
410 3496 1.603455 CAATGGGTGAGGTGGCGTT 60.603 57.895 0.00 0.00 0.00 4.84
480 3566 3.890147 GAGTAGTGAGTACCCCACTATGG 59.110 52.174 21.35 0.00 45.44 2.74
530 3618 2.891580 GAGAGATGACCGCCCTACATAA 59.108 50.000 0.00 0.00 0.00 1.90
560 3654 0.686224 GGAGGAGGCAGATGATGAGG 59.314 60.000 0.00 0.00 0.00 3.86
669 3779 1.887198 GAGAAGTGGGAGTGAGACGAA 59.113 52.381 0.00 0.00 0.00 3.85
691 3801 4.561105 GAGGAACGTGAACTTCTGAAGAT 58.439 43.478 23.36 12.21 0.00 2.40
701 3843 2.835027 AGAACAAGGAGGAACGTGAAC 58.165 47.619 0.00 0.00 0.00 3.18
707 3849 2.291741 CACTGCAAGAACAAGGAGGAAC 59.708 50.000 0.00 0.00 37.43 3.62
734 3876 1.005215 AGCCAAGCATCTTTACAGCCT 59.995 47.619 0.00 0.00 0.00 4.58
735 3877 1.467920 AGCCAAGCATCTTTACAGCC 58.532 50.000 0.00 0.00 0.00 4.85
743 3885 0.323999 TGCCATCAAGCCAAGCATCT 60.324 50.000 0.00 0.00 0.00 2.90
744 3886 0.102481 CTGCCATCAAGCCAAGCATC 59.898 55.000 0.00 0.00 32.11 3.91
788 3930 3.243367 GCAGTCATCGTAGAGCTCATTCT 60.243 47.826 17.77 0.00 43.63 2.40
984 4153 3.774528 ATCTTCCTGAGCGCGGCA 61.775 61.111 8.83 3.42 0.00 5.69
985 4154 2.985512 ATCATCTTCCTGAGCGCGGC 62.986 60.000 8.83 0.00 0.00 6.53
987 4156 0.943359 GGATCATCTTCCTGAGCGCG 60.943 60.000 0.00 0.00 32.35 6.86
998 4167 3.321039 TGCTTGGTATCAGGGATCATCT 58.679 45.455 0.00 0.00 0.00 2.90
1026 4195 4.829492 GGAATGGCTAAGATATTGTTGCCT 59.171 41.667 12.44 0.00 40.82 4.75
1073 4276 2.034558 GCAGCTGAGCTTTGTTTGGTTA 59.965 45.455 20.43 0.00 36.40 2.85
1174 11191 4.047822 GCTGACATAAAGGTCGATCAGAG 58.952 47.826 11.54 0.00 40.72 3.35
1467 11513 2.597805 ACAGAGACCACGTCGGCT 60.598 61.111 0.00 0.00 39.03 5.52
1475 11521 1.980765 AGCAGAATTCCACAGAGACCA 59.019 47.619 0.65 0.00 0.00 4.02
1482 11528 1.236616 CGGTGCAGCAGAATTCCACA 61.237 55.000 17.33 0.00 0.00 4.17
1541 11587 2.050077 CGTCGCAGCTGACAGACA 60.050 61.111 25.88 1.69 38.84 3.41
1683 11729 2.686835 GCACTGCCTCCCTCCTCT 60.687 66.667 0.00 0.00 0.00 3.69
1718 11770 2.301296 CTCACAGCCTCCTTCAGAGAAA 59.699 50.000 0.00 0.00 46.50 2.52
1807 11859 1.440708 CTCTTGCTCTGCAACTGGAG 58.559 55.000 0.45 3.73 43.99 3.86
1815 11867 1.449956 CCTCTGCCTCTTGCTCTGC 60.450 63.158 0.00 0.00 42.00 4.26
1880 11932 7.335924 GGCACACAAAAATATACTCCAGAAGTA 59.664 37.037 0.00 0.00 44.49 2.24
1881 11933 6.151144 GGCACACAAAAATATACTCCAGAAGT 59.849 38.462 0.00 0.00 42.33 3.01
1882 11934 6.150976 TGGCACACAAAAATATACTCCAGAAG 59.849 38.462 0.00 0.00 0.00 2.85
1982 12643 2.020720 CACAGTGTAAACCCTGTTGCA 58.979 47.619 0.00 0.00 39.83 4.08
2052 12717 2.684881 GACCCTGCGTCATCAATTCATT 59.315 45.455 0.00 0.00 41.54 2.57
2054 12719 1.003003 TGACCCTGCGTCATCAATTCA 59.997 47.619 0.00 0.00 46.80 2.57
2055 12720 1.737838 TGACCCTGCGTCATCAATTC 58.262 50.000 0.00 0.00 46.80 2.17
2126 12807 6.602406 GGGGAGTATATGAGACACACGTATAT 59.398 42.308 0.00 0.00 0.00 0.86
2128 12809 4.765856 GGGGAGTATATGAGACACACGTAT 59.234 45.833 0.00 0.00 0.00 3.06
2129 12810 4.139786 GGGGAGTATATGAGACACACGTA 58.860 47.826 0.00 0.00 0.00 3.57
2130 12811 2.957006 GGGGAGTATATGAGACACACGT 59.043 50.000 0.00 0.00 0.00 4.49
2131 12812 2.956333 TGGGGAGTATATGAGACACACG 59.044 50.000 0.00 0.00 0.00 4.49
2132 12813 4.588951 TCATGGGGAGTATATGAGACACAC 59.411 45.833 0.00 0.00 0.00 3.82
2134 12815 6.365970 AATCATGGGGAGTATATGAGACAC 57.634 41.667 0.00 0.00 34.64 3.67
2136 12817 7.726033 ACTAATCATGGGGAGTATATGAGAC 57.274 40.000 0.00 0.00 34.64 3.36
2137 12818 8.597167 CAAACTAATCATGGGGAGTATATGAGA 58.403 37.037 0.00 0.00 34.64 3.27
2138 12819 8.378565 ACAAACTAATCATGGGGAGTATATGAG 58.621 37.037 0.00 0.00 34.64 2.90
2140 12821 8.156820 TGACAAACTAATCATGGGGAGTATATG 58.843 37.037 0.00 0.00 0.00 1.78
2142 12823 7.684317 TGACAAACTAATCATGGGGAGTATA 57.316 36.000 0.00 0.00 0.00 1.47
2146 12827 5.762825 CATGACAAACTAATCATGGGGAG 57.237 43.478 6.36 0.00 45.62 4.30
2153 12834 9.599866 CTGATACCTAACATGACAAACTAATCA 57.400 33.333 0.00 0.00 0.00 2.57
2154 12835 8.552034 GCTGATACCTAACATGACAAACTAATC 58.448 37.037 0.00 0.00 0.00 1.75
2157 12838 6.040247 CGCTGATACCTAACATGACAAACTA 58.960 40.000 0.00 0.00 0.00 2.24
2165 12884 5.006746 GGAAAACTCGCTGATACCTAACATG 59.993 44.000 0.00 0.00 0.00 3.21
2231 12952 6.839820 AACGCTCTTATATTTCTTTACGGG 57.160 37.500 0.00 0.00 0.00 5.28
2232 12953 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2245 12966 9.302345 CACTCTTTAATGATCTAAACGCTCTTA 57.698 33.333 0.00 0.00 0.00 2.10
2248 12969 7.757097 TCACTCTTTAATGATCTAAACGCTC 57.243 36.000 0.00 0.00 0.00 5.03
2249 12970 8.359060 GATCACTCTTTAATGATCTAAACGCT 57.641 34.615 8.80 0.00 45.20 5.07
2258 12979 8.478877 AGACCGTTTAGATCACTCTTTAATGAT 58.521 33.333 0.00 0.00 38.28 2.45
2259 12980 7.837863 AGACCGTTTAGATCACTCTTTAATGA 58.162 34.615 0.00 0.00 32.66 2.57
2260 12981 9.582431 TTAGACCGTTTAGATCACTCTTTAATG 57.418 33.333 0.00 0.00 32.66 1.90
2266 12987 9.968870 GAAATATTAGACCGTTTAGATCACTCT 57.031 33.333 0.00 0.00 35.39 3.24
2267 12988 9.968870 AGAAATATTAGACCGTTTAGATCACTC 57.031 33.333 0.00 0.00 0.00 3.51
2276 12997 9.379791 CCTCTGTAAAGAAATATTAGACCGTTT 57.620 33.333 0.00 0.00 0.00 3.60
2277 12998 7.985752 CCCTCTGTAAAGAAATATTAGACCGTT 59.014 37.037 0.00 0.00 0.00 4.44
2278 12999 7.343833 TCCCTCTGTAAAGAAATATTAGACCGT 59.656 37.037 0.00 0.00 0.00 4.83
2279 13000 7.723324 TCCCTCTGTAAAGAAATATTAGACCG 58.277 38.462 0.00 0.00 0.00 4.79
2280 13001 8.706521 ACTCCCTCTGTAAAGAAATATTAGACC 58.293 37.037 0.00 0.00 0.00 3.85
2287 13008 9.096823 TGAAAGTACTCCCTCTGTAAAGAAATA 57.903 33.333 0.00 0.00 0.00 1.40
2288 13009 7.974504 TGAAAGTACTCCCTCTGTAAAGAAAT 58.025 34.615 0.00 0.00 0.00 2.17
2289 13010 7.369551 TGAAAGTACTCCCTCTGTAAAGAAA 57.630 36.000 0.00 0.00 0.00 2.52
2290 13011 6.989155 TGAAAGTACTCCCTCTGTAAAGAA 57.011 37.500 0.00 0.00 0.00 2.52
2291 13012 6.989155 TTGAAAGTACTCCCTCTGTAAAGA 57.011 37.500 0.00 0.00 0.00 2.52
2292 13013 7.878127 TCATTTGAAAGTACTCCCTCTGTAAAG 59.122 37.037 0.00 0.00 0.00 1.85
2293 13014 7.741785 TCATTTGAAAGTACTCCCTCTGTAAA 58.258 34.615 0.00 0.00 0.00 2.01
2294 13015 7.311092 TCATTTGAAAGTACTCCCTCTGTAA 57.689 36.000 0.00 0.00 0.00 2.41
2295 13016 6.928348 TCATTTGAAAGTACTCCCTCTGTA 57.072 37.500 0.00 0.00 0.00 2.74
2296 13017 5.825593 TCATTTGAAAGTACTCCCTCTGT 57.174 39.130 0.00 0.00 0.00 3.41
2297 13018 7.510549 TTTTCATTTGAAAGTACTCCCTCTG 57.489 36.000 0.00 0.00 43.90 3.35
2389 13114 5.514274 TTAGAGCACAAAACCTTTTCTGG 57.486 39.130 0.00 0.00 0.00 3.86
2503 17025 5.549347 TGCCTACAATTTTTGCATGTCAAT 58.451 33.333 0.00 0.00 34.12 2.57
2511 17033 3.995705 TGAATGCTGCCTACAATTTTTGC 59.004 39.130 0.00 0.00 0.00 3.68
2527 17049 6.435428 CAAGTATAACGGGGTAATTGAATGC 58.565 40.000 0.00 0.00 29.96 3.56
2529 17051 6.665695 ACCAAGTATAACGGGGTAATTGAAT 58.334 36.000 5.40 0.00 29.96 2.57
2666 17197 6.993786 AGGCATTAGTAAGAAGAAGAAAGC 57.006 37.500 0.00 0.00 0.00 3.51
2736 17272 2.971330 ACATCTAGGCATCTAGCTGCTT 59.029 45.455 17.47 12.99 41.14 3.91
2785 17325 4.574599 AAGACACTCTTGATTTTGGCAC 57.425 40.909 0.00 0.00 34.98 5.01
2786 17326 5.278463 GCTAAAGACACTCTTGATTTTGGCA 60.278 40.000 0.00 0.00 36.71 4.92
2787 17327 5.048434 AGCTAAAGACACTCTTGATTTTGGC 60.048 40.000 0.00 0.00 36.71 4.52
2788 17328 6.566197 AGCTAAAGACACTCTTGATTTTGG 57.434 37.500 0.00 0.00 36.71 3.28
2789 17329 7.118971 AGCTAGCTAAAGACACTCTTGATTTTG 59.881 37.037 17.69 0.00 36.71 2.44
2790 17330 7.164803 AGCTAGCTAAAGACACTCTTGATTTT 58.835 34.615 17.69 0.00 36.71 1.82
2791 17331 6.706295 AGCTAGCTAAAGACACTCTTGATTT 58.294 36.000 17.69 0.00 36.71 2.17
2792 17332 6.293004 AGCTAGCTAAAGACACTCTTGATT 57.707 37.500 17.69 0.00 36.71 2.57
2793 17333 5.930837 AGCTAGCTAAAGACACTCTTGAT 57.069 39.130 17.69 0.00 36.71 2.57
2794 17334 6.835819 TTAGCTAGCTAAAGACACTCTTGA 57.164 37.500 30.42 7.23 36.71 3.02
2795 17335 9.026074 GTAATTAGCTAGCTAAAGACACTCTTG 57.974 37.037 34.45 0.00 41.21 3.02
2796 17336 8.750298 TGTAATTAGCTAGCTAAAGACACTCTT 58.250 33.333 34.45 24.27 41.21 2.85
2797 17337 8.294954 TGTAATTAGCTAGCTAAAGACACTCT 57.705 34.615 34.45 17.06 41.21 3.24
2798 17338 8.407064 TCTGTAATTAGCTAGCTAAAGACACTC 58.593 37.037 34.45 21.32 41.21 3.51
2799 17339 8.294954 TCTGTAATTAGCTAGCTAAAGACACT 57.705 34.615 34.45 18.38 41.21 3.55
2800 17340 9.535878 AATCTGTAATTAGCTAGCTAAAGACAC 57.464 33.333 34.45 27.05 41.21 3.67
2846 17386 1.735571 CATCAAAAGGCCAGCAATTGC 59.264 47.619 23.05 23.05 42.49 3.56
2847 17387 3.322211 TCATCAAAAGGCCAGCAATTG 57.678 42.857 5.01 0.00 0.00 2.32
2848 17388 4.563140 ATTCATCAAAAGGCCAGCAATT 57.437 36.364 5.01 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.