Multiple sequence alignment - TraesCS3D01G103300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G103300 chr3D 100.000 4205 0 0 1 4205 56126605 56130809 0.000000e+00 7766.0
1 TraesCS3D01G103300 chr3D 96.254 347 13 0 3859 4205 490970916 490971262 1.700000e-158 569.0
2 TraesCS3D01G103300 chr1B 96.881 3847 97 8 35 3861 683734110 683730267 0.000000e+00 6418.0
3 TraesCS3D01G103300 chr1B 96.544 3848 110 9 35 3861 338892849 338896694 0.000000e+00 6348.0
4 TraesCS3D01G103300 chr1B 96.361 3847 118 9 35 3861 583536739 583532895 0.000000e+00 6309.0
5 TraesCS3D01G103300 chr7B 96.829 3847 100 8 35 3861 698140192 698144036 0.000000e+00 6408.0
6 TraesCS3D01G103300 chr3B 96.594 3846 110 9 35 3861 92261888 92265731 0.000000e+00 6357.0
7 TraesCS3D01G103300 chr3B 96.411 3845 119 7 35 3861 92142956 92146799 0.000000e+00 6318.0
8 TraesCS3D01G103300 chrUn 96.544 3848 110 8 35 3861 40085891 40089736 0.000000e+00 6348.0
9 TraesCS3D01G103300 chrUn 97.245 3557 82 7 50 3591 223706887 223703332 0.000000e+00 6011.0
10 TraesCS3D01G103300 chrUn 97.775 1618 33 2 50 1665 266188035 266186419 0.000000e+00 2785.0
11 TraesCS3D01G103300 chrUn 98.046 563 11 0 35 597 427702724 427703286 0.000000e+00 979.0
12 TraesCS3D01G103300 chrUn 96.254 347 13 0 3859 4205 98419388 98419042 1.700000e-158 569.0
13 TraesCS3D01G103300 chrUn 100.000 34 0 0 1 34 40085831 40085864 3.510000e-06 63.9
14 TraesCS3D01G103300 chr2A 96.465 3847 112 8 35 3861 563256674 563260516 0.000000e+00 6329.0
15 TraesCS3D01G103300 chr5B 96.464 3846 113 8 35 3861 713082186 713078345 0.000000e+00 6327.0
16 TraesCS3D01G103300 chr6D 97.235 3544 84 7 50 3582 430481808 430485348 0.000000e+00 5989.0
17 TraesCS3D01G103300 chr6D 94.737 589 31 0 41 629 41290607 41290019 0.000000e+00 917.0
18 TraesCS3D01G103300 chr6D 96.830 347 11 0 3859 4205 197979473 197979127 7.840000e-162 580.0
19 TraesCS3D01G103300 chr4D 96.151 3559 120 9 35 3582 135035921 135032369 0.000000e+00 5797.0
20 TraesCS3D01G103300 chr4D 93.659 757 28 3 41 777 241236045 241235289 0.000000e+00 1114.0
21 TraesCS3D01G103300 chr4D 96.254 347 13 0 3859 4205 74027122 74027468 1.700000e-158 569.0
22 TraesCS3D01G103300 chr4D 96.254 347 13 0 3859 4205 113057336 113057682 1.700000e-158 569.0
23 TraesCS3D01G103300 chr1D 97.867 1547 31 1 35 1579 141344716 141343170 0.000000e+00 2673.0
24 TraesCS3D01G103300 chr1D 96.812 345 11 0 3861 4205 393408021 393408365 1.010000e-160 577.0
25 TraesCS3D01G103300 chr5D 96.830 347 11 0 3859 4205 38942134 38942480 7.840000e-162 580.0
26 TraesCS3D01G103300 chr7D 96.254 347 13 0 3859 4205 304982270 304982616 1.700000e-158 569.0
27 TraesCS3D01G103300 chr2D 96.254 347 13 0 3859 4205 215759508 215759162 1.700000e-158 569.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G103300 chr3D 56126605 56130809 4204 False 7766.00 7766 100.000 1 4205 1 chr3D.!!$F1 4204
1 TraesCS3D01G103300 chr1B 683730267 683734110 3843 True 6418.00 6418 96.881 35 3861 1 chr1B.!!$R2 3826
2 TraesCS3D01G103300 chr1B 338892849 338896694 3845 False 6348.00 6348 96.544 35 3861 1 chr1B.!!$F1 3826
3 TraesCS3D01G103300 chr1B 583532895 583536739 3844 True 6309.00 6309 96.361 35 3861 1 chr1B.!!$R1 3826
4 TraesCS3D01G103300 chr7B 698140192 698144036 3844 False 6408.00 6408 96.829 35 3861 1 chr7B.!!$F1 3826
5 TraesCS3D01G103300 chr3B 92261888 92265731 3843 False 6357.00 6357 96.594 35 3861 1 chr3B.!!$F2 3826
6 TraesCS3D01G103300 chr3B 92142956 92146799 3843 False 6318.00 6318 96.411 35 3861 1 chr3B.!!$F1 3826
7 TraesCS3D01G103300 chrUn 223703332 223706887 3555 True 6011.00 6011 97.245 50 3591 1 chrUn.!!$R2 3541
8 TraesCS3D01G103300 chrUn 40085831 40089736 3905 False 3205.95 6348 98.272 1 3861 2 chrUn.!!$F2 3860
9 TraesCS3D01G103300 chrUn 266186419 266188035 1616 True 2785.00 2785 97.775 50 1665 1 chrUn.!!$R3 1615
10 TraesCS3D01G103300 chrUn 427702724 427703286 562 False 979.00 979 98.046 35 597 1 chrUn.!!$F1 562
11 TraesCS3D01G103300 chr2A 563256674 563260516 3842 False 6329.00 6329 96.465 35 3861 1 chr2A.!!$F1 3826
12 TraesCS3D01G103300 chr5B 713078345 713082186 3841 True 6327.00 6327 96.464 35 3861 1 chr5B.!!$R1 3826
13 TraesCS3D01G103300 chr6D 430481808 430485348 3540 False 5989.00 5989 97.235 50 3582 1 chr6D.!!$F1 3532
14 TraesCS3D01G103300 chr6D 41290019 41290607 588 True 917.00 917 94.737 41 629 1 chr6D.!!$R1 588
15 TraesCS3D01G103300 chr4D 135032369 135035921 3552 True 5797.00 5797 96.151 35 3582 1 chr4D.!!$R1 3547
16 TraesCS3D01G103300 chr4D 241235289 241236045 756 True 1114.00 1114 93.659 41 777 1 chr4D.!!$R2 736
17 TraesCS3D01G103300 chr1D 141343170 141344716 1546 True 2673.00 2673 97.867 35 1579 1 chr1D.!!$R1 1544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 596 0.237235 GTTTTTGGTGCGATCGCTCA 59.763 50.0 37.01 30.27 42.51 4.26 F
1658 1712 0.887387 GCCTTACCAACAAGCCGACA 60.887 55.0 0.00 0.00 0.00 4.35 F
2423 2485 0.877071 TTGGTCAGACGACGACTACC 59.123 55.0 0.00 9.92 43.61 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 1884 1.033574 ACCCGGATCGAATCAGAGTC 58.966 55.0 0.73 0.0 0.00 3.36 R
2903 2971 0.821711 CCTTTTGCTCGTTGGGGACA 60.822 55.0 0.00 0.0 39.83 4.02 R
3866 3942 0.105709 CCTGTTGAAAGGGTTGGGGT 60.106 55.0 0.00 0.0 33.28 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
337 380 4.592485 ATCTTAGGAGCTGGTAATCACG 57.408 45.455 0.00 0.00 0.00 4.35
402 445 0.971386 CAGTGCCCAAAATGCCTCTT 59.029 50.000 0.00 0.00 0.00 2.85
410 453 4.564199 GCCCAAAATGCCTCTTGAAAGATT 60.564 41.667 0.00 0.00 33.93 2.40
495 538 8.280497 CGGTATGATAATACGATATGATGACGA 58.720 37.037 0.00 0.00 0.00 4.20
553 596 0.237235 GTTTTTGGTGCGATCGCTCA 59.763 50.000 37.01 30.27 42.51 4.26
609 652 4.830046 TCTCATGAGCTCCTGAGGTATTAC 59.170 45.833 34.61 1.65 39.57 1.89
905 955 4.641541 TCGAACTAGTCATTAATGGTCGGA 59.358 41.667 15.36 4.17 0.00 4.55
956 1006 4.926244 TGCGAACACTTTCATTTTTAGCA 58.074 34.783 0.00 0.00 0.00 3.49
985 1035 4.897509 TTCTCTGGAGAAGCTCAAATCA 57.102 40.909 8.74 0.00 42.06 2.57
1139 1189 9.197694 CTCTTCTTCCAATGGTACTATAATTCG 57.802 37.037 0.00 0.00 0.00 3.34
1146 1196 8.316214 TCCAATGGTACTATAATTCGTATTCCC 58.684 37.037 0.00 0.00 0.00 3.97
1332 1383 8.683615 GTTCCCGTTCTTCATTTCCTTATTATT 58.316 33.333 0.00 0.00 0.00 1.40
1375 1426 7.552687 TGTCATATTTAGAATCTTTCTGCGGTT 59.447 33.333 0.07 0.00 40.94 4.44
1382 1433 1.512926 TCTTTCTGCGGTTTGCTCTC 58.487 50.000 0.00 0.00 46.63 3.20
1410 1461 6.391537 ACAATTCTTTCGTACTCTCTTCTCC 58.608 40.000 0.00 0.00 0.00 3.71
1571 1622 2.824489 GCCTGTAGCTTTCCCCGC 60.824 66.667 0.00 0.00 38.99 6.13
1572 1623 2.124695 CCTGTAGCTTTCCCCGCC 60.125 66.667 0.00 0.00 0.00 6.13
1658 1712 0.887387 GCCTTACCAACAAGCCGACA 60.887 55.000 0.00 0.00 0.00 4.35
1686 1740 2.029649 GGCTGTTGGTCACGACTACTAA 60.030 50.000 0.00 0.00 31.91 2.24
1748 1803 4.457603 GTGTGCATCTTTATGTTGGGTGTA 59.542 41.667 0.00 0.00 35.38 2.90
1823 1878 1.282447 TCTATTTGTTTAGGGCGGGCA 59.718 47.619 3.27 0.00 0.00 5.36
1851 1906 2.558795 ACTCTGATTCGATCCGGGTATG 59.441 50.000 0.00 0.00 0.00 2.39
1885 1940 3.701664 TGAGATGCTCAGTTGACTCCTA 58.298 45.455 0.00 0.00 35.39 2.94
1936 1991 2.702592 TTCGTGCATAAGGGTAAGGG 57.297 50.000 0.00 0.00 0.00 3.95
2078 2138 1.336609 GGTACGCAAAGAGAGGTCGTT 60.337 52.381 0.00 0.00 34.97 3.85
2185 2246 4.087892 CTACCGCTGGCAGGCAGT 62.088 66.667 24.09 9.06 0.00 4.40
2423 2485 0.877071 TTGGTCAGACGACGACTACC 59.123 55.000 0.00 9.92 43.61 3.18
2479 2546 5.433051 TGGACTGGGATGGAATAGAAAGAAT 59.567 40.000 0.00 0.00 0.00 2.40
2503 2570 2.269978 GCAGCAAGCAAGGGATGAA 58.730 52.632 0.00 0.00 44.79 2.57
2640 2708 2.753029 GCAGCAGTTGGGTCTCCT 59.247 61.111 0.00 0.00 0.00 3.69
2792 2860 1.526887 ACAGTTCACTCAACGATTGCG 59.473 47.619 0.00 0.00 40.32 4.85
2831 2899 2.375014 ATGGGGAAGGAACGTTGTTT 57.625 45.000 5.00 0.00 0.00 2.83
2917 2985 0.759959 TAAACTGTCCCCAACGAGCA 59.240 50.000 0.00 0.00 0.00 4.26
2994 3062 4.775236 ACTTTCCTGCCTCATATGAGAAC 58.225 43.478 30.40 22.03 44.74 3.01
3065 3133 8.462016 ACATAAGAATTTCTGGTTTAGCATGTC 58.538 33.333 0.00 0.00 0.00 3.06
3079 3147 2.026449 AGCATGTCCCCAGAAAGAAGAG 60.026 50.000 0.00 0.00 0.00 2.85
3125 3195 1.002366 GCACGACTGAAGTGGCTATG 58.998 55.000 0.00 0.00 39.80 2.23
3142 3212 7.452501 AGTGGCTATGCATACAAATCCATTTAT 59.547 33.333 1.16 0.00 0.00 1.40
3255 3326 4.336713 GGATAGGATTTCTGTTGGCTTCAC 59.663 45.833 0.00 0.00 0.00 3.18
3324 3395 4.518590 TGCATTGGAATCGAGAAAGTTTCA 59.481 37.500 17.65 0.00 0.00 2.69
3454 3525 8.215050 TCCTTTGAAACCAATAGAAGTTCACTA 58.785 33.333 5.50 0.00 0.00 2.74
3693 3764 8.311836 ACGTCACTTTTCTTAGGAGATTTCATA 58.688 33.333 0.00 0.00 0.00 2.15
3756 3832 9.526713 CTCTATAATTCGAATGATATGTGGAGG 57.473 37.037 14.43 3.27 0.00 4.30
3798 3874 4.379652 CATCAATCGATACCATGGTGTCA 58.620 43.478 32.97 22.90 36.27 3.58
3847 3923 9.316730 CATTTCATCCCAAATTGGTATACAAAG 57.683 33.333 11.52 0.00 43.46 2.77
3861 3937 9.747898 TTGGTATACAAAGCCTATAAATATGGG 57.252 33.333 5.01 0.00 35.79 4.00
3862 3938 9.118367 TGGTATACAAAGCCTATAAATATGGGA 57.882 33.333 5.01 0.00 36.52 4.37
3863 3939 9.969001 GGTATACAAAGCCTATAAATATGGGAA 57.031 33.333 5.01 0.00 36.52 3.97
3867 3943 8.465273 ACAAAGCCTATAAATATGGGAAGAAC 57.535 34.615 6.98 0.00 36.52 3.01
3868 3944 7.505923 ACAAAGCCTATAAATATGGGAAGAACC 59.494 37.037 6.98 0.00 36.52 3.62
3878 3954 3.863120 GGAAGAACCCCAACCCTTT 57.137 52.632 0.00 0.00 0.00 3.11
3879 3955 1.629043 GGAAGAACCCCAACCCTTTC 58.371 55.000 0.00 0.00 0.00 2.62
3880 3956 1.133294 GGAAGAACCCCAACCCTTTCA 60.133 52.381 0.00 0.00 0.00 2.69
3881 3957 2.673258 GAAGAACCCCAACCCTTTCAA 58.327 47.619 0.00 0.00 0.00 2.69
3882 3958 2.082140 AGAACCCCAACCCTTTCAAC 57.918 50.000 0.00 0.00 0.00 3.18
3883 3959 1.289530 AGAACCCCAACCCTTTCAACA 59.710 47.619 0.00 0.00 0.00 3.33
3884 3960 1.686587 GAACCCCAACCCTTTCAACAG 59.313 52.381 0.00 0.00 0.00 3.16
3885 3961 0.105709 ACCCCAACCCTTTCAACAGG 60.106 55.000 0.00 0.00 0.00 4.00
3892 3968 3.346426 CCTTTCAACAGGGGACAGG 57.654 57.895 0.00 0.00 0.00 4.00
3893 3969 0.478507 CCTTTCAACAGGGGACAGGT 59.521 55.000 0.00 0.00 29.51 4.00
3894 3970 1.609208 CTTTCAACAGGGGACAGGTG 58.391 55.000 0.00 0.00 35.55 4.00
3895 3971 1.142870 CTTTCAACAGGGGACAGGTGA 59.857 52.381 0.00 0.00 42.37 4.02
3896 3972 2.938301 TCAACAGGGGACAGGTGAA 58.062 52.632 0.00 0.00 40.99 3.18
3897 3973 0.472471 TCAACAGGGGACAGGTGAAC 59.528 55.000 0.00 0.00 40.99 3.18
3898 3974 0.537371 CAACAGGGGACAGGTGAACC 60.537 60.000 0.00 0.00 36.50 3.62
3899 3975 0.991355 AACAGGGGACAGGTGAACCA 60.991 55.000 1.62 0.00 38.89 3.67
3900 3976 1.073199 CAGGGGACAGGTGAACCAC 59.927 63.158 1.62 0.00 38.89 4.16
3901 3977 2.032071 GGGGACAGGTGAACCACG 59.968 66.667 1.62 0.00 38.89 4.94
3902 3978 2.814835 GGGGACAGGTGAACCACGT 61.815 63.158 1.62 0.00 38.89 4.49
3903 3979 1.147600 GGGACAGGTGAACCACGTT 59.852 57.895 1.62 0.00 38.89 3.99
3904 3980 0.393820 GGGACAGGTGAACCACGTTA 59.606 55.000 1.62 0.00 38.89 3.18
3905 3981 1.202675 GGGACAGGTGAACCACGTTAA 60.203 52.381 1.62 0.00 38.89 2.01
3906 3982 1.869132 GGACAGGTGAACCACGTTAAC 59.131 52.381 1.62 0.00 38.89 2.01
3907 3983 1.523934 GACAGGTGAACCACGTTAACG 59.476 52.381 25.68 25.68 46.33 3.18
3918 3994 3.900446 CGTTAACGTGGAGGAGGTT 57.100 52.632 19.75 0.00 36.61 3.50
3919 3995 1.425412 CGTTAACGTGGAGGAGGTTG 58.575 55.000 19.75 0.00 34.50 3.77
3920 3996 1.000060 CGTTAACGTGGAGGAGGTTGA 60.000 52.381 19.75 0.00 34.50 3.18
3921 3997 2.546373 CGTTAACGTGGAGGAGGTTGAA 60.546 50.000 19.75 0.00 34.50 2.69
3922 3998 3.064931 GTTAACGTGGAGGAGGTTGAAG 58.935 50.000 0.00 0.00 34.50 3.02
3923 3999 0.250338 AACGTGGAGGAGGTTGAAGC 60.250 55.000 0.00 0.00 31.38 3.86
3924 4000 1.376037 CGTGGAGGAGGTTGAAGCC 60.376 63.158 0.00 0.00 0.00 4.35
3925 4001 1.002011 GTGGAGGAGGTTGAAGCCC 60.002 63.158 0.00 0.00 0.00 5.19
3926 4002 1.463214 TGGAGGAGGTTGAAGCCCA 60.463 57.895 5.05 0.00 0.00 5.36
3927 4003 1.065410 TGGAGGAGGTTGAAGCCCAA 61.065 55.000 5.05 0.00 0.00 4.12
3935 4011 2.657297 TTGAAGCCCAACCAGATGC 58.343 52.632 0.00 0.00 0.00 3.91
3936 4012 0.178967 TTGAAGCCCAACCAGATGCA 60.179 50.000 0.00 0.00 0.00 3.96
3937 4013 0.609957 TGAAGCCCAACCAGATGCAG 60.610 55.000 0.00 0.00 0.00 4.41
3938 4014 0.610232 GAAGCCCAACCAGATGCAGT 60.610 55.000 0.00 0.00 0.00 4.40
3939 4015 0.698238 AAGCCCAACCAGATGCAGTA 59.302 50.000 0.00 0.00 0.00 2.74
3940 4016 0.698238 AGCCCAACCAGATGCAGTAA 59.302 50.000 0.00 0.00 0.00 2.24
3941 4017 1.285962 AGCCCAACCAGATGCAGTAAT 59.714 47.619 0.00 0.00 0.00 1.89
3942 4018 2.509548 AGCCCAACCAGATGCAGTAATA 59.490 45.455 0.00 0.00 0.00 0.98
3943 4019 2.880890 GCCCAACCAGATGCAGTAATAG 59.119 50.000 0.00 0.00 0.00 1.73
3944 4020 3.480470 CCCAACCAGATGCAGTAATAGG 58.520 50.000 0.00 0.00 0.00 2.57
3945 4021 3.117888 CCCAACCAGATGCAGTAATAGGT 60.118 47.826 0.00 0.00 0.00 3.08
3946 4022 4.102524 CCCAACCAGATGCAGTAATAGGTA 59.897 45.833 0.00 0.00 0.00 3.08
3947 4023 5.397447 CCCAACCAGATGCAGTAATAGGTAA 60.397 44.000 0.00 0.00 0.00 2.85
3948 4024 5.760253 CCAACCAGATGCAGTAATAGGTAAG 59.240 44.000 0.00 0.00 0.00 2.34
3949 4025 6.349300 CAACCAGATGCAGTAATAGGTAAGT 58.651 40.000 0.00 0.00 0.00 2.24
3950 4026 6.561519 ACCAGATGCAGTAATAGGTAAGTT 57.438 37.500 0.00 0.00 0.00 2.66
3951 4027 6.958767 ACCAGATGCAGTAATAGGTAAGTTT 58.041 36.000 0.00 0.00 0.00 2.66
3952 4028 7.402862 ACCAGATGCAGTAATAGGTAAGTTTT 58.597 34.615 0.00 0.00 0.00 2.43
3953 4029 7.888546 ACCAGATGCAGTAATAGGTAAGTTTTT 59.111 33.333 0.00 0.00 0.00 1.94
3954 4030 8.184192 CCAGATGCAGTAATAGGTAAGTTTTTG 58.816 37.037 0.00 0.00 0.00 2.44
3955 4031 8.184192 CAGATGCAGTAATAGGTAAGTTTTTGG 58.816 37.037 0.00 0.00 0.00 3.28
3956 4032 7.888546 AGATGCAGTAATAGGTAAGTTTTTGGT 59.111 33.333 0.00 0.00 0.00 3.67
3957 4033 7.826918 TGCAGTAATAGGTAAGTTTTTGGTT 57.173 32.000 0.00 0.00 0.00 3.67
3958 4034 8.921353 TGCAGTAATAGGTAAGTTTTTGGTTA 57.079 30.769 0.00 0.00 0.00 2.85
3959 4035 9.352191 TGCAGTAATAGGTAAGTTTTTGGTTAA 57.648 29.630 0.00 0.00 0.00 2.01
3960 4036 9.836076 GCAGTAATAGGTAAGTTTTTGGTTAAG 57.164 33.333 0.00 0.00 0.00 1.85
3971 4047 8.642908 AAGTTTTTGGTTAAGTCATTTACTGC 57.357 30.769 0.00 0.00 38.88 4.40
3972 4048 7.777095 AGTTTTTGGTTAAGTCATTTACTGCA 58.223 30.769 0.00 0.00 38.88 4.41
3973 4049 7.920682 AGTTTTTGGTTAAGTCATTTACTGCAG 59.079 33.333 13.48 13.48 38.88 4.41
3974 4050 6.952773 TTTGGTTAAGTCATTTACTGCAGT 57.047 33.333 25.12 25.12 38.88 4.40
3975 4051 6.554334 TTGGTTAAGTCATTTACTGCAGTC 57.446 37.500 25.56 7.85 38.88 3.51
3976 4052 4.688879 TGGTTAAGTCATTTACTGCAGTCG 59.311 41.667 25.56 10.81 38.88 4.18
3977 4053 4.689345 GGTTAAGTCATTTACTGCAGTCGT 59.311 41.667 25.56 8.64 38.88 4.34
3978 4054 5.865552 GGTTAAGTCATTTACTGCAGTCGTA 59.134 40.000 25.56 10.35 38.88 3.43
3979 4055 6.183360 GGTTAAGTCATTTACTGCAGTCGTAC 60.183 42.308 25.56 15.09 38.88 3.67
3980 4056 4.785511 AGTCATTTACTGCAGTCGTACT 57.214 40.909 25.56 17.04 36.93 2.73
3981 4057 5.135508 AGTCATTTACTGCAGTCGTACTT 57.864 39.130 25.56 0.00 36.93 2.24
3982 4058 5.539048 AGTCATTTACTGCAGTCGTACTTT 58.461 37.500 25.56 2.90 36.93 2.66
3983 4059 5.989777 AGTCATTTACTGCAGTCGTACTTTT 59.010 36.000 25.56 1.33 36.93 2.27
3984 4060 6.145696 AGTCATTTACTGCAGTCGTACTTTTC 59.854 38.462 25.56 7.10 36.93 2.29
3985 4061 4.959631 TTTACTGCAGTCGTACTTTTCG 57.040 40.909 25.56 0.00 0.00 3.46
3986 4062 2.787601 ACTGCAGTCGTACTTTTCGA 57.212 45.000 15.25 0.00 34.91 3.71
3987 4063 3.299340 ACTGCAGTCGTACTTTTCGAT 57.701 42.857 15.25 0.00 39.45 3.59
3988 4064 4.430137 ACTGCAGTCGTACTTTTCGATA 57.570 40.909 15.25 0.00 39.45 2.92
3989 4065 4.164294 ACTGCAGTCGTACTTTTCGATAC 58.836 43.478 15.25 0.00 39.45 2.24
3990 4066 4.082895 ACTGCAGTCGTACTTTTCGATACT 60.083 41.667 15.25 0.00 39.45 2.12
3991 4067 4.409570 TGCAGTCGTACTTTTCGATACTC 58.590 43.478 0.00 0.00 39.45 2.59
3992 4068 3.477802 GCAGTCGTACTTTTCGATACTCG 59.522 47.826 0.00 0.00 42.10 4.18
3993 4069 4.645956 CAGTCGTACTTTTCGATACTCGT 58.354 43.478 0.00 0.00 41.35 4.18
3994 4070 4.491241 CAGTCGTACTTTTCGATACTCGTG 59.509 45.833 0.00 0.00 41.35 4.35
3995 4071 3.236980 GTCGTACTTTTCGATACTCGTGC 59.763 47.826 0.00 0.00 41.35 5.34
3996 4072 3.120234 TCGTACTTTTCGATACTCGTGCA 60.120 43.478 0.00 0.00 41.35 4.57
3997 4073 3.789756 CGTACTTTTCGATACTCGTGCAT 59.210 43.478 0.00 0.00 41.35 3.96
3998 4074 4.086227 CGTACTTTTCGATACTCGTGCATC 60.086 45.833 0.00 0.00 41.35 3.91
3999 4075 2.852413 ACTTTTCGATACTCGTGCATCG 59.148 45.455 12.68 12.68 44.17 3.84
4000 4076 1.197055 TTTCGATACTCGTGCATCGC 58.803 50.000 13.79 0.00 42.87 4.58
4001 4077 0.099791 TTCGATACTCGTGCATCGCA 59.900 50.000 13.79 2.18 42.87 5.10
4002 4078 0.310854 TCGATACTCGTGCATCGCAT 59.689 50.000 13.79 0.00 42.87 4.73
4003 4079 1.131771 CGATACTCGTGCATCGCATT 58.868 50.000 7.12 0.00 41.91 3.56
4004 4080 1.123217 CGATACTCGTGCATCGCATTC 59.877 52.381 7.12 0.00 41.91 2.67
4005 4081 2.127251 GATACTCGTGCATCGCATTCA 58.873 47.619 0.00 0.00 41.91 2.57
4006 4082 2.223537 TACTCGTGCATCGCATTCAT 57.776 45.000 0.00 0.00 41.91 2.57
4007 4083 2.223537 ACTCGTGCATCGCATTCATA 57.776 45.000 0.00 0.00 41.91 2.15
4008 4084 1.860950 ACTCGTGCATCGCATTCATAC 59.139 47.619 0.00 0.00 41.91 2.39
4009 4085 1.860326 CTCGTGCATCGCATTCATACA 59.140 47.619 0.00 0.00 41.91 2.29
4010 4086 2.477754 CTCGTGCATCGCATTCATACAT 59.522 45.455 0.00 0.00 41.91 2.29
4011 4087 3.648009 TCGTGCATCGCATTCATACATA 58.352 40.909 0.00 0.00 41.91 2.29
4012 4088 4.244862 TCGTGCATCGCATTCATACATAT 58.755 39.130 0.00 0.00 41.91 1.78
4013 4089 4.327087 TCGTGCATCGCATTCATACATATC 59.673 41.667 0.00 0.00 41.91 1.63
4014 4090 4.091800 CGTGCATCGCATTCATACATATCA 59.908 41.667 0.00 0.00 41.91 2.15
4015 4091 5.389725 CGTGCATCGCATTCATACATATCAA 60.390 40.000 0.00 0.00 41.91 2.57
4016 4092 6.019762 GTGCATCGCATTCATACATATCAAG 58.980 40.000 0.00 0.00 41.91 3.02
4017 4093 5.122711 TGCATCGCATTCATACATATCAAGG 59.877 40.000 0.00 0.00 31.71 3.61
4018 4094 5.448225 GCATCGCATTCATACATATCAAGGG 60.448 44.000 0.00 0.00 0.00 3.95
4019 4095 4.578871 TCGCATTCATACATATCAAGGGG 58.421 43.478 0.00 0.00 0.00 4.79
4020 4096 4.285775 TCGCATTCATACATATCAAGGGGA 59.714 41.667 0.00 0.00 0.00 4.81
4021 4097 5.045651 TCGCATTCATACATATCAAGGGGAT 60.046 40.000 0.00 0.00 40.14 3.85
4022 4098 5.649395 CGCATTCATACATATCAAGGGGATT 59.351 40.000 0.00 0.00 37.44 3.01
4023 4099 6.151648 CGCATTCATACATATCAAGGGGATTT 59.848 38.462 0.00 0.00 37.44 2.17
4024 4100 7.318141 GCATTCATACATATCAAGGGGATTTG 58.682 38.462 0.00 0.00 39.84 2.32
4025 4101 7.039504 GCATTCATACATATCAAGGGGATTTGT 60.040 37.037 5.87 5.87 45.96 2.83
4026 4102 7.822161 TTCATACATATCAAGGGGATTTGTG 57.178 36.000 9.62 0.00 44.54 3.33
4027 4103 6.306199 TCATACATATCAAGGGGATTTGTGG 58.694 40.000 9.62 4.03 44.54 4.17
4028 4104 4.879295 ACATATCAAGGGGATTTGTGGA 57.121 40.909 0.00 0.00 43.64 4.02
4029 4105 5.408079 ACATATCAAGGGGATTTGTGGAT 57.592 39.130 0.00 0.00 43.64 3.41
4030 4106 6.529084 ACATATCAAGGGGATTTGTGGATA 57.471 37.500 0.00 0.00 43.64 2.59
4031 4107 6.921412 ACATATCAAGGGGATTTGTGGATAA 58.079 36.000 0.00 0.00 43.64 1.75
4032 4108 7.006509 ACATATCAAGGGGATTTGTGGATAAG 58.993 38.462 0.00 0.00 43.64 1.73
4033 4109 4.946160 TCAAGGGGATTTGTGGATAAGT 57.054 40.909 0.00 0.00 0.00 2.24
4034 4110 6.590656 ATCAAGGGGATTTGTGGATAAGTA 57.409 37.500 0.00 0.00 29.81 2.24
4035 4111 6.590656 TCAAGGGGATTTGTGGATAAGTAT 57.409 37.500 0.00 0.00 0.00 2.12
4036 4112 7.699709 TCAAGGGGATTTGTGGATAAGTATA 57.300 36.000 0.00 0.00 0.00 1.47
4037 4113 8.108378 TCAAGGGGATTTGTGGATAAGTATAA 57.892 34.615 0.00 0.00 0.00 0.98
4038 4114 8.561769 TCAAGGGGATTTGTGGATAAGTATAAA 58.438 33.333 0.00 0.00 0.00 1.40
4039 4115 8.630037 CAAGGGGATTTGTGGATAAGTATAAAC 58.370 37.037 0.00 0.00 0.00 2.01
4040 4116 8.114301 AGGGGATTTGTGGATAAGTATAAACT 57.886 34.615 0.00 0.00 37.65 2.66
4041 4117 7.998964 AGGGGATTTGTGGATAAGTATAAACTG 59.001 37.037 0.00 0.00 35.62 3.16
4042 4118 7.255486 GGGGATTTGTGGATAAGTATAAACTGC 60.255 40.741 0.00 0.00 35.62 4.40
4043 4119 7.255486 GGGATTTGTGGATAAGTATAAACTGCC 60.255 40.741 0.00 0.00 35.62 4.85
4044 4120 7.255486 GGATTTGTGGATAAGTATAAACTGCCC 60.255 40.741 0.00 0.00 35.62 5.36
4045 4121 5.702065 TGTGGATAAGTATAAACTGCCCA 57.298 39.130 0.00 0.00 35.62 5.36
4046 4122 5.433526 TGTGGATAAGTATAAACTGCCCAC 58.566 41.667 0.00 0.00 43.45 4.61
4047 4123 4.820173 GTGGATAAGTATAAACTGCCCACC 59.180 45.833 0.00 0.00 40.61 4.61
4048 4124 4.475381 TGGATAAGTATAAACTGCCCACCA 59.525 41.667 0.00 0.00 35.62 4.17
4049 4125 5.044772 TGGATAAGTATAAACTGCCCACCAA 60.045 40.000 0.00 0.00 35.62 3.67
4050 4126 5.889289 GGATAAGTATAAACTGCCCACCAAA 59.111 40.000 0.00 0.00 35.62 3.28
4051 4127 6.039382 GGATAAGTATAAACTGCCCACCAAAG 59.961 42.308 0.00 0.00 35.62 2.77
4052 4128 4.382386 AGTATAAACTGCCCACCAAAGT 57.618 40.909 0.00 0.00 33.57 2.66
4053 4129 4.736473 AGTATAAACTGCCCACCAAAGTT 58.264 39.130 0.00 0.00 35.70 2.66
4054 4130 4.765339 AGTATAAACTGCCCACCAAAGTTC 59.235 41.667 0.00 0.00 33.09 3.01
4055 4131 2.159179 AAACTGCCCACCAAAGTTCT 57.841 45.000 0.00 0.00 33.09 3.01
4056 4132 2.159179 AACTGCCCACCAAAGTTCTT 57.841 45.000 0.00 0.00 27.92 2.52
4057 4133 3.306472 AACTGCCCACCAAAGTTCTTA 57.694 42.857 0.00 0.00 27.92 2.10
4058 4134 2.863809 ACTGCCCACCAAAGTTCTTAG 58.136 47.619 0.00 0.00 0.00 2.18
4059 4135 2.174854 ACTGCCCACCAAAGTTCTTAGT 59.825 45.455 0.00 0.00 0.00 2.24
4060 4136 3.393278 ACTGCCCACCAAAGTTCTTAGTA 59.607 43.478 0.00 0.00 0.00 1.82
4061 4137 3.746940 TGCCCACCAAAGTTCTTAGTAC 58.253 45.455 0.00 0.00 0.00 2.73
4062 4138 3.136809 TGCCCACCAAAGTTCTTAGTACA 59.863 43.478 0.00 0.00 0.00 2.90
4063 4139 3.501062 GCCCACCAAAGTTCTTAGTACAC 59.499 47.826 0.00 0.00 0.00 2.90
4064 4140 4.070009 CCCACCAAAGTTCTTAGTACACC 58.930 47.826 0.00 0.00 0.00 4.16
4065 4141 4.202430 CCCACCAAAGTTCTTAGTACACCT 60.202 45.833 0.00 0.00 0.00 4.00
4066 4142 5.012354 CCCACCAAAGTTCTTAGTACACCTA 59.988 44.000 0.00 0.00 0.00 3.08
4067 4143 6.296259 CCCACCAAAGTTCTTAGTACACCTAT 60.296 42.308 0.00 0.00 0.00 2.57
4068 4144 6.594159 CCACCAAAGTTCTTAGTACACCTATG 59.406 42.308 0.00 0.00 0.00 2.23
4069 4145 7.159372 CACCAAAGTTCTTAGTACACCTATGT 58.841 38.462 0.00 0.00 43.30 2.29
4070 4146 7.660208 CACCAAAGTTCTTAGTACACCTATGTT 59.340 37.037 0.00 0.00 40.48 2.71
4071 4147 8.873144 ACCAAAGTTCTTAGTACACCTATGTTA 58.127 33.333 0.00 0.00 40.48 2.41
4072 4148 9.367444 CCAAAGTTCTTAGTACACCTATGTTAG 57.633 37.037 0.00 0.00 40.48 2.34
4073 4149 9.924650 CAAAGTTCTTAGTACACCTATGTTAGT 57.075 33.333 0.00 0.00 40.48 2.24
4077 4153 9.513727 GTTCTTAGTACACCTATGTTAGTAAGC 57.486 37.037 0.00 0.00 40.48 3.09
4078 4154 9.471702 TTCTTAGTACACCTATGTTAGTAAGCT 57.528 33.333 0.00 0.00 40.48 3.74
4079 4155 9.118300 TCTTAGTACACCTATGTTAGTAAGCTC 57.882 37.037 0.00 0.00 40.48 4.09
4080 4156 6.374565 AGTACACCTATGTTAGTAAGCTCG 57.625 41.667 0.00 0.00 40.48 5.03
4081 4157 4.043037 ACACCTATGTTAGTAAGCTCGC 57.957 45.455 0.00 0.00 34.46 5.03
4082 4158 3.181478 ACACCTATGTTAGTAAGCTCGCC 60.181 47.826 0.00 0.00 34.46 5.54
4083 4159 3.028850 ACCTATGTTAGTAAGCTCGCCA 58.971 45.455 0.00 0.00 0.00 5.69
4084 4160 3.068307 ACCTATGTTAGTAAGCTCGCCAG 59.932 47.826 0.00 0.00 0.00 4.85
4085 4161 2.604046 ATGTTAGTAAGCTCGCCAGG 57.396 50.000 0.00 0.00 0.00 4.45
4086 4162 1.552578 TGTTAGTAAGCTCGCCAGGA 58.447 50.000 0.00 0.00 0.00 3.86
4087 4163 1.476891 TGTTAGTAAGCTCGCCAGGAG 59.523 52.381 0.00 0.00 46.06 3.69
4094 4170 3.926003 CTCGCCAGGAGCAGAGTA 58.074 61.111 0.00 0.00 44.04 2.59
4095 4171 2.424474 CTCGCCAGGAGCAGAGTAT 58.576 57.895 0.00 0.00 44.04 2.12
4096 4172 1.610363 CTCGCCAGGAGCAGAGTATA 58.390 55.000 0.00 0.00 44.04 1.47
4097 4173 2.166829 CTCGCCAGGAGCAGAGTATAT 58.833 52.381 0.00 0.00 44.04 0.86
4098 4174 1.889170 TCGCCAGGAGCAGAGTATATG 59.111 52.381 0.00 0.00 44.04 1.78
4099 4175 1.067283 CGCCAGGAGCAGAGTATATGG 60.067 57.143 0.00 0.00 44.04 2.74
4100 4176 1.338579 GCCAGGAGCAGAGTATATGGC 60.339 57.143 0.00 0.00 44.27 4.40
4101 4177 1.973515 CCAGGAGCAGAGTATATGGCA 59.026 52.381 0.00 0.00 0.00 4.92
4102 4178 2.369860 CCAGGAGCAGAGTATATGGCAA 59.630 50.000 0.00 0.00 0.00 4.52
4103 4179 3.556633 CCAGGAGCAGAGTATATGGCAAG 60.557 52.174 0.00 0.00 0.00 4.01
4104 4180 2.038295 AGGAGCAGAGTATATGGCAAGC 59.962 50.000 0.00 0.00 0.00 4.01
4105 4181 2.421619 GAGCAGAGTATATGGCAAGCC 58.578 52.381 3.61 3.61 0.00 4.35
4114 4190 4.950200 TGGCAAGCCAAGGATGTT 57.050 50.000 12.11 0.00 44.12 2.71
4115 4191 3.146218 TGGCAAGCCAAGGATGTTT 57.854 47.368 12.11 0.00 44.12 2.83
4116 4192 1.422531 TGGCAAGCCAAGGATGTTTT 58.577 45.000 12.11 0.00 44.12 2.43
4117 4193 1.344114 TGGCAAGCCAAGGATGTTTTC 59.656 47.619 12.11 0.00 44.12 2.29
4118 4194 1.344114 GGCAAGCCAAGGATGTTTTCA 59.656 47.619 6.14 0.00 35.81 2.69
4119 4195 2.611224 GGCAAGCCAAGGATGTTTTCAG 60.611 50.000 6.14 0.00 35.81 3.02
4120 4196 2.297033 GCAAGCCAAGGATGTTTTCAGA 59.703 45.455 0.00 0.00 0.00 3.27
4121 4197 3.056322 GCAAGCCAAGGATGTTTTCAGAT 60.056 43.478 0.00 0.00 0.00 2.90
4122 4198 4.491676 CAAGCCAAGGATGTTTTCAGATG 58.508 43.478 0.00 0.00 0.00 2.90
4123 4199 2.494870 AGCCAAGGATGTTTTCAGATGC 59.505 45.455 0.00 0.00 0.00 3.91
4124 4200 2.417787 GCCAAGGATGTTTTCAGATGCC 60.418 50.000 0.00 0.00 0.00 4.40
4125 4201 2.827322 CCAAGGATGTTTTCAGATGCCA 59.173 45.455 0.00 0.00 0.00 4.92
4126 4202 3.449737 CCAAGGATGTTTTCAGATGCCAT 59.550 43.478 0.00 0.00 0.00 4.40
4127 4203 4.081309 CCAAGGATGTTTTCAGATGCCATT 60.081 41.667 0.00 0.00 0.00 3.16
4128 4204 4.730949 AGGATGTTTTCAGATGCCATTG 57.269 40.909 0.00 0.00 0.00 2.82
4129 4205 4.346730 AGGATGTTTTCAGATGCCATTGA 58.653 39.130 0.00 0.00 0.00 2.57
4130 4206 4.159135 AGGATGTTTTCAGATGCCATTGAC 59.841 41.667 0.00 0.00 0.00 3.18
4131 4207 3.940209 TGTTTTCAGATGCCATTGACC 57.060 42.857 0.00 0.00 0.00 4.02
4132 4208 3.229293 TGTTTTCAGATGCCATTGACCA 58.771 40.909 0.00 0.00 0.00 4.02
4133 4209 3.833650 TGTTTTCAGATGCCATTGACCAT 59.166 39.130 0.00 0.00 0.00 3.55
4134 4210 5.015515 TGTTTTCAGATGCCATTGACCATA 58.984 37.500 0.00 0.00 0.00 2.74
4135 4211 5.657745 TGTTTTCAGATGCCATTGACCATAT 59.342 36.000 0.00 0.00 0.00 1.78
4136 4212 5.777850 TTTCAGATGCCATTGACCATATG 57.222 39.130 0.00 0.00 33.27 1.78
4137 4213 4.442401 TCAGATGCCATTGACCATATGT 57.558 40.909 1.24 0.00 33.62 2.29
4138 4214 5.565455 TCAGATGCCATTGACCATATGTA 57.435 39.130 1.24 0.00 33.62 2.29
4139 4215 5.554070 TCAGATGCCATTGACCATATGTAG 58.446 41.667 1.24 0.00 33.62 2.74
4140 4216 4.698780 CAGATGCCATTGACCATATGTAGG 59.301 45.833 1.24 0.00 0.00 3.18
4141 4217 2.862541 TGCCATTGACCATATGTAGGC 58.137 47.619 1.24 6.23 41.15 3.93
4142 4218 2.862541 GCCATTGACCATATGTAGGCA 58.137 47.619 1.24 0.00 40.50 4.75
4143 4219 3.181430 TGCCATTGACCATATGTAGGCAT 60.181 43.478 12.81 0.00 45.10 4.40
4144 4220 3.192001 GCCATTGACCATATGTAGGCATG 59.808 47.826 1.24 0.00 40.50 4.06
4145 4221 4.401022 CCATTGACCATATGTAGGCATGT 58.599 43.478 1.24 0.00 36.58 3.21
4146 4222 4.828939 CCATTGACCATATGTAGGCATGTT 59.171 41.667 1.24 0.00 36.58 2.71
4147 4223 5.302568 CCATTGACCATATGTAGGCATGTTT 59.697 40.000 1.24 0.00 36.58 2.83
4148 4224 6.183360 CCATTGACCATATGTAGGCATGTTTT 60.183 38.462 1.24 0.00 36.58 2.43
4149 4225 6.449635 TTGACCATATGTAGGCATGTTTTC 57.550 37.500 1.24 0.00 36.58 2.29
4150 4226 4.887071 TGACCATATGTAGGCATGTTTTCC 59.113 41.667 1.24 0.00 36.58 3.13
4151 4227 4.215109 ACCATATGTAGGCATGTTTTCCC 58.785 43.478 1.24 0.00 36.58 3.97
4152 4228 3.573967 CCATATGTAGGCATGTTTTCCCC 59.426 47.826 1.24 0.00 36.58 4.81
4153 4229 4.473444 CATATGTAGGCATGTTTTCCCCT 58.527 43.478 0.00 0.00 36.58 4.79
4154 4230 2.990740 TGTAGGCATGTTTTCCCCTT 57.009 45.000 0.00 0.00 0.00 3.95
4155 4231 4.601406 ATGTAGGCATGTTTTCCCCTTA 57.399 40.909 0.00 0.00 33.37 2.69
4156 4232 3.963129 TGTAGGCATGTTTTCCCCTTAG 58.037 45.455 0.00 0.00 0.00 2.18
4157 4233 3.589735 TGTAGGCATGTTTTCCCCTTAGA 59.410 43.478 0.00 0.00 0.00 2.10
4158 4234 4.229582 TGTAGGCATGTTTTCCCCTTAGAT 59.770 41.667 0.00 0.00 0.00 1.98
4159 4235 3.903467 AGGCATGTTTTCCCCTTAGATC 58.097 45.455 0.00 0.00 0.00 2.75
4160 4236 3.529319 AGGCATGTTTTCCCCTTAGATCT 59.471 43.478 0.00 0.00 0.00 2.75
4161 4237 4.726825 AGGCATGTTTTCCCCTTAGATCTA 59.273 41.667 0.00 0.00 0.00 1.98
4162 4238 5.193728 AGGCATGTTTTCCCCTTAGATCTAA 59.806 40.000 14.42 14.42 0.00 2.10
4163 4239 6.071320 GGCATGTTTTCCCCTTAGATCTAAT 58.929 40.000 15.47 0.00 0.00 1.73
4164 4240 7.073725 AGGCATGTTTTCCCCTTAGATCTAATA 59.926 37.037 15.47 0.00 0.00 0.98
4165 4241 7.724061 GGCATGTTTTCCCCTTAGATCTAATAA 59.276 37.037 15.47 5.80 0.00 1.40
4166 4242 9.301897 GCATGTTTTCCCCTTAGATCTAATAAT 57.698 33.333 15.47 0.00 0.00 1.28
4181 4257 8.571336 AGATCTAATAATTTTGGAATCGCAAGG 58.429 33.333 0.00 0.00 38.47 3.61
4182 4258 7.639113 TCTAATAATTTTGGAATCGCAAGGT 57.361 32.000 0.00 0.00 38.47 3.50
4184 4260 8.527810 TCTAATAATTTTGGAATCGCAAGGTTT 58.472 29.630 0.00 0.00 43.78 3.27
4185 4261 6.966435 ATAATTTTGGAATCGCAAGGTTTG 57.034 33.333 0.00 0.00 43.78 2.93
4186 4262 2.810439 TTTGGAATCGCAAGGTTTGG 57.190 45.000 0.00 0.00 43.78 3.28
4187 4263 1.988293 TTGGAATCGCAAGGTTTGGA 58.012 45.000 0.00 0.00 43.78 3.53
4188 4264 2.214376 TGGAATCGCAAGGTTTGGAT 57.786 45.000 0.00 0.00 43.78 3.41
4189 4265 1.818060 TGGAATCGCAAGGTTTGGATG 59.182 47.619 0.00 0.00 43.78 3.51
4190 4266 1.818674 GGAATCGCAAGGTTTGGATGT 59.181 47.619 0.00 0.00 43.78 3.06
4191 4267 2.415893 GGAATCGCAAGGTTTGGATGTG 60.416 50.000 0.00 0.00 43.78 3.21
4192 4268 2.198827 ATCGCAAGGTTTGGATGTGA 57.801 45.000 0.00 0.00 37.90 3.58
4193 4269 2.198827 TCGCAAGGTTTGGATGTGAT 57.801 45.000 0.00 0.00 38.47 3.06
4194 4270 2.513753 TCGCAAGGTTTGGATGTGATT 58.486 42.857 0.00 0.00 38.47 2.57
4195 4271 2.487762 TCGCAAGGTTTGGATGTGATTC 59.512 45.455 0.00 0.00 38.47 2.52
4196 4272 2.489329 CGCAAGGTTTGGATGTGATTCT 59.511 45.455 0.00 0.00 0.00 2.40
4197 4273 3.671433 CGCAAGGTTTGGATGTGATTCTG 60.671 47.826 0.00 0.00 0.00 3.02
4198 4274 3.367703 GCAAGGTTTGGATGTGATTCTGG 60.368 47.826 0.00 0.00 0.00 3.86
4199 4275 3.091633 AGGTTTGGATGTGATTCTGGG 57.908 47.619 0.00 0.00 0.00 4.45
4200 4276 2.379907 AGGTTTGGATGTGATTCTGGGT 59.620 45.455 0.00 0.00 0.00 4.51
4201 4277 2.493278 GGTTTGGATGTGATTCTGGGTG 59.507 50.000 0.00 0.00 0.00 4.61
4202 4278 3.157087 GTTTGGATGTGATTCTGGGTGT 58.843 45.455 0.00 0.00 0.00 4.16
4203 4279 2.495155 TGGATGTGATTCTGGGTGTG 57.505 50.000 0.00 0.00 0.00 3.82
4204 4280 1.004628 TGGATGTGATTCTGGGTGTGG 59.995 52.381 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
337 380 4.569943 ACGTCACCAATATGAGCATATCC 58.430 43.478 3.64 0.00 33.13 2.59
402 445 8.107399 TCGTCTTACTTCTGTCTAATCTTTCA 57.893 34.615 0.00 0.00 0.00 2.69
410 453 4.325119 ACAGCTCGTCTTACTTCTGTCTA 58.675 43.478 0.00 0.00 29.81 2.59
495 538 6.376581 GGATTTCCTTCTTGATCACTGACAAT 59.623 38.462 0.00 0.00 0.00 2.71
502 545 6.209391 TCCTTTTGGATTTCCTTCTTGATCAC 59.791 38.462 0.00 0.00 45.19 3.06
553 596 9.171877 GAGTGAAATTCATAAGTCTCAATTCCT 57.828 33.333 0.00 0.00 0.00 3.36
822 872 6.943718 TGTTACTTTCCCTATGGTTTTCGAAT 59.056 34.615 0.00 0.00 0.00 3.34
871 921 3.083293 GACTAGTTCGAAGACCAGGAGT 58.917 50.000 0.00 0.00 34.32 3.85
985 1035 2.103263 GGACCATCTGCTCTATCCGTTT 59.897 50.000 0.00 0.00 0.00 3.60
1139 1189 5.600669 AGGGAATAAAGGGATGGGAATAC 57.399 43.478 0.00 0.00 0.00 1.89
1375 1426 6.861065 ACGAAAGAATTGTAAAGAGAGCAA 57.139 33.333 0.00 0.00 0.00 3.91
1382 1433 9.413048 AGAAGAGAGTACGAAAGAATTGTAAAG 57.587 33.333 0.00 0.00 0.00 1.85
1410 1461 1.864435 GCTGACCTATCGCGTGGTAAG 60.864 57.143 20.66 20.66 37.77 2.34
1699 1754 6.763135 TCCTCCATGTGAAATAGAAAGATTCG 59.237 38.462 0.00 0.00 34.02 3.34
1748 1803 2.338984 GGGTCGCACGACAGAAGT 59.661 61.111 23.10 0.00 46.20 3.01
1794 1849 6.602278 GCCCTAAACAAATAGAATAGGAGGT 58.398 40.000 0.00 0.00 36.10 3.85
1823 1878 2.036992 GGATCGAATCAGAGTCCATGCT 59.963 50.000 0.00 0.00 0.00 3.79
1829 1884 1.033574 ACCCGGATCGAATCAGAGTC 58.966 55.000 0.73 0.00 0.00 3.36
1851 1906 4.838152 TCTCAGCGGCGGGATTGC 62.838 66.667 9.78 0.00 0.00 3.56
1885 1940 4.870021 AGCCATCTTCCTATCAAGGTTT 57.130 40.909 0.00 0.00 44.09 3.27
1936 1991 6.418819 CCATTCGCATTAATTCATCCAAAGTC 59.581 38.462 0.00 0.00 0.00 3.01
2078 2138 6.915544 GGTACGGACGTAGATGATATCATA 57.084 41.667 18.19 0.93 36.57 2.15
2292 2354 1.093496 CCCACGTCCGCTTTTATCCC 61.093 60.000 0.00 0.00 0.00 3.85
2361 2423 4.796495 GCCCGCCCATTCCGTCTT 62.796 66.667 0.00 0.00 0.00 3.01
2366 2428 3.451894 CTTGTGCCCGCCCATTCC 61.452 66.667 0.00 0.00 0.00 3.01
2423 2485 4.119862 AGGCGGCTAATATAATATGTGCG 58.880 43.478 11.03 0.00 0.00 5.34
2479 2546 2.640989 CTTGCTTGCTGCTTCGCA 59.359 55.556 0.00 4.10 43.37 5.10
2640 2708 2.472029 GGGGAAGTTGAGGAGAGATGA 58.528 52.381 0.00 0.00 0.00 2.92
2695 2763 1.660560 CTCCGAACCGTACGTGGGAT 61.661 60.000 15.21 2.38 29.94 3.85
2744 2812 8.910944 TCTTATTCGTATTAGTTGACCTAAGCT 58.089 33.333 0.00 0.00 38.99 3.74
2792 2860 2.046217 GGAGTTCGGGACCCAAGC 60.046 66.667 12.15 0.00 0.00 4.01
2903 2971 0.821711 CCTTTTGCTCGTTGGGGACA 60.822 55.000 0.00 0.00 39.83 4.02
2994 3062 4.229876 GCAGAAAATCTTCCAGTTTTCCG 58.770 43.478 6.89 0.00 42.45 4.30
3454 3525 4.086457 GGTTATGTTTGACAGGGATGGTT 58.914 43.478 0.00 0.00 0.00 3.67
3756 3832 4.525949 GGTAAGACGCCCCGCTCC 62.526 72.222 0.00 0.00 0.00 4.70
3798 3874 9.832445 AATGAAGAATAACCTTCGTGTATATGT 57.168 29.630 0.00 0.00 44.06 2.29
3861 3937 2.364324 GTTGAAAGGGTTGGGGTTCTTC 59.636 50.000 0.00 0.00 0.00 2.87
3862 3938 2.292587 TGTTGAAAGGGTTGGGGTTCTT 60.293 45.455 0.00 0.00 0.00 2.52
3863 3939 1.289530 TGTTGAAAGGGTTGGGGTTCT 59.710 47.619 0.00 0.00 0.00 3.01
3864 3940 1.686587 CTGTTGAAAGGGTTGGGGTTC 59.313 52.381 0.00 0.00 0.00 3.62
3865 3941 1.691163 CCTGTTGAAAGGGTTGGGGTT 60.691 52.381 0.00 0.00 33.28 4.11
3866 3942 0.105709 CCTGTTGAAAGGGTTGGGGT 60.106 55.000 0.00 0.00 33.28 4.95
3867 3943 2.745379 CCTGTTGAAAGGGTTGGGG 58.255 57.895 0.00 0.00 33.28 4.96
3874 3950 0.478507 ACCTGTCCCCTGTTGAAAGG 59.521 55.000 0.00 0.00 42.15 3.11
3875 3951 1.142870 TCACCTGTCCCCTGTTGAAAG 59.857 52.381 0.00 0.00 0.00 2.62
3876 3952 1.217916 TCACCTGTCCCCTGTTGAAA 58.782 50.000 0.00 0.00 0.00 2.69
3877 3953 1.133915 GTTCACCTGTCCCCTGTTGAA 60.134 52.381 0.00 0.00 0.00 2.69
3878 3954 0.472471 GTTCACCTGTCCCCTGTTGA 59.528 55.000 0.00 0.00 0.00 3.18
3879 3955 0.537371 GGTTCACCTGTCCCCTGTTG 60.537 60.000 0.00 0.00 0.00 3.33
3880 3956 0.991355 TGGTTCACCTGTCCCCTGTT 60.991 55.000 0.00 0.00 36.82 3.16
3881 3957 1.385347 TGGTTCACCTGTCCCCTGT 60.385 57.895 0.00 0.00 36.82 4.00
3882 3958 1.073199 GTGGTTCACCTGTCCCCTG 59.927 63.158 0.00 0.00 36.82 4.45
3883 3959 2.516888 CGTGGTTCACCTGTCCCCT 61.517 63.158 0.00 0.00 36.82 4.79
3884 3960 2.032071 CGTGGTTCACCTGTCCCC 59.968 66.667 0.00 0.00 36.82 4.81
3885 3961 0.393820 TAACGTGGTTCACCTGTCCC 59.606 55.000 0.00 0.00 36.82 4.46
3886 3962 1.869132 GTTAACGTGGTTCACCTGTCC 59.131 52.381 0.00 0.00 36.82 4.02
3887 3963 1.523934 CGTTAACGTGGTTCACCTGTC 59.476 52.381 19.75 0.00 36.82 3.51
3888 3964 1.574134 CGTTAACGTGGTTCACCTGT 58.426 50.000 19.75 0.00 36.82 4.00
3900 3976 1.000060 TCAACCTCCTCCACGTTAACG 60.000 52.381 25.68 25.68 46.33 3.18
3901 3977 2.825861 TCAACCTCCTCCACGTTAAC 57.174 50.000 0.00 0.00 0.00 2.01
3902 3978 2.549349 GCTTCAACCTCCTCCACGTTAA 60.549 50.000 0.00 0.00 0.00 2.01
3903 3979 1.001633 GCTTCAACCTCCTCCACGTTA 59.998 52.381 0.00 0.00 0.00 3.18
3904 3980 0.250338 GCTTCAACCTCCTCCACGTT 60.250 55.000 0.00 0.00 0.00 3.99
3905 3981 1.371558 GCTTCAACCTCCTCCACGT 59.628 57.895 0.00 0.00 0.00 4.49
3906 3982 1.376037 GGCTTCAACCTCCTCCACG 60.376 63.158 0.00 0.00 0.00 4.94
3907 3983 1.002011 GGGCTTCAACCTCCTCCAC 60.002 63.158 0.00 0.00 0.00 4.02
3908 3984 1.065410 TTGGGCTTCAACCTCCTCCA 61.065 55.000 0.00 0.00 0.00 3.86
3909 3985 1.767692 TTGGGCTTCAACCTCCTCC 59.232 57.895 0.00 0.00 0.00 4.30
3917 3993 0.178967 TGCATCTGGTTGGGCTTCAA 60.179 50.000 0.00 0.00 0.00 2.69
3918 3994 0.609957 CTGCATCTGGTTGGGCTTCA 60.610 55.000 0.00 0.00 0.00 3.02
3919 3995 0.610232 ACTGCATCTGGTTGGGCTTC 60.610 55.000 0.00 0.00 0.00 3.86
3920 3996 0.698238 TACTGCATCTGGTTGGGCTT 59.302 50.000 0.00 0.00 0.00 4.35
3921 3997 0.698238 TTACTGCATCTGGTTGGGCT 59.302 50.000 0.00 0.00 0.00 5.19
3922 3998 1.767759 ATTACTGCATCTGGTTGGGC 58.232 50.000 0.00 0.00 0.00 5.36
3923 3999 3.117888 ACCTATTACTGCATCTGGTTGGG 60.118 47.826 0.00 0.00 0.00 4.12
3924 4000 4.156455 ACCTATTACTGCATCTGGTTGG 57.844 45.455 0.00 0.00 0.00 3.77
3925 4001 6.349300 ACTTACCTATTACTGCATCTGGTTG 58.651 40.000 0.00 0.00 0.00 3.77
3926 4002 6.561519 ACTTACCTATTACTGCATCTGGTT 57.438 37.500 0.00 0.00 0.00 3.67
3927 4003 6.561519 AACTTACCTATTACTGCATCTGGT 57.438 37.500 0.00 0.00 0.00 4.00
3928 4004 7.865706 AAAACTTACCTATTACTGCATCTGG 57.134 36.000 0.00 0.00 0.00 3.86
3929 4005 8.184192 CCAAAAACTTACCTATTACTGCATCTG 58.816 37.037 0.00 0.00 0.00 2.90
3930 4006 7.888546 ACCAAAAACTTACCTATTACTGCATCT 59.111 33.333 0.00 0.00 0.00 2.90
3931 4007 8.051901 ACCAAAAACTTACCTATTACTGCATC 57.948 34.615 0.00 0.00 0.00 3.91
3932 4008 8.417273 AACCAAAAACTTACCTATTACTGCAT 57.583 30.769 0.00 0.00 0.00 3.96
3933 4009 7.826918 AACCAAAAACTTACCTATTACTGCA 57.173 32.000 0.00 0.00 0.00 4.41
3934 4010 9.836076 CTTAACCAAAAACTTACCTATTACTGC 57.164 33.333 0.00 0.00 0.00 4.40
3945 4021 9.738832 GCAGTAAATGACTTAACCAAAAACTTA 57.261 29.630 0.00 0.00 35.64 2.24
3946 4022 8.254508 TGCAGTAAATGACTTAACCAAAAACTT 58.745 29.630 0.00 0.00 35.64 2.66
3947 4023 7.777095 TGCAGTAAATGACTTAACCAAAAACT 58.223 30.769 0.00 0.00 35.64 2.66
3948 4024 7.704899 ACTGCAGTAAATGACTTAACCAAAAAC 59.295 33.333 20.16 0.00 35.64 2.43
3949 4025 7.777095 ACTGCAGTAAATGACTTAACCAAAAA 58.223 30.769 20.16 0.00 35.64 1.94
3950 4026 7.341445 ACTGCAGTAAATGACTTAACCAAAA 57.659 32.000 20.16 0.00 35.64 2.44
3951 4027 6.293190 CGACTGCAGTAAATGACTTAACCAAA 60.293 38.462 21.73 0.00 35.64 3.28
3952 4028 5.178623 CGACTGCAGTAAATGACTTAACCAA 59.821 40.000 21.73 0.00 35.64 3.67
3953 4029 4.688879 CGACTGCAGTAAATGACTTAACCA 59.311 41.667 21.73 0.00 35.64 3.67
3954 4030 4.689345 ACGACTGCAGTAAATGACTTAACC 59.311 41.667 21.73 0.95 35.64 2.85
3955 4031 5.840940 ACGACTGCAGTAAATGACTTAAC 57.159 39.130 21.73 1.17 35.64 2.01
3956 4032 6.684686 AGTACGACTGCAGTAAATGACTTAA 58.315 36.000 21.73 0.00 35.64 1.85
3957 4033 6.263516 AGTACGACTGCAGTAAATGACTTA 57.736 37.500 21.73 1.02 35.64 2.24
3958 4034 5.135508 AGTACGACTGCAGTAAATGACTT 57.864 39.130 21.73 2.08 35.64 3.01
3959 4035 4.785511 AGTACGACTGCAGTAAATGACT 57.214 40.909 21.73 15.33 39.82 3.41
3960 4036 5.840940 AAAGTACGACTGCAGTAAATGAC 57.159 39.130 21.73 13.32 0.00 3.06
3961 4037 5.118050 CGAAAAGTACGACTGCAGTAAATGA 59.882 40.000 21.73 0.45 0.00 2.57
3962 4038 5.118050 TCGAAAAGTACGACTGCAGTAAATG 59.882 40.000 21.73 12.53 34.85 2.32
3963 4039 5.224888 TCGAAAAGTACGACTGCAGTAAAT 58.775 37.500 21.73 10.76 34.85 1.40
3964 4040 4.609947 TCGAAAAGTACGACTGCAGTAAA 58.390 39.130 21.73 5.15 34.85 2.01
3965 4041 4.227512 TCGAAAAGTACGACTGCAGTAA 57.772 40.909 21.73 5.56 34.85 2.24
3966 4042 3.902261 TCGAAAAGTACGACTGCAGTA 57.098 42.857 21.73 0.32 34.85 2.74
3967 4043 2.787601 TCGAAAAGTACGACTGCAGT 57.212 45.000 21.88 21.88 34.85 4.40
3968 4044 4.413087 AGTATCGAAAAGTACGACTGCAG 58.587 43.478 13.48 13.48 42.37 4.41
3969 4045 4.409570 GAGTATCGAAAAGTACGACTGCA 58.590 43.478 0.00 0.00 42.37 4.41
3970 4046 4.995365 GAGTATCGAAAAGTACGACTGC 57.005 45.455 0.00 0.00 42.37 4.40
3985 4061 2.127251 TGAATGCGATGCACGAGTATC 58.873 47.619 11.94 0.96 43.04 2.24
3986 4062 2.223537 TGAATGCGATGCACGAGTAT 57.776 45.000 11.94 0.00 43.04 2.12
3987 4063 2.223537 ATGAATGCGATGCACGAGTA 57.776 45.000 11.94 0.00 43.04 2.59
3988 4064 1.860950 GTATGAATGCGATGCACGAGT 59.139 47.619 11.94 0.00 43.04 4.18
3989 4065 1.860326 TGTATGAATGCGATGCACGAG 59.140 47.619 11.94 0.00 43.04 4.18
3990 4066 1.933247 TGTATGAATGCGATGCACGA 58.067 45.000 11.94 0.00 43.04 4.35
3991 4067 2.955607 ATGTATGAATGCGATGCACG 57.044 45.000 0.00 0.00 43.04 5.34
3992 4068 5.535043 TGATATGTATGAATGCGATGCAC 57.465 39.130 0.00 0.00 43.04 4.57
3993 4069 5.122711 CCTTGATATGTATGAATGCGATGCA 59.877 40.000 0.00 0.00 44.86 3.96
3994 4070 5.448225 CCCTTGATATGTATGAATGCGATGC 60.448 44.000 0.00 0.00 0.00 3.91
3995 4071 5.065602 CCCCTTGATATGTATGAATGCGATG 59.934 44.000 0.00 0.00 0.00 3.84
3996 4072 5.045651 TCCCCTTGATATGTATGAATGCGAT 60.046 40.000 0.00 0.00 0.00 4.58
3997 4073 4.285775 TCCCCTTGATATGTATGAATGCGA 59.714 41.667 0.00 0.00 0.00 5.10
3998 4074 4.578871 TCCCCTTGATATGTATGAATGCG 58.421 43.478 0.00 0.00 0.00 4.73
3999 4075 7.039504 ACAAATCCCCTTGATATGTATGAATGC 60.040 37.037 0.00 0.00 31.83 3.56
4000 4076 8.301720 CACAAATCCCCTTGATATGTATGAATG 58.698 37.037 0.00 0.00 31.83 2.67
4001 4077 7.452501 CCACAAATCCCCTTGATATGTATGAAT 59.547 37.037 0.00 0.00 31.83 2.57
4002 4078 6.777091 CCACAAATCCCCTTGATATGTATGAA 59.223 38.462 0.00 0.00 31.83 2.57
4003 4079 6.102468 TCCACAAATCCCCTTGATATGTATGA 59.898 38.462 0.00 0.00 31.83 2.15
4004 4080 6.306199 TCCACAAATCCCCTTGATATGTATG 58.694 40.000 0.00 0.00 31.83 2.39
4005 4081 6.529084 TCCACAAATCCCCTTGATATGTAT 57.471 37.500 0.00 0.00 31.83 2.29
4006 4082 5.985175 TCCACAAATCCCCTTGATATGTA 57.015 39.130 0.00 0.00 31.83 2.29
4007 4083 4.879295 TCCACAAATCCCCTTGATATGT 57.121 40.909 0.00 0.00 31.83 2.29
4008 4084 7.006509 ACTTATCCACAAATCCCCTTGATATG 58.993 38.462 0.00 0.00 31.83 1.78
4009 4085 7.166758 ACTTATCCACAAATCCCCTTGATAT 57.833 36.000 0.00 0.00 31.83 1.63
4010 4086 6.590656 ACTTATCCACAAATCCCCTTGATA 57.409 37.500 0.00 0.00 31.83 2.15
4011 4087 5.472301 ACTTATCCACAAATCCCCTTGAT 57.528 39.130 0.00 0.00 34.22 2.57
4012 4088 4.946160 ACTTATCCACAAATCCCCTTGA 57.054 40.909 0.00 0.00 0.00 3.02
4013 4089 8.630037 GTTTATACTTATCCACAAATCCCCTTG 58.370 37.037 0.00 0.00 0.00 3.61
4014 4090 8.566109 AGTTTATACTTATCCACAAATCCCCTT 58.434 33.333 0.00 0.00 0.00 3.95
4015 4091 7.998964 CAGTTTATACTTATCCACAAATCCCCT 59.001 37.037 0.00 0.00 30.26 4.79
4016 4092 7.255486 GCAGTTTATACTTATCCACAAATCCCC 60.255 40.741 0.00 0.00 30.26 4.81
4017 4093 7.255486 GGCAGTTTATACTTATCCACAAATCCC 60.255 40.741 0.00 0.00 30.26 3.85
4018 4094 7.255486 GGGCAGTTTATACTTATCCACAAATCC 60.255 40.741 0.00 0.00 30.26 3.01
4019 4095 7.284489 TGGGCAGTTTATACTTATCCACAAATC 59.716 37.037 0.00 0.00 30.26 2.17
4020 4096 7.068226 GTGGGCAGTTTATACTTATCCACAAAT 59.932 37.037 16.99 0.00 41.24 2.32
4021 4097 6.376018 GTGGGCAGTTTATACTTATCCACAAA 59.624 38.462 16.99 0.00 41.24 2.83
4022 4098 5.883673 GTGGGCAGTTTATACTTATCCACAA 59.116 40.000 16.99 0.00 41.24 3.33
4023 4099 5.433526 GTGGGCAGTTTATACTTATCCACA 58.566 41.667 16.99 0.44 41.24 4.17
4024 4100 4.820173 GGTGGGCAGTTTATACTTATCCAC 59.180 45.833 15.10 15.10 41.07 4.02
4025 4101 4.475381 TGGTGGGCAGTTTATACTTATCCA 59.525 41.667 0.00 0.00 30.26 3.41
4026 4102 5.043737 TGGTGGGCAGTTTATACTTATCC 57.956 43.478 0.00 0.00 30.26 2.59
4027 4103 6.602009 ACTTTGGTGGGCAGTTTATACTTATC 59.398 38.462 0.00 0.00 30.26 1.75
4028 4104 6.490492 ACTTTGGTGGGCAGTTTATACTTAT 58.510 36.000 0.00 0.00 30.26 1.73
4029 4105 5.883180 ACTTTGGTGGGCAGTTTATACTTA 58.117 37.500 0.00 0.00 30.26 2.24
4030 4106 4.736473 ACTTTGGTGGGCAGTTTATACTT 58.264 39.130 0.00 0.00 30.26 2.24
4031 4107 4.382386 ACTTTGGTGGGCAGTTTATACT 57.618 40.909 0.00 0.00 34.00 2.12
4032 4108 4.765339 AGAACTTTGGTGGGCAGTTTATAC 59.235 41.667 0.00 0.00 30.71 1.47
4033 4109 4.993028 AGAACTTTGGTGGGCAGTTTATA 58.007 39.130 0.00 0.00 30.71 0.98
4034 4110 3.844640 AGAACTTTGGTGGGCAGTTTAT 58.155 40.909 0.00 0.00 30.71 1.40
4035 4111 3.306472 AGAACTTTGGTGGGCAGTTTA 57.694 42.857 0.00 0.00 30.71 2.01
4036 4112 2.159179 AGAACTTTGGTGGGCAGTTT 57.841 45.000 0.00 0.00 30.71 2.66
4037 4113 2.159179 AAGAACTTTGGTGGGCAGTT 57.841 45.000 0.00 0.00 33.32 3.16
4038 4114 2.174854 ACTAAGAACTTTGGTGGGCAGT 59.825 45.455 0.00 0.00 0.00 4.40
4039 4115 2.863809 ACTAAGAACTTTGGTGGGCAG 58.136 47.619 0.00 0.00 0.00 4.85
4040 4116 3.136809 TGTACTAAGAACTTTGGTGGGCA 59.863 43.478 0.00 0.00 0.00 5.36
4041 4117 3.501062 GTGTACTAAGAACTTTGGTGGGC 59.499 47.826 0.00 0.00 0.00 5.36
4042 4118 4.070009 GGTGTACTAAGAACTTTGGTGGG 58.930 47.826 0.00 0.00 0.00 4.61
4043 4119 4.969484 AGGTGTACTAAGAACTTTGGTGG 58.031 43.478 0.00 0.00 0.00 4.61
4044 4120 7.159372 ACATAGGTGTACTAAGAACTTTGGTG 58.841 38.462 0.00 0.00 36.63 4.17
4045 4121 7.312415 ACATAGGTGTACTAAGAACTTTGGT 57.688 36.000 0.00 0.00 36.63 3.67
4046 4122 9.367444 CTAACATAGGTGTACTAAGAACTTTGG 57.633 37.037 0.00 0.00 37.67 3.28
4047 4123 9.924650 ACTAACATAGGTGTACTAAGAACTTTG 57.075 33.333 0.00 0.00 37.67 2.77
4051 4127 9.513727 GCTTACTAACATAGGTGTACTAAGAAC 57.486 37.037 0.00 0.00 37.67 3.01
4052 4128 9.471702 AGCTTACTAACATAGGTGTACTAAGAA 57.528 33.333 0.00 0.00 37.67 2.52
4053 4129 9.118300 GAGCTTACTAACATAGGTGTACTAAGA 57.882 37.037 0.00 0.00 37.67 2.10
4054 4130 8.068977 CGAGCTTACTAACATAGGTGTACTAAG 58.931 40.741 0.00 0.00 37.67 2.18
4055 4131 7.467811 GCGAGCTTACTAACATAGGTGTACTAA 60.468 40.741 0.00 0.00 37.67 2.24
4056 4132 6.017605 GCGAGCTTACTAACATAGGTGTACTA 60.018 42.308 0.00 0.00 37.67 1.82
4057 4133 5.221009 GCGAGCTTACTAACATAGGTGTACT 60.221 44.000 0.00 0.00 37.67 2.73
4058 4134 4.974888 GCGAGCTTACTAACATAGGTGTAC 59.025 45.833 0.00 0.00 37.67 2.90
4059 4135 4.037208 GGCGAGCTTACTAACATAGGTGTA 59.963 45.833 0.00 0.00 37.67 2.90
4060 4136 3.181478 GGCGAGCTTACTAACATAGGTGT 60.181 47.826 0.00 0.00 41.28 4.16
4061 4137 3.181479 TGGCGAGCTTACTAACATAGGTG 60.181 47.826 0.00 0.00 0.00 4.00
4062 4138 3.028850 TGGCGAGCTTACTAACATAGGT 58.971 45.455 0.00 0.00 0.00 3.08
4063 4139 3.553096 CCTGGCGAGCTTACTAACATAGG 60.553 52.174 0.00 0.00 0.00 2.57
4064 4140 3.318275 TCCTGGCGAGCTTACTAACATAG 59.682 47.826 0.00 0.00 0.00 2.23
4065 4141 3.293337 TCCTGGCGAGCTTACTAACATA 58.707 45.455 0.00 0.00 0.00 2.29
4066 4142 2.101582 CTCCTGGCGAGCTTACTAACAT 59.898 50.000 0.00 0.00 0.00 2.71
4067 4143 1.476891 CTCCTGGCGAGCTTACTAACA 59.523 52.381 0.00 0.00 0.00 2.41
4068 4144 2.211353 CTCCTGGCGAGCTTACTAAC 57.789 55.000 0.00 0.00 0.00 2.34
4077 4153 1.610363 TATACTCTGCTCCTGGCGAG 58.390 55.000 0.00 0.00 45.43 5.03
4078 4154 1.889170 CATATACTCTGCTCCTGGCGA 59.111 52.381 0.00 0.00 45.43 5.54
4079 4155 1.067283 CCATATACTCTGCTCCTGGCG 60.067 57.143 0.00 0.00 45.43 5.69
4080 4156 1.338579 GCCATATACTCTGCTCCTGGC 60.339 57.143 0.00 0.00 40.68 4.85
4081 4157 1.973515 TGCCATATACTCTGCTCCTGG 59.026 52.381 0.00 0.00 0.00 4.45
4082 4158 3.661944 CTTGCCATATACTCTGCTCCTG 58.338 50.000 0.00 0.00 0.00 3.86
4083 4159 2.038295 GCTTGCCATATACTCTGCTCCT 59.962 50.000 0.00 0.00 0.00 3.69
4084 4160 2.421619 GCTTGCCATATACTCTGCTCC 58.578 52.381 0.00 0.00 0.00 4.70
4085 4161 2.224378 TGGCTTGCCATATACTCTGCTC 60.224 50.000 10.65 0.00 0.00 4.26
4086 4162 1.770658 TGGCTTGCCATATACTCTGCT 59.229 47.619 10.65 0.00 0.00 4.24
4087 4163 2.260844 TGGCTTGCCATATACTCTGC 57.739 50.000 10.65 0.00 0.00 4.26
4088 4164 3.144506 CCTTGGCTTGCCATATACTCTG 58.855 50.000 15.58 0.00 0.00 3.35
4089 4165 3.048600 TCCTTGGCTTGCCATATACTCT 58.951 45.455 15.58 0.00 0.00 3.24
4090 4166 3.492102 TCCTTGGCTTGCCATATACTC 57.508 47.619 15.58 0.00 0.00 2.59
4091 4167 3.139025 ACATCCTTGGCTTGCCATATACT 59.861 43.478 15.58 0.00 0.00 2.12
4092 4168 3.490348 ACATCCTTGGCTTGCCATATAC 58.510 45.455 15.58 0.00 0.00 1.47
4093 4169 3.882102 ACATCCTTGGCTTGCCATATA 57.118 42.857 15.58 4.16 0.00 0.86
4094 4170 2.761786 ACATCCTTGGCTTGCCATAT 57.238 45.000 15.58 6.95 0.00 1.78
4095 4171 2.530460 AACATCCTTGGCTTGCCATA 57.470 45.000 15.58 4.87 0.00 2.74
4096 4172 1.648116 AAACATCCTTGGCTTGCCAT 58.352 45.000 15.58 0.00 0.00 4.40
4097 4173 1.344114 GAAAACATCCTTGGCTTGCCA 59.656 47.619 10.65 10.65 0.00 4.92
4098 4174 1.344114 TGAAAACATCCTTGGCTTGCC 59.656 47.619 4.43 4.43 0.00 4.52
4099 4175 2.297033 TCTGAAAACATCCTTGGCTTGC 59.703 45.455 0.00 0.00 0.00 4.01
4100 4176 4.491676 CATCTGAAAACATCCTTGGCTTG 58.508 43.478 0.00 0.00 0.00 4.01
4101 4177 3.056322 GCATCTGAAAACATCCTTGGCTT 60.056 43.478 0.00 0.00 0.00 4.35
4102 4178 2.494870 GCATCTGAAAACATCCTTGGCT 59.505 45.455 0.00 0.00 0.00 4.75
4103 4179 2.417787 GGCATCTGAAAACATCCTTGGC 60.418 50.000 0.00 0.00 0.00 4.52
4104 4180 2.827322 TGGCATCTGAAAACATCCTTGG 59.173 45.455 0.00 0.00 0.00 3.61
4105 4181 4.730949 ATGGCATCTGAAAACATCCTTG 57.269 40.909 0.00 0.00 0.00 3.61
4106 4182 4.773674 TCAATGGCATCTGAAAACATCCTT 59.226 37.500 0.00 0.00 0.00 3.36
4107 4183 4.159135 GTCAATGGCATCTGAAAACATCCT 59.841 41.667 0.00 0.00 0.00 3.24
4108 4184 4.427312 GTCAATGGCATCTGAAAACATCC 58.573 43.478 0.00 0.00 0.00 3.51
4109 4185 4.082081 TGGTCAATGGCATCTGAAAACATC 60.082 41.667 0.00 0.00 0.00 3.06
4110 4186 3.833650 TGGTCAATGGCATCTGAAAACAT 59.166 39.130 0.00 0.00 0.00 2.71
4111 4187 3.229293 TGGTCAATGGCATCTGAAAACA 58.771 40.909 0.00 5.02 0.00 2.83
4112 4188 3.940209 TGGTCAATGGCATCTGAAAAC 57.060 42.857 0.00 2.75 0.00 2.43
4113 4189 5.657745 ACATATGGTCAATGGCATCTGAAAA 59.342 36.000 7.80 0.11 0.00 2.29
4114 4190 5.202765 ACATATGGTCAATGGCATCTGAAA 58.797 37.500 7.80 0.44 0.00 2.69
4115 4191 4.795469 ACATATGGTCAATGGCATCTGAA 58.205 39.130 7.80 0.00 0.00 3.02
4116 4192 4.442401 ACATATGGTCAATGGCATCTGA 57.558 40.909 7.80 4.37 0.00 3.27
4117 4193 4.698780 CCTACATATGGTCAATGGCATCTG 59.301 45.833 7.80 1.83 0.00 2.90
4118 4194 4.808665 GCCTACATATGGTCAATGGCATCT 60.809 45.833 7.80 0.00 38.99 2.90
4119 4195 3.441572 GCCTACATATGGTCAATGGCATC 59.558 47.826 7.80 0.00 38.99 3.91
4120 4196 3.181430 TGCCTACATATGGTCAATGGCAT 60.181 43.478 7.80 0.00 43.29 4.40
4121 4197 2.174424 TGCCTACATATGGTCAATGGCA 59.826 45.455 7.80 13.06 45.51 4.92
4122 4198 2.862541 TGCCTACATATGGTCAATGGC 58.137 47.619 7.80 10.86 39.53 4.40
4123 4199 4.401022 ACATGCCTACATATGGTCAATGG 58.599 43.478 7.80 1.24 33.67 3.16
4124 4200 6.395426 AAACATGCCTACATATGGTCAATG 57.605 37.500 7.80 6.85 33.67 2.82
4125 4201 6.040842 GGAAAACATGCCTACATATGGTCAAT 59.959 38.462 7.80 0.00 33.67 2.57
4126 4202 5.359576 GGAAAACATGCCTACATATGGTCAA 59.640 40.000 7.80 0.00 33.67 3.18
4127 4203 4.887071 GGAAAACATGCCTACATATGGTCA 59.113 41.667 7.80 0.00 33.67 4.02
4128 4204 4.278419 GGGAAAACATGCCTACATATGGTC 59.722 45.833 7.80 0.00 36.40 4.02
4129 4205 4.215109 GGGAAAACATGCCTACATATGGT 58.785 43.478 7.80 0.00 36.40 3.55
4130 4206 3.573967 GGGGAAAACATGCCTACATATGG 59.426 47.826 7.80 0.00 40.01 2.74
4131 4207 4.473444 AGGGGAAAACATGCCTACATATG 58.527 43.478 0.00 0.00 40.01 1.78
4132 4208 4.814224 AGGGGAAAACATGCCTACATAT 57.186 40.909 0.00 0.00 40.01 1.78
4133 4209 4.601406 AAGGGGAAAACATGCCTACATA 57.399 40.909 0.00 0.00 40.01 2.29
4134 4210 3.473113 AAGGGGAAAACATGCCTACAT 57.527 42.857 0.00 0.00 40.01 2.29
4135 4211 2.990740 AAGGGGAAAACATGCCTACA 57.009 45.000 0.00 0.00 40.01 2.74
4136 4212 4.230745 TCTAAGGGGAAAACATGCCTAC 57.769 45.455 0.00 0.00 40.01 3.18
4137 4213 4.726825 AGATCTAAGGGGAAAACATGCCTA 59.273 41.667 0.00 0.00 40.01 3.93
4138 4214 3.529319 AGATCTAAGGGGAAAACATGCCT 59.471 43.478 0.00 0.00 40.01 4.75
4139 4215 3.903467 AGATCTAAGGGGAAAACATGCC 58.097 45.455 0.00 0.00 39.22 4.40
4140 4216 8.691661 TTATTAGATCTAAGGGGAAAACATGC 57.308 34.615 19.51 0.00 0.00 4.06
4155 4231 8.571336 CCTTGCGATTCCAAAATTATTAGATCT 58.429 33.333 0.00 0.00 0.00 2.75
4156 4232 8.352942 ACCTTGCGATTCCAAAATTATTAGATC 58.647 33.333 0.00 0.00 0.00 2.75
4157 4233 8.237811 ACCTTGCGATTCCAAAATTATTAGAT 57.762 30.769 0.00 0.00 0.00 1.98
4158 4234 7.639113 ACCTTGCGATTCCAAAATTATTAGA 57.361 32.000 0.00 0.00 0.00 2.10
4159 4235 8.594687 CAAACCTTGCGATTCCAAAATTATTAG 58.405 33.333 0.00 0.00 0.00 1.73
4160 4236 7.547370 CCAAACCTTGCGATTCCAAAATTATTA 59.453 33.333 0.00 0.00 0.00 0.98
4161 4237 6.371271 CCAAACCTTGCGATTCCAAAATTATT 59.629 34.615 0.00 0.00 0.00 1.40
4162 4238 5.874261 CCAAACCTTGCGATTCCAAAATTAT 59.126 36.000 0.00 0.00 0.00 1.28
4163 4239 5.011125 TCCAAACCTTGCGATTCCAAAATTA 59.989 36.000 0.00 0.00 0.00 1.40
4164 4240 4.064388 CCAAACCTTGCGATTCCAAAATT 58.936 39.130 0.00 0.00 0.00 1.82
4165 4241 3.323403 TCCAAACCTTGCGATTCCAAAAT 59.677 39.130 0.00 0.00 0.00 1.82
4166 4242 2.695666 TCCAAACCTTGCGATTCCAAAA 59.304 40.909 0.00 0.00 0.00 2.44
4167 4243 2.311463 TCCAAACCTTGCGATTCCAAA 58.689 42.857 0.00 0.00 0.00 3.28
4168 4244 1.988293 TCCAAACCTTGCGATTCCAA 58.012 45.000 0.00 0.00 0.00 3.53
4169 4245 1.818060 CATCCAAACCTTGCGATTCCA 59.182 47.619 0.00 0.00 0.00 3.53
4170 4246 1.818674 ACATCCAAACCTTGCGATTCC 59.181 47.619 0.00 0.00 0.00 3.01
4171 4247 2.487762 TCACATCCAAACCTTGCGATTC 59.512 45.455 0.00 0.00 0.00 2.52
4172 4248 2.513753 TCACATCCAAACCTTGCGATT 58.486 42.857 0.00 0.00 0.00 3.34
4173 4249 2.198827 TCACATCCAAACCTTGCGAT 57.801 45.000 0.00 0.00 0.00 4.58
4174 4250 2.198827 ATCACATCCAAACCTTGCGA 57.801 45.000 0.00 0.00 0.00 5.10
4175 4251 2.489329 AGAATCACATCCAAACCTTGCG 59.511 45.455 0.00 0.00 0.00 4.85
4176 4252 3.367703 CCAGAATCACATCCAAACCTTGC 60.368 47.826 0.00 0.00 0.00 4.01
4177 4253 3.194116 CCCAGAATCACATCCAAACCTTG 59.806 47.826 0.00 0.00 0.00 3.61
4178 4254 3.181418 ACCCAGAATCACATCCAAACCTT 60.181 43.478 0.00 0.00 0.00 3.50
4179 4255 2.379907 ACCCAGAATCACATCCAAACCT 59.620 45.455 0.00 0.00 0.00 3.50
4180 4256 2.493278 CACCCAGAATCACATCCAAACC 59.507 50.000 0.00 0.00 0.00 3.27
4181 4257 3.057315 CACACCCAGAATCACATCCAAAC 60.057 47.826 0.00 0.00 0.00 2.93
4182 4258 3.156293 CACACCCAGAATCACATCCAAA 58.844 45.455 0.00 0.00 0.00 3.28
4183 4259 2.555006 CCACACCCAGAATCACATCCAA 60.555 50.000 0.00 0.00 0.00 3.53
4184 4260 1.004628 CCACACCCAGAATCACATCCA 59.995 52.381 0.00 0.00 0.00 3.41
4185 4261 1.755179 CCACACCCAGAATCACATCC 58.245 55.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.