Multiple sequence alignment - TraesCS3D01G102400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G102400 chr3D 100.000 6409 0 0 1 6409 55085950 55079542 0.000000e+00 11836.0
1 TraesCS3D01G102400 chr3D 98.943 1703 14 2 2968 4670 581078158 581079856 0.000000e+00 3042.0
2 TraesCS3D01G102400 chr3D 98.002 1702 28 4 2971 4670 568853393 568855090 0.000000e+00 2950.0
3 TraesCS3D01G102400 chr3D 90.205 2195 125 38 314 2460 55741521 55743673 0.000000e+00 2780.0
4 TraesCS3D01G102400 chr3D 92.760 884 46 8 4670 5550 55744109 55744977 0.000000e+00 1262.0
5 TraesCS3D01G102400 chr3D 84.196 1120 144 18 1023 2136 148700234 148699142 0.000000e+00 1057.0
6 TraesCS3D01G102400 chr3D 83.289 1125 156 17 1026 2140 148336768 148335666 0.000000e+00 1007.0
7 TraesCS3D01G102400 chr3D 94.966 437 15 1 2527 2963 55743691 55744120 0.000000e+00 678.0
8 TraesCS3D01G102400 chr3D 90.572 297 13 8 5544 5826 55745078 55745373 4.690000e-101 379.0
9 TraesCS3D01G102400 chr3D 91.339 127 9 2 6104 6230 55745714 55745838 8.540000e-39 172.0
10 TraesCS3D01G102400 chr3D 92.035 113 9 0 201 313 60233921 60234033 6.650000e-35 159.0
11 TraesCS3D01G102400 chr3D 91.667 48 4 0 6183 6230 55673112 55673159 4.150000e-07 67.6
12 TraesCS3D01G102400 chr7D 99.118 1700 15 0 2971 4670 288474938 288473239 0.000000e+00 3057.0
13 TraesCS3D01G102400 chr7D 91.509 106 9 0 201 306 573455853 573455958 5.180000e-31 147.0
14 TraesCS3D01G102400 chr7D 94.231 52 2 1 2913 2963 183566442 183566493 1.920000e-10 78.7
15 TraesCS3D01G102400 chr7D 95.833 48 2 0 2916 2963 563085895 563085848 1.920000e-10 78.7
16 TraesCS3D01G102400 chr7D 95.833 48 2 0 2916 2963 600558538 600558585 1.920000e-10 78.7
17 TraesCS3D01G102400 chr5D 99.000 1700 14 3 2971 4670 478739233 478737537 0.000000e+00 3042.0
18 TraesCS3D01G102400 chr5D 87.375 301 26 5 2166 2466 526734831 526735119 1.030000e-87 335.0
19 TraesCS3D01G102400 chr5D 92.793 111 8 0 201 311 513665347 513665237 1.850000e-35 161.0
20 TraesCS3D01G102400 chr5D 95.775 71 3 0 201 271 359203095 359203025 1.460000e-21 115.0
21 TraesCS3D01G102400 chr1D 98.529 1700 23 2 2971 4670 409587641 409585944 0.000000e+00 3000.0
22 TraesCS3D01G102400 chr1D 97.881 1699 30 4 2972 4670 256682785 256684477 0.000000e+00 2933.0
23 TraesCS3D01G102400 chr1D 97.651 1703 37 2 2971 4670 33587776 33586074 0.000000e+00 2920.0
24 TraesCS3D01G102400 chr6D 98.235 1700 30 0 2971 4670 462872306 462874005 0.000000e+00 2974.0
25 TraesCS3D01G102400 chr6D 98.118 1700 31 1 2971 4670 4957407 4955709 0.000000e+00 2961.0
26 TraesCS3D01G102400 chr6D 91.964 112 9 0 201 312 41639009 41639120 2.390000e-34 158.0
27 TraesCS3D01G102400 chr3B 92.020 1817 90 16 618 2394 85108552 85106751 0.000000e+00 2501.0
28 TraesCS3D01G102400 chr3B 88.516 1193 116 16 942 2122 85224606 85223423 0.000000e+00 1424.0
29 TraesCS3D01G102400 chr3B 86.088 1337 97 43 4677 5951 85105221 85103912 0.000000e+00 1356.0
30 TraesCS3D01G102400 chr3B 84.794 1118 138 12 1023 2133 207738781 207739873 0.000000e+00 1094.0
31 TraesCS3D01G102400 chr3B 83.943 1121 145 17 1020 2133 207733668 207734760 0.000000e+00 1040.0
32 TraesCS3D01G102400 chr3B 83.727 762 59 34 1948 2661 340616468 340615724 0.000000e+00 660.0
33 TraesCS3D01G102400 chr3B 81.356 767 79 39 2165 2887 85106143 85105397 3.350000e-157 566.0
34 TraesCS3D01G102400 chr3B 81.209 761 79 30 1948 2661 790136684 790135941 7.260000e-154 555.0
35 TraesCS3D01G102400 chr3B 85.634 536 47 12 1948 2466 744739898 744739376 2.630000e-148 536.0
36 TraesCS3D01G102400 chr3B 86.301 511 32 18 2410 2900 85106642 85106150 7.360000e-144 521.0
37 TraesCS3D01G102400 chr3B 84.942 259 20 12 369 619 85119188 85118941 1.780000e-60 244.0
38 TraesCS3D01G102400 chr3B 81.818 253 37 3 974 1226 86134394 86134637 3.030000e-48 204.0
39 TraesCS3D01G102400 chr3B 98.039 51 1 0 6186 6236 85221514 85221464 8.850000e-14 89.8
40 TraesCS3D01G102400 chr3A 88.744 1919 131 45 876 2733 65480887 65478993 0.000000e+00 2268.0
41 TraesCS3D01G102400 chr3A 84.272 1119 145 15 1020 2133 164610963 164612055 0.000000e+00 1062.0
42 TraesCS3D01G102400 chr3A 84.263 1112 141 16 1031 2134 164614444 164615529 0.000000e+00 1053.0
43 TraesCS3D01G102400 chr3A 89.737 419 29 5 2503 2919 532010243 532010649 2.050000e-144 523.0
44 TraesCS3D01G102400 chr3A 86.932 352 23 7 5131 5471 65478446 65478107 2.180000e-99 374.0
45 TraesCS3D01G102400 chr3A 80.044 456 41 19 403 843 65481311 65480891 6.280000e-75 292.0
46 TraesCS3D01G102400 chr3A 80.870 345 43 16 5551 5878 65478110 65477772 3.840000e-62 250.0
47 TraesCS3D01G102400 chr3A 82.222 90 7 3 646 726 65778301 65778390 1.150000e-07 69.4
48 TraesCS3D01G102400 chr2B 82.763 760 68 30 1949 2661 617121893 617121150 2.540000e-173 619.0
49 TraesCS3D01G102400 chr2B 82.283 762 73 35 1949 2661 621977274 621976526 2.560000e-168 603.0
50 TraesCS3D01G102400 chr2B 85.634 536 47 12 1948 2466 316181496 316180974 2.630000e-148 536.0
51 TraesCS3D01G102400 chr2B 89.976 419 29 4 2503 2919 177030826 177031233 4.400000e-146 529.0
52 TraesCS3D01G102400 chr7A 90.692 419 26 4 2503 2919 151360363 151360770 4.370000e-151 545.0
53 TraesCS3D01G102400 chr7A 90.385 416 27 4 2506 2919 578330960 578330556 9.460000e-148 534.0
54 TraesCS3D01G102400 chr5A 90.453 419 26 5 2503 2919 13518264 13518670 2.030000e-149 540.0
55 TraesCS3D01G102400 chr2A 89.737 419 30 5 2503 2919 664866142 664866549 2.050000e-144 523.0
56 TraesCS3D01G102400 chr2A 94.643 112 6 0 201 312 14488303 14488192 2.380000e-39 174.0
57 TraesCS3D01G102400 chr2A 91.964 112 9 0 201 312 38973910 38974021 2.390000e-34 158.0
58 TraesCS3D01G102400 chr4A 89.423 416 31 4 2506 2919 651118753 651118349 4.430000e-141 512.0
59 TraesCS3D01G102400 chr4A 89.234 418 30 6 2506 2919 646008829 646008423 5.730000e-140 508.0
60 TraesCS3D01G102400 chr4A 85.421 439 43 8 1983 2402 710637257 710636821 2.740000e-118 436.0
61 TraesCS3D01G102400 chr4A 93.750 112 7 0 201 312 113752512 113752623 1.110000e-37 169.0
62 TraesCS3D01G102400 chr7B 88.417 259 19 3 2144 2402 57242692 57242445 1.040000e-77 302.0
63 TraesCS3D01G102400 chr1B 87.645 259 21 3 2144 2402 554769591 554769838 2.260000e-74 291.0
64 TraesCS3D01G102400 chr1B 89.796 98 10 0 968 1065 98461751 98461654 6.750000e-25 126.0
65 TraesCS3D01G102400 chr2D 92.857 112 8 0 201 312 647505529 647505640 5.140000e-36 163.0
66 TraesCS3D01G102400 chr6B 95.833 48 2 0 2916 2963 273027703 273027656 1.920000e-10 78.7
67 TraesCS3D01G102400 chr6B 95.833 48 2 0 2916 2963 296975721 296975674 1.920000e-10 78.7
68 TraesCS3D01G102400 chr6A 95.833 48 2 0 2916 2963 148692189 148692236 1.920000e-10 78.7
69 TraesCS3D01G102400 chr5B 95.833 48 2 0 2916 2963 121408427 121408474 1.920000e-10 78.7
70 TraesCS3D01G102400 chr1A 95.833 48 2 0 2916 2963 552051188 552051141 1.920000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G102400 chr3D 55079542 55085950 6408 True 11836.0 11836 100.00000 1 6409 1 chr3D.!!$R1 6408
1 TraesCS3D01G102400 chr3D 581078158 581079856 1698 False 3042.0 3042 98.94300 2968 4670 1 chr3D.!!$F4 1702
2 TraesCS3D01G102400 chr3D 568853393 568855090 1697 False 2950.0 2950 98.00200 2971 4670 1 chr3D.!!$F3 1699
3 TraesCS3D01G102400 chr3D 148699142 148700234 1092 True 1057.0 1057 84.19600 1023 2136 1 chr3D.!!$R3 1113
4 TraesCS3D01G102400 chr3D 55741521 55745838 4317 False 1054.2 2780 91.96840 314 6230 5 chr3D.!!$F5 5916
5 TraesCS3D01G102400 chr3D 148335666 148336768 1102 True 1007.0 1007 83.28900 1026 2140 1 chr3D.!!$R2 1114
6 TraesCS3D01G102400 chr7D 288473239 288474938 1699 True 3057.0 3057 99.11800 2971 4670 1 chr7D.!!$R1 1699
7 TraesCS3D01G102400 chr5D 478737537 478739233 1696 True 3042.0 3042 99.00000 2971 4670 1 chr5D.!!$R2 1699
8 TraesCS3D01G102400 chr1D 409585944 409587641 1697 True 3000.0 3000 98.52900 2971 4670 1 chr1D.!!$R2 1699
9 TraesCS3D01G102400 chr1D 256682785 256684477 1692 False 2933.0 2933 97.88100 2972 4670 1 chr1D.!!$F1 1698
10 TraesCS3D01G102400 chr1D 33586074 33587776 1702 True 2920.0 2920 97.65100 2971 4670 1 chr1D.!!$R1 1699
11 TraesCS3D01G102400 chr6D 462872306 462874005 1699 False 2974.0 2974 98.23500 2971 4670 1 chr6D.!!$F2 1699
12 TraesCS3D01G102400 chr6D 4955709 4957407 1698 True 2961.0 2961 98.11800 2971 4670 1 chr6D.!!$R1 1699
13 TraesCS3D01G102400 chr3B 85103912 85108552 4640 True 1236.0 2501 86.44125 618 5951 4 chr3B.!!$R5 5333
14 TraesCS3D01G102400 chr3B 207738781 207739873 1092 False 1094.0 1094 84.79400 1023 2133 1 chr3B.!!$F3 1110
15 TraesCS3D01G102400 chr3B 207733668 207734760 1092 False 1040.0 1040 83.94300 1020 2133 1 chr3B.!!$F2 1113
16 TraesCS3D01G102400 chr3B 85221464 85224606 3142 True 756.9 1424 93.27750 942 6236 2 chr3B.!!$R6 5294
17 TraesCS3D01G102400 chr3B 340615724 340616468 744 True 660.0 660 83.72700 1948 2661 1 chr3B.!!$R2 713
18 TraesCS3D01G102400 chr3B 790135941 790136684 743 True 555.0 555 81.20900 1948 2661 1 chr3B.!!$R4 713
19 TraesCS3D01G102400 chr3B 744739376 744739898 522 True 536.0 536 85.63400 1948 2466 1 chr3B.!!$R3 518
20 TraesCS3D01G102400 chr3A 164610963 164615529 4566 False 1057.5 1062 84.26750 1020 2134 2 chr3A.!!$F3 1114
21 TraesCS3D01G102400 chr3A 65477772 65481311 3539 True 796.0 2268 84.14750 403 5878 4 chr3A.!!$R1 5475
22 TraesCS3D01G102400 chr2B 617121150 617121893 743 True 619.0 619 82.76300 1949 2661 1 chr2B.!!$R2 712
23 TraesCS3D01G102400 chr2B 621976526 621977274 748 True 603.0 603 82.28300 1949 2661 1 chr2B.!!$R3 712
24 TraesCS3D01G102400 chr2B 316180974 316181496 522 True 536.0 536 85.63400 1948 2466 1 chr2B.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
303 304 0.034863 GTAAACCGGCAAGGGATCCA 60.035 55.000 15.23 0.0 46.96 3.41 F
305 306 0.178947 AAACCGGCAAGGGATCCAAA 60.179 50.000 15.23 0.0 46.96 3.28 F
312 313 0.251742 CAAGGGATCCAAAGGCACCA 60.252 55.000 15.23 0.0 0.00 4.17 F
631 654 0.481128 ACCGGAACCCCAAAAGATGT 59.519 50.000 9.46 0.0 0.00 3.06 F
772 805 0.680921 GCCAAAGGCTGCCATGTCTA 60.681 55.000 22.65 0.0 46.69 2.59 F
2211 2348 0.758310 TGTGGCATTGTGAAAGGGCA 60.758 50.000 0.00 0.0 0.00 5.36 F
3534 4660 1.202627 GCCACAAAATCCTTGCCAACA 60.203 47.619 0.00 0.0 0.00 3.33 F
4102 5228 1.554617 CCCCTTCCAAAATGGCGAATT 59.445 47.619 0.00 0.0 37.47 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 1805 2.434134 CGCAGCGGTACTTGTCGAC 61.434 63.158 9.11 9.11 0.00 4.20 R
2211 2348 3.859443 TGCAGCAACAACTGAAATGTTT 58.141 36.364 0.00 0.00 38.90 2.83 R
2267 2408 4.307032 ACCTGGAGCATCAATAAACAGT 57.693 40.909 0.00 0.00 36.25 3.55 R
2268 2409 5.295292 CACTACCTGGAGCATCAATAAACAG 59.705 44.000 0.00 0.00 36.25 3.16 R
2731 3030 5.810587 GTTAGTAAGCACTAAGCACATAGCA 59.189 40.000 0.00 0.00 45.66 3.49 R
4102 5228 3.646162 ACAGGTGACAATGAGACCAACTA 59.354 43.478 7.86 0.00 31.61 2.24 R
4786 5948 0.168128 GCAAACACTGGCGTATGGAC 59.832 55.000 0.00 0.00 0.00 4.02 R
6067 8448 0.247736 CTGCTTCTAGCCTTCACGGT 59.752 55.000 0.00 0.00 41.51 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.029964 TCCAACACCTTCCGTCGC 59.970 61.111 0.00 0.00 0.00 5.19
18 19 3.047877 CCAACACCTTCCGTCGCC 61.048 66.667 0.00 0.00 0.00 5.54
19 20 2.030562 CAACACCTTCCGTCGCCT 59.969 61.111 0.00 0.00 0.00 5.52
20 21 2.030562 AACACCTTCCGTCGCCTG 59.969 61.111 0.00 0.00 0.00 4.85
21 22 3.530910 AACACCTTCCGTCGCCTGG 62.531 63.158 0.00 0.00 0.00 4.45
49 50 2.931969 CGTCACCGTAAAACCCTATTCC 59.068 50.000 0.00 0.00 0.00 3.01
50 51 2.931969 GTCACCGTAAAACCCTATTCCG 59.068 50.000 0.00 0.00 0.00 4.30
51 52 2.093553 TCACCGTAAAACCCTATTCCGG 60.094 50.000 0.00 0.00 39.75 5.14
52 53 1.908619 ACCGTAAAACCCTATTCCGGT 59.091 47.619 0.00 0.00 41.93 5.28
53 54 2.093500 ACCGTAAAACCCTATTCCGGTC 60.093 50.000 0.00 0.00 43.08 4.79
54 55 2.195922 CGTAAAACCCTATTCCGGTCG 58.804 52.381 0.00 0.00 31.48 4.79
55 56 1.935873 GTAAAACCCTATTCCGGTCGC 59.064 52.381 0.00 0.00 31.48 5.19
56 57 0.393402 AAAACCCTATTCCGGTCGCC 60.393 55.000 0.00 0.00 31.48 5.54
57 58 1.269703 AAACCCTATTCCGGTCGCCT 61.270 55.000 0.00 0.00 31.48 5.52
58 59 0.397535 AACCCTATTCCGGTCGCCTA 60.398 55.000 0.00 0.00 31.48 3.93
59 60 1.111715 ACCCTATTCCGGTCGCCTAC 61.112 60.000 0.00 0.00 0.00 3.18
60 61 1.664306 CCTATTCCGGTCGCCTACC 59.336 63.158 0.00 0.00 45.77 3.18
85 86 4.660938 GCCACCCCACCACTCCAC 62.661 72.222 0.00 0.00 0.00 4.02
86 87 3.174987 CCACCCCACCACTCCACA 61.175 66.667 0.00 0.00 0.00 4.17
87 88 2.113139 CACCCCACCACTCCACAC 59.887 66.667 0.00 0.00 0.00 3.82
88 89 3.175710 ACCCCACCACTCCACACC 61.176 66.667 0.00 0.00 0.00 4.16
89 90 2.854032 CCCCACCACTCCACACCT 60.854 66.667 0.00 0.00 0.00 4.00
90 91 2.750350 CCCACCACTCCACACCTC 59.250 66.667 0.00 0.00 0.00 3.85
91 92 2.146724 CCCACCACTCCACACCTCA 61.147 63.158 0.00 0.00 0.00 3.86
92 93 1.071471 CCACCACTCCACACCTCAC 59.929 63.158 0.00 0.00 0.00 3.51
93 94 1.071471 CACCACTCCACACCTCACC 59.929 63.158 0.00 0.00 0.00 4.02
94 95 1.383943 ACCACTCCACACCTCACCA 60.384 57.895 0.00 0.00 0.00 4.17
95 96 1.071471 CCACTCCACACCTCACCAC 59.929 63.158 0.00 0.00 0.00 4.16
96 97 1.071471 CACTCCACACCTCACCACC 59.929 63.158 0.00 0.00 0.00 4.61
97 98 1.383943 ACTCCACACCTCACCACCA 60.384 57.895 0.00 0.00 0.00 4.17
98 99 0.986019 ACTCCACACCTCACCACCAA 60.986 55.000 0.00 0.00 0.00 3.67
99 100 0.535102 CTCCACACCTCACCACCAAC 60.535 60.000 0.00 0.00 0.00 3.77
100 101 1.891919 CCACACCTCACCACCAACG 60.892 63.158 0.00 0.00 0.00 4.10
101 102 1.153249 CACACCTCACCACCAACGT 60.153 57.895 0.00 0.00 0.00 3.99
102 103 1.145377 ACACCTCACCACCAACGTC 59.855 57.895 0.00 0.00 0.00 4.34
103 104 1.954146 CACCTCACCACCAACGTCG 60.954 63.158 0.00 0.00 0.00 5.12
104 105 3.041940 CCTCACCACCAACGTCGC 61.042 66.667 0.00 0.00 0.00 5.19
105 106 3.041940 CTCACCACCAACGTCGCC 61.042 66.667 0.00 0.00 0.00 5.54
106 107 4.953868 TCACCACCAACGTCGCCG 62.954 66.667 0.00 0.00 40.83 6.46
142 143 4.451150 CGCACCGAGCCAGCCTAA 62.451 66.667 0.00 0.00 41.38 2.69
143 144 2.820037 GCACCGAGCCAGCCTAAC 60.820 66.667 0.00 0.00 37.23 2.34
144 145 2.982130 CACCGAGCCAGCCTAACT 59.018 61.111 0.00 0.00 0.00 2.24
145 146 1.296715 CACCGAGCCAGCCTAACTT 59.703 57.895 0.00 0.00 0.00 2.66
146 147 0.535335 CACCGAGCCAGCCTAACTTA 59.465 55.000 0.00 0.00 0.00 2.24
147 148 0.824759 ACCGAGCCAGCCTAACTTAG 59.175 55.000 0.00 0.00 0.00 2.18
148 149 0.530870 CCGAGCCAGCCTAACTTAGC 60.531 60.000 0.00 0.00 0.00 3.09
149 150 0.530870 CGAGCCAGCCTAACTTAGCC 60.531 60.000 0.00 0.00 0.00 3.93
150 151 0.179043 GAGCCAGCCTAACTTAGCCC 60.179 60.000 0.00 0.00 0.00 5.19
151 152 0.914417 AGCCAGCCTAACTTAGCCCA 60.914 55.000 0.00 0.00 0.00 5.36
152 153 0.183731 GCCAGCCTAACTTAGCCCAT 59.816 55.000 0.00 0.00 0.00 4.00
153 154 1.420138 GCCAGCCTAACTTAGCCCATA 59.580 52.381 0.00 0.00 0.00 2.74
154 155 2.040412 GCCAGCCTAACTTAGCCCATAT 59.960 50.000 0.00 0.00 0.00 1.78
155 156 3.679389 CCAGCCTAACTTAGCCCATATG 58.321 50.000 0.00 0.00 0.00 1.78
156 157 3.560025 CCAGCCTAACTTAGCCCATATGG 60.560 52.174 15.41 15.41 37.09 2.74
166 167 2.281761 CCATATGGGGTCGGCTGC 60.282 66.667 14.52 0.00 0.00 5.25
167 168 2.510411 CATATGGGGTCGGCTGCA 59.490 61.111 0.50 0.00 0.00 4.41
168 169 1.598962 CATATGGGGTCGGCTGCAG 60.599 63.158 10.11 10.11 0.00 4.41
169 170 3.482232 ATATGGGGTCGGCTGCAGC 62.482 63.158 30.88 30.88 41.14 5.25
197 198 4.838152 CCGGCGTGGGTCATCCTG 62.838 72.222 6.01 0.00 36.20 3.86
198 199 4.838152 CGGCGTGGGTCATCCTGG 62.838 72.222 0.00 0.00 36.20 4.45
199 200 4.489771 GGCGTGGGTCATCCTGGG 62.490 72.222 0.00 0.00 36.20 4.45
201 202 3.716195 CGTGGGTCATCCTGGGCA 61.716 66.667 0.00 0.00 36.20 5.36
202 203 2.273449 GTGGGTCATCCTGGGCAG 59.727 66.667 0.00 0.00 36.20 4.85
203 204 3.731728 TGGGTCATCCTGGGCAGC 61.732 66.667 0.00 0.00 36.20 5.25
204 205 4.864334 GGGTCATCCTGGGCAGCG 62.864 72.222 0.00 0.00 0.00 5.18
205 206 4.864334 GGTCATCCTGGGCAGCGG 62.864 72.222 0.00 0.00 0.00 5.52
206 207 4.101448 GTCATCCTGGGCAGCGGT 62.101 66.667 0.00 0.00 0.00 5.68
207 208 3.329889 TCATCCTGGGCAGCGGTT 61.330 61.111 0.00 0.00 0.00 4.44
208 209 3.136123 CATCCTGGGCAGCGGTTG 61.136 66.667 0.00 0.00 0.00 3.77
217 218 2.730094 CAGCGGTTGCCAGCTTTT 59.270 55.556 0.00 0.00 42.52 2.27
218 219 1.067916 CAGCGGTTGCCAGCTTTTT 59.932 52.632 0.00 0.00 42.52 1.94
219 220 1.067916 AGCGGTTGCCAGCTTTTTG 59.932 52.632 0.00 0.00 41.52 2.44
220 221 1.227234 GCGGTTGCCAGCTTTTTGT 60.227 52.632 0.00 0.00 33.98 2.83
221 222 0.809636 GCGGTTGCCAGCTTTTTGTT 60.810 50.000 0.00 0.00 33.98 2.83
222 223 1.208259 CGGTTGCCAGCTTTTTGTTC 58.792 50.000 0.00 0.00 0.00 3.18
223 224 1.202405 CGGTTGCCAGCTTTTTGTTCT 60.202 47.619 0.00 0.00 0.00 3.01
224 225 2.034053 CGGTTGCCAGCTTTTTGTTCTA 59.966 45.455 0.00 0.00 0.00 2.10
225 226 3.305335 CGGTTGCCAGCTTTTTGTTCTAT 60.305 43.478 0.00 0.00 0.00 1.98
226 227 4.237724 GGTTGCCAGCTTTTTGTTCTATC 58.762 43.478 0.00 0.00 0.00 2.08
227 228 3.829886 TGCCAGCTTTTTGTTCTATCG 57.170 42.857 0.00 0.00 0.00 2.92
228 229 3.407698 TGCCAGCTTTTTGTTCTATCGA 58.592 40.909 0.00 0.00 0.00 3.59
229 230 3.436704 TGCCAGCTTTTTGTTCTATCGAG 59.563 43.478 0.00 0.00 0.00 4.04
230 231 3.729163 GCCAGCTTTTTGTTCTATCGAGC 60.729 47.826 0.00 0.00 0.00 5.03
231 232 3.484229 CCAGCTTTTTGTTCTATCGAGCG 60.484 47.826 0.00 0.00 34.09 5.03
232 233 3.367932 CAGCTTTTTGTTCTATCGAGCGA 59.632 43.478 0.00 0.00 34.09 4.93
233 234 3.614616 AGCTTTTTGTTCTATCGAGCGAG 59.385 43.478 0.00 0.00 34.09 5.03
234 235 3.782574 GCTTTTTGTTCTATCGAGCGAGC 60.783 47.826 0.00 0.00 0.00 5.03
235 236 1.545759 TTTGTTCTATCGAGCGAGCG 58.454 50.000 0.00 0.00 0.00 5.03
236 237 0.730840 TTGTTCTATCGAGCGAGCGA 59.269 50.000 2.60 2.60 45.22 4.93
237 238 0.305009 TGTTCTATCGAGCGAGCGAG 59.695 55.000 6.24 0.00 44.26 5.03
238 239 0.994737 GTTCTATCGAGCGAGCGAGC 60.995 60.000 6.24 0.00 44.26 5.03
239 240 2.119147 TTCTATCGAGCGAGCGAGCC 62.119 60.000 6.24 0.00 44.26 4.70
240 241 2.897922 CTATCGAGCGAGCGAGCCA 61.898 63.158 6.24 0.00 44.26 4.75
241 242 2.393989 CTATCGAGCGAGCGAGCCAA 62.394 60.000 6.24 0.00 44.26 4.52
242 243 2.000215 TATCGAGCGAGCGAGCCAAA 62.000 55.000 6.24 0.00 44.26 3.28
243 244 2.635229 ATCGAGCGAGCGAGCCAAAT 62.635 55.000 6.24 0.00 44.26 2.32
244 245 2.864931 CGAGCGAGCGAGCCAAATC 61.865 63.158 2.87 0.00 38.01 2.17
245 246 2.864931 GAGCGAGCGAGCCAAATCG 61.865 63.158 2.87 0.97 45.48 3.34
246 247 3.929948 GCGAGCGAGCCAAATCGG 61.930 66.667 6.59 0.00 42.94 4.18
255 256 4.464262 CCAAATCGGCTAGCCTCC 57.536 61.111 30.55 5.76 0.00 4.30
257 258 1.144057 CAAATCGGCTAGCCTCCGT 59.856 57.895 30.55 11.35 46.49 4.69
258 259 0.876342 CAAATCGGCTAGCCTCCGTC 60.876 60.000 30.55 4.19 46.49 4.79
259 260 2.351336 AAATCGGCTAGCCTCCGTCG 62.351 60.000 30.55 16.52 46.49 5.12
268 269 3.458163 CCTCCGTCGGCAAGGCTA 61.458 66.667 6.34 0.00 0.00 3.93
269 270 2.105128 CTCCGTCGGCAAGGCTAG 59.895 66.667 6.34 0.00 0.00 3.42
270 271 4.143333 TCCGTCGGCAAGGCTAGC 62.143 66.667 6.04 6.04 0.00 3.42
271 272 4.148825 CCGTCGGCAAGGCTAGCT 62.149 66.667 15.72 0.00 0.00 3.32
272 273 2.125512 CGTCGGCAAGGCTAGCTT 60.126 61.111 15.72 3.40 0.00 3.74
273 274 1.741770 CGTCGGCAAGGCTAGCTTT 60.742 57.895 15.72 11.02 0.00 3.51
274 275 1.796796 GTCGGCAAGGCTAGCTTTG 59.203 57.895 29.63 29.63 36.31 2.77
275 276 1.377202 TCGGCAAGGCTAGCTTTGG 60.377 57.895 32.85 21.01 34.22 3.28
287 288 3.453559 GCTTTGGCTAGCGAGGTAA 57.546 52.632 9.00 0.00 35.22 2.85
288 289 1.734163 GCTTTGGCTAGCGAGGTAAA 58.266 50.000 9.00 4.40 35.22 2.01
289 290 1.397343 GCTTTGGCTAGCGAGGTAAAC 59.603 52.381 9.00 0.00 35.22 2.01
290 291 2.007608 CTTTGGCTAGCGAGGTAAACC 58.992 52.381 9.00 0.00 0.00 3.27
291 292 0.108520 TTGGCTAGCGAGGTAAACCG 60.109 55.000 9.00 0.00 42.08 4.44
292 293 1.227176 GGCTAGCGAGGTAAACCGG 60.227 63.158 9.00 0.00 42.08 5.28
293 294 1.881709 GCTAGCGAGGTAAACCGGC 60.882 63.158 0.00 9.39 42.08 6.13
294 295 1.514087 CTAGCGAGGTAAACCGGCA 59.486 57.895 16.87 5.92 40.97 5.69
295 296 0.108520 CTAGCGAGGTAAACCGGCAA 60.109 55.000 16.87 0.00 40.97 4.52
296 297 0.108520 TAGCGAGGTAAACCGGCAAG 60.109 55.000 16.87 1.13 40.97 4.01
298 299 1.743995 CGAGGTAAACCGGCAAGGG 60.744 63.158 0.00 0.00 46.96 3.95
299 300 1.681076 GAGGTAAACCGGCAAGGGA 59.319 57.895 0.00 0.00 46.96 4.20
300 301 0.255033 GAGGTAAACCGGCAAGGGAT 59.745 55.000 0.00 0.00 46.96 3.85
301 302 0.255033 AGGTAAACCGGCAAGGGATC 59.745 55.000 0.00 0.00 46.96 3.36
302 303 0.750546 GGTAAACCGGCAAGGGATCC 60.751 60.000 1.92 1.92 46.96 3.36
303 304 0.034863 GTAAACCGGCAAGGGATCCA 60.035 55.000 15.23 0.00 46.96 3.41
304 305 0.699399 TAAACCGGCAAGGGATCCAA 59.301 50.000 15.23 0.00 46.96 3.53
305 306 0.178947 AAACCGGCAAGGGATCCAAA 60.179 50.000 15.23 0.00 46.96 3.28
306 307 0.611896 AACCGGCAAGGGATCCAAAG 60.612 55.000 15.23 2.99 46.96 2.77
307 308 1.754234 CCGGCAAGGGATCCAAAGG 60.754 63.158 15.23 3.88 35.97 3.11
308 309 2.418083 CGGCAAGGGATCCAAAGGC 61.418 63.158 15.23 13.01 0.00 4.35
309 310 1.305213 GGCAAGGGATCCAAAGGCA 60.305 57.895 15.23 0.00 0.00 4.75
310 311 1.607801 GGCAAGGGATCCAAAGGCAC 61.608 60.000 15.23 2.48 0.00 5.01
311 312 1.607801 GCAAGGGATCCAAAGGCACC 61.608 60.000 15.23 0.00 0.00 5.01
312 313 0.251742 CAAGGGATCCAAAGGCACCA 60.252 55.000 15.23 0.00 0.00 4.17
342 343 1.383412 GTAGTCAAACGTTACCGCGAC 59.617 52.381 8.23 4.05 37.70 5.19
347 348 3.615536 AACGTTACCGCGACCGAGG 62.616 63.158 8.23 10.54 41.00 4.63
440 441 5.445845 CGTGGGTGTAATTAACTCAAACAC 58.554 41.667 3.03 0.00 39.72 3.32
459 460 7.830201 TCAAACACTTAAAAGAGAGTGGGTTTA 59.170 33.333 8.20 0.00 45.78 2.01
462 463 7.993101 ACACTTAAAAGAGAGTGGGTTTAAAC 58.007 34.615 9.98 9.98 45.78 2.01
510 513 4.344679 TCAAATCAGTGATTTTGGCCACTT 59.655 37.500 25.20 2.03 39.82 3.16
521 524 1.373748 GGCCACTTCGACACGCTTA 60.374 57.895 0.00 0.00 0.00 3.09
522 525 0.739813 GGCCACTTCGACACGCTTAT 60.740 55.000 0.00 0.00 0.00 1.73
531 534 2.025359 GACACGCTTATCTGCCGTGC 62.025 60.000 11.68 2.55 39.30 5.34
532 535 2.511600 ACGCTTATCTGCCGTGCC 60.512 61.111 0.00 0.00 0.00 5.01
533 536 2.202932 CGCTTATCTGCCGTGCCT 60.203 61.111 0.00 0.00 0.00 4.75
534 537 2.528743 CGCTTATCTGCCGTGCCTG 61.529 63.158 0.00 0.00 0.00 4.85
535 538 1.450312 GCTTATCTGCCGTGCCTGT 60.450 57.895 0.00 0.00 0.00 4.00
585 598 2.039624 AGGGCCGTCTCCATGACT 59.960 61.111 0.00 0.00 43.25 3.41
631 654 0.481128 ACCGGAACCCCAAAAGATGT 59.519 50.000 9.46 0.00 0.00 3.06
641 664 3.558321 CCCCAAAAGATGTCGTCCAACTA 60.558 47.826 0.00 0.00 0.00 2.24
642 665 3.435671 CCCAAAAGATGTCGTCCAACTAC 59.564 47.826 0.00 0.00 0.00 2.73
643 666 3.435671 CCAAAAGATGTCGTCCAACTACC 59.564 47.826 0.00 0.00 0.00 3.18
644 667 3.329929 AAAGATGTCGTCCAACTACCC 57.670 47.619 0.00 0.00 0.00 3.69
667 690 2.176792 GTTTGCTGCAGCCGCTAC 59.823 61.111 34.64 21.87 41.18 3.58
751 774 4.329545 GCCCAGAGCACGGTCCAA 62.330 66.667 0.00 0.00 42.97 3.53
752 775 2.429930 CCCAGAGCACGGTCCAAA 59.570 61.111 0.00 0.00 0.00 3.28
772 805 0.680921 GCCAAAGGCTGCCATGTCTA 60.681 55.000 22.65 0.00 46.69 2.59
898 931 1.741055 CGACGGCTAGCATAAAACCCA 60.741 52.381 18.24 0.00 0.00 4.51
1404 1483 4.521062 GAGCTCATCGCGCACCCT 62.521 66.667 9.40 0.00 45.59 4.34
1890 1978 2.125106 GCCACCTTCGCGGAGATT 60.125 61.111 18.24 0.00 36.31 2.40
1903 1991 1.225745 GAGATTTGCAACGACGCCG 60.226 57.895 0.00 0.00 42.50 6.46
2154 2276 7.068839 GGTAACTCCATCACTCTCTGATTCTTA 59.931 40.741 0.00 0.00 37.53 2.10
2163 2293 4.709397 ACTCTCTGATTCTTAGTCACTGGG 59.291 45.833 0.00 0.00 0.00 4.45
2173 2303 4.652421 TCTTAGTCACTGGGTTGTTAGTGT 59.348 41.667 0.00 0.00 43.59 3.55
2211 2348 0.758310 TGTGGCATTGTGAAAGGGCA 60.758 50.000 0.00 0.00 0.00 5.36
2267 2408 4.617253 TCAGAGGCTAGCTTGTGTTTAA 57.383 40.909 21.13 1.80 0.00 1.52
2268 2409 4.315803 TCAGAGGCTAGCTTGTGTTTAAC 58.684 43.478 21.13 0.00 0.00 2.01
2310 2456 6.598064 AGGTAGTGGTTATGTTTGATAAGTGC 59.402 38.462 0.00 0.00 0.00 4.40
2377 2524 8.565896 TTGAATATGGTCATGGTCTTATATGC 57.434 34.615 0.00 0.00 0.00 3.14
2386 2538 3.653344 TGGTCTTATATGCGTGAGATGC 58.347 45.455 0.00 0.00 0.00 3.91
2402 2644 9.227490 GCGTGAGATGCATATATAACTTACTAG 57.773 37.037 0.00 0.00 0.00 2.57
2485 2755 8.609617 TTGACTAAGCATATGCCCTATATACT 57.390 34.615 23.96 0.00 43.38 2.12
2488 2759 9.319143 GACTAAGCATATGCCCTATATACTTTG 57.681 37.037 23.96 11.28 43.38 2.77
2490 2761 7.928307 AAGCATATGCCCTATATACTTTGTG 57.072 36.000 23.96 0.00 43.38 3.33
2493 2764 6.655003 GCATATGCCCTATATACTTTGTGTGT 59.345 38.462 17.26 0.00 30.75 3.72
2726 3025 4.141937 TGTGAATAGCCCAGTCATGTAGTC 60.142 45.833 0.00 0.00 33.07 2.59
2727 3026 4.100189 GTGAATAGCCCAGTCATGTAGTCT 59.900 45.833 0.00 0.00 33.07 3.24
2730 3029 3.340814 AGCCCAGTCATGTAGTCTTTG 57.659 47.619 0.00 0.00 0.00 2.77
2731 3030 2.639839 AGCCCAGTCATGTAGTCTTTGT 59.360 45.455 0.00 0.00 0.00 2.83
2732 3031 2.744202 GCCCAGTCATGTAGTCTTTGTG 59.256 50.000 0.00 0.00 0.00 3.33
2733 3032 2.744202 CCCAGTCATGTAGTCTTTGTGC 59.256 50.000 0.00 0.00 0.00 4.57
2734 3033 3.557898 CCCAGTCATGTAGTCTTTGTGCT 60.558 47.826 0.00 0.00 0.00 4.40
2735 3034 4.322725 CCCAGTCATGTAGTCTTTGTGCTA 60.323 45.833 0.00 0.00 0.00 3.49
2832 3157 2.368439 GGCCTGTTGTTAGATGCATGA 58.632 47.619 2.46 0.00 0.00 3.07
2835 3160 3.441572 GCCTGTTGTTAGATGCATGAGTT 59.558 43.478 2.46 0.00 0.00 3.01
2943 4068 5.732331 AAGGTCCTTCCATGGATTTCATA 57.268 39.130 17.06 0.00 38.52 2.15
2958 4083 6.126507 TGGATTTCATATGGCTCCTTGAGTTA 60.127 38.462 15.57 0.00 31.39 2.24
2959 4084 6.944862 GGATTTCATATGGCTCCTTGAGTTAT 59.055 38.462 2.13 0.00 31.39 1.89
2960 4085 8.103305 GGATTTCATATGGCTCCTTGAGTTATA 58.897 37.037 2.13 0.00 31.39 0.98
2962 4087 8.908786 TTTCATATGGCTCCTTGAGTTATAAG 57.091 34.615 2.13 0.00 31.39 1.73
2963 4088 6.467677 TCATATGGCTCCTTGAGTTATAAGC 58.532 40.000 2.13 0.00 31.39 3.09
2964 4090 6.270927 TCATATGGCTCCTTGAGTTATAAGCT 59.729 38.462 2.13 0.00 31.39 3.74
2965 4091 4.844349 TGGCTCCTTGAGTTATAAGCTT 57.156 40.909 3.48 3.48 31.39 3.74
2966 4092 5.179452 TGGCTCCTTGAGTTATAAGCTTT 57.821 39.130 3.20 0.00 31.39 3.51
3086 4212 6.413018 AGAGTCGTAAAAGAAAACAACGTT 57.587 33.333 0.00 0.00 35.21 3.99
3534 4660 1.202627 GCCACAAAATCCTTGCCAACA 60.203 47.619 0.00 0.00 0.00 3.33
4102 5228 1.554617 CCCCTTCCAAAATGGCGAATT 59.445 47.619 0.00 0.00 37.47 2.17
4402 5535 7.387643 ACTGGAACCTCAAAGAAAGATAGTAC 58.612 38.462 0.00 0.00 0.00 2.73
4507 5640 6.373186 AAGTTTCTTTTCGAACCGATCTTT 57.627 33.333 0.00 0.00 35.23 2.52
4670 5828 9.744468 AACAACTCGCTTTTATGAAAGTTAATT 57.256 25.926 11.22 0.34 43.36 1.40
4671 5829 9.180678 ACAACTCGCTTTTATGAAAGTTAATTG 57.819 29.630 11.22 12.25 43.36 2.32
4672 5830 9.393249 CAACTCGCTTTTATGAAAGTTAATTGA 57.607 29.630 11.22 1.21 43.36 2.57
4673 5831 9.612620 AACTCGCTTTTATGAAAGTTAATTGAG 57.387 29.630 11.22 10.53 43.36 3.02
4674 5832 8.784043 ACTCGCTTTTATGAAAGTTAATTGAGT 58.216 29.630 11.22 11.01 43.36 3.41
4675 5833 9.612620 CTCGCTTTTATGAAAGTTAATTGAGTT 57.387 29.630 11.22 0.00 43.36 3.01
4707 5867 8.272545 TGCAGCTCCAACATTGAATATATATC 57.727 34.615 0.00 0.00 0.00 1.63
4709 5869 7.278646 GCAGCTCCAACATTGAATATATATCGA 59.721 37.037 0.00 0.00 0.00 3.59
4741 5901 7.310664 TCTAAACATACTCTCTGTTACGGTTG 58.689 38.462 0.00 0.00 35.84 3.77
4786 5948 2.429971 TGATAGAAGCTGTCTGCAGGAG 59.570 50.000 15.13 11.40 45.94 3.69
4820 5987 7.199766 CCAGTGTTTGCTTGTTTAAACATAGA 58.800 34.615 21.17 6.46 45.28 1.98
4866 6038 2.559668 GCGGTAGTATATAGTGGCCACA 59.440 50.000 36.39 22.64 0.00 4.17
4925 6129 5.739630 GTCGGATAATATGCATAGTGAGTCG 59.260 44.000 16.61 13.65 0.00 4.18
4943 6154 6.924060 GTGAGTCGGCTGTTAGACATAAATAT 59.076 38.462 0.00 0.00 39.67 1.28
5047 6259 3.142174 GTTCCTGAAGGTTCTCTGGTTG 58.858 50.000 0.00 0.00 36.20 3.77
5096 6308 4.536364 TCTAATTGATTGCTGTTAGCGC 57.464 40.909 0.00 0.00 46.26 5.92
5306 6617 7.605691 ACAAGTTGGCTGATATAATATGCTCTC 59.394 37.037 7.96 0.00 0.00 3.20
5525 6919 8.037382 GGTAGGTCATTTTAGTCTACCAAAAC 57.963 38.462 11.58 0.00 45.48 2.43
5526 6920 7.662669 GGTAGGTCATTTTAGTCTACCAAAACA 59.337 37.037 11.58 0.00 45.48 2.83
5529 6923 7.119262 AGGTCATTTTAGTCTACCAAAACATCG 59.881 37.037 0.00 0.00 32.43 3.84
5532 6926 9.661563 TCATTTTAGTCTACCAAAACATCGTAT 57.338 29.630 0.00 0.00 0.00 3.06
5616 7120 0.741326 TCATACAGACTCTGCCGCTC 59.259 55.000 5.92 0.00 34.37 5.03
5625 7131 3.437049 AGACTCTGCCGCTCAAAATTTAC 59.563 43.478 0.00 0.00 0.00 2.01
5700 7207 0.392193 GATGCTGAGTGACCACTGGG 60.392 60.000 7.47 1.59 42.66 4.45
5711 7218 2.658422 CACTGGGTTGGCAATGGC 59.342 61.111 1.92 0.00 40.13 4.40
5712 7219 1.909781 CACTGGGTTGGCAATGGCT 60.910 57.895 8.59 0.00 40.87 4.75
5713 7220 1.909781 ACTGGGTTGGCAATGGCTG 60.910 57.895 8.59 0.00 40.87 4.85
5739 7271 8.786826 AATATTTCGGTGATCACTGTTTTAGA 57.213 30.769 29.34 10.51 38.77 2.10
5827 7368 3.331478 CTGAAGTCCAGTTCTGATGCT 57.669 47.619 1.00 0.00 38.10 3.79
5842 7383 5.542616 CTGATGCTTCAGTTAGACCTTTG 57.457 43.478 18.96 0.00 43.73 2.77
5851 7420 6.937436 TCAGTTAGACCTTTGTTTTTCCTC 57.063 37.500 0.00 0.00 0.00 3.71
5865 7434 5.482175 TGTTTTTCCTCTTGAGGGAACAAAA 59.518 36.000 20.56 15.26 41.84 2.44
5912 7998 0.038892 GAACGTTGCTCCGGACTACA 60.039 55.000 5.00 0.00 0.00 2.74
5942 8323 2.684881 AGCGTGTCATGAAATTCATCCC 59.315 45.455 5.36 0.32 34.28 3.85
5979 8360 9.369904 GCAAATATGAAATTTATCCTTGTGTGT 57.630 29.630 0.00 0.00 0.00 3.72
5983 8364 9.685276 ATATGAAATTTATCCTTGTGTGTGAGA 57.315 29.630 0.00 0.00 0.00 3.27
6007 8388 2.797285 TTTAGGGAAAAGGGGCCAAA 57.203 45.000 4.39 0.00 0.00 3.28
6008 8389 2.797285 TTAGGGAAAAGGGGCCAAAA 57.203 45.000 4.39 0.00 0.00 2.44
6010 8391 1.127567 AGGGAAAAGGGGCCAAAAGC 61.128 55.000 4.39 0.00 42.60 3.51
6029 8410 2.417097 GCGGCCCCATTGCATTAC 59.583 61.111 0.00 0.00 0.00 1.89
6031 8412 1.756172 CGGCCCCATTGCATTACCA 60.756 57.895 0.00 0.00 0.00 3.25
6032 8413 1.326213 CGGCCCCATTGCATTACCAA 61.326 55.000 0.00 0.00 0.00 3.67
6033 8414 1.130777 GGCCCCATTGCATTACCAAT 58.869 50.000 0.00 0.00 35.90 3.16
6042 8423 5.999205 ATTGCATTACCAATGAAACCAGA 57.001 34.783 3.11 0.00 39.19 3.86
6043 8424 5.389859 TTGCATTACCAATGAAACCAGAG 57.610 39.130 3.11 0.00 41.46 3.35
6044 8425 4.406456 TGCATTACCAATGAAACCAGAGT 58.594 39.130 3.11 0.00 41.46 3.24
6046 8427 6.186957 TGCATTACCAATGAAACCAGAGTAT 58.813 36.000 3.11 0.00 41.46 2.12
6047 8428 6.663093 TGCATTACCAATGAAACCAGAGTATT 59.337 34.615 3.11 0.00 41.46 1.89
6048 8429 7.831690 TGCATTACCAATGAAACCAGAGTATTA 59.168 33.333 3.11 0.00 41.46 0.98
6049 8430 8.345565 GCATTACCAATGAAACCAGAGTATTAG 58.654 37.037 3.11 0.00 41.46 1.73
6050 8431 9.613428 CATTACCAATGAAACCAGAGTATTAGA 57.387 33.333 0.00 0.00 41.46 2.10
6053 8434 8.934023 ACCAATGAAACCAGAGTATTAGAAAA 57.066 30.769 0.00 0.00 0.00 2.29
6054 8435 8.793592 ACCAATGAAACCAGAGTATTAGAAAAC 58.206 33.333 0.00 0.00 0.00 2.43
6055 8436 8.244113 CCAATGAAACCAGAGTATTAGAAAACC 58.756 37.037 0.00 0.00 0.00 3.27
6056 8437 8.792633 CAATGAAACCAGAGTATTAGAAAACCA 58.207 33.333 0.00 0.00 0.00 3.67
6060 8441 9.886132 GAAACCAGAGTATTAGAAAACCATCTA 57.114 33.333 0.00 0.00 0.00 1.98
6071 8452 8.851541 TTAGAAAACCATCTATTACAAACCGT 57.148 30.769 0.00 0.00 32.20 4.83
6072 8453 7.141100 AGAAAACCATCTATTACAAACCGTG 57.859 36.000 0.00 0.00 0.00 4.94
6073 8454 6.938030 AGAAAACCATCTATTACAAACCGTGA 59.062 34.615 0.00 0.00 0.00 4.35
6075 8456 6.737254 AACCATCTATTACAAACCGTGAAG 57.263 37.500 0.00 0.00 0.00 3.02
6078 8459 4.546829 TCTATTACAAACCGTGAAGGCT 57.453 40.909 0.00 0.00 46.52 4.58
6079 8460 5.664294 TCTATTACAAACCGTGAAGGCTA 57.336 39.130 0.00 0.00 46.52 3.93
6080 8461 5.657474 TCTATTACAAACCGTGAAGGCTAG 58.343 41.667 0.00 0.00 46.52 3.42
6081 8462 4.546829 ATTACAAACCGTGAAGGCTAGA 57.453 40.909 0.00 0.00 46.52 2.43
6082 8463 2.922740 ACAAACCGTGAAGGCTAGAA 57.077 45.000 0.00 0.00 46.52 2.10
6086 8467 0.247736 ACCGTGAAGGCTAGAAGCAG 59.752 55.000 0.00 0.00 44.75 4.24
6087 8468 0.247736 CCGTGAAGGCTAGAAGCAGT 59.752 55.000 0.00 0.00 44.75 4.40
6088 8469 1.476891 CCGTGAAGGCTAGAAGCAGTA 59.523 52.381 0.00 0.00 44.75 2.74
6089 8470 2.531206 CGTGAAGGCTAGAAGCAGTAC 58.469 52.381 0.00 0.00 44.75 2.73
6090 8471 2.164624 CGTGAAGGCTAGAAGCAGTACT 59.835 50.000 0.00 0.00 44.75 2.73
6091 8472 3.516615 GTGAAGGCTAGAAGCAGTACTG 58.483 50.000 18.93 18.93 44.75 2.74
6104 8485 0.610687 AGTACTGCCTTGGCAGAGAC 59.389 55.000 38.49 32.26 39.96 3.36
6105 8486 0.610687 GTACTGCCTTGGCAGAGACT 59.389 55.000 38.49 23.18 39.96 3.24
6106 8487 0.610174 TACTGCCTTGGCAGAGACTG 59.390 55.000 38.49 18.87 39.96 3.51
6146 8559 4.022589 AGCACACCAAAATGACAGATTCAG 60.023 41.667 0.00 0.00 37.77 3.02
6150 8563 5.005740 CACCAAAATGACAGATTCAGAGGA 58.994 41.667 0.00 0.00 37.77 3.71
6161 8574 7.126268 TGACAGATTCAGAGGAATATCCAAGAA 59.874 37.037 0.00 0.71 43.69 2.52
6165 8578 7.992033 AGATTCAGAGGAATATCCAAGAAGTTG 59.008 37.037 0.00 0.00 43.69 3.16
6168 8581 5.065731 CAGAGGAATATCCAAGAAGTTGTGC 59.934 44.000 0.00 0.00 39.61 4.57
6172 8585 1.967319 ATCCAAGAAGTTGTGCGTGT 58.033 45.000 0.00 0.00 30.95 4.49
6231 8644 1.674221 GCTCAGTGATTTCTGCCGAGT 60.674 52.381 0.00 0.00 35.63 4.18
6236 8649 0.610174 TGATTTCTGCCGAGTGAGCT 59.390 50.000 0.00 0.00 0.00 4.09
6237 8650 1.002430 TGATTTCTGCCGAGTGAGCTT 59.998 47.619 0.00 0.00 0.00 3.74
6241 8654 0.603707 TCTGCCGAGTGAGCTTTTGG 60.604 55.000 0.00 0.00 0.00 3.28
6242 8655 0.603707 CTGCCGAGTGAGCTTTTGGA 60.604 55.000 0.00 0.00 0.00 3.53
6243 8656 0.179032 TGCCGAGTGAGCTTTTGGAA 60.179 50.000 0.00 0.00 0.00 3.53
6244 8657 0.951558 GCCGAGTGAGCTTTTGGAAA 59.048 50.000 0.00 0.00 0.00 3.13
6245 8658 1.541588 GCCGAGTGAGCTTTTGGAAAT 59.458 47.619 0.00 0.00 0.00 2.17
6247 8660 3.378427 GCCGAGTGAGCTTTTGGAAATAT 59.622 43.478 0.00 0.00 0.00 1.28
6248 8661 4.731773 GCCGAGTGAGCTTTTGGAAATATG 60.732 45.833 0.00 0.00 0.00 1.78
6249 8662 4.346129 CGAGTGAGCTTTTGGAAATATGC 58.654 43.478 0.00 0.00 0.00 3.14
6251 8664 4.347607 AGTGAGCTTTTGGAAATATGCCT 58.652 39.130 0.00 0.00 0.00 4.75
6252 8665 4.774200 AGTGAGCTTTTGGAAATATGCCTT 59.226 37.500 0.00 0.00 0.00 4.35
6253 8666 5.105063 GTGAGCTTTTGGAAATATGCCTTC 58.895 41.667 0.00 0.00 0.00 3.46
6254 8667 4.771577 TGAGCTTTTGGAAATATGCCTTCA 59.228 37.500 0.00 0.00 0.00 3.02
6266 8679 2.486796 GCCTTCAGCATCTTCCACC 58.513 57.895 0.00 0.00 42.97 4.61
6268 8681 1.684248 GCCTTCAGCATCTTCCACCAT 60.684 52.381 0.00 0.00 42.97 3.55
6269 8682 2.731572 CCTTCAGCATCTTCCACCATT 58.268 47.619 0.00 0.00 0.00 3.16
6270 8683 2.426024 CCTTCAGCATCTTCCACCATTG 59.574 50.000 0.00 0.00 0.00 2.82
6273 8686 2.306805 TCAGCATCTTCCACCATTGAGT 59.693 45.455 0.00 0.00 0.00 3.41
6274 8687 3.087031 CAGCATCTTCCACCATTGAGTT 58.913 45.455 0.00 0.00 0.00 3.01
6276 8689 4.021719 CAGCATCTTCCACCATTGAGTTTT 60.022 41.667 0.00 0.00 0.00 2.43
6279 8692 5.279156 GCATCTTCCACCATTGAGTTTTCTT 60.279 40.000 0.00 0.00 0.00 2.52
6280 8693 6.739565 GCATCTTCCACCATTGAGTTTTCTTT 60.740 38.462 0.00 0.00 0.00 2.52
6281 8694 6.391227 TCTTCCACCATTGAGTTTTCTTTC 57.609 37.500 0.00 0.00 0.00 2.62
6284 8697 4.274950 TCCACCATTGAGTTTTCTTTCGTC 59.725 41.667 0.00 0.00 0.00 4.20
6285 8698 4.275936 CCACCATTGAGTTTTCTTTCGTCT 59.724 41.667 0.00 0.00 0.00 4.18
6287 8700 6.265577 CACCATTGAGTTTTCTTTCGTCTTT 58.734 36.000 0.00 0.00 0.00 2.52
6288 8701 6.751888 CACCATTGAGTTTTCTTTCGTCTTTT 59.248 34.615 0.00 0.00 0.00 2.27
6289 8702 7.913297 CACCATTGAGTTTTCTTTCGTCTTTTA 59.087 33.333 0.00 0.00 0.00 1.52
6291 8704 7.913297 CCATTGAGTTTTCTTTCGTCTTTTACA 59.087 33.333 0.00 0.00 0.00 2.41
6292 8705 8.947940 CATTGAGTTTTCTTTCGTCTTTTACAG 58.052 33.333 0.00 0.00 0.00 2.74
6293 8706 7.605410 TGAGTTTTCTTTCGTCTTTTACAGT 57.395 32.000 0.00 0.00 0.00 3.55
6294 8707 8.706492 TGAGTTTTCTTTCGTCTTTTACAGTA 57.294 30.769 0.00 0.00 0.00 2.74
6296 8709 8.483307 AGTTTTCTTTCGTCTTTTACAGTACA 57.517 30.769 0.00 0.00 0.00 2.90
6297 8710 8.938906 AGTTTTCTTTCGTCTTTTACAGTACAA 58.061 29.630 0.00 0.00 0.00 2.41
6298 8711 9.545611 GTTTTCTTTCGTCTTTTACAGTACAAA 57.454 29.630 0.00 0.00 0.00 2.83
6301 8714 9.763465 TTCTTTCGTCTTTTACAGTACAAAAAG 57.237 29.630 16.16 16.16 41.79 2.27
6302 8715 9.153721 TCTTTCGTCTTTTACAGTACAAAAAGA 57.846 29.630 18.94 18.94 45.01 2.52
6303 8716 9.422196 CTTTCGTCTTTTACAGTACAAAAAGAG 57.578 33.333 21.44 17.10 46.72 2.85
6304 8717 7.473027 TCGTCTTTTACAGTACAAAAAGAGG 57.527 36.000 25.57 25.57 46.72 3.69
6308 8721 7.849515 GTCTTTTACAGTACAAAAAGAGGAACG 59.150 37.037 21.44 0.00 46.72 3.95
6309 8722 7.765360 TCTTTTACAGTACAAAAAGAGGAACGA 59.235 33.333 18.94 4.48 43.34 3.85
6310 8723 7.473027 TTTACAGTACAAAAAGAGGAACGAG 57.527 36.000 0.00 0.00 0.00 4.18
6311 8724 4.377897 ACAGTACAAAAAGAGGAACGAGG 58.622 43.478 0.00 0.00 0.00 4.63
6312 8725 4.100498 ACAGTACAAAAAGAGGAACGAGGA 59.900 41.667 0.00 0.00 0.00 3.71
6314 8727 3.553828 ACAAAAAGAGGAACGAGGACA 57.446 42.857 0.00 0.00 0.00 4.02
6315 8728 4.086706 ACAAAAAGAGGAACGAGGACAT 57.913 40.909 0.00 0.00 0.00 3.06
6316 8729 3.815401 ACAAAAAGAGGAACGAGGACATG 59.185 43.478 0.00 0.00 0.00 3.21
6317 8730 2.100605 AAAGAGGAACGAGGACATGC 57.899 50.000 0.00 0.00 0.00 4.06
6318 8731 1.270907 AAGAGGAACGAGGACATGCT 58.729 50.000 0.00 0.00 0.00 3.79
6320 8733 1.205893 AGAGGAACGAGGACATGCTTC 59.794 52.381 0.00 0.00 0.00 3.86
6321 8734 0.976641 AGGAACGAGGACATGCTTCA 59.023 50.000 0.00 0.00 0.00 3.02
6322 8735 1.556911 AGGAACGAGGACATGCTTCAT 59.443 47.619 0.00 0.00 0.00 2.57
6327 8740 2.299993 GAGGACATGCTTCATCGACA 57.700 50.000 0.00 0.00 0.00 4.35
6330 8743 3.614092 AGGACATGCTTCATCGACATTT 58.386 40.909 0.00 0.00 0.00 2.32
6333 8746 3.614092 ACATGCTTCATCGACATTTCCT 58.386 40.909 0.00 0.00 0.00 3.36
6336 8749 6.524734 ACATGCTTCATCGACATTTCCTATA 58.475 36.000 0.00 0.00 0.00 1.31
6338 8751 4.982295 TGCTTCATCGACATTTCCTATACG 59.018 41.667 0.00 0.00 0.00 3.06
6339 8752 4.386049 GCTTCATCGACATTTCCTATACGG 59.614 45.833 0.00 0.00 0.00 4.02
6341 8754 2.410785 TCGACATTTCCTATACGGCG 57.589 50.000 4.80 4.80 0.00 6.46
6342 8755 0.782384 CGACATTTCCTATACGGCGC 59.218 55.000 6.90 0.00 0.00 6.53
6344 8757 0.250166 ACATTTCCTATACGGCGCCC 60.250 55.000 23.46 2.84 0.00 6.13
6358 8771 4.382320 GCCCGTGGCTCCGTTGTA 62.382 66.667 7.58 0.00 46.69 2.41
6360 8773 2.125673 CCGTGGCTCCGTTGTAGG 60.126 66.667 0.00 0.00 0.00 3.18
6361 8774 2.125673 CGTGGCTCCGTTGTAGGG 60.126 66.667 0.00 0.00 0.00 3.53
6362 8775 2.939261 CGTGGCTCCGTTGTAGGGT 61.939 63.158 0.00 0.00 0.00 4.34
6363 8776 1.373812 GTGGCTCCGTTGTAGGGTT 59.626 57.895 0.00 0.00 0.00 4.11
6365 8778 1.002315 GTGGCTCCGTTGTAGGGTTAA 59.998 52.381 0.00 0.00 0.00 2.01
6366 8779 1.002315 TGGCTCCGTTGTAGGGTTAAC 59.998 52.381 0.00 0.00 0.00 2.01
6367 8780 1.353076 GCTCCGTTGTAGGGTTAACG 58.647 55.000 0.00 0.00 46.58 3.18
6371 8784 0.320596 CGTTGTAGGGTTAACGGGCA 60.321 55.000 0.00 0.00 44.16 5.36
6372 8785 1.159285 GTTGTAGGGTTAACGGGCAC 58.841 55.000 0.00 0.00 0.00 5.01
6373 8786 0.763652 TTGTAGGGTTAACGGGCACA 59.236 50.000 0.00 0.00 0.00 4.57
6377 8790 1.526455 GGGTTAACGGGCACACACA 60.526 57.895 0.00 0.00 0.00 3.72
6378 8791 1.650363 GGTTAACGGGCACACACAC 59.350 57.895 0.00 0.00 0.00 3.82
6379 8792 1.650363 GTTAACGGGCACACACACC 59.350 57.895 0.00 0.00 0.00 4.16
6380 8793 1.526455 TTAACGGGCACACACACCC 60.526 57.895 0.00 0.00 43.25 4.61
6382 8795 1.985460 TAACGGGCACACACACCCTT 61.985 55.000 0.00 0.00 44.63 3.95
6383 8796 2.978010 CGGGCACACACACCCTTC 60.978 66.667 0.00 0.00 44.63 3.46
6384 8797 2.515901 GGGCACACACACCCTTCT 59.484 61.111 0.00 0.00 43.36 2.85
6385 8798 1.600916 GGGCACACACACCCTTCTC 60.601 63.158 0.00 0.00 43.36 2.87
6391 8804 1.534235 ACACACCCTTCTCTCCGCT 60.534 57.895 0.00 0.00 0.00 5.52
6392 8805 1.079543 CACACCCTTCTCTCCGCTG 60.080 63.158 0.00 0.00 0.00 5.18
6394 8807 1.984570 CACCCTTCTCTCCGCTGGA 60.985 63.158 0.00 0.00 0.00 3.86
6395 8808 1.985116 ACCCTTCTCTCCGCTGGAC 60.985 63.158 0.00 0.00 0.00 4.02
6397 8810 1.984570 CCTTCTCTCCGCTGGACCA 60.985 63.158 0.00 0.00 0.00 4.02
6399 8812 0.390472 CTTCTCTCCGCTGGACCAAC 60.390 60.000 0.00 0.00 0.00 3.77
6400 8813 1.827399 TTCTCTCCGCTGGACCAACC 61.827 60.000 0.00 0.00 39.54 3.77
6402 8815 3.636231 CTCCGCTGGACCAACCCA 61.636 66.667 0.00 0.00 38.00 4.51
6405 8818 3.953775 CGCTGGACCAACCCACCT 61.954 66.667 0.00 0.00 38.00 4.00
6406 8819 2.520968 GCTGGACCAACCCACCTT 59.479 61.111 0.00 0.00 38.00 3.50
6407 8820 1.765074 GCTGGACCAACCCACCTTA 59.235 57.895 0.00 0.00 38.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.931969 CGGAATAGGGTTTTACGGTGAC 59.068 50.000 0.00 0.00 0.00 3.67
30 31 2.093553 CCGGAATAGGGTTTTACGGTGA 60.094 50.000 0.00 0.00 35.47 4.02
31 32 2.282407 CCGGAATAGGGTTTTACGGTG 58.718 52.381 0.00 0.00 35.47 4.94
32 33 2.696989 CCGGAATAGGGTTTTACGGT 57.303 50.000 0.00 0.00 35.47 4.83
33 34 2.554142 GACCGGAATAGGGTTTTACGG 58.446 52.381 9.46 5.56 44.86 4.02
34 35 2.195922 CGACCGGAATAGGGTTTTACG 58.804 52.381 9.46 0.00 38.07 3.18
35 36 1.935873 GCGACCGGAATAGGGTTTTAC 59.064 52.381 9.46 0.00 38.07 2.01
36 37 1.134431 GGCGACCGGAATAGGGTTTTA 60.134 52.381 9.46 0.00 38.07 1.52
37 38 0.393402 GGCGACCGGAATAGGGTTTT 60.393 55.000 9.46 0.00 38.07 2.43
38 39 1.222661 GGCGACCGGAATAGGGTTT 59.777 57.895 9.46 0.00 38.07 3.27
39 40 0.397535 TAGGCGACCGGAATAGGGTT 60.398 55.000 9.46 0.00 38.07 4.11
40 41 1.111715 GTAGGCGACCGGAATAGGGT 61.112 60.000 9.46 0.00 41.48 4.34
41 42 1.664306 GTAGGCGACCGGAATAGGG 59.336 63.158 9.46 0.00 35.02 3.53
42 43 1.664306 GGTAGGCGACCGGAATAGG 59.336 63.158 9.46 0.00 38.87 2.57
68 69 4.660938 GTGGAGTGGTGGGGTGGC 62.661 72.222 0.00 0.00 0.00 5.01
69 70 3.174987 TGTGGAGTGGTGGGGTGG 61.175 66.667 0.00 0.00 0.00 4.61
70 71 2.113139 GTGTGGAGTGGTGGGGTG 59.887 66.667 0.00 0.00 0.00 4.61
71 72 3.175710 GGTGTGGAGTGGTGGGGT 61.176 66.667 0.00 0.00 0.00 4.95
72 73 2.854032 AGGTGTGGAGTGGTGGGG 60.854 66.667 0.00 0.00 0.00 4.96
73 74 2.146724 TGAGGTGTGGAGTGGTGGG 61.147 63.158 0.00 0.00 0.00 4.61
74 75 1.071471 GTGAGGTGTGGAGTGGTGG 59.929 63.158 0.00 0.00 0.00 4.61
75 76 1.071471 GGTGAGGTGTGGAGTGGTG 59.929 63.158 0.00 0.00 0.00 4.17
76 77 1.383943 TGGTGAGGTGTGGAGTGGT 60.384 57.895 0.00 0.00 0.00 4.16
77 78 1.071471 GTGGTGAGGTGTGGAGTGG 59.929 63.158 0.00 0.00 0.00 4.00
78 79 1.071471 GGTGGTGAGGTGTGGAGTG 59.929 63.158 0.00 0.00 0.00 3.51
79 80 0.986019 TTGGTGGTGAGGTGTGGAGT 60.986 55.000 0.00 0.00 0.00 3.85
80 81 0.535102 GTTGGTGGTGAGGTGTGGAG 60.535 60.000 0.00 0.00 0.00 3.86
81 82 1.529796 GTTGGTGGTGAGGTGTGGA 59.470 57.895 0.00 0.00 0.00 4.02
82 83 1.891919 CGTTGGTGGTGAGGTGTGG 60.892 63.158 0.00 0.00 0.00 4.17
83 84 1.153249 ACGTTGGTGGTGAGGTGTG 60.153 57.895 0.00 0.00 0.00 3.82
84 85 1.145377 GACGTTGGTGGTGAGGTGT 59.855 57.895 0.00 0.00 0.00 4.16
85 86 1.954146 CGACGTTGGTGGTGAGGTG 60.954 63.158 0.00 0.00 0.00 4.00
86 87 2.420043 CGACGTTGGTGGTGAGGT 59.580 61.111 0.00 0.00 0.00 3.85
87 88 3.041940 GCGACGTTGGTGGTGAGG 61.042 66.667 4.64 0.00 0.00 3.86
88 89 3.041940 GGCGACGTTGGTGGTGAG 61.042 66.667 4.64 0.00 0.00 3.51
125 126 4.451150 TTAGGCTGGCTCGGTGCG 62.451 66.667 7.13 0.00 44.05 5.34
126 127 2.804828 AAGTTAGGCTGGCTCGGTGC 62.805 60.000 7.13 0.00 41.94 5.01
127 128 0.535335 TAAGTTAGGCTGGCTCGGTG 59.465 55.000 7.13 0.00 0.00 4.94
128 129 0.824759 CTAAGTTAGGCTGGCTCGGT 59.175 55.000 7.13 0.00 0.00 4.69
129 130 0.530870 GCTAAGTTAGGCTGGCTCGG 60.531 60.000 7.13 0.00 0.00 4.63
130 131 0.530870 GGCTAAGTTAGGCTGGCTCG 60.531 60.000 25.07 0.00 46.78 5.03
131 132 3.388272 GGCTAAGTTAGGCTGGCTC 57.612 57.895 25.07 0.00 46.78 4.70
149 150 2.281761 GCAGCCGACCCCATATGG 60.282 66.667 15.41 15.41 0.00 2.74
150 151 1.598962 CTGCAGCCGACCCCATATG 60.599 63.158 0.00 0.00 0.00 1.78
151 152 2.831770 CTGCAGCCGACCCCATAT 59.168 61.111 0.00 0.00 0.00 1.78
152 153 4.175337 GCTGCAGCCGACCCCATA 62.175 66.667 28.76 0.00 34.31 2.74
180 181 4.838152 CAGGATGACCCACGCCGG 62.838 72.222 0.00 0.00 39.69 6.13
181 182 4.838152 CCAGGATGACCCACGCCG 62.838 72.222 0.00 0.00 39.69 6.46
182 183 4.489771 CCCAGGATGACCCACGCC 62.490 72.222 0.00 0.00 39.69 5.68
184 185 3.687321 CTGCCCAGGATGACCCACG 62.687 68.421 0.00 0.00 39.69 4.94
185 186 2.273449 CTGCCCAGGATGACCCAC 59.727 66.667 0.00 0.00 39.69 4.61
186 187 3.731728 GCTGCCCAGGATGACCCA 61.732 66.667 0.00 0.00 39.69 4.51
187 188 4.864334 CGCTGCCCAGGATGACCC 62.864 72.222 0.00 0.00 39.69 4.46
188 189 4.864334 CCGCTGCCCAGGATGACC 62.864 72.222 0.00 0.00 39.69 4.02
189 190 3.628646 AACCGCTGCCCAGGATGAC 62.629 63.158 0.00 0.00 39.69 3.06
190 191 3.329889 AACCGCTGCCCAGGATGA 61.330 61.111 0.00 0.00 39.69 2.92
191 192 3.136123 CAACCGCTGCCCAGGATG 61.136 66.667 0.00 0.00 0.00 3.51
200 201 1.067916 AAAAAGCTGGCAACCGCTG 59.932 52.632 0.03 0.00 38.60 5.18
201 202 1.067916 CAAAAAGCTGGCAACCGCT 59.932 52.632 0.00 0.00 38.60 5.52
202 203 0.809636 AACAAAAAGCTGGCAACCGC 60.810 50.000 0.00 0.00 37.44 5.68
203 204 1.202405 AGAACAAAAAGCTGGCAACCG 60.202 47.619 0.00 0.00 0.00 4.44
204 205 2.602257 AGAACAAAAAGCTGGCAACC 57.398 45.000 0.00 0.00 0.00 3.77
205 206 3.914364 CGATAGAACAAAAAGCTGGCAAC 59.086 43.478 0.00 0.00 39.76 4.17
206 207 3.818210 TCGATAGAACAAAAAGCTGGCAA 59.182 39.130 0.00 0.00 46.15 4.52
207 208 3.407698 TCGATAGAACAAAAAGCTGGCA 58.592 40.909 0.00 0.00 46.15 4.92
222 223 2.127042 GGCTCGCTCGCTCGATAG 60.127 66.667 0.00 0.00 37.87 2.08
223 224 2.000215 TTTGGCTCGCTCGCTCGATA 62.000 55.000 0.00 0.00 37.87 2.92
224 225 2.635229 ATTTGGCTCGCTCGCTCGAT 62.635 55.000 0.00 0.00 37.87 3.59
225 226 3.356639 ATTTGGCTCGCTCGCTCGA 62.357 57.895 0.00 0.00 36.94 4.04
226 227 2.864931 GATTTGGCTCGCTCGCTCG 61.865 63.158 0.00 0.00 0.00 5.03
227 228 2.864931 CGATTTGGCTCGCTCGCTC 61.865 63.158 0.00 0.00 0.00 5.03
228 229 2.887568 CGATTTGGCTCGCTCGCT 60.888 61.111 0.00 0.00 0.00 4.93
229 230 3.929948 CCGATTTGGCTCGCTCGC 61.930 66.667 0.00 0.00 37.33 5.03
238 239 4.464262 GGAGGCTAGCCGATTTGG 57.536 61.111 27.83 0.00 41.95 3.28
251 252 3.432051 CTAGCCTTGCCGACGGAGG 62.432 68.421 20.50 17.66 0.00 4.30
252 253 2.105128 CTAGCCTTGCCGACGGAG 59.895 66.667 20.50 6.87 0.00 4.63
253 254 4.143333 GCTAGCCTTGCCGACGGA 62.143 66.667 20.50 0.00 0.00 4.69
254 255 3.665675 AAGCTAGCCTTGCCGACGG 62.666 63.158 12.13 10.29 30.99 4.79
255 256 1.741770 AAAGCTAGCCTTGCCGACG 60.742 57.895 12.13 0.00 33.01 5.12
256 257 1.648467 CCAAAGCTAGCCTTGCCGAC 61.648 60.000 18.86 0.00 33.01 4.79
257 258 1.377202 CCAAAGCTAGCCTTGCCGA 60.377 57.895 18.86 0.00 33.01 5.54
258 259 3.056313 GCCAAAGCTAGCCTTGCCG 62.056 63.158 18.86 8.84 33.01 5.69
259 260 2.888111 GCCAAAGCTAGCCTTGCC 59.112 61.111 18.86 5.92 33.01 4.52
269 270 1.397343 GTTTACCTCGCTAGCCAAAGC 59.603 52.381 9.66 0.00 39.21 3.51
270 271 2.007608 GGTTTACCTCGCTAGCCAAAG 58.992 52.381 9.66 4.30 0.00 2.77
271 272 1.673626 CGGTTTACCTCGCTAGCCAAA 60.674 52.381 9.66 0.00 0.00 3.28
272 273 0.108520 CGGTTTACCTCGCTAGCCAA 60.109 55.000 9.66 0.00 0.00 4.52
273 274 1.514087 CGGTTTACCTCGCTAGCCA 59.486 57.895 9.66 0.00 0.00 4.75
274 275 1.227176 CCGGTTTACCTCGCTAGCC 60.227 63.158 9.66 0.00 0.00 3.93
275 276 1.881709 GCCGGTTTACCTCGCTAGC 60.882 63.158 4.06 4.06 0.00 3.42
276 277 0.108520 TTGCCGGTTTACCTCGCTAG 60.109 55.000 1.90 0.00 32.24 3.42
277 278 0.108520 CTTGCCGGTTTACCTCGCTA 60.109 55.000 1.90 2.15 32.24 4.26
278 279 1.375523 CTTGCCGGTTTACCTCGCT 60.376 57.895 1.90 0.00 32.24 4.93
279 280 2.396157 CCTTGCCGGTTTACCTCGC 61.396 63.158 1.90 0.00 0.00 5.03
280 281 1.743995 CCCTTGCCGGTTTACCTCG 60.744 63.158 1.90 0.00 0.00 4.63
281 282 0.255033 ATCCCTTGCCGGTTTACCTC 59.745 55.000 1.90 0.00 0.00 3.85
282 283 0.255033 GATCCCTTGCCGGTTTACCT 59.745 55.000 1.90 0.00 0.00 3.08
283 284 0.750546 GGATCCCTTGCCGGTTTACC 60.751 60.000 1.90 0.00 0.00 2.85
284 285 0.034863 TGGATCCCTTGCCGGTTTAC 60.035 55.000 9.90 0.00 0.00 2.01
285 286 0.699399 TTGGATCCCTTGCCGGTTTA 59.301 50.000 9.90 0.00 0.00 2.01
286 287 0.178947 TTTGGATCCCTTGCCGGTTT 60.179 50.000 9.90 0.00 0.00 3.27
287 288 0.611896 CTTTGGATCCCTTGCCGGTT 60.612 55.000 9.90 0.00 0.00 4.44
288 289 1.000896 CTTTGGATCCCTTGCCGGT 60.001 57.895 9.90 0.00 0.00 5.28
289 290 1.754234 CCTTTGGATCCCTTGCCGG 60.754 63.158 9.90 0.00 0.00 6.13
290 291 2.418083 GCCTTTGGATCCCTTGCCG 61.418 63.158 9.90 0.00 0.00 5.69
291 292 1.305213 TGCCTTTGGATCCCTTGCC 60.305 57.895 9.90 0.00 0.00 4.52
292 293 1.607801 GGTGCCTTTGGATCCCTTGC 61.608 60.000 9.90 7.47 0.00 4.01
293 294 0.251742 TGGTGCCTTTGGATCCCTTG 60.252 55.000 9.90 0.00 0.00 3.61
294 295 0.040204 CTGGTGCCTTTGGATCCCTT 59.960 55.000 9.90 0.00 0.00 3.95
295 296 1.693640 CTGGTGCCTTTGGATCCCT 59.306 57.895 9.90 0.00 0.00 4.20
296 297 2.054453 GCTGGTGCCTTTGGATCCC 61.054 63.158 9.90 0.00 0.00 3.85
297 298 3.608432 GCTGGTGCCTTTGGATCC 58.392 61.111 4.20 4.20 0.00 3.36
307 308 1.807142 GACTACAAAAGAGGCTGGTGC 59.193 52.381 0.00 0.00 38.76 5.01
308 309 3.126001 TGACTACAAAAGAGGCTGGTG 57.874 47.619 0.00 0.00 0.00 4.17
309 310 3.857157 TTGACTACAAAAGAGGCTGGT 57.143 42.857 0.00 0.00 32.73 4.00
310 311 3.058914 CGTTTGACTACAAAAGAGGCTGG 60.059 47.826 0.00 0.00 45.65 4.85
311 312 3.560068 ACGTTTGACTACAAAAGAGGCTG 59.440 43.478 13.36 0.00 45.65 4.85
312 313 3.805207 ACGTTTGACTACAAAAGAGGCT 58.195 40.909 13.36 0.00 45.65 4.58
359 360 6.332630 ACACAATCTTGAAAACCTCACAAAG 58.667 36.000 0.00 0.00 32.21 2.77
396 397 6.400940 CCACGGTACAAAAATTTGCATGAATC 60.401 38.462 0.00 0.00 41.79 2.52
407 408 7.231115 AGTTAATTACACCCACGGTACAAAAAT 59.769 33.333 0.00 0.00 32.11 1.82
440 441 6.140786 GCGTTTAAACCCACTCTCTTTTAAG 58.859 40.000 12.66 0.00 0.00 1.85
448 449 2.158871 TCACTGCGTTTAAACCCACTCT 60.159 45.455 12.66 0.00 0.00 3.24
459 460 0.749649 TGGCCAAAATCACTGCGTTT 59.250 45.000 0.61 0.00 0.00 3.60
462 463 1.959085 AGTGGCCAAAATCACTGCG 59.041 52.632 7.24 0.00 42.00 5.18
503 506 0.739813 ATAAGCGTGTCGAAGTGGCC 60.740 55.000 0.00 0.00 0.00 5.36
510 513 1.226575 CGGCAGATAAGCGTGTCGA 60.227 57.895 0.00 0.00 44.54 4.20
531 534 4.742201 CTCCGTCCGGTGCACAGG 62.742 72.222 27.96 27.96 36.47 4.00
532 535 3.991051 ACTCCGTCCGGTGCACAG 61.991 66.667 20.43 15.33 36.47 3.66
533 536 4.293648 CACTCCGTCCGGTGCACA 62.294 66.667 20.43 0.00 36.47 4.57
534 537 3.802418 AACACTCCGTCCGGTGCAC 62.802 63.158 8.80 8.80 36.99 4.57
535 538 3.096633 AAACACTCCGTCCGGTGCA 62.097 57.895 0.00 0.00 36.99 4.57
540 549 1.959226 CCACCAAACACTCCGTCCG 60.959 63.158 0.00 0.00 0.00 4.79
547 556 1.047596 TGCCATTGCCACCAAACACT 61.048 50.000 0.00 0.00 36.33 3.55
553 562 2.036098 CCTCTGCCATTGCCACCA 59.964 61.111 0.00 0.00 36.33 4.17
585 598 2.844362 CAGAGGGGAGCGGCCATA 60.844 66.667 2.24 0.00 38.95 2.74
594 607 0.755698 GTGATACGGAGCAGAGGGGA 60.756 60.000 0.00 0.00 0.00 4.81
631 654 1.303888 AGAGCGGGTAGTTGGACGA 60.304 57.895 0.00 0.00 0.00 4.20
641 664 2.980233 GCAGCAAACAGAGCGGGT 60.980 61.111 0.00 0.00 37.01 5.28
642 665 2.974489 CTGCAGCAAACAGAGCGGG 61.974 63.158 0.00 0.00 37.32 6.13
643 666 2.559840 CTGCAGCAAACAGAGCGG 59.440 61.111 0.00 0.00 37.32 5.52
644 667 2.126965 GCTGCAGCAAACAGAGCG 60.127 61.111 33.36 0.00 41.59 5.03
667 690 2.622962 GGCTTTTGGGTTCGTCGGG 61.623 63.158 0.00 0.00 0.00 5.14
765 798 0.039074 GACGGCGGAGGATAGACATG 60.039 60.000 13.24 0.00 0.00 3.21
885 918 1.341187 CGGGGGTTGGGTTTTATGCTA 60.341 52.381 0.00 0.00 0.00 3.49
1105 1184 3.069318 GAGGGAGAAGTCGGCGGT 61.069 66.667 7.21 0.00 0.00 5.68
1723 1805 2.434134 CGCAGCGGTACTTGTCGAC 61.434 63.158 9.11 9.11 0.00 4.20
1890 1978 4.666397 TAGGCGGCGTCGTTGCAA 62.666 61.111 12.58 0.00 38.89 4.08
2154 2276 3.926058 AACACTAACAACCCAGTGACT 57.074 42.857 8.61 0.00 43.99 3.41
2163 2293 6.863126 CCTCATCATTTCCAAACACTAACAAC 59.137 38.462 0.00 0.00 0.00 3.32
2173 2303 4.523943 CCACAGAACCTCATCATTTCCAAA 59.476 41.667 0.00 0.00 0.00 3.28
2211 2348 3.859443 TGCAGCAACAACTGAAATGTTT 58.141 36.364 0.00 0.00 38.90 2.83
2267 2408 4.307032 ACCTGGAGCATCAATAAACAGT 57.693 40.909 0.00 0.00 36.25 3.55
2268 2409 5.295292 CACTACCTGGAGCATCAATAAACAG 59.705 44.000 0.00 0.00 36.25 3.16
2427 2669 9.725019 GTGGAATACATAATGTGGATTAGATCA 57.275 33.333 0.00 0.00 41.56 2.92
2730 3029 6.237861 GTTAGTAAGCACTAAGCACATAGCAC 60.238 42.308 0.00 0.00 45.66 4.40
2731 3030 5.810587 GTTAGTAAGCACTAAGCACATAGCA 59.189 40.000 0.00 0.00 45.66 3.49
2732 3031 6.043411 AGTTAGTAAGCACTAAGCACATAGC 58.957 40.000 0.00 0.00 45.66 2.97
2733 3032 7.863375 CCTAGTTAGTAAGCACTAAGCACATAG 59.137 40.741 0.00 0.00 45.66 2.23
2734 3033 7.341256 ACCTAGTTAGTAAGCACTAAGCACATA 59.659 37.037 0.00 0.00 45.66 2.29
2735 3034 6.154706 ACCTAGTTAGTAAGCACTAAGCACAT 59.845 38.462 0.00 0.00 45.66 3.21
2906 3231 3.200825 AGGACCTTACTGTGCATAATGCT 59.799 43.478 0.00 0.00 45.31 3.79
2943 4068 5.379706 AAGCTTATAACTCAAGGAGCCAT 57.620 39.130 0.00 0.00 32.04 4.40
3348 4474 6.765036 TGCAGAAATGATTTGGCTTTTAACAA 59.235 30.769 11.04 0.00 0.00 2.83
3534 4660 4.500499 AGCATCTATTCTTTGAGTGCCT 57.500 40.909 0.00 0.00 0.00 4.75
4102 5228 3.646162 ACAGGTGACAATGAGACCAACTA 59.354 43.478 7.86 0.00 31.61 2.24
4402 5535 1.262950 TCACAAGTTTGCCGATGTTCG 59.737 47.619 0.00 0.00 40.07 3.95
4507 5640 5.047306 ACGAACAGAGAGTGGAAATGTATCA 60.047 40.000 0.00 0.00 0.00 2.15
4681 5839 4.913335 ATATTCAATGTTGGAGCTGCAG 57.087 40.909 10.11 10.11 0.00 4.41
4707 5867 7.276658 ACAGAGAGTATGTTTAGAAGCATTTCG 59.723 37.037 0.00 0.00 38.38 3.46
4709 5869 8.854614 AACAGAGAGTATGTTTAGAAGCATTT 57.145 30.769 0.00 0.00 37.61 2.32
4714 5874 7.536855 ACCGTAACAGAGAGTATGTTTAGAAG 58.463 38.462 0.00 0.00 41.08 2.85
4722 5882 4.111375 AGCAACCGTAACAGAGAGTATG 57.889 45.455 0.00 0.00 0.00 2.39
4741 5901 8.724229 TCAGAACATGCATGTATATATTGAAGC 58.276 33.333 31.55 4.58 40.80 3.86
4786 5948 0.168128 GCAAACACTGGCGTATGGAC 59.832 55.000 0.00 0.00 0.00 4.02
4820 5987 6.059787 AGTGCTATGAACAAGAGAAGGATT 57.940 37.500 0.00 0.00 0.00 3.01
4896 6068 7.394016 TCACTATGCATATTATCCGACCATTT 58.606 34.615 6.92 0.00 0.00 2.32
4925 6129 9.219603 TCTATGCAATATTTATGTCTAACAGCC 57.780 33.333 0.00 0.00 0.00 4.85
5032 6244 0.402121 AGGCCAACCAGAGAACCTTC 59.598 55.000 5.01 0.00 39.06 3.46
5036 6248 0.398318 AGTGAGGCCAACCAGAGAAC 59.602 55.000 5.01 0.00 39.06 3.01
5047 6259 9.784531 ATTTGCATATATATACATAGTGAGGCC 57.215 33.333 0.00 0.00 0.00 5.19
5125 6337 2.290093 GAGCTGGCACAAGCATTATCTC 59.710 50.000 0.00 0.00 44.61 2.75
5126 6350 2.295885 GAGCTGGCACAAGCATTATCT 58.704 47.619 0.00 0.00 44.61 1.98
5129 6353 0.329261 AGGAGCTGGCACAAGCATTA 59.671 50.000 0.00 0.00 44.61 1.90
5154 6380 6.042143 TGCAAACTGAATGGAAAAGAAGAAC 58.958 36.000 0.00 0.00 0.00 3.01
5167 6394 3.384146 TGTCACACCAATGCAAACTGAAT 59.616 39.130 0.00 0.00 0.00 2.57
5525 6919 4.083110 ACCTCCGTACCGAAATATACGATG 60.083 45.833 5.42 0.00 45.51 3.84
5526 6920 4.074970 ACCTCCGTACCGAAATATACGAT 58.925 43.478 5.42 0.00 45.51 3.73
5529 6923 5.948992 ACTACCTCCGTACCGAAATATAC 57.051 43.478 0.00 0.00 0.00 1.47
5532 6926 8.514594 CAAATATACTACCTCCGTACCGAAATA 58.485 37.037 0.00 0.00 0.00 1.40
5537 6931 5.335191 GGACAAATATACTACCTCCGTACCG 60.335 48.000 0.00 0.00 0.00 4.02
5616 7120 9.161629 ACCTGAAACAAAGGAAAGTAAATTTTG 57.838 29.630 0.00 0.00 38.27 2.44
5625 7131 3.826729 CCCCTACCTGAAACAAAGGAAAG 59.173 47.826 0.00 0.00 38.27 2.62
5700 7207 3.798337 CGAAATATTCAGCCATTGCCAAC 59.202 43.478 0.00 0.00 38.69 3.77
5701 7208 3.181477 CCGAAATATTCAGCCATTGCCAA 60.181 43.478 0.00 0.00 38.69 4.52
5702 7209 2.361757 CCGAAATATTCAGCCATTGCCA 59.638 45.455 0.00 0.00 38.69 4.92
5705 7212 4.898829 TCACCGAAATATTCAGCCATTG 57.101 40.909 0.00 0.00 0.00 2.82
5706 7213 5.009010 GTGATCACCGAAATATTCAGCCATT 59.991 40.000 15.31 0.00 0.00 3.16
5707 7214 4.516698 GTGATCACCGAAATATTCAGCCAT 59.483 41.667 15.31 0.00 0.00 4.40
5708 7215 3.876914 GTGATCACCGAAATATTCAGCCA 59.123 43.478 15.31 0.00 0.00 4.75
5711 7218 6.668541 AACAGTGATCACCGAAATATTCAG 57.331 37.500 22.21 1.31 0.00 3.02
5712 7219 7.447374 AAAACAGTGATCACCGAAATATTCA 57.553 32.000 22.21 0.00 0.00 2.57
5713 7220 8.879759 TCTAAAACAGTGATCACCGAAATATTC 58.120 33.333 22.21 0.00 0.00 1.75
5739 7271 6.830873 AAACCAGTACTACTAACGTCTCAT 57.169 37.500 0.00 0.00 0.00 2.90
5822 7363 5.948992 AACAAAGGTCTAACTGAAGCATC 57.051 39.130 0.00 0.00 0.00 3.91
5827 7368 7.116736 AGAGGAAAAACAAAGGTCTAACTGAA 58.883 34.615 0.00 0.00 0.00 3.02
5851 7420 6.039829 AGAGCTTAACTTTTTGTTCCCTCAAG 59.960 38.462 0.00 0.00 39.89 3.02
5912 7998 1.070821 CATGACACGCTCACGACATT 58.929 50.000 0.00 0.00 43.93 2.71
5951 8332 9.941325 ACACAAGGATAAATTTCATATTTGCAA 57.059 25.926 0.00 0.00 0.00 4.08
5952 8333 9.368674 CACACAAGGATAAATTTCATATTTGCA 57.631 29.630 0.00 0.00 0.00 4.08
5953 8334 9.369904 ACACACAAGGATAAATTTCATATTTGC 57.630 29.630 0.00 0.00 0.00 3.68
5957 8338 9.685276 TCTCACACACAAGGATAAATTTCATAT 57.315 29.630 0.00 0.00 0.00 1.78
5958 8339 9.685276 ATCTCACACACAAGGATAAATTTCATA 57.315 29.630 0.00 0.00 0.00 2.15
5959 8340 8.585471 ATCTCACACACAAGGATAAATTTCAT 57.415 30.769 0.00 0.00 0.00 2.57
5960 8341 8.408043 AATCTCACACACAAGGATAAATTTCA 57.592 30.769 0.00 0.00 0.00 2.69
5961 8342 9.696917 AAAATCTCACACACAAGGATAAATTTC 57.303 29.630 0.00 0.00 0.00 2.17
6011 8392 3.215568 TAATGCAATGGGGCCGCG 61.216 61.111 15.95 0.00 0.00 6.46
6012 8393 2.417097 GTAATGCAATGGGGCCGC 59.583 61.111 14.01 14.01 0.00 6.53
6013 8394 1.326213 TTGGTAATGCAATGGGGCCG 61.326 55.000 0.00 0.00 0.00 6.13
6015 8396 1.761784 TCATTGGTAATGCAATGGGGC 59.238 47.619 0.00 0.00 38.81 5.80
6019 8400 5.722263 TCTGGTTTCATTGGTAATGCAATG 58.278 37.500 0.00 0.00 38.77 2.82
6020 8401 5.481473 ACTCTGGTTTCATTGGTAATGCAAT 59.519 36.000 0.00 0.00 38.77 3.56
6023 8404 6.699575 ATACTCTGGTTTCATTGGTAATGC 57.300 37.500 0.00 0.00 38.77 3.56
6029 8410 8.244113 GGTTTTCTAATACTCTGGTTTCATTGG 58.756 37.037 0.00 0.00 0.00 3.16
6031 8412 8.934023 TGGTTTTCTAATACTCTGGTTTCATT 57.066 30.769 0.00 0.00 0.00 2.57
6032 8413 9.178758 GATGGTTTTCTAATACTCTGGTTTCAT 57.821 33.333 0.00 0.00 0.00 2.57
6033 8414 8.383175 AGATGGTTTTCTAATACTCTGGTTTCA 58.617 33.333 0.00 0.00 0.00 2.69
6034 8415 8.794335 AGATGGTTTTCTAATACTCTGGTTTC 57.206 34.615 0.00 0.00 0.00 2.78
6046 8427 8.723311 CACGGTTTGTAATAGATGGTTTTCTAA 58.277 33.333 0.00 0.00 32.20 2.10
6047 8428 8.095792 TCACGGTTTGTAATAGATGGTTTTCTA 58.904 33.333 0.00 0.00 32.94 2.10
6048 8429 6.938030 TCACGGTTTGTAATAGATGGTTTTCT 59.062 34.615 0.00 0.00 0.00 2.52
6049 8430 7.136289 TCACGGTTTGTAATAGATGGTTTTC 57.864 36.000 0.00 0.00 0.00 2.29
6050 8431 7.308951 CCTTCACGGTTTGTAATAGATGGTTTT 60.309 37.037 0.00 0.00 0.00 2.43
6052 8433 5.646360 CCTTCACGGTTTGTAATAGATGGTT 59.354 40.000 0.00 0.00 0.00 3.67
6053 8434 5.183228 CCTTCACGGTTTGTAATAGATGGT 58.817 41.667 0.00 0.00 0.00 3.55
6054 8435 4.035208 GCCTTCACGGTTTGTAATAGATGG 59.965 45.833 0.00 0.00 34.25 3.51
6055 8436 4.876107 AGCCTTCACGGTTTGTAATAGATG 59.124 41.667 0.00 0.00 34.25 2.90
6056 8437 5.099042 AGCCTTCACGGTTTGTAATAGAT 57.901 39.130 0.00 0.00 34.25 1.98
6060 8441 4.546829 TCTAGCCTTCACGGTTTGTAAT 57.453 40.909 0.00 0.00 34.25 1.89
6061 8442 4.312443 CTTCTAGCCTTCACGGTTTGTAA 58.688 43.478 0.00 0.00 34.25 2.41
6063 8444 2.767505 CTTCTAGCCTTCACGGTTTGT 58.232 47.619 0.00 0.00 34.25 2.83
6065 8446 1.071699 TGCTTCTAGCCTTCACGGTTT 59.928 47.619 0.00 0.00 41.51 3.27
6066 8447 0.685097 TGCTTCTAGCCTTCACGGTT 59.315 50.000 0.00 0.00 41.51 4.44
6067 8448 0.247736 CTGCTTCTAGCCTTCACGGT 59.752 55.000 0.00 0.00 41.51 4.83
6069 8450 2.164624 AGTACTGCTTCTAGCCTTCACG 59.835 50.000 0.00 0.00 41.51 4.35
6070 8451 3.516615 CAGTACTGCTTCTAGCCTTCAC 58.483 50.000 10.54 0.00 41.51 3.18
6071 8452 3.876274 CAGTACTGCTTCTAGCCTTCA 57.124 47.619 10.54 0.00 41.51 3.02
6091 8472 1.609208 TTTTCAGTCTCTGCCAAGGC 58.391 50.000 3.61 3.61 42.35 4.35
6113 8526 4.012895 GGTGTGCTGCGAACGGTG 62.013 66.667 0.00 0.00 0.00 4.94
6116 8529 0.317770 ATTTTGGTGTGCTGCGAACG 60.318 50.000 0.00 0.00 0.00 3.95
6146 8559 4.034510 CGCACAACTTCTTGGATATTCCTC 59.965 45.833 0.00 0.00 37.46 3.71
6150 8563 4.072131 ACACGCACAACTTCTTGGATATT 58.928 39.130 0.00 0.00 0.00 1.28
6161 8574 1.788258 CTCATCTCACACGCACAACT 58.212 50.000 0.00 0.00 0.00 3.16
6165 8578 0.441533 CAAGCTCATCTCACACGCAC 59.558 55.000 0.00 0.00 0.00 5.34
6168 8581 1.800805 AACCAAGCTCATCTCACACG 58.199 50.000 0.00 0.00 0.00 4.49
6172 8585 4.019411 TCCACAATAACCAAGCTCATCTCA 60.019 41.667 0.00 0.00 0.00 3.27
6231 8644 4.771577 TGAAGGCATATTTCCAAAAGCTCA 59.228 37.500 0.00 0.00 0.00 4.26
6248 8661 0.322816 TGGTGGAAGATGCTGAAGGC 60.323 55.000 0.00 0.00 42.22 4.35
6249 8662 2.426024 CAATGGTGGAAGATGCTGAAGG 59.574 50.000 0.00 0.00 0.00 3.46
6251 8664 3.245016 ACTCAATGGTGGAAGATGCTGAA 60.245 43.478 0.00 0.00 0.00 3.02
6252 8665 2.306805 ACTCAATGGTGGAAGATGCTGA 59.693 45.455 0.00 0.00 0.00 4.26
6253 8666 2.719739 ACTCAATGGTGGAAGATGCTG 58.280 47.619 0.00 0.00 0.00 4.41
6254 8667 3.446442 AACTCAATGGTGGAAGATGCT 57.554 42.857 0.00 0.00 0.00 3.79
6257 8670 6.294176 CGAAAGAAAACTCAATGGTGGAAGAT 60.294 38.462 0.00 0.00 0.00 2.40
6259 8672 5.215160 CGAAAGAAAACTCAATGGTGGAAG 58.785 41.667 0.00 0.00 0.00 3.46
6260 8673 4.642885 ACGAAAGAAAACTCAATGGTGGAA 59.357 37.500 0.00 0.00 0.00 3.53
6261 8674 4.204012 ACGAAAGAAAACTCAATGGTGGA 58.796 39.130 0.00 0.00 0.00 4.02
6262 8675 4.275936 AGACGAAAGAAAACTCAATGGTGG 59.724 41.667 0.00 0.00 0.00 4.61
6264 8677 6.451064 AAAGACGAAAGAAAACTCAATGGT 57.549 33.333 0.00 0.00 0.00 3.55
6266 8679 8.835467 TGTAAAAGACGAAAGAAAACTCAATG 57.165 30.769 0.00 0.00 0.00 2.82
6268 8681 8.036273 ACTGTAAAAGACGAAAGAAAACTCAA 57.964 30.769 0.00 0.00 0.00 3.02
6269 8682 7.605410 ACTGTAAAAGACGAAAGAAAACTCA 57.395 32.000 0.00 0.00 0.00 3.41
6270 8683 8.598075 TGTACTGTAAAAGACGAAAGAAAACTC 58.402 33.333 0.00 0.00 0.00 3.01
6276 8689 9.153721 TCTTTTTGTACTGTAAAAGACGAAAGA 57.846 29.630 18.59 10.34 42.38 2.52
6279 8692 7.765360 TCCTCTTTTTGTACTGTAAAAGACGAA 59.235 33.333 18.59 10.05 42.38 3.85
6280 8693 7.267128 TCCTCTTTTTGTACTGTAAAAGACGA 58.733 34.615 18.59 17.36 42.38 4.20
6281 8694 7.473027 TCCTCTTTTTGTACTGTAAAAGACG 57.527 36.000 18.59 16.13 42.38 4.18
6284 8697 7.912383 TCGTTCCTCTTTTTGTACTGTAAAAG 58.088 34.615 15.93 15.93 40.83 2.27
6285 8698 7.011669 CCTCGTTCCTCTTTTTGTACTGTAAAA 59.988 37.037 0.00 0.00 0.00 1.52
6287 8700 5.987347 CCTCGTTCCTCTTTTTGTACTGTAA 59.013 40.000 0.00 0.00 0.00 2.41
6288 8701 5.302568 TCCTCGTTCCTCTTTTTGTACTGTA 59.697 40.000 0.00 0.00 0.00 2.74
6289 8702 4.100498 TCCTCGTTCCTCTTTTTGTACTGT 59.900 41.667 0.00 0.00 0.00 3.55
6291 8704 4.100498 TGTCCTCGTTCCTCTTTTTGTACT 59.900 41.667 0.00 0.00 0.00 2.73
6292 8705 4.374399 TGTCCTCGTTCCTCTTTTTGTAC 58.626 43.478 0.00 0.00 0.00 2.90
6293 8706 4.675976 TGTCCTCGTTCCTCTTTTTGTA 57.324 40.909 0.00 0.00 0.00 2.41
6294 8707 3.553828 TGTCCTCGTTCCTCTTTTTGT 57.446 42.857 0.00 0.00 0.00 2.83
6296 8709 2.814336 GCATGTCCTCGTTCCTCTTTTT 59.186 45.455 0.00 0.00 0.00 1.94
6297 8710 2.039084 AGCATGTCCTCGTTCCTCTTTT 59.961 45.455 0.00 0.00 0.00 2.27
6298 8711 1.625818 AGCATGTCCTCGTTCCTCTTT 59.374 47.619 0.00 0.00 0.00 2.52
6299 8712 1.270907 AGCATGTCCTCGTTCCTCTT 58.729 50.000 0.00 0.00 0.00 2.85
6300 8713 1.205893 GAAGCATGTCCTCGTTCCTCT 59.794 52.381 0.00 0.00 0.00 3.69
6301 8714 1.066858 TGAAGCATGTCCTCGTTCCTC 60.067 52.381 0.00 0.00 0.00 3.71
6302 8715 0.976641 TGAAGCATGTCCTCGTTCCT 59.023 50.000 0.00 0.00 0.00 3.36
6303 8716 1.936547 GATGAAGCATGTCCTCGTTCC 59.063 52.381 0.00 0.00 0.00 3.62
6304 8717 1.590238 CGATGAAGCATGTCCTCGTTC 59.410 52.381 0.00 0.00 32.87 3.95
6305 8718 1.204704 TCGATGAAGCATGTCCTCGTT 59.795 47.619 9.64 0.00 37.09 3.85
6308 8721 2.299993 TGTCGATGAAGCATGTCCTC 57.700 50.000 0.00 0.00 0.00 3.71
6309 8722 2.996249 ATGTCGATGAAGCATGTCCT 57.004 45.000 0.00 0.00 0.00 3.85
6310 8723 3.242870 GGAAATGTCGATGAAGCATGTCC 60.243 47.826 6.45 6.45 39.12 4.02
6311 8724 3.624861 AGGAAATGTCGATGAAGCATGTC 59.375 43.478 0.00 0.00 0.00 3.06
6312 8725 3.614092 AGGAAATGTCGATGAAGCATGT 58.386 40.909 0.00 0.00 0.00 3.21
6314 8727 5.635280 CGTATAGGAAATGTCGATGAAGCAT 59.365 40.000 0.00 0.00 0.00 3.79
6315 8728 4.982295 CGTATAGGAAATGTCGATGAAGCA 59.018 41.667 0.00 0.00 0.00 3.91
6316 8729 4.386049 CCGTATAGGAAATGTCGATGAAGC 59.614 45.833 0.00 0.00 45.00 3.86
6317 8730 4.386049 GCCGTATAGGAAATGTCGATGAAG 59.614 45.833 0.00 0.00 45.00 3.02
6318 8731 4.304110 GCCGTATAGGAAATGTCGATGAA 58.696 43.478 0.00 0.00 45.00 2.57
6320 8733 2.661675 CGCCGTATAGGAAATGTCGATG 59.338 50.000 0.00 0.00 45.00 3.84
6321 8734 2.925306 GCGCCGTATAGGAAATGTCGAT 60.925 50.000 0.00 0.00 45.00 3.59
6322 8735 1.601162 GCGCCGTATAGGAAATGTCGA 60.601 52.381 0.00 0.00 45.00 4.20
6324 8737 1.145803 GGCGCCGTATAGGAAATGTC 58.854 55.000 12.58 0.00 45.00 3.06
6325 8738 0.250166 GGGCGCCGTATAGGAAATGT 60.250 55.000 22.54 0.00 45.00 2.71
6326 8739 1.289109 CGGGCGCCGTATAGGAAATG 61.289 60.000 22.54 0.00 45.00 2.32
6327 8740 1.005394 CGGGCGCCGTATAGGAAAT 60.005 57.895 22.54 0.00 45.00 2.17
6342 8755 2.125673 CTACAACGGAGCCACGGG 60.126 66.667 2.64 0.00 38.39 5.28
6344 8757 2.125673 CCCTACAACGGAGCCACG 60.126 66.667 0.00 0.00 40.31 4.94
6345 8758 0.609662 TAACCCTACAACGGAGCCAC 59.390 55.000 0.00 0.00 0.00 5.01
6346 8759 1.002315 GTTAACCCTACAACGGAGCCA 59.998 52.381 0.00 0.00 0.00 4.75
6347 8760 1.730501 GTTAACCCTACAACGGAGCC 58.269 55.000 0.00 0.00 0.00 4.70
6348 8761 1.353076 CGTTAACCCTACAACGGAGC 58.647 55.000 0.00 0.00 42.82 4.70
6352 8765 0.320596 TGCCCGTTAACCCTACAACG 60.321 55.000 0.00 0.13 45.36 4.10
6353 8766 1.159285 GTGCCCGTTAACCCTACAAC 58.841 55.000 0.00 0.00 0.00 3.32
6354 8767 0.763652 TGTGCCCGTTAACCCTACAA 59.236 50.000 0.00 0.00 0.00 2.41
6355 8768 0.035176 GTGTGCCCGTTAACCCTACA 59.965 55.000 0.00 0.00 0.00 2.74
6356 8769 0.035176 TGTGTGCCCGTTAACCCTAC 59.965 55.000 0.00 0.00 0.00 3.18
6357 8770 0.035176 GTGTGTGCCCGTTAACCCTA 59.965 55.000 0.00 0.00 0.00 3.53
6358 8771 1.228033 GTGTGTGCCCGTTAACCCT 60.228 57.895 0.00 0.00 0.00 4.34
6360 8773 1.650363 GTGTGTGTGCCCGTTAACC 59.350 57.895 0.00 0.00 0.00 2.85
6361 8774 1.650363 GGTGTGTGTGCCCGTTAAC 59.350 57.895 0.00 0.00 0.00 2.01
6362 8775 1.526455 GGGTGTGTGTGCCCGTTAA 60.526 57.895 0.00 0.00 34.90 2.01
6363 8776 2.111460 GGGTGTGTGTGCCCGTTA 59.889 61.111 0.00 0.00 34.90 3.18
6367 8780 1.600916 GAGAAGGGTGTGTGTGCCC 60.601 63.158 0.00 0.00 45.16 5.36
6368 8781 0.603975 GAGAGAAGGGTGTGTGTGCC 60.604 60.000 0.00 0.00 0.00 5.01
6369 8782 0.603975 GGAGAGAAGGGTGTGTGTGC 60.604 60.000 0.00 0.00 0.00 4.57
6371 8784 2.050269 CGGAGAGAAGGGTGTGTGT 58.950 57.895 0.00 0.00 0.00 3.72
6372 8785 1.374758 GCGGAGAGAAGGGTGTGTG 60.375 63.158 0.00 0.00 0.00 3.82
6373 8786 1.534235 AGCGGAGAGAAGGGTGTGT 60.534 57.895 0.00 0.00 0.00 3.72
6377 8790 1.985116 GTCCAGCGGAGAGAAGGGT 60.985 63.158 0.00 0.00 29.39 4.34
6378 8791 2.726351 GGTCCAGCGGAGAGAAGGG 61.726 68.421 0.00 0.00 29.39 3.95
6379 8792 1.544825 TTGGTCCAGCGGAGAGAAGG 61.545 60.000 0.00 0.00 29.39 3.46
6380 8793 0.390472 GTTGGTCCAGCGGAGAGAAG 60.390 60.000 0.00 0.00 29.39 2.85
6382 8795 2.283529 GGTTGGTCCAGCGGAGAGA 61.284 63.158 0.00 0.00 35.97 3.10
6383 8796 2.266055 GGTTGGTCCAGCGGAGAG 59.734 66.667 0.00 0.00 35.97 3.20
6384 8797 3.319198 GGGTTGGTCCAGCGGAGA 61.319 66.667 0.00 0.00 38.11 3.71
6385 8798 3.636231 TGGGTTGGTCCAGCGGAG 61.636 66.667 0.00 0.00 38.11 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.