Multiple sequence alignment - TraesCS3D01G101300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G101300 chr3D 100.000 2943 0 0 1 2943 54392992 54395934 0.000000e+00 5435.0
1 TraesCS3D01G101300 chr3D 95.768 898 24 6 772 1659 54458476 54457583 0.000000e+00 1435.0
2 TraesCS3D01G101300 chr3D 88.294 299 28 3 1926 2218 549642237 549642534 4.670000e-93 351.0
3 TraesCS3D01G101300 chr3D 90.355 197 17 2 2275 2469 501061604 501061800 1.050000e-64 257.0
4 TraesCS3D01G101300 chr3B 93.492 1306 63 6 385 1672 84762807 84764108 0.000000e+00 1921.0
5 TraesCS3D01G101300 chr3B 91.983 923 48 9 756 1659 84876418 84875503 0.000000e+00 1271.0
6 TraesCS3D01G101300 chr3B 89.600 500 42 5 1972 2469 461748324 461747833 6.920000e-176 627.0
7 TraesCS3D01G101300 chr3B 95.480 354 16 0 2 355 84762324 84762677 1.530000e-157 566.0
8 TraesCS3D01G101300 chr3B 90.062 322 18 7 2636 2943 84779867 84780188 3.530000e-109 405.0
9 TraesCS3D01G101300 chr3B 88.476 269 20 7 219 480 97755886 97756150 6.120000e-82 315.0
10 TraesCS3D01G101300 chr3B 86.296 270 27 6 215 479 519860652 519860916 4.800000e-73 285.0
11 TraesCS3D01G101300 chr3B 92.386 197 13 2 2275 2469 662527250 662527446 2.230000e-71 279.0
12 TraesCS3D01G101300 chr3B 88.479 217 23 2 2255 2469 347925136 347924920 8.090000e-66 261.0
13 TraesCS3D01G101300 chr3A 95.264 908 35 4 752 1659 65402606 65401707 0.000000e+00 1432.0
14 TraesCS3D01G101300 chr3A 92.916 847 35 9 1091 1929 65360850 65361679 0.000000e+00 1208.0
15 TraesCS3D01G101300 chr3A 92.763 304 13 4 578 872 65360342 65360645 5.830000e-117 431.0
16 TraesCS3D01G101300 chr3A 90.763 249 16 4 2636 2877 65362253 65362501 2.830000e-85 326.0
17 TraesCS3D01G101300 chr3A 87.732 269 22 8 219 480 69662536 69662800 1.330000e-78 303.0
18 TraesCS3D01G101300 chr3A 95.722 187 8 0 856 1042 65360666 65360852 4.770000e-78 302.0
19 TraesCS3D01G101300 chr3A 86.296 270 28 4 214 478 475281055 475281320 4.800000e-73 285.0
20 TraesCS3D01G101300 chr3A 91.327 196 13 3 29 222 65359811 65360004 6.250000e-67 265.0
21 TraesCS3D01G101300 chr3A 91.237 194 15 2 2278 2469 640364050 640363857 2.250000e-66 263.0
22 TraesCS3D01G101300 chr3A 86.784 227 25 1 253 474 137577310 137577084 6.300000e-62 248.0
23 TraesCS3D01G101300 chr3A 85.000 180 27 0 2469 2648 65361677 65361856 1.800000e-42 183.0
24 TraesCS3D01G101300 chr3A 92.174 115 8 1 471 585 65359999 65360112 8.440000e-36 161.0
25 TraesCS3D01G101300 chr5D 91.875 320 25 1 2151 2469 47629644 47629325 2.080000e-121 446.0
26 TraesCS3D01G101300 chr5D 86.692 263 31 3 219 477 334934580 334934318 3.710000e-74 289.0
27 TraesCS3D01G101300 chr1D 90.402 323 30 1 2148 2469 489788380 489788058 9.750000e-115 424.0
28 TraesCS3D01G101300 chr5A 84.615 377 40 11 2083 2457 532562071 532561711 2.790000e-95 359.0
29 TraesCS3D01G101300 chr7B 88.302 265 15 6 219 474 162141026 162141283 1.330000e-78 303.0
30 TraesCS3D01G101300 chr6B 87.023 262 29 1 218 474 162269297 162269558 1.030000e-74 291.0
31 TraesCS3D01G101300 chr1A 86.567 268 26 7 215 474 434422674 434422939 1.330000e-73 287.0
32 TraesCS3D01G101300 chr1B 90.323 217 19 2 2255 2469 530664200 530664416 1.730000e-72 283.0
33 TraesCS3D01G101300 chr2A 96.078 51 2 0 219 269 707110476 707110526 1.880000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G101300 chr3D 54392992 54395934 2942 False 5435.000000 5435 100.000000 1 2943 1 chr3D.!!$F1 2942
1 TraesCS3D01G101300 chr3D 54457583 54458476 893 True 1435.000000 1435 95.768000 772 1659 1 chr3D.!!$R1 887
2 TraesCS3D01G101300 chr3B 84875503 84876418 915 True 1271.000000 1271 91.983000 756 1659 1 chr3B.!!$R1 903
3 TraesCS3D01G101300 chr3B 84762324 84764108 1784 False 1243.500000 1921 94.486000 2 1672 2 chr3B.!!$F5 1670
4 TraesCS3D01G101300 chr3A 65401707 65402606 899 True 1432.000000 1432 95.264000 752 1659 1 chr3A.!!$R1 907
5 TraesCS3D01G101300 chr3A 65359811 65362501 2690 False 410.857143 1208 91.523571 29 2877 7 chr3A.!!$F3 2848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 144 1.537562 GCATGCTACGTACCCCACTAC 60.538 57.143 11.37 0.0 0.0 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 2520 0.035458 GGGGGCATCTGGATAAGACG 59.965 60.0 0.0 0.0 37.88 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.859205 AAATGGAAGATTGCATTACCCTC 57.141 39.130 11.95 0.00 46.46 4.30
33 34 1.604278 GGAAGATTGCATTACCCTCGC 59.396 52.381 0.00 0.00 0.00 5.03
64 67 2.094649 TGCCATGTGTGCATACAACATG 60.095 45.455 20.65 20.02 41.15 3.21
141 144 1.537562 GCATGCTACGTACCCCACTAC 60.538 57.143 11.37 0.00 0.00 2.73
166 169 6.446318 GCATGAAATCAAACAAACAGTAGGA 58.554 36.000 0.00 0.00 0.00 2.94
200 203 3.123273 ACTGCCACCTAAACTGGGATAT 58.877 45.455 0.00 0.00 0.00 1.63
201 204 3.527665 ACTGCCACCTAAACTGGGATATT 59.472 43.478 0.00 0.00 0.00 1.28
238 241 5.215252 AGTACTCCATCCGTTCCATAATG 57.785 43.478 0.00 0.00 0.00 1.90
483 591 6.043938 TGGAACAGAGGGAGTACTATTTTGTT 59.956 38.462 0.00 3.78 0.00 2.83
516 624 7.843490 TTAAGATCGAAGGACTATTTTGTGG 57.157 36.000 0.00 0.00 0.00 4.17
529 637 7.094377 GGACTATTTTGTGGCAGTTCATCTAAA 60.094 37.037 0.00 0.00 0.00 1.85
540 648 8.359642 TGGCAGTTCATCTAAATTATATTTGCC 58.640 33.333 0.00 0.00 43.72 4.52
696 1045 3.867857 TGTTCGATTTGCCTACATGCTA 58.132 40.909 0.00 0.00 0.00 3.49
703 1052 5.466728 CGATTTGCCTACATGCTATGTACTT 59.533 40.000 0.00 0.00 44.38 2.24
712 1061 5.918608 ACATGCTATGTACTTAGGTCCTTG 58.081 41.667 15.45 10.24 42.78 3.61
898 1300 4.559502 CGACAATCTGAGAGACAAACTGGA 60.560 45.833 0.00 0.00 0.00 3.86
950 1359 2.125713 TACATGGCCGCACGTCTG 60.126 61.111 0.00 0.00 0.00 3.51
1609 2039 4.409218 GTCGTGTACGCCGCCAGA 62.409 66.667 0.00 0.00 39.60 3.86
1741 2171 9.577110 TCATAGCTCAATTTCATCATTTCAAAC 57.423 29.630 0.00 0.00 0.00 2.93
1745 2175 8.092068 AGCTCAATTTCATCATTTCAAACATGA 58.908 29.630 0.00 0.00 35.12 3.07
1759 2189 6.951062 TCAAACATGAAGTTGATAACCACA 57.049 33.333 0.00 0.00 41.19 4.17
1765 2195 6.374333 ACATGAAGTTGATAACCACACATACC 59.626 38.462 0.00 0.00 0.00 2.73
1788 2218 7.251704 CCATGTGGTTACTGATGATTAACTC 57.748 40.000 0.00 0.00 0.00 3.01
1794 2224 7.546667 GTGGTTACTGATGATTAACTCCGTTAA 59.453 37.037 2.12 2.12 41.32 2.01
1808 2238 3.832276 TCCGTTAATTTGAAGTGCATGC 58.168 40.909 11.82 11.82 0.00 4.06
1850 2281 2.712057 GCAAAGCTTATATGCGCCAT 57.288 45.000 4.18 0.00 38.13 4.40
1870 2301 2.356194 GCGGCTGCTTTGGGTTTG 60.356 61.111 11.21 0.00 38.39 2.93
1871 2302 2.855514 GCGGCTGCTTTGGGTTTGA 61.856 57.895 11.21 0.00 38.39 2.69
1889 2320 5.873164 GGTTTGAGACCGTGTATATTCTGTT 59.127 40.000 0.00 0.00 39.00 3.16
1967 2405 2.755650 AGCGATTATTGCTTCTACCCG 58.244 47.619 0.22 0.00 40.48 5.28
1968 2406 1.194772 GCGATTATTGCTTCTACCCGC 59.805 52.381 0.00 0.00 0.00 6.13
1969 2407 2.755650 CGATTATTGCTTCTACCCGCT 58.244 47.619 0.00 0.00 0.00 5.52
1970 2408 2.731976 CGATTATTGCTTCTACCCGCTC 59.268 50.000 0.00 0.00 0.00 5.03
1971 2409 2.218953 TTATTGCTTCTACCCGCTCG 57.781 50.000 0.00 0.00 0.00 5.03
1972 2410 0.249322 TATTGCTTCTACCCGCTCGC 60.249 55.000 0.00 0.00 0.00 5.03
1973 2411 1.961180 ATTGCTTCTACCCGCTCGCT 61.961 55.000 0.00 0.00 0.00 4.93
1974 2412 2.278923 GCTTCTACCCGCTCGCTC 60.279 66.667 0.00 0.00 0.00 5.03
1975 2413 3.064987 GCTTCTACCCGCTCGCTCA 62.065 63.158 0.00 0.00 0.00 4.26
1976 2414 1.226717 CTTCTACCCGCTCGCTCAC 60.227 63.158 0.00 0.00 0.00 3.51
1977 2415 2.615262 CTTCTACCCGCTCGCTCACC 62.615 65.000 0.00 0.00 0.00 4.02
1978 2416 4.554363 CTACCCGCTCGCTCACCG 62.554 72.222 0.00 0.00 38.61 4.94
1984 2422 4.400109 GCTCGCTCACCGTCGTCA 62.400 66.667 0.00 0.00 38.35 4.35
1985 2423 2.485582 CTCGCTCACCGTCGTCAT 59.514 61.111 0.00 0.00 38.35 3.06
1986 2424 1.869574 CTCGCTCACCGTCGTCATG 60.870 63.158 0.00 0.00 38.35 3.07
1987 2425 3.545481 CGCTCACCGTCGTCATGC 61.545 66.667 0.00 0.00 0.00 4.06
1988 2426 2.125912 GCTCACCGTCGTCATGCT 60.126 61.111 0.00 0.00 0.00 3.79
1989 2427 1.738099 GCTCACCGTCGTCATGCTT 60.738 57.895 0.00 0.00 0.00 3.91
1990 2428 1.291877 GCTCACCGTCGTCATGCTTT 61.292 55.000 0.00 0.00 0.00 3.51
1991 2429 1.148310 CTCACCGTCGTCATGCTTTT 58.852 50.000 0.00 0.00 0.00 2.27
1992 2430 0.865111 TCACCGTCGTCATGCTTTTG 59.135 50.000 0.00 0.00 0.00 2.44
2022 2460 4.658063 CCCCCTGTGTTTTCAGTAATACA 58.342 43.478 0.00 0.00 34.02 2.29
2023 2461 4.457949 CCCCCTGTGTTTTCAGTAATACAC 59.542 45.833 0.00 0.00 43.66 2.90
2024 2462 4.457949 CCCCTGTGTTTTCAGTAATACACC 59.542 45.833 8.63 0.00 43.10 4.16
2025 2463 4.457949 CCCTGTGTTTTCAGTAATACACCC 59.542 45.833 8.63 0.00 43.10 4.61
2026 2464 4.457949 CCTGTGTTTTCAGTAATACACCCC 59.542 45.833 8.63 0.00 43.10 4.95
2027 2465 4.066490 TGTGTTTTCAGTAATACACCCCG 58.934 43.478 8.63 0.00 43.10 5.73
2028 2466 3.075884 TGTTTTCAGTAATACACCCCGC 58.924 45.455 0.00 0.00 0.00 6.13
2029 2467 3.075884 GTTTTCAGTAATACACCCCGCA 58.924 45.455 0.00 0.00 0.00 5.69
2030 2468 3.420300 TTTCAGTAATACACCCCGCAA 57.580 42.857 0.00 0.00 0.00 4.85
2031 2469 3.637911 TTCAGTAATACACCCCGCAAT 57.362 42.857 0.00 0.00 0.00 3.56
2032 2470 3.188159 TCAGTAATACACCCCGCAATC 57.812 47.619 0.00 0.00 0.00 2.67
2033 2471 2.158871 TCAGTAATACACCCCGCAATCC 60.159 50.000 0.00 0.00 0.00 3.01
2034 2472 1.142262 AGTAATACACCCCGCAATCCC 59.858 52.381 0.00 0.00 0.00 3.85
2035 2473 1.142262 GTAATACACCCCGCAATCCCT 59.858 52.381 0.00 0.00 0.00 4.20
2036 2474 0.182775 AATACACCCCGCAATCCCTC 59.817 55.000 0.00 0.00 0.00 4.30
2037 2475 0.694444 ATACACCCCGCAATCCCTCT 60.694 55.000 0.00 0.00 0.00 3.69
2038 2476 0.912487 TACACCCCGCAATCCCTCTT 60.912 55.000 0.00 0.00 0.00 2.85
2039 2477 1.452108 CACCCCGCAATCCCTCTTC 60.452 63.158 0.00 0.00 0.00 2.87
2040 2478 1.616628 ACCCCGCAATCCCTCTTCT 60.617 57.895 0.00 0.00 0.00 2.85
2041 2479 0.326238 ACCCCGCAATCCCTCTTCTA 60.326 55.000 0.00 0.00 0.00 2.10
2042 2480 0.106894 CCCCGCAATCCCTCTTCTAC 59.893 60.000 0.00 0.00 0.00 2.59
2043 2481 0.830648 CCCGCAATCCCTCTTCTACA 59.169 55.000 0.00 0.00 0.00 2.74
2044 2482 1.417890 CCCGCAATCCCTCTTCTACAT 59.582 52.381 0.00 0.00 0.00 2.29
2045 2483 2.487934 CCGCAATCCCTCTTCTACATG 58.512 52.381 0.00 0.00 0.00 3.21
2046 2484 2.158900 CCGCAATCCCTCTTCTACATGT 60.159 50.000 2.69 2.69 0.00 3.21
2047 2485 2.868583 CGCAATCCCTCTTCTACATGTG 59.131 50.000 9.11 0.00 0.00 3.21
2048 2486 3.679917 CGCAATCCCTCTTCTACATGTGT 60.680 47.826 9.11 0.00 0.00 3.72
2049 2487 4.441495 CGCAATCCCTCTTCTACATGTGTA 60.441 45.833 9.11 0.00 0.00 2.90
2050 2488 5.428253 GCAATCCCTCTTCTACATGTGTAA 58.572 41.667 9.11 1.44 0.00 2.41
2051 2489 5.880332 GCAATCCCTCTTCTACATGTGTAAA 59.120 40.000 9.11 0.00 0.00 2.01
2052 2490 6.374333 GCAATCCCTCTTCTACATGTGTAAAA 59.626 38.462 9.11 0.00 0.00 1.52
2053 2491 7.094377 GCAATCCCTCTTCTACATGTGTAAAAA 60.094 37.037 9.11 0.00 0.00 1.94
2054 2492 7.923414 ATCCCTCTTCTACATGTGTAAAAAC 57.077 36.000 9.11 0.00 0.00 2.43
2055 2493 5.929992 TCCCTCTTCTACATGTGTAAAAACG 59.070 40.000 9.11 0.00 0.00 3.60
2056 2494 5.121768 CCCTCTTCTACATGTGTAAAAACGG 59.878 44.000 9.11 0.00 0.00 4.44
2057 2495 5.699458 CCTCTTCTACATGTGTAAAAACGGT 59.301 40.000 9.11 0.00 0.00 4.83
2058 2496 6.204108 CCTCTTCTACATGTGTAAAAACGGTT 59.796 38.462 9.11 0.00 0.00 4.44
2059 2497 7.181143 TCTTCTACATGTGTAAAAACGGTTC 57.819 36.000 9.11 0.00 0.00 3.62
2060 2498 5.579384 TCTACATGTGTAAAAACGGTTCG 57.421 39.130 9.11 0.00 0.00 3.95
2061 2499 2.989641 ACATGTGTAAAAACGGTTCGC 58.010 42.857 0.00 0.00 0.00 4.70
2062 2500 2.614983 ACATGTGTAAAAACGGTTCGCT 59.385 40.909 0.00 0.00 0.00 4.93
2063 2501 3.065648 ACATGTGTAAAAACGGTTCGCTT 59.934 39.130 0.00 0.00 0.00 4.68
2064 2502 3.761311 TGTGTAAAAACGGTTCGCTTT 57.239 38.095 0.00 0.00 0.00 3.51
2065 2503 3.682921 TGTGTAAAAACGGTTCGCTTTC 58.317 40.909 0.00 0.00 0.00 2.62
2066 2504 3.374678 TGTGTAAAAACGGTTCGCTTTCT 59.625 39.130 0.00 0.00 0.00 2.52
2067 2505 4.569966 TGTGTAAAAACGGTTCGCTTTCTA 59.430 37.500 0.00 0.00 0.00 2.10
2068 2506 4.900182 GTGTAAAAACGGTTCGCTTTCTAC 59.100 41.667 0.00 0.00 0.00 2.59
2069 2507 4.569966 TGTAAAAACGGTTCGCTTTCTACA 59.430 37.500 0.00 0.00 0.00 2.74
2070 2508 4.619437 AAAAACGGTTCGCTTTCTACAA 57.381 36.364 0.00 0.00 0.00 2.41
2071 2509 4.619437 AAAACGGTTCGCTTTCTACAAA 57.381 36.364 0.00 0.00 0.00 2.83
2072 2510 3.597377 AACGGTTCGCTTTCTACAAAC 57.403 42.857 0.00 0.00 0.00 2.93
2073 2511 2.553086 ACGGTTCGCTTTCTACAAACA 58.447 42.857 0.00 0.00 0.00 2.83
2074 2512 2.937799 ACGGTTCGCTTTCTACAAACAA 59.062 40.909 0.00 0.00 0.00 2.83
2075 2513 3.001939 ACGGTTCGCTTTCTACAAACAAG 59.998 43.478 0.00 0.00 0.00 3.16
2076 2514 3.297472 GGTTCGCTTTCTACAAACAAGC 58.703 45.455 0.00 0.00 39.70 4.01
2077 2515 3.297472 GTTCGCTTTCTACAAACAAGCC 58.703 45.455 0.00 0.00 39.91 4.35
2078 2516 1.877443 TCGCTTTCTACAAACAAGCCC 59.123 47.619 0.00 0.00 39.91 5.19
2079 2517 1.068541 CGCTTTCTACAAACAAGCCCC 60.069 52.381 0.00 0.00 39.91 5.80
2080 2518 2.239400 GCTTTCTACAAACAAGCCCCT 58.761 47.619 0.00 0.00 37.54 4.79
2081 2519 3.418047 GCTTTCTACAAACAAGCCCCTA 58.582 45.455 0.00 0.00 37.54 3.53
2082 2520 3.190744 GCTTTCTACAAACAAGCCCCTAC 59.809 47.826 0.00 0.00 37.54 3.18
2083 2521 2.754946 TCTACAAACAAGCCCCTACG 57.245 50.000 0.00 0.00 0.00 3.51
2084 2522 1.972795 TCTACAAACAAGCCCCTACGT 59.027 47.619 0.00 0.00 0.00 3.57
2085 2523 2.028748 TCTACAAACAAGCCCCTACGTC 60.029 50.000 0.00 0.00 0.00 4.34
2086 2524 0.763035 ACAAACAAGCCCCTACGTCT 59.237 50.000 0.00 0.00 0.00 4.18
2087 2525 1.142262 ACAAACAAGCCCCTACGTCTT 59.858 47.619 0.00 0.00 0.00 3.01
2088 2526 2.369532 ACAAACAAGCCCCTACGTCTTA 59.630 45.455 0.00 0.00 0.00 2.10
2089 2527 3.008704 ACAAACAAGCCCCTACGTCTTAT 59.991 43.478 0.00 0.00 0.00 1.73
2090 2528 3.538634 AACAAGCCCCTACGTCTTATC 57.461 47.619 0.00 0.00 0.00 1.75
2091 2529 1.761198 ACAAGCCCCTACGTCTTATCC 59.239 52.381 0.00 0.00 0.00 2.59
2092 2530 1.760613 CAAGCCCCTACGTCTTATCCA 59.239 52.381 0.00 0.00 0.00 3.41
2093 2531 1.705873 AGCCCCTACGTCTTATCCAG 58.294 55.000 0.00 0.00 0.00 3.86
2094 2532 1.217183 AGCCCCTACGTCTTATCCAGA 59.783 52.381 0.00 0.00 0.00 3.86
2095 2533 2.158295 AGCCCCTACGTCTTATCCAGAT 60.158 50.000 0.00 0.00 32.60 2.90
2096 2534 2.028930 GCCCCTACGTCTTATCCAGATG 60.029 54.545 0.00 0.00 43.52 2.90
2097 2535 2.028930 CCCCTACGTCTTATCCAGATGC 60.029 54.545 0.00 0.00 41.81 3.91
2098 2536 2.028930 CCCTACGTCTTATCCAGATGCC 60.029 54.545 0.00 0.00 41.81 4.40
2099 2537 2.028930 CCTACGTCTTATCCAGATGCCC 60.029 54.545 0.00 0.00 41.81 5.36
2100 2538 0.759346 ACGTCTTATCCAGATGCCCC 59.241 55.000 0.00 0.00 41.81 5.80
2101 2539 0.035458 CGTCTTATCCAGATGCCCCC 59.965 60.000 0.00 0.00 32.60 5.40
2102 2540 1.439543 GTCTTATCCAGATGCCCCCT 58.560 55.000 0.00 0.00 32.60 4.79
2103 2541 1.349357 GTCTTATCCAGATGCCCCCTC 59.651 57.143 0.00 0.00 32.60 4.30
2104 2542 1.224120 TCTTATCCAGATGCCCCCTCT 59.776 52.381 0.00 0.00 0.00 3.69
2105 2543 2.061061 CTTATCCAGATGCCCCCTCTT 58.939 52.381 0.00 0.00 0.00 2.85
2106 2544 1.734655 TATCCAGATGCCCCCTCTTC 58.265 55.000 0.00 0.00 0.00 2.87
2107 2545 1.064824 ATCCAGATGCCCCCTCTTCC 61.065 60.000 0.00 0.00 0.00 3.46
2108 2546 1.695597 CCAGATGCCCCCTCTTCCT 60.696 63.158 0.00 0.00 0.00 3.36
2109 2547 1.284841 CCAGATGCCCCCTCTTCCTT 61.285 60.000 0.00 0.00 0.00 3.36
2110 2548 0.627986 CAGATGCCCCCTCTTCCTTT 59.372 55.000 0.00 0.00 0.00 3.11
2111 2549 1.846439 CAGATGCCCCCTCTTCCTTTA 59.154 52.381 0.00 0.00 0.00 1.85
2112 2550 2.444766 CAGATGCCCCCTCTTCCTTTAT 59.555 50.000 0.00 0.00 0.00 1.40
2113 2551 3.117360 CAGATGCCCCCTCTTCCTTTATT 60.117 47.826 0.00 0.00 0.00 1.40
2114 2552 2.826674 TGCCCCCTCTTCCTTTATTG 57.173 50.000 0.00 0.00 0.00 1.90
2115 2553 1.341976 TGCCCCCTCTTCCTTTATTGC 60.342 52.381 0.00 0.00 0.00 3.56
2116 2554 2.029520 GCCCCCTCTTCCTTTATTGCC 61.030 57.143 0.00 0.00 0.00 4.52
2117 2555 1.680338 CCCCTCTTCCTTTATTGCCG 58.320 55.000 0.00 0.00 0.00 5.69
2118 2556 1.025041 CCCTCTTCCTTTATTGCCGC 58.975 55.000 0.00 0.00 0.00 6.53
2119 2557 0.657840 CCTCTTCCTTTATTGCCGCG 59.342 55.000 0.00 0.00 0.00 6.46
2120 2558 0.657840 CTCTTCCTTTATTGCCGCGG 59.342 55.000 24.05 24.05 0.00 6.46
2121 2559 0.746563 TCTTCCTTTATTGCCGCGGG 60.747 55.000 29.38 7.93 0.00 6.13
2139 2577 3.700109 CGGAGCAGGAGAAGGTCA 58.300 61.111 0.00 0.00 35.30 4.02
2140 2578 1.515020 CGGAGCAGGAGAAGGTCAG 59.485 63.158 0.00 0.00 35.30 3.51
2141 2579 1.904032 GGAGCAGGAGAAGGTCAGG 59.096 63.158 0.00 0.00 35.30 3.86
2142 2580 1.621672 GGAGCAGGAGAAGGTCAGGG 61.622 65.000 0.00 0.00 35.30 4.45
2143 2581 1.614824 AGCAGGAGAAGGTCAGGGG 60.615 63.158 0.00 0.00 0.00 4.79
2144 2582 2.993853 CAGGAGAAGGTCAGGGGC 59.006 66.667 0.00 0.00 0.00 5.80
2145 2583 2.685380 AGGAGAAGGTCAGGGGCG 60.685 66.667 0.00 0.00 0.00 6.13
2146 2584 3.787001 GGAGAAGGTCAGGGGCGG 61.787 72.222 0.00 0.00 0.00 6.13
2147 2585 4.475135 GAGAAGGTCAGGGGCGGC 62.475 72.222 0.00 0.00 0.00 6.53
2171 2609 2.222007 CGAAGCAGGAGAGATTGAGG 57.778 55.000 0.00 0.00 0.00 3.86
2172 2610 1.202510 CGAAGCAGGAGAGATTGAGGG 60.203 57.143 0.00 0.00 0.00 4.30
2173 2611 1.140652 GAAGCAGGAGAGATTGAGGGG 59.859 57.143 0.00 0.00 0.00 4.79
2174 2612 1.148048 GCAGGAGAGATTGAGGGGC 59.852 63.158 0.00 0.00 0.00 5.80
2175 2613 1.445095 CAGGAGAGATTGAGGGGCG 59.555 63.158 0.00 0.00 0.00 6.13
2176 2614 1.764054 AGGAGAGATTGAGGGGCGG 60.764 63.158 0.00 0.00 0.00 6.13
2177 2615 2.110006 GAGAGATTGAGGGGCGGC 59.890 66.667 0.00 0.00 0.00 6.53
2178 2616 3.798954 GAGAGATTGAGGGGCGGCG 62.799 68.421 0.51 0.51 0.00 6.46
2205 2643 3.359194 CGGAGCAGGAGAGATTGTG 57.641 57.895 0.00 0.00 0.00 3.33
2206 2644 0.179089 CGGAGCAGGAGAGATTGTGG 60.179 60.000 0.00 0.00 0.00 4.17
2207 2645 0.179936 GGAGCAGGAGAGATTGTGGG 59.820 60.000 0.00 0.00 0.00 4.61
2208 2646 0.179936 GAGCAGGAGAGATTGTGGGG 59.820 60.000 0.00 0.00 0.00 4.96
2209 2647 1.452833 GCAGGAGAGATTGTGGGGC 60.453 63.158 0.00 0.00 0.00 5.80
2210 2648 1.153289 CAGGAGAGATTGTGGGGCG 60.153 63.158 0.00 0.00 0.00 6.13
2211 2649 2.190578 GGAGAGATTGTGGGGCGG 59.809 66.667 0.00 0.00 0.00 6.13
2212 2650 2.514824 GAGAGATTGTGGGGCGGC 60.515 66.667 0.00 0.00 0.00 6.53
2213 2651 4.473520 AGAGATTGTGGGGCGGCG 62.474 66.667 0.51 0.51 0.00 6.46
2240 2678 3.359194 CGGAGCAGGAGAGATTGTG 57.641 57.895 0.00 0.00 0.00 3.33
2241 2679 0.179089 CGGAGCAGGAGAGATTGTGG 60.179 60.000 0.00 0.00 0.00 4.17
2242 2680 0.179936 GGAGCAGGAGAGATTGTGGG 59.820 60.000 0.00 0.00 0.00 4.61
2243 2681 0.179936 GAGCAGGAGAGATTGTGGGG 59.820 60.000 0.00 0.00 0.00 4.96
2244 2682 1.452833 GCAGGAGAGATTGTGGGGC 60.453 63.158 0.00 0.00 0.00 5.80
2245 2683 1.993653 CAGGAGAGATTGTGGGGCA 59.006 57.895 0.00 0.00 0.00 5.36
2246 2684 0.107312 CAGGAGAGATTGTGGGGCAG 60.107 60.000 0.00 0.00 0.00 4.85
2247 2685 1.452833 GGAGAGATTGTGGGGCAGC 60.453 63.158 0.00 0.00 0.00 5.25
2248 2686 1.817099 GAGAGATTGTGGGGCAGCG 60.817 63.158 0.00 0.00 0.00 5.18
2249 2687 3.512516 GAGATTGTGGGGCAGCGC 61.513 66.667 0.00 0.00 0.00 5.92
2250 2688 4.349503 AGATTGTGGGGCAGCGCA 62.350 61.111 11.47 0.00 0.00 6.09
2251 2689 3.372730 GATTGTGGGGCAGCGCAA 61.373 61.111 11.47 0.00 0.00 4.85
2252 2690 3.631487 GATTGTGGGGCAGCGCAAC 62.631 63.158 11.47 10.13 0.00 4.17
2259 2697 4.099170 GGCAGCGCAACAGAGCAG 62.099 66.667 11.47 0.00 35.48 4.24
2260 2698 3.352222 GCAGCGCAACAGAGCAGT 61.352 61.111 11.47 0.00 35.48 4.40
2261 2699 2.901292 GCAGCGCAACAGAGCAGTT 61.901 57.895 11.47 0.00 35.48 3.16
2271 2709 3.331478 ACAGAGCAGTTGAGATTGAGG 57.669 47.619 0.00 0.00 0.00 3.86
2272 2710 2.027377 ACAGAGCAGTTGAGATTGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2273 2711 1.558756 AGAGCAGTTGAGATTGAGGGG 59.441 52.381 0.00 0.00 0.00 4.79
2274 2712 0.034670 AGCAGTTGAGATTGAGGGGC 60.035 55.000 0.00 0.00 0.00 5.80
2275 2713 1.372087 GCAGTTGAGATTGAGGGGCG 61.372 60.000 0.00 0.00 0.00 6.13
2276 2714 0.250234 CAGTTGAGATTGAGGGGCGA 59.750 55.000 0.00 0.00 0.00 5.54
2277 2715 0.539051 AGTTGAGATTGAGGGGCGAG 59.461 55.000 0.00 0.00 0.00 5.03
2278 2716 1.092345 GTTGAGATTGAGGGGCGAGC 61.092 60.000 0.00 0.00 0.00 5.03
2279 2717 1.552799 TTGAGATTGAGGGGCGAGCA 61.553 55.000 0.00 0.00 0.00 4.26
2280 2718 1.522580 GAGATTGAGGGGCGAGCAC 60.523 63.158 0.00 0.00 0.00 4.40
2281 2719 2.244117 GAGATTGAGGGGCGAGCACA 62.244 60.000 0.00 0.00 0.00 4.57
2282 2720 1.153086 GATTGAGGGGCGAGCACAT 60.153 57.895 0.00 0.00 0.00 3.21
2283 2721 1.153086 ATTGAGGGGCGAGCACATC 60.153 57.895 4.92 4.92 0.00 3.06
2284 2722 1.630126 ATTGAGGGGCGAGCACATCT 61.630 55.000 13.19 0.00 30.66 2.90
2285 2723 2.107953 GAGGGGCGAGCACATCTC 59.892 66.667 4.61 0.00 38.47 2.75
2292 2730 3.999051 GAGCACATCTCGTACGCC 58.001 61.111 11.24 0.00 31.20 5.68
2293 2731 1.138883 GAGCACATCTCGTACGCCA 59.861 57.895 11.24 0.00 31.20 5.69
2294 2732 1.140407 GAGCACATCTCGTACGCCAC 61.140 60.000 11.24 0.00 31.20 5.01
2337 2775 4.034258 TCGAGGCACGACGACCAC 62.034 66.667 2.07 0.22 46.45 4.16
2343 2781 4.415332 CACGACGACCACGGGAGG 62.415 72.222 0.00 0.00 44.46 4.30
2346 2784 4.436998 GACGACCACGGGAGGCAG 62.437 72.222 0.00 0.00 44.46 4.85
2347 2785 4.988716 ACGACCACGGGAGGCAGA 62.989 66.667 0.00 0.00 44.46 4.26
2348 2786 3.691342 CGACCACGGGAGGCAGAA 61.691 66.667 0.00 0.00 35.72 3.02
2349 2787 2.047179 GACCACGGGAGGCAGAAC 60.047 66.667 0.00 0.00 0.00 3.01
2350 2788 3.934391 GACCACGGGAGGCAGAACG 62.934 68.421 0.00 0.00 0.00 3.95
2352 2790 4.680237 CACGGGAGGCAGAACGCA 62.680 66.667 0.00 0.00 45.17 5.24
2353 2791 3.706373 ACGGGAGGCAGAACGCAT 61.706 61.111 0.00 0.00 45.17 4.73
2354 2792 3.197790 CGGGAGGCAGAACGCATG 61.198 66.667 0.00 0.00 45.17 4.06
2355 2793 3.512516 GGGAGGCAGAACGCATGC 61.513 66.667 7.91 7.91 45.17 4.06
2356 2794 2.437359 GGAGGCAGAACGCATGCT 60.437 61.111 17.13 0.00 45.17 3.79
2357 2795 2.758089 GGAGGCAGAACGCATGCTG 61.758 63.158 17.13 11.87 45.17 4.41
2358 2796 2.749044 AGGCAGAACGCATGCTGG 60.749 61.111 17.13 3.27 45.17 4.85
2360 2798 4.487412 GCAGAACGCATGCTGGCC 62.487 66.667 17.13 0.00 40.59 5.36
2361 2799 4.170062 CAGAACGCATGCTGGCCG 62.170 66.667 17.13 1.61 0.00 6.13
2437 2875 3.764049 GACGCGACGTGCTGGAAC 61.764 66.667 15.93 0.00 41.37 3.62
2448 2886 3.716006 CTGGAACGCCGTGCTGTG 61.716 66.667 0.00 0.00 36.79 3.66
2486 2924 5.877012 ACCTGCATTATGACAGTACAAAGAG 59.123 40.000 12.84 2.10 31.76 2.85
2487 2925 5.220739 CCTGCATTATGACAGTACAAAGAGC 60.221 44.000 12.84 0.00 31.76 4.09
2489 2927 5.122239 TGCATTATGACAGTACAAAGAGCAC 59.878 40.000 0.00 0.00 0.00 4.40
2492 2930 3.769739 TGACAGTACAAAGAGCACCAT 57.230 42.857 0.00 0.00 0.00 3.55
2530 2968 4.284490 ACATGCAGATCCGTAGACCATAAT 59.716 41.667 0.00 0.00 0.00 1.28
2533 2971 4.238514 GCAGATCCGTAGACCATAATGAC 58.761 47.826 0.00 0.00 0.00 3.06
2546 2984 3.555956 CCATAATGACGACTACAAGCACC 59.444 47.826 0.00 0.00 0.00 5.01
2550 2988 0.172803 GACGACTACAAGCACCGGAT 59.827 55.000 9.46 0.00 0.00 4.18
2552 2990 0.866061 CGACTACAAGCACCGGATCG 60.866 60.000 9.46 0.00 0.00 3.69
2556 2994 1.320344 TACAAGCACCGGATCGAGCT 61.320 55.000 9.46 6.36 38.98 4.09
2561 2999 1.227089 CACCGGATCGAGCTGAAGG 60.227 63.158 11.95 7.24 0.00 3.46
2562 3000 1.379977 ACCGGATCGAGCTGAAGGA 60.380 57.895 11.95 0.00 0.00 3.36
2587 3025 1.125633 GCCGTTATCACCCCTTCCTA 58.874 55.000 0.00 0.00 0.00 2.94
2590 3028 1.269621 CGTTATCACCCCTTCCTAGCG 60.270 57.143 0.00 0.00 0.00 4.26
2593 3031 3.458163 CACCCCTTCCTAGCGCGA 61.458 66.667 12.10 0.00 0.00 5.87
2610 3048 0.940991 CGAAGCTGGCCAAAACTTGC 60.941 55.000 17.52 11.60 0.00 4.01
2615 3053 2.368221 AGCTGGCCAAAACTTGCAATAA 59.632 40.909 7.01 0.00 0.00 1.40
2714 3564 0.620030 CGGATGGCCATATCCCATGA 59.380 55.000 20.84 0.00 42.94 3.07
2765 3615 1.737793 CGCCATGTAGAAGAACAACCC 59.262 52.381 0.00 0.00 32.02 4.11
2809 3660 1.104630 CCGAGTCTCTGAAGTACCCC 58.895 60.000 0.00 0.00 0.00 4.95
2814 3665 0.252103 TCTCTGAAGTACCCCGCCTT 60.252 55.000 0.00 0.00 0.00 4.35
2849 3700 4.320861 CGCACAATGAATTAGGAACCACAA 60.321 41.667 0.00 0.00 0.00 3.33
2862 3713 5.501156 AGGAACCACAATAATTCTCCAGAC 58.499 41.667 0.00 0.00 0.00 3.51
2877 3731 1.205893 CCAGACTGGTGCTAGAAGGTC 59.794 57.143 13.84 0.00 31.35 3.85
2878 3732 2.175202 CAGACTGGTGCTAGAAGGTCT 58.825 52.381 0.00 0.00 34.87 3.85
2879 3733 2.564947 CAGACTGGTGCTAGAAGGTCTT 59.435 50.000 0.00 0.00 32.65 3.01
2880 3734 2.564947 AGACTGGTGCTAGAAGGTCTTG 59.435 50.000 0.00 0.00 31.14 3.02
2881 3735 2.563179 GACTGGTGCTAGAAGGTCTTGA 59.437 50.000 0.00 0.00 0.00 3.02
2882 3736 3.177228 ACTGGTGCTAGAAGGTCTTGAT 58.823 45.455 0.00 0.00 0.00 2.57
2883 3737 3.584848 ACTGGTGCTAGAAGGTCTTGATT 59.415 43.478 0.00 0.00 0.00 2.57
2884 3738 3.937706 CTGGTGCTAGAAGGTCTTGATTG 59.062 47.826 0.00 0.00 0.00 2.67
2885 3739 3.582647 TGGTGCTAGAAGGTCTTGATTGA 59.417 43.478 0.00 0.00 0.00 2.57
2886 3740 4.041567 TGGTGCTAGAAGGTCTTGATTGAA 59.958 41.667 0.00 0.00 0.00 2.69
2887 3741 5.003804 GGTGCTAGAAGGTCTTGATTGAAA 58.996 41.667 0.00 0.00 0.00 2.69
2888 3742 5.473504 GGTGCTAGAAGGTCTTGATTGAAAA 59.526 40.000 0.00 0.00 0.00 2.29
2889 3743 6.374578 GTGCTAGAAGGTCTTGATTGAAAAC 58.625 40.000 0.00 0.00 0.00 2.43
2890 3744 6.017109 GTGCTAGAAGGTCTTGATTGAAAACA 60.017 38.462 0.00 0.00 0.00 2.83
2891 3745 6.716628 TGCTAGAAGGTCTTGATTGAAAACAT 59.283 34.615 0.00 0.00 0.00 2.71
2892 3746 7.882791 TGCTAGAAGGTCTTGATTGAAAACATA 59.117 33.333 0.00 0.00 0.00 2.29
2893 3747 8.730680 GCTAGAAGGTCTTGATTGAAAACATAA 58.269 33.333 0.00 0.00 0.00 1.90
2916 3770 5.932619 AAAATTATAAGCCCAAGACCACC 57.067 39.130 0.00 0.00 0.00 4.61
2917 3771 4.881157 AATTATAAGCCCAAGACCACCT 57.119 40.909 0.00 0.00 0.00 4.00
2918 3772 4.881157 ATTATAAGCCCAAGACCACCTT 57.119 40.909 0.00 0.00 34.91 3.50
2919 3773 2.808906 ATAAGCCCAAGACCACCTTC 57.191 50.000 0.00 0.00 31.42 3.46
2920 3774 1.440618 TAAGCCCAAGACCACCTTCA 58.559 50.000 0.00 0.00 31.42 3.02
2921 3775 0.178990 AAGCCCAAGACCACCTTCAC 60.179 55.000 0.00 0.00 31.42 3.18
2922 3776 1.966451 GCCCAAGACCACCTTCACG 60.966 63.158 0.00 0.00 31.42 4.35
2923 3777 1.966451 CCCAAGACCACCTTCACGC 60.966 63.158 0.00 0.00 31.42 5.34
2924 3778 1.071471 CCAAGACCACCTTCACGCT 59.929 57.895 0.00 0.00 31.42 5.07
2925 3779 0.535102 CCAAGACCACCTTCACGCTT 60.535 55.000 0.00 0.00 31.42 4.68
2926 3780 1.308998 CAAGACCACCTTCACGCTTT 58.691 50.000 0.00 0.00 31.42 3.51
2927 3781 1.264288 CAAGACCACCTTCACGCTTTC 59.736 52.381 0.00 0.00 31.42 2.62
2928 3782 0.759346 AGACCACCTTCACGCTTTCT 59.241 50.000 0.00 0.00 0.00 2.52
2929 3783 1.141053 AGACCACCTTCACGCTTTCTT 59.859 47.619 0.00 0.00 0.00 2.52
2930 3784 1.531578 GACCACCTTCACGCTTTCTTC 59.468 52.381 0.00 0.00 0.00 2.87
2931 3785 1.141053 ACCACCTTCACGCTTTCTTCT 59.859 47.619 0.00 0.00 0.00 2.85
2932 3786 1.532868 CCACCTTCACGCTTTCTTCTG 59.467 52.381 0.00 0.00 0.00 3.02
2933 3787 1.069636 CACCTTCACGCTTTCTTCTGC 60.070 52.381 0.00 0.00 0.00 4.26
2934 3788 1.229428 CCTTCACGCTTTCTTCTGCA 58.771 50.000 0.00 0.00 0.00 4.41
2935 3789 1.069636 CCTTCACGCTTTCTTCTGCAC 60.070 52.381 0.00 0.00 0.00 4.57
2936 3790 1.599071 CTTCACGCTTTCTTCTGCACA 59.401 47.619 0.00 0.00 0.00 4.57
2937 3791 1.882912 TCACGCTTTCTTCTGCACAT 58.117 45.000 0.00 0.00 0.00 3.21
2938 3792 1.800586 TCACGCTTTCTTCTGCACATC 59.199 47.619 0.00 0.00 0.00 3.06
2939 3793 1.802960 CACGCTTTCTTCTGCACATCT 59.197 47.619 0.00 0.00 0.00 2.90
2940 3794 2.225019 CACGCTTTCTTCTGCACATCTT 59.775 45.455 0.00 0.00 0.00 2.40
2941 3795 2.225019 ACGCTTTCTTCTGCACATCTTG 59.775 45.455 0.00 0.00 0.00 3.02
2942 3796 2.225019 CGCTTTCTTCTGCACATCTTGT 59.775 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.172512 ATGGCAGAGGCAGAGGCG 62.173 66.667 0.00 0.00 42.43 5.52
33 34 1.451567 CACATGGCAGAGGCAGAGG 60.452 63.158 0.00 0.00 42.43 3.69
106 109 5.753438 CGTAGCATGCTTCTAATTGGTTAGA 59.247 40.000 28.02 0.00 43.43 2.10
141 144 5.343058 CCTACTGTTTGTTTGATTTCATGCG 59.657 40.000 0.00 0.00 0.00 4.73
166 169 8.899771 GTTTAGGTGGCAGTATGTAATATGTTT 58.100 33.333 0.00 0.00 39.31 2.83
224 227 4.415881 TGCACTACATTATGGAACGGAT 57.584 40.909 0.00 0.00 0.00 4.18
257 260 7.340743 TCAAAGATTGTAGGGTTTGACTTTTCA 59.659 33.333 0.00 0.00 34.72 2.69
277 280 6.597832 TTTCTCCAAAAACTTGGTCAAAGA 57.402 33.333 3.92 0.00 42.62 2.52
295 298 7.486232 GGCATTCTAGCTGTAAATGTTTTTCTC 59.514 37.037 14.93 2.24 33.82 2.87
407 515 7.671495 AAAGTCAAACTTTGCAAACTTTGAT 57.329 28.000 31.56 21.85 45.83 2.57
463 571 9.449719 AAACATAACAAAATAGTACTCCCTCTG 57.550 33.333 0.00 0.00 0.00 3.35
495 603 4.192317 GCCACAAAATAGTCCTTCGATCT 58.808 43.478 0.00 0.00 0.00 2.75
516 624 7.061094 GCGGCAAATATAATTTAGATGAACTGC 59.939 37.037 0.00 0.00 0.00 4.40
538 646 9.471742 CACAAGTAATTAAAATATTTTTGCGGC 57.528 29.630 18.14 7.37 0.00 6.53
634 983 2.354821 AGGAACAAACGACAACTCTTGC 59.645 45.455 0.00 0.00 0.00 4.01
645 994 3.427503 GGCATGGTATCAAGGAACAAACG 60.428 47.826 0.00 0.00 0.00 3.60
674 1023 3.282021 AGCATGTAGGCAAATCGAACAT 58.718 40.909 0.00 0.00 35.83 2.71
696 1045 6.270231 GGGTATGATCAAGGACCTAAGTACAT 59.730 42.308 18.93 0.73 32.24 2.29
703 1052 7.699709 TTAAATGGGTATGATCAAGGACCTA 57.300 36.000 18.93 15.42 32.24 3.08
898 1300 1.152963 GCAATGGCCTACGTGGGAT 60.153 57.895 23.78 3.97 36.00 3.85
950 1359 4.580580 CCAGGGAGAGTATTAAAATGGTGC 59.419 45.833 0.00 0.00 0.00 5.01
1001 1412 2.607187 GAGGCGTCGGGTTCATATATG 58.393 52.381 6.36 6.36 0.00 1.78
1030 1441 2.521465 TGGCTTTGGCTGTGTGGG 60.521 61.111 0.00 0.00 38.73 4.61
1607 2037 1.594310 GCTTGAAGGAGAGCGGTCT 59.406 57.895 18.67 18.67 34.86 3.85
1609 2039 2.665603 GGCTTGAAGGAGAGCGGT 59.334 61.111 0.00 0.00 39.78 5.68
1703 2133 4.476628 TGAGCTATGATGCTTGAAGTGA 57.523 40.909 0.00 0.00 44.17 3.41
1704 2134 5.752892 ATTGAGCTATGATGCTTGAAGTG 57.247 39.130 0.00 0.00 44.17 3.16
1705 2135 6.376299 TGAAATTGAGCTATGATGCTTGAAGT 59.624 34.615 0.00 0.00 44.17 3.01
1706 2136 6.792326 TGAAATTGAGCTATGATGCTTGAAG 58.208 36.000 0.00 0.00 44.17 3.02
1707 2137 6.762702 TGAAATTGAGCTATGATGCTTGAA 57.237 33.333 0.00 0.00 44.17 2.69
1708 2138 6.544564 TGATGAAATTGAGCTATGATGCTTGA 59.455 34.615 0.00 0.00 44.17 3.02
1709 2139 6.735130 TGATGAAATTGAGCTATGATGCTTG 58.265 36.000 0.00 0.00 44.17 4.01
1710 2140 6.954487 TGATGAAATTGAGCTATGATGCTT 57.046 33.333 0.00 0.00 44.17 3.91
1722 2152 9.767228 ACTTCATGTTTGAAATGATGAAATTGA 57.233 25.926 13.10 0.00 41.22 2.57
1741 2171 6.374053 TGGTATGTGTGGTTATCAACTTCATG 59.626 38.462 0.00 0.00 0.00 3.07
1745 2175 6.245408 ACATGGTATGTGTGGTTATCAACTT 58.755 36.000 0.00 0.00 43.01 2.66
1765 2195 6.018751 CGGAGTTAATCATCAGTAACCACATG 60.019 42.308 0.00 0.00 34.23 3.21
1788 2218 2.593775 CGCATGCACTTCAAATTAACGG 59.406 45.455 19.57 0.00 0.00 4.44
1794 2224 2.412716 CGTACACGCATGCACTTCAAAT 60.413 45.455 19.57 0.00 0.00 2.32
1853 2284 2.356194 CAAACCCAAAGCAGCCGC 60.356 61.111 0.00 0.00 38.99 6.53
1868 2299 7.972832 AAAAACAGAATATACACGGTCTCAA 57.027 32.000 0.00 0.00 0.00 3.02
1947 2385 2.755650 CGGGTAGAAGCAATAATCGCT 58.244 47.619 0.00 0.00 42.98 4.93
1948 2386 1.194772 GCGGGTAGAAGCAATAATCGC 59.805 52.381 0.00 0.00 0.00 4.58
1949 2387 2.731976 GAGCGGGTAGAAGCAATAATCG 59.268 50.000 0.00 0.00 35.48 3.34
1950 2388 2.731976 CGAGCGGGTAGAAGCAATAATC 59.268 50.000 0.00 0.00 35.48 1.75
1951 2389 2.755650 CGAGCGGGTAGAAGCAATAAT 58.244 47.619 0.00 0.00 35.48 1.28
1952 2390 1.805120 GCGAGCGGGTAGAAGCAATAA 60.805 52.381 0.00 0.00 35.48 1.40
1953 2391 0.249322 GCGAGCGGGTAGAAGCAATA 60.249 55.000 0.00 0.00 35.48 1.90
1954 2392 1.521681 GCGAGCGGGTAGAAGCAAT 60.522 57.895 0.00 0.00 35.48 3.56
1955 2393 2.125673 GCGAGCGGGTAGAAGCAA 60.126 61.111 0.00 0.00 35.48 3.91
1956 2394 3.064987 GAGCGAGCGGGTAGAAGCA 62.065 63.158 0.00 0.00 35.48 3.91
1957 2395 2.278923 GAGCGAGCGGGTAGAAGC 60.279 66.667 0.00 0.00 0.00 3.86
1958 2396 1.226717 GTGAGCGAGCGGGTAGAAG 60.227 63.158 0.00 0.00 0.00 2.85
1959 2397 2.707849 GGTGAGCGAGCGGGTAGAA 61.708 63.158 0.00 0.00 0.00 2.10
1960 2398 3.138798 GGTGAGCGAGCGGGTAGA 61.139 66.667 0.00 0.00 0.00 2.59
1961 2399 4.554363 CGGTGAGCGAGCGGGTAG 62.554 72.222 0.00 0.00 42.02 3.18
1967 2405 3.685214 ATGACGACGGTGAGCGAGC 62.685 63.158 12.27 0.97 0.00 5.03
1968 2406 1.869574 CATGACGACGGTGAGCGAG 60.870 63.158 12.27 6.90 0.00 5.03
1969 2407 2.178273 CATGACGACGGTGAGCGA 59.822 61.111 12.27 0.00 0.00 4.93
1970 2408 3.545481 GCATGACGACGGTGAGCG 61.545 66.667 1.13 1.13 0.00 5.03
1971 2409 1.291877 AAAGCATGACGACGGTGAGC 61.292 55.000 0.00 0.00 0.00 4.26
1972 2410 1.136252 CAAAAGCATGACGACGGTGAG 60.136 52.381 0.00 0.00 0.00 3.51
1973 2411 0.865111 CAAAAGCATGACGACGGTGA 59.135 50.000 0.00 0.00 0.00 4.02
1974 2412 0.725784 GCAAAAGCATGACGACGGTG 60.726 55.000 0.00 0.00 0.00 4.94
1975 2413 0.884704 AGCAAAAGCATGACGACGGT 60.885 50.000 0.00 0.00 0.00 4.83
1976 2414 1.075542 TAGCAAAAGCATGACGACGG 58.924 50.000 0.00 0.00 0.00 4.79
1977 2415 2.873170 TTAGCAAAAGCATGACGACG 57.127 45.000 0.00 0.00 0.00 5.12
1978 2416 3.668656 GGTTTTAGCAAAAGCATGACGAC 59.331 43.478 14.49 0.00 45.53 4.34
1979 2417 3.896122 GGTTTTAGCAAAAGCATGACGA 58.104 40.909 14.49 0.00 45.53 4.20
2000 2438 4.457949 GTGTATTACTGAAAACACAGGGGG 59.542 45.833 0.00 0.00 41.43 5.40
2001 2439 4.457949 GGTGTATTACTGAAAACACAGGGG 59.542 45.833 6.76 0.00 43.13 4.79
2002 2440 4.457949 GGGTGTATTACTGAAAACACAGGG 59.542 45.833 6.76 0.00 43.13 4.45
2003 2441 4.457949 GGGGTGTATTACTGAAAACACAGG 59.542 45.833 6.76 0.00 43.13 4.00
2004 2442 4.153475 CGGGGTGTATTACTGAAAACACAG 59.847 45.833 6.76 0.00 43.13 3.66
2005 2443 4.066490 CGGGGTGTATTACTGAAAACACA 58.934 43.478 6.76 0.00 43.13 3.72
2006 2444 3.120095 GCGGGGTGTATTACTGAAAACAC 60.120 47.826 0.00 0.00 41.14 3.32
2007 2445 3.075884 GCGGGGTGTATTACTGAAAACA 58.924 45.455 0.00 0.00 0.00 2.83
2008 2446 3.075884 TGCGGGGTGTATTACTGAAAAC 58.924 45.455 0.00 0.00 0.00 2.43
2009 2447 3.420300 TGCGGGGTGTATTACTGAAAA 57.580 42.857 0.00 0.00 0.00 2.29
2010 2448 3.420300 TTGCGGGGTGTATTACTGAAA 57.580 42.857 0.00 0.00 0.00 2.69
2011 2449 3.537580 GATTGCGGGGTGTATTACTGAA 58.462 45.455 0.00 0.00 0.00 3.02
2012 2450 2.158871 GGATTGCGGGGTGTATTACTGA 60.159 50.000 0.00 0.00 0.00 3.41
2013 2451 2.218603 GGATTGCGGGGTGTATTACTG 58.781 52.381 0.00 0.00 0.00 2.74
2014 2452 1.142262 GGGATTGCGGGGTGTATTACT 59.858 52.381 0.00 0.00 0.00 2.24
2015 2453 1.142262 AGGGATTGCGGGGTGTATTAC 59.858 52.381 0.00 0.00 0.00 1.89
2016 2454 1.418637 GAGGGATTGCGGGGTGTATTA 59.581 52.381 0.00 0.00 0.00 0.98
2017 2455 0.182775 GAGGGATTGCGGGGTGTATT 59.817 55.000 0.00 0.00 0.00 1.89
2018 2456 0.694444 AGAGGGATTGCGGGGTGTAT 60.694 55.000 0.00 0.00 0.00 2.29
2019 2457 0.912487 AAGAGGGATTGCGGGGTGTA 60.912 55.000 0.00 0.00 0.00 2.90
2020 2458 2.198304 GAAGAGGGATTGCGGGGTGT 62.198 60.000 0.00 0.00 0.00 4.16
2021 2459 1.452108 GAAGAGGGATTGCGGGGTG 60.452 63.158 0.00 0.00 0.00 4.61
2022 2460 0.326238 TAGAAGAGGGATTGCGGGGT 60.326 55.000 0.00 0.00 0.00 4.95
2023 2461 0.106894 GTAGAAGAGGGATTGCGGGG 59.893 60.000 0.00 0.00 0.00 5.73
2024 2462 0.830648 TGTAGAAGAGGGATTGCGGG 59.169 55.000 0.00 0.00 0.00 6.13
2025 2463 2.158900 ACATGTAGAAGAGGGATTGCGG 60.159 50.000 0.00 0.00 0.00 5.69
2026 2464 2.868583 CACATGTAGAAGAGGGATTGCG 59.131 50.000 0.00 0.00 0.00 4.85
2027 2465 3.878778 ACACATGTAGAAGAGGGATTGC 58.121 45.455 0.00 0.00 0.00 3.56
2028 2466 7.921786 TTTTACACATGTAGAAGAGGGATTG 57.078 36.000 0.00 0.00 0.00 2.67
2029 2467 7.119262 CGTTTTTACACATGTAGAAGAGGGATT 59.881 37.037 0.00 0.00 0.00 3.01
2030 2468 6.594159 CGTTTTTACACATGTAGAAGAGGGAT 59.406 38.462 0.00 0.00 0.00 3.85
2031 2469 5.929992 CGTTTTTACACATGTAGAAGAGGGA 59.070 40.000 0.00 0.00 0.00 4.20
2032 2470 5.121768 CCGTTTTTACACATGTAGAAGAGGG 59.878 44.000 0.00 1.01 0.00 4.30
2033 2471 5.699458 ACCGTTTTTACACATGTAGAAGAGG 59.301 40.000 0.00 12.46 33.51 3.69
2034 2472 6.780706 ACCGTTTTTACACATGTAGAAGAG 57.219 37.500 0.00 0.00 0.00 2.85
2035 2473 6.074195 CGAACCGTTTTTACACATGTAGAAGA 60.074 38.462 0.00 0.00 0.00 2.87
2036 2474 6.068931 CGAACCGTTTTTACACATGTAGAAG 58.931 40.000 0.00 0.00 0.00 2.85
2037 2475 5.558653 GCGAACCGTTTTTACACATGTAGAA 60.559 40.000 0.00 0.00 0.00 2.10
2038 2476 4.084433 GCGAACCGTTTTTACACATGTAGA 60.084 41.667 0.00 0.00 0.00 2.59
2039 2477 4.084223 AGCGAACCGTTTTTACACATGTAG 60.084 41.667 0.00 0.00 0.00 2.74
2040 2478 3.808726 AGCGAACCGTTTTTACACATGTA 59.191 39.130 0.00 0.00 0.00 2.29
2041 2479 2.614983 AGCGAACCGTTTTTACACATGT 59.385 40.909 0.00 0.00 0.00 3.21
2042 2480 3.262135 AGCGAACCGTTTTTACACATG 57.738 42.857 0.00 0.00 0.00 3.21
2043 2481 3.974871 AAGCGAACCGTTTTTACACAT 57.025 38.095 0.00 0.00 0.00 3.21
2044 2482 3.374678 AGAAAGCGAACCGTTTTTACACA 59.625 39.130 3.02 0.00 40.02 3.72
2045 2483 3.943958 AGAAAGCGAACCGTTTTTACAC 58.056 40.909 3.02 0.00 40.02 2.90
2046 2484 4.569966 TGTAGAAAGCGAACCGTTTTTACA 59.430 37.500 3.02 9.60 40.02 2.41
2047 2485 5.081888 TGTAGAAAGCGAACCGTTTTTAC 57.918 39.130 3.02 7.77 40.02 2.01
2048 2486 5.731599 TTGTAGAAAGCGAACCGTTTTTA 57.268 34.783 3.02 0.00 40.02 1.52
2049 2487 4.619437 TTGTAGAAAGCGAACCGTTTTT 57.381 36.364 3.02 0.00 40.02 1.94
2050 2488 4.142643 TGTTTGTAGAAAGCGAACCGTTTT 60.143 37.500 1.10 1.10 42.31 2.43
2051 2489 3.374678 TGTTTGTAGAAAGCGAACCGTTT 59.625 39.130 0.00 0.00 31.09 3.60
2052 2490 2.937799 TGTTTGTAGAAAGCGAACCGTT 59.062 40.909 0.00 0.00 31.09 4.44
2053 2491 2.553086 TGTTTGTAGAAAGCGAACCGT 58.447 42.857 0.00 0.00 31.09 4.83
2054 2492 3.541711 CTTGTTTGTAGAAAGCGAACCG 58.458 45.455 0.00 0.00 31.09 4.44
2055 2493 3.297472 GCTTGTTTGTAGAAAGCGAACC 58.703 45.455 0.00 0.00 37.21 3.62
2056 2494 3.297472 GGCTTGTTTGTAGAAAGCGAAC 58.703 45.455 0.00 0.00 45.77 3.95
2057 2495 2.292292 GGGCTTGTTTGTAGAAAGCGAA 59.708 45.455 0.00 0.00 45.77 4.70
2058 2496 1.877443 GGGCTTGTTTGTAGAAAGCGA 59.123 47.619 0.00 0.00 45.77 4.93
2059 2497 1.068541 GGGGCTTGTTTGTAGAAAGCG 60.069 52.381 0.00 0.00 45.77 4.68
2060 2498 2.239400 AGGGGCTTGTTTGTAGAAAGC 58.761 47.619 0.00 0.00 44.43 3.51
2061 2499 3.435671 CGTAGGGGCTTGTTTGTAGAAAG 59.564 47.826 0.00 0.00 0.00 2.62
2062 2500 3.181452 ACGTAGGGGCTTGTTTGTAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
2063 2501 2.369532 ACGTAGGGGCTTGTTTGTAGAA 59.630 45.455 0.00 0.00 0.00 2.10
2064 2502 1.972795 ACGTAGGGGCTTGTTTGTAGA 59.027 47.619 0.00 0.00 0.00 2.59
2065 2503 2.028385 AGACGTAGGGGCTTGTTTGTAG 60.028 50.000 0.00 0.00 0.00 2.74
2066 2504 1.972795 AGACGTAGGGGCTTGTTTGTA 59.027 47.619 0.00 0.00 0.00 2.41
2067 2505 0.763035 AGACGTAGGGGCTTGTTTGT 59.237 50.000 0.00 0.00 0.00 2.83
2068 2506 1.892209 AAGACGTAGGGGCTTGTTTG 58.108 50.000 0.00 0.00 0.00 2.93
2069 2507 3.370209 GGATAAGACGTAGGGGCTTGTTT 60.370 47.826 0.00 0.00 0.00 2.83
2070 2508 2.169978 GGATAAGACGTAGGGGCTTGTT 59.830 50.000 0.00 0.00 0.00 2.83
2071 2509 1.761198 GGATAAGACGTAGGGGCTTGT 59.239 52.381 0.00 0.00 0.00 3.16
2072 2510 1.760613 TGGATAAGACGTAGGGGCTTG 59.239 52.381 0.00 0.00 0.00 4.01
2073 2511 2.040178 CTGGATAAGACGTAGGGGCTT 58.960 52.381 0.00 0.00 0.00 4.35
2074 2512 1.217183 TCTGGATAAGACGTAGGGGCT 59.783 52.381 0.00 0.00 0.00 5.19
2075 2513 1.700955 TCTGGATAAGACGTAGGGGC 58.299 55.000 0.00 0.00 0.00 5.80
2076 2514 2.028930 GCATCTGGATAAGACGTAGGGG 60.029 54.545 0.00 0.00 37.88 4.79
2077 2515 2.028930 GGCATCTGGATAAGACGTAGGG 60.029 54.545 0.00 0.00 37.88 3.53
2078 2516 2.028930 GGGCATCTGGATAAGACGTAGG 60.029 54.545 0.00 0.00 37.88 3.18
2079 2517 2.028930 GGGGCATCTGGATAAGACGTAG 60.029 54.545 0.00 0.00 37.88 3.51
2080 2518 1.968493 GGGGCATCTGGATAAGACGTA 59.032 52.381 0.00 0.00 37.88 3.57
2081 2519 0.759346 GGGGCATCTGGATAAGACGT 59.241 55.000 0.00 0.00 37.88 4.34
2082 2520 0.035458 GGGGGCATCTGGATAAGACG 59.965 60.000 0.00 0.00 37.88 4.18
2083 2521 1.349357 GAGGGGGCATCTGGATAAGAC 59.651 57.143 0.00 0.00 37.88 3.01
2084 2522 1.224120 AGAGGGGGCATCTGGATAAGA 59.776 52.381 0.00 0.00 39.94 2.10
2085 2523 1.739750 AGAGGGGGCATCTGGATAAG 58.260 55.000 0.00 0.00 0.00 1.73
2086 2524 2.057922 GAAGAGGGGGCATCTGGATAA 58.942 52.381 0.00 0.00 0.00 1.75
2087 2525 1.734655 GAAGAGGGGGCATCTGGATA 58.265 55.000 0.00 0.00 0.00 2.59
2088 2526 1.064824 GGAAGAGGGGGCATCTGGAT 61.065 60.000 0.00 0.00 0.00 3.41
2089 2527 1.694169 GGAAGAGGGGGCATCTGGA 60.694 63.158 0.00 0.00 0.00 3.86
2090 2528 1.284841 AAGGAAGAGGGGGCATCTGG 61.285 60.000 0.00 0.00 0.00 3.86
2091 2529 0.627986 AAAGGAAGAGGGGGCATCTG 59.372 55.000 0.00 0.00 0.00 2.90
2092 2530 2.286935 TAAAGGAAGAGGGGGCATCT 57.713 50.000 0.00 0.00 0.00 2.90
2093 2531 3.225940 CAATAAAGGAAGAGGGGGCATC 58.774 50.000 0.00 0.00 0.00 3.91
2094 2532 2.690936 GCAATAAAGGAAGAGGGGGCAT 60.691 50.000 0.00 0.00 0.00 4.40
2095 2533 1.341976 GCAATAAAGGAAGAGGGGGCA 60.342 52.381 0.00 0.00 0.00 5.36
2096 2534 1.403814 GCAATAAAGGAAGAGGGGGC 58.596 55.000 0.00 0.00 0.00 5.80
2097 2535 1.750682 CGGCAATAAAGGAAGAGGGGG 60.751 57.143 0.00 0.00 0.00 5.40
2098 2536 1.680338 CGGCAATAAAGGAAGAGGGG 58.320 55.000 0.00 0.00 0.00 4.79
2099 2537 1.025041 GCGGCAATAAAGGAAGAGGG 58.975 55.000 0.00 0.00 0.00 4.30
2100 2538 0.657840 CGCGGCAATAAAGGAAGAGG 59.342 55.000 0.00 0.00 0.00 3.69
2101 2539 0.657840 CCGCGGCAATAAAGGAAGAG 59.342 55.000 14.67 0.00 0.00 2.85
2102 2540 0.746563 CCCGCGGCAATAAAGGAAGA 60.747 55.000 22.85 0.00 0.00 2.87
2103 2541 1.727467 CCCGCGGCAATAAAGGAAG 59.273 57.895 22.85 0.00 0.00 3.46
2104 2542 3.912614 CCCGCGGCAATAAAGGAA 58.087 55.556 22.85 0.00 0.00 3.36
2118 2556 4.521062 CTTCTCCTGCTCCGCCCG 62.521 72.222 0.00 0.00 0.00 6.13
2119 2557 4.168291 CCTTCTCCTGCTCCGCCC 62.168 72.222 0.00 0.00 0.00 6.13
2120 2558 3.378399 GACCTTCTCCTGCTCCGCC 62.378 68.421 0.00 0.00 0.00 6.13
2121 2559 2.185608 GACCTTCTCCTGCTCCGC 59.814 66.667 0.00 0.00 0.00 5.54
2122 2560 1.515020 CTGACCTTCTCCTGCTCCG 59.485 63.158 0.00 0.00 0.00 4.63
2123 2561 1.621672 CCCTGACCTTCTCCTGCTCC 61.622 65.000 0.00 0.00 0.00 4.70
2124 2562 1.621672 CCCCTGACCTTCTCCTGCTC 61.622 65.000 0.00 0.00 0.00 4.26
2125 2563 1.614824 CCCCTGACCTTCTCCTGCT 60.615 63.158 0.00 0.00 0.00 4.24
2126 2564 2.993853 CCCCTGACCTTCTCCTGC 59.006 66.667 0.00 0.00 0.00 4.85
2127 2565 2.993853 GCCCCTGACCTTCTCCTG 59.006 66.667 0.00 0.00 0.00 3.86
2128 2566 2.685380 CGCCCCTGACCTTCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
2129 2567 3.787001 CCGCCCCTGACCTTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
2130 2568 4.475135 GCCGCCCCTGACCTTCTC 62.475 72.222 0.00 0.00 0.00 2.87
2148 2586 2.914777 AATCTCTCCTGCTTCGCCGC 62.915 60.000 0.00 0.00 0.00 6.53
2149 2587 1.142748 AATCTCTCCTGCTTCGCCG 59.857 57.895 0.00 0.00 0.00 6.46
2150 2588 0.176680 TCAATCTCTCCTGCTTCGCC 59.823 55.000 0.00 0.00 0.00 5.54
2151 2589 1.569708 CTCAATCTCTCCTGCTTCGC 58.430 55.000 0.00 0.00 0.00 4.70
2152 2590 1.202510 CCCTCAATCTCTCCTGCTTCG 60.203 57.143 0.00 0.00 0.00 3.79
2153 2591 1.140652 CCCCTCAATCTCTCCTGCTTC 59.859 57.143 0.00 0.00 0.00 3.86
2154 2592 1.211456 CCCCTCAATCTCTCCTGCTT 58.789 55.000 0.00 0.00 0.00 3.91
2155 2593 1.344191 GCCCCTCAATCTCTCCTGCT 61.344 60.000 0.00 0.00 0.00 4.24
2156 2594 1.148048 GCCCCTCAATCTCTCCTGC 59.852 63.158 0.00 0.00 0.00 4.85
2157 2595 1.445095 CGCCCCTCAATCTCTCCTG 59.555 63.158 0.00 0.00 0.00 3.86
2158 2596 1.764054 CCGCCCCTCAATCTCTCCT 60.764 63.158 0.00 0.00 0.00 3.69
2159 2597 2.825264 CCGCCCCTCAATCTCTCC 59.175 66.667 0.00 0.00 0.00 3.71
2160 2598 2.110006 GCCGCCCCTCAATCTCTC 59.890 66.667 0.00 0.00 0.00 3.20
2161 2599 3.854669 CGCCGCCCCTCAATCTCT 61.855 66.667 0.00 0.00 0.00 3.10
2184 2622 2.790791 AATCTCTCCTGCTCCGCCG 61.791 63.158 0.00 0.00 0.00 6.46
2185 2623 1.227497 CAATCTCTCCTGCTCCGCC 60.227 63.158 0.00 0.00 0.00 6.13
2186 2624 0.809241 CACAATCTCTCCTGCTCCGC 60.809 60.000 0.00 0.00 0.00 5.54
2187 2625 0.179089 CCACAATCTCTCCTGCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
2188 2626 0.179936 CCCACAATCTCTCCTGCTCC 59.820 60.000 0.00 0.00 0.00 4.70
2189 2627 0.179936 CCCCACAATCTCTCCTGCTC 59.820 60.000 0.00 0.00 0.00 4.26
2190 2628 1.919600 GCCCCACAATCTCTCCTGCT 61.920 60.000 0.00 0.00 0.00 4.24
2191 2629 1.452833 GCCCCACAATCTCTCCTGC 60.453 63.158 0.00 0.00 0.00 4.85
2192 2630 1.153289 CGCCCCACAATCTCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
2193 2631 2.370445 CCGCCCCACAATCTCTCCT 61.370 63.158 0.00 0.00 0.00 3.69
2194 2632 2.190578 CCGCCCCACAATCTCTCC 59.809 66.667 0.00 0.00 0.00 3.71
2195 2633 2.514824 GCCGCCCCACAATCTCTC 60.515 66.667 0.00 0.00 0.00 3.20
2196 2634 4.473520 CGCCGCCCCACAATCTCT 62.474 66.667 0.00 0.00 0.00 3.10
2217 2655 4.504916 CTCTCCTGCTCCGCCGTG 62.505 72.222 0.00 0.00 0.00 4.94
2218 2656 4.742649 TCTCTCCTGCTCCGCCGT 62.743 66.667 0.00 0.00 0.00 5.68
2219 2657 2.790791 AATCTCTCCTGCTCCGCCG 61.791 63.158 0.00 0.00 0.00 6.46
2220 2658 1.227497 CAATCTCTCCTGCTCCGCC 60.227 63.158 0.00 0.00 0.00 6.13
2221 2659 0.809241 CACAATCTCTCCTGCTCCGC 60.809 60.000 0.00 0.00 0.00 5.54
2222 2660 0.179089 CCACAATCTCTCCTGCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
2223 2661 0.179936 CCCACAATCTCTCCTGCTCC 59.820 60.000 0.00 0.00 0.00 4.70
2224 2662 0.179936 CCCCACAATCTCTCCTGCTC 59.820 60.000 0.00 0.00 0.00 4.26
2225 2663 1.919600 GCCCCACAATCTCTCCTGCT 61.920 60.000 0.00 0.00 0.00 4.24
2226 2664 1.452833 GCCCCACAATCTCTCCTGC 60.453 63.158 0.00 0.00 0.00 4.85
2227 2665 0.107312 CTGCCCCACAATCTCTCCTG 60.107 60.000 0.00 0.00 0.00 3.86
2228 2666 1.919600 GCTGCCCCACAATCTCTCCT 61.920 60.000 0.00 0.00 0.00 3.69
2229 2667 1.452833 GCTGCCCCACAATCTCTCC 60.453 63.158 0.00 0.00 0.00 3.71
2230 2668 1.817099 CGCTGCCCCACAATCTCTC 60.817 63.158 0.00 0.00 0.00 3.20
2231 2669 2.270205 CGCTGCCCCACAATCTCT 59.730 61.111 0.00 0.00 0.00 3.10
2232 2670 3.512516 GCGCTGCCCCACAATCTC 61.513 66.667 0.00 0.00 0.00 2.75
2233 2671 3.866379 TTGCGCTGCCCCACAATCT 62.866 57.895 9.73 0.00 0.00 2.40
2234 2672 3.372730 TTGCGCTGCCCCACAATC 61.373 61.111 9.73 0.00 0.00 2.67
2235 2673 3.683937 GTTGCGCTGCCCCACAAT 61.684 61.111 9.73 0.00 0.00 2.71
2242 2680 4.099170 CTGCTCTGTTGCGCTGCC 62.099 66.667 9.73 0.00 35.36 4.85
2243 2681 2.901292 AACTGCTCTGTTGCGCTGC 61.901 57.895 9.73 1.25 35.36 5.25
2244 2682 1.082300 CAACTGCTCTGTTGCGCTG 60.082 57.895 9.73 0.00 40.40 5.18
2245 2683 1.226686 CTCAACTGCTCTGTTGCGCT 61.227 55.000 9.73 0.00 44.83 5.92
2246 2684 1.206072 CTCAACTGCTCTGTTGCGC 59.794 57.895 0.00 0.00 44.83 6.09
2247 2685 1.436600 ATCTCAACTGCTCTGTTGCG 58.563 50.000 12.79 8.45 44.83 4.85
2248 2686 2.810274 TCAATCTCAACTGCTCTGTTGC 59.190 45.455 12.79 0.00 44.83 4.17
2249 2687 3.436015 CCTCAATCTCAACTGCTCTGTTG 59.564 47.826 11.77 11.77 46.09 3.33
2250 2688 3.558746 CCCTCAATCTCAACTGCTCTGTT 60.559 47.826 0.00 0.00 0.00 3.16
2251 2689 2.027377 CCCTCAATCTCAACTGCTCTGT 60.027 50.000 0.00 0.00 0.00 3.41
2252 2690 2.630158 CCCTCAATCTCAACTGCTCTG 58.370 52.381 0.00 0.00 0.00 3.35
2253 2691 1.558756 CCCCTCAATCTCAACTGCTCT 59.441 52.381 0.00 0.00 0.00 4.09
2254 2692 2.016096 GCCCCTCAATCTCAACTGCTC 61.016 57.143 0.00 0.00 0.00 4.26
2255 2693 0.034670 GCCCCTCAATCTCAACTGCT 60.035 55.000 0.00 0.00 0.00 4.24
2256 2694 1.372087 CGCCCCTCAATCTCAACTGC 61.372 60.000 0.00 0.00 0.00 4.40
2257 2695 0.250234 TCGCCCCTCAATCTCAACTG 59.750 55.000 0.00 0.00 0.00 3.16
2258 2696 0.539051 CTCGCCCCTCAATCTCAACT 59.461 55.000 0.00 0.00 0.00 3.16
2259 2697 1.092345 GCTCGCCCCTCAATCTCAAC 61.092 60.000 0.00 0.00 0.00 3.18
2260 2698 1.221840 GCTCGCCCCTCAATCTCAA 59.778 57.895 0.00 0.00 0.00 3.02
2261 2699 1.989508 TGCTCGCCCCTCAATCTCA 60.990 57.895 0.00 0.00 0.00 3.27
2262 2700 1.522580 GTGCTCGCCCCTCAATCTC 60.523 63.158 0.00 0.00 0.00 2.75
2263 2701 1.630126 ATGTGCTCGCCCCTCAATCT 61.630 55.000 0.00 0.00 0.00 2.40
2264 2702 1.153086 ATGTGCTCGCCCCTCAATC 60.153 57.895 0.00 0.00 0.00 2.67
2265 2703 1.153086 GATGTGCTCGCCCCTCAAT 60.153 57.895 0.00 0.00 0.00 2.57
2266 2704 2.244117 GAGATGTGCTCGCCCCTCAA 62.244 60.000 0.00 0.00 33.17 3.02
2267 2705 2.685017 AGATGTGCTCGCCCCTCA 60.685 61.111 0.00 0.00 0.00 3.86
2268 2706 2.107953 GAGATGTGCTCGCCCCTC 59.892 66.667 0.00 0.00 33.17 4.30
2275 2713 1.138883 TGGCGTACGAGATGTGCTC 59.861 57.895 21.65 0.00 40.38 4.26
2276 2714 1.153823 GTGGCGTACGAGATGTGCT 60.154 57.895 21.65 0.00 0.00 4.40
2277 2715 3.384927 GTGGCGTACGAGATGTGC 58.615 61.111 21.65 0.00 0.00 4.57
2320 2758 4.034258 GTGGTCGTCGTGCCTCGA 62.034 66.667 9.29 0.00 46.83 4.04
2326 2764 4.415332 CCTCCCGTGGTCGTCGTG 62.415 72.222 0.00 0.00 35.01 4.35
2329 2767 4.436998 CTGCCTCCCGTGGTCGTC 62.437 72.222 0.00 0.00 35.01 4.20
2330 2768 4.988716 TCTGCCTCCCGTGGTCGT 62.989 66.667 0.00 0.00 35.01 4.34
2331 2769 3.691342 TTCTGCCTCCCGTGGTCG 61.691 66.667 0.00 0.00 0.00 4.79
2332 2770 2.047179 GTTCTGCCTCCCGTGGTC 60.047 66.667 0.00 0.00 0.00 4.02
2333 2771 4.003788 CGTTCTGCCTCCCGTGGT 62.004 66.667 0.00 0.00 0.00 4.16
2335 2773 3.958147 ATGCGTTCTGCCTCCCGTG 62.958 63.158 0.00 0.00 45.60 4.94
2336 2774 3.706373 ATGCGTTCTGCCTCCCGT 61.706 61.111 0.00 0.00 45.60 5.28
2337 2775 3.197790 CATGCGTTCTGCCTCCCG 61.198 66.667 0.00 0.00 45.60 5.14
2338 2776 3.512516 GCATGCGTTCTGCCTCCC 61.513 66.667 0.00 0.00 45.60 4.30
2339 2777 2.437359 AGCATGCGTTCTGCCTCC 60.437 61.111 13.01 0.00 45.60 4.30
2340 2778 2.758089 CCAGCATGCGTTCTGCCTC 61.758 63.158 13.01 0.00 45.60 4.70
2341 2779 2.749044 CCAGCATGCGTTCTGCCT 60.749 61.111 13.01 0.00 45.60 4.75
2342 2780 4.487412 GCCAGCATGCGTTCTGCC 62.487 66.667 13.01 0.00 45.60 4.85
2343 2781 4.487412 GGCCAGCATGCGTTCTGC 62.487 66.667 13.01 11.29 46.70 4.26
2344 2782 4.170062 CGGCCAGCATGCGTTCTG 62.170 66.667 13.01 4.74 31.97 3.02
2431 2869 3.716006 CACAGCACGGCGTTCCAG 61.716 66.667 11.19 3.68 0.00 3.86
2455 2893 2.967076 ATAATGCAGGTCGGCGCG 60.967 61.111 0.00 0.00 36.28 6.86
2456 2894 1.887242 TCATAATGCAGGTCGGCGC 60.887 57.895 0.00 0.00 36.28 6.53
2457 2895 0.809636 TGTCATAATGCAGGTCGGCG 60.810 55.000 0.00 0.00 36.28 6.46
2458 2896 0.940126 CTGTCATAATGCAGGTCGGC 59.060 55.000 0.00 0.00 0.00 5.54
2459 2897 2.315925 ACTGTCATAATGCAGGTCGG 57.684 50.000 0.00 0.00 37.07 4.79
2460 2898 3.780902 TGTACTGTCATAATGCAGGTCG 58.219 45.455 0.00 0.00 37.07 4.79
2461 2899 5.874810 TCTTTGTACTGTCATAATGCAGGTC 59.125 40.000 0.00 0.00 37.07 3.85
2462 2900 5.804639 TCTTTGTACTGTCATAATGCAGGT 58.195 37.500 0.00 0.00 37.07 4.00
2463 2901 5.220739 GCTCTTTGTACTGTCATAATGCAGG 60.221 44.000 0.00 0.00 37.07 4.85
2464 2902 5.352293 TGCTCTTTGTACTGTCATAATGCAG 59.648 40.000 0.00 0.00 38.58 4.41
2465 2903 5.122239 GTGCTCTTTGTACTGTCATAATGCA 59.878 40.000 0.00 0.00 0.00 3.96
2466 2904 5.447818 GGTGCTCTTTGTACTGTCATAATGC 60.448 44.000 0.00 0.00 0.00 3.56
2467 2905 5.643348 TGGTGCTCTTTGTACTGTCATAATG 59.357 40.000 0.00 0.00 0.00 1.90
2468 2906 5.804639 TGGTGCTCTTTGTACTGTCATAAT 58.195 37.500 0.00 0.00 0.00 1.28
2469 2907 5.222079 TGGTGCTCTTTGTACTGTCATAA 57.778 39.130 0.00 0.00 0.00 1.90
2470 2908 4.882842 TGGTGCTCTTTGTACTGTCATA 57.117 40.909 0.00 0.00 0.00 2.15
2504 2942 3.005791 TGGTCTACGGATCTGCATGTATG 59.994 47.826 0.00 0.00 0.00 2.39
2505 2943 3.230976 TGGTCTACGGATCTGCATGTAT 58.769 45.455 0.00 0.00 0.00 2.29
2508 2946 2.827800 ATGGTCTACGGATCTGCATG 57.172 50.000 0.00 0.00 0.00 4.06
2511 2949 4.238514 GTCATTATGGTCTACGGATCTGC 58.761 47.826 0.00 0.00 0.00 4.26
2518 2956 5.413969 TGTAGTCGTCATTATGGTCTACG 57.586 43.478 0.00 0.00 34.99 3.51
2530 2968 1.174078 TCCGGTGCTTGTAGTCGTCA 61.174 55.000 0.00 0.00 0.00 4.35
2533 2971 0.866061 CGATCCGGTGCTTGTAGTCG 60.866 60.000 0.00 0.00 0.00 4.18
2546 2984 1.299773 GCTCCTTCAGCTCGATCCG 60.300 63.158 0.00 0.00 45.83 4.18
2590 3028 0.940991 CAAGTTTTGGCCAGCTTCGC 60.941 55.000 5.11 0.00 0.00 4.70
2593 3031 0.540923 TTGCAAGTTTTGGCCAGCTT 59.459 45.000 5.11 9.48 0.00 3.74
2596 3034 5.807011 GTCTATTATTGCAAGTTTTGGCCAG 59.193 40.000 5.11 0.00 0.00 4.85
2600 3038 6.742718 CGACTGTCTATTATTGCAAGTTTTGG 59.257 38.462 4.94 0.00 0.00 3.28
2610 3048 7.328737 GGTGCTATTACCGACTGTCTATTATTG 59.671 40.741 6.21 0.00 0.00 1.90
2615 3053 3.573110 GGGTGCTATTACCGACTGTCTAT 59.427 47.826 6.21 0.00 41.79 1.98
2696 3543 1.637553 AGTCATGGGATATGGCCATCC 59.362 52.381 24.80 19.81 43.36 3.51
2714 3564 1.352352 CATGGGAGGGACTTGTTGAGT 59.648 52.381 0.00 0.00 41.55 3.41
2730 3580 0.102663 TGGCGCAACATTATGCATGG 59.897 50.000 10.83 1.09 46.76 3.66
2792 3643 0.456628 GCGGGGTACTTCAGAGACTC 59.543 60.000 0.00 0.00 0.00 3.36
2824 3675 2.440501 GTTCCTAATTCATTGTGCGCG 58.559 47.619 0.00 0.00 0.00 6.86
2832 3683 9.136323 GGAGAATTATTGTGGTTCCTAATTCAT 57.864 33.333 16.38 7.67 40.53 2.57
2849 3700 5.211973 TCTAGCACCAGTCTGGAGAATTAT 58.788 41.667 26.18 6.35 40.96 1.28
2857 3708 1.205893 GACCTTCTAGCACCAGTCTGG 59.794 57.143 17.88 17.88 45.02 3.86
2862 3713 3.902881 ATCAAGACCTTCTAGCACCAG 57.097 47.619 0.00 0.00 0.00 4.00
2893 3747 6.022958 AGGTGGTCTTGGGCTTATAATTTTT 58.977 36.000 0.00 0.00 0.00 1.94
2894 3748 5.589831 AGGTGGTCTTGGGCTTATAATTTT 58.410 37.500 0.00 0.00 0.00 1.82
2895 3749 5.206905 AGGTGGTCTTGGGCTTATAATTT 57.793 39.130 0.00 0.00 0.00 1.82
2896 3750 4.881157 AGGTGGTCTTGGGCTTATAATT 57.119 40.909 0.00 0.00 0.00 1.40
2897 3751 4.229582 TGAAGGTGGTCTTGGGCTTATAAT 59.770 41.667 0.00 0.00 35.50 1.28
2898 3752 3.589735 TGAAGGTGGTCTTGGGCTTATAA 59.410 43.478 0.00 0.00 35.50 0.98
2899 3753 3.054655 GTGAAGGTGGTCTTGGGCTTATA 60.055 47.826 0.00 0.00 35.50 0.98
2900 3754 1.992557 TGAAGGTGGTCTTGGGCTTAT 59.007 47.619 0.00 0.00 35.50 1.73
2901 3755 1.073284 GTGAAGGTGGTCTTGGGCTTA 59.927 52.381 0.00 0.00 35.50 3.09
2902 3756 0.178990 GTGAAGGTGGTCTTGGGCTT 60.179 55.000 0.00 0.00 35.50 4.35
2903 3757 1.456287 GTGAAGGTGGTCTTGGGCT 59.544 57.895 0.00 0.00 35.50 5.19
2904 3758 1.966451 CGTGAAGGTGGTCTTGGGC 60.966 63.158 0.00 0.00 35.50 5.36
2905 3759 1.966451 GCGTGAAGGTGGTCTTGGG 60.966 63.158 0.00 0.00 35.50 4.12
2906 3760 0.535102 AAGCGTGAAGGTGGTCTTGG 60.535 55.000 0.00 0.00 35.50 3.61
2907 3761 1.264288 GAAAGCGTGAAGGTGGTCTTG 59.736 52.381 0.00 0.00 35.50 3.02
2908 3762 1.141053 AGAAAGCGTGAAGGTGGTCTT 59.859 47.619 0.00 0.00 38.65 3.01
2909 3763 0.759346 AGAAAGCGTGAAGGTGGTCT 59.241 50.000 0.00 0.00 0.00 3.85
2910 3764 1.531578 GAAGAAAGCGTGAAGGTGGTC 59.468 52.381 0.00 0.00 0.00 4.02
2911 3765 1.141053 AGAAGAAAGCGTGAAGGTGGT 59.859 47.619 0.00 0.00 0.00 4.16
2912 3766 1.532868 CAGAAGAAAGCGTGAAGGTGG 59.467 52.381 0.00 0.00 0.00 4.61
2913 3767 1.069636 GCAGAAGAAAGCGTGAAGGTG 60.070 52.381 0.00 0.00 0.00 4.00
2914 3768 1.230324 GCAGAAGAAAGCGTGAAGGT 58.770 50.000 0.00 0.00 0.00 3.50
2915 3769 1.069636 GTGCAGAAGAAAGCGTGAAGG 60.070 52.381 0.00 0.00 0.00 3.46
2916 3770 1.599071 TGTGCAGAAGAAAGCGTGAAG 59.401 47.619 0.00 0.00 0.00 3.02
2917 3771 1.662517 TGTGCAGAAGAAAGCGTGAA 58.337 45.000 0.00 0.00 0.00 3.18
2918 3772 1.800586 GATGTGCAGAAGAAAGCGTGA 59.199 47.619 0.00 0.00 0.00 4.35
2919 3773 1.802960 AGATGTGCAGAAGAAAGCGTG 59.197 47.619 0.00 0.00 0.00 5.34
2920 3774 2.175878 AGATGTGCAGAAGAAAGCGT 57.824 45.000 0.00 0.00 0.00 5.07
2921 3775 2.225019 ACAAGATGTGCAGAAGAAAGCG 59.775 45.455 0.00 0.00 0.00 4.68
2922 3776 3.911661 ACAAGATGTGCAGAAGAAAGC 57.088 42.857 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.