Multiple sequence alignment - TraesCS3D01G101100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G101100 chr3D 100.000 6820 0 0 1 6820 54371056 54364237 0.000000e+00 12595.0
1 TraesCS3D01G101100 chr3D 100.000 28 0 0 2215 2242 54378280 54378307 1.200000e-02 52.8
2 TraesCS3D01G101100 chr3A 95.817 2008 66 11 3170 5173 65345761 65343768 0.000000e+00 3227.0
3 TraesCS3D01G101100 chr3A 95.300 1085 39 4 2095 3171 65346945 65345865 0.000000e+00 1711.0
4 TraesCS3D01G101100 chr3A 94.359 975 50 3 5850 6820 735198644 735197671 0.000000e+00 1491.0
5 TraesCS3D01G101100 chr3A 92.277 1010 69 6 5816 6820 65311422 65310417 0.000000e+00 1424.0
6 TraesCS3D01G101100 chr3A 92.324 951 44 11 870 1803 65347961 65347023 0.000000e+00 1325.0
7 TraesCS3D01G101100 chr3A 91.286 700 19 5 5173 5833 65343702 65343006 0.000000e+00 917.0
8 TraesCS3D01G101100 chr3A 90.149 335 32 1 143 476 65348578 65348244 1.050000e-117 435.0
9 TraesCS3D01G101100 chr3A 84.426 122 11 2 3144 3265 65355909 65355796 5.590000e-21 113.0
10 TraesCS3D01G101100 chr3B 96.370 1708 55 6 3464 5168 84731487 84729784 0.000000e+00 2804.0
11 TraesCS3D01G101100 chr3B 93.808 1389 49 8 2095 3463 84733186 84731815 0.000000e+00 2054.0
12 TraesCS3D01G101100 chr3B 89.956 916 65 14 645 1552 84734352 84733456 0.000000e+00 1157.0
13 TraesCS3D01G101100 chr3B 95.041 363 16 2 5173 5535 84729727 84729367 2.760000e-158 569.0
14 TraesCS3D01G101100 chr3B 92.523 321 16 5 143 461 84734740 84734426 2.900000e-123 453.0
15 TraesCS3D01G101100 chr3B 92.523 107 7 1 557 662 407105310 407105416 1.180000e-32 152.0
16 TraesCS3D01G101100 chr5D 94.256 975 51 3 5850 6820 499676562 499677535 0.000000e+00 1485.0
17 TraesCS3D01G101100 chr5D 91.111 225 18 2 1869 2091 525668095 525667871 3.090000e-78 303.0
18 TraesCS3D01G101100 chr5D 95.960 99 2 2 558 656 431293825 431293729 7.080000e-35 159.0
19 TraesCS3D01G101100 chr5D 87.597 129 10 6 557 681 228069779 228069653 1.980000e-30 145.0
20 TraesCS3D01G101100 chr7A 94.154 975 53 2 5850 6820 91932011 91931037 0.000000e+00 1482.0
21 TraesCS3D01G101100 chr7A 93.744 975 56 3 5850 6820 695619702 695618729 0.000000e+00 1458.0
22 TraesCS3D01G101100 chr5A 93.949 975 55 2 5850 6820 548683031 548684005 0.000000e+00 1471.0
23 TraesCS3D01G101100 chr5A 93.545 976 57 4 5850 6820 53371407 53372381 0.000000e+00 1448.0
24 TraesCS3D01G101100 chr5A 88.797 241 22 5 1859 2097 436628543 436628306 2.410000e-74 291.0
25 TraesCS3D01G101100 chr6B 93.846 975 54 3 5850 6820 125164494 125163522 0.000000e+00 1463.0
26 TraesCS3D01G101100 chr4D 93.463 979 56 5 5850 6820 397173927 397172949 0.000000e+00 1447.0
27 TraesCS3D01G101100 chr4D 93.333 225 13 2 1874 2096 76023297 76023521 1.420000e-86 331.0
28 TraesCS3D01G101100 chr4D 90.833 240 19 3 1859 2096 461492286 461492048 1.100000e-82 318.0
29 TraesCS3D01G101100 chr4D 89.121 239 24 2 1859 2096 417622902 417623139 5.170000e-76 296.0
30 TraesCS3D01G101100 chr7D 91.304 230 19 1 1869 2097 614375914 614376143 5.140000e-81 313.0
31 TraesCS3D01G101100 chr7D 98.958 96 0 1 560 655 22964257 22964351 3.270000e-38 171.0
32 TraesCS3D01G101100 chr7D 96.078 102 3 1 558 659 5068084 5068184 1.520000e-36 165.0
33 TraesCS3D01G101100 chr2D 89.754 244 23 2 1859 2101 589493914 589494156 1.850000e-80 311.0
34 TraesCS3D01G101100 chr2D 96.000 100 3 1 557 655 164992771 164992672 1.970000e-35 161.0
35 TraesCS3D01G101100 chr2D 95.050 101 3 2 559 658 217496992 217496893 2.550000e-34 158.0
36 TraesCS3D01G101100 chr7B 88.750 240 26 1 1859 2097 702171610 702171849 6.690000e-75 292.0
37 TraesCS3D01G101100 chr1A 88.211 246 28 1 1859 2103 352138382 352138137 6.690000e-75 292.0
38 TraesCS3D01G101100 chr6D 100.000 88 0 0 560 647 78083079 78083166 5.470000e-36 163.0
39 TraesCS3D01G101100 chr4B 95.918 98 4 0 560 657 106975942 106975845 7.080000e-35 159.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G101100 chr3D 54364237 54371056 6819 True 12595.0 12595 100.0000 1 6820 1 chr3D.!!$R1 6819
1 TraesCS3D01G101100 chr3A 65343006 65348578 5572 True 1523.0 3227 92.9752 143 5833 5 chr3A.!!$R4 5690
2 TraesCS3D01G101100 chr3A 735197671 735198644 973 True 1491.0 1491 94.3590 5850 6820 1 chr3A.!!$R3 970
3 TraesCS3D01G101100 chr3A 65310417 65311422 1005 True 1424.0 1424 92.2770 5816 6820 1 chr3A.!!$R1 1004
4 TraesCS3D01G101100 chr3B 84729367 84734740 5373 True 1407.4 2804 93.5396 143 5535 5 chr3B.!!$R1 5392
5 TraesCS3D01G101100 chr5D 499676562 499677535 973 False 1485.0 1485 94.2560 5850 6820 1 chr5D.!!$F1 970
6 TraesCS3D01G101100 chr7A 91931037 91932011 974 True 1482.0 1482 94.1540 5850 6820 1 chr7A.!!$R1 970
7 TraesCS3D01G101100 chr7A 695618729 695619702 973 True 1458.0 1458 93.7440 5850 6820 1 chr7A.!!$R2 970
8 TraesCS3D01G101100 chr5A 548683031 548684005 974 False 1471.0 1471 93.9490 5850 6820 1 chr5A.!!$F2 970
9 TraesCS3D01G101100 chr5A 53371407 53372381 974 False 1448.0 1448 93.5450 5850 6820 1 chr5A.!!$F1 970
10 TraesCS3D01G101100 chr6B 125163522 125164494 972 True 1463.0 1463 93.8460 5850 6820 1 chr6B.!!$R1 970
11 TraesCS3D01G101100 chr4D 397172949 397173927 978 True 1447.0 1447 93.4630 5850 6820 1 chr4D.!!$R1 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1044 0.098728 CCCATGTTCGCGATGTTTCC 59.901 55.000 10.88 0.0 0.00 3.13 F
2094 2197 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.0 34.45 2.73 F
2343 2453 0.326618 ATAGGTCTGGTGGAGGTGGG 60.327 60.000 0.00 0.0 0.00 4.61 F
2997 3110 0.329596 ACATCTCAAACCTGCCTCCC 59.670 55.000 0.00 0.0 0.00 4.30 F
3928 4490 1.028905 TGTTTAGTGCTGTGGTTGCC 58.971 50.000 0.00 0.0 0.00 4.52 F
5104 5673 1.351350 GCTTTGGAGAACAGGTAGGGT 59.649 52.381 0.00 0.0 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 2635 0.034960 GTTCTCTTGGCCTCTTCCCC 60.035 60.000 3.32 0.00 0.00 4.81 R
3413 3648 1.796459 ACCACACGTAAACTTCGCATC 59.204 47.619 0.00 0.00 0.00 3.91 R
4281 4848 3.066621 GCAACAACCAGACAAACTCATGA 59.933 43.478 0.00 0.00 0.00 3.07 R
4611 5178 1.198867 CTCCATCTCTGCGTCTATCCG 59.801 57.143 0.00 0.00 0.00 4.18 R
5635 6309 0.025001 GATGATTCAACGTCCACGCG 59.975 55.000 3.53 3.53 44.43 6.01 R
6594 7277 0.606944 GGTGCGACCAATTACCACCA 60.607 55.000 3.43 0.00 44.07 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.333177 TTTTTCCATCGGTTGGGTGG 58.667 50.000 5.31 0.00 46.45 4.61
36 37 0.540830 TTTTCCATCGGTTGGGTGGG 60.541 55.000 5.31 0.00 46.45 4.61
37 38 3.577334 TTCCATCGGTTGGGTGGGC 62.577 63.158 5.31 0.00 46.45 5.36
44 45 4.941309 GTTGGGTGGGCGGTTCGT 62.941 66.667 0.00 0.00 0.00 3.85
45 46 4.939368 TTGGGTGGGCGGTTCGTG 62.939 66.667 0.00 0.00 0.00 4.35
49 50 3.723348 GTGGGCGGTTCGTGCTTC 61.723 66.667 0.00 0.00 0.00 3.86
50 51 3.936203 TGGGCGGTTCGTGCTTCT 61.936 61.111 0.00 0.00 0.00 2.85
51 52 2.668550 GGGCGGTTCGTGCTTCTT 60.669 61.111 0.00 0.00 0.00 2.52
52 53 2.258726 GGGCGGTTCGTGCTTCTTT 61.259 57.895 0.00 0.00 0.00 2.52
53 54 1.652563 GGCGGTTCGTGCTTCTTTT 59.347 52.632 0.00 0.00 0.00 2.27
54 55 0.385598 GGCGGTTCGTGCTTCTTTTC 60.386 55.000 0.00 0.00 0.00 2.29
55 56 0.306533 GCGGTTCGTGCTTCTTTTCA 59.693 50.000 0.00 0.00 0.00 2.69
56 57 1.268335 GCGGTTCGTGCTTCTTTTCAA 60.268 47.619 0.00 0.00 0.00 2.69
57 58 2.793237 GCGGTTCGTGCTTCTTTTCAAA 60.793 45.455 0.00 0.00 0.00 2.69
58 59 3.430931 CGGTTCGTGCTTCTTTTCAAAA 58.569 40.909 0.00 0.00 0.00 2.44
59 60 4.041723 CGGTTCGTGCTTCTTTTCAAAAT 58.958 39.130 0.00 0.00 0.00 1.82
60 61 4.146443 CGGTTCGTGCTTCTTTTCAAAATC 59.854 41.667 0.00 0.00 0.00 2.17
61 62 5.281727 GGTTCGTGCTTCTTTTCAAAATCT 58.718 37.500 0.00 0.00 0.00 2.40
62 63 5.748630 GGTTCGTGCTTCTTTTCAAAATCTT 59.251 36.000 0.00 0.00 0.00 2.40
63 64 6.255670 GGTTCGTGCTTCTTTTCAAAATCTTT 59.744 34.615 0.00 0.00 0.00 2.52
64 65 6.810888 TCGTGCTTCTTTTCAAAATCTTTG 57.189 33.333 0.00 0.00 0.00 2.77
65 66 6.559810 TCGTGCTTCTTTTCAAAATCTTTGA 58.440 32.000 0.00 0.00 0.00 2.69
66 67 6.692681 TCGTGCTTCTTTTCAAAATCTTTGAG 59.307 34.615 2.39 0.00 0.00 3.02
67 68 6.074676 CGTGCTTCTTTTCAAAATCTTTGAGG 60.075 38.462 2.39 0.00 0.00 3.86
68 69 5.754890 TGCTTCTTTTCAAAATCTTTGAGGC 59.245 36.000 2.39 0.00 0.00 4.70
69 70 5.987953 GCTTCTTTTCAAAATCTTTGAGGCT 59.012 36.000 2.39 0.00 0.00 4.58
70 71 7.147976 GCTTCTTTTCAAAATCTTTGAGGCTA 58.852 34.615 2.39 0.00 0.00 3.93
71 72 7.653311 GCTTCTTTTCAAAATCTTTGAGGCTAA 59.347 33.333 2.39 0.00 0.00 3.09
72 73 9.702494 CTTCTTTTCAAAATCTTTGAGGCTAAT 57.298 29.630 2.39 0.00 0.00 1.73
73 74 9.696917 TTCTTTTCAAAATCTTTGAGGCTAATC 57.303 29.630 2.39 0.00 0.00 1.75
74 75 9.082313 TCTTTTCAAAATCTTTGAGGCTAATCT 57.918 29.630 2.39 0.00 0.00 2.40
77 78 9.520515 TTTCAAAATCTTTGAGGCTAATCTAGT 57.479 29.630 2.39 0.00 0.00 2.57
78 79 9.520515 TTCAAAATCTTTGAGGCTAATCTAGTT 57.479 29.630 2.39 0.00 0.00 2.24
79 80 9.520515 TCAAAATCTTTGAGGCTAATCTAGTTT 57.479 29.630 0.00 0.00 0.00 2.66
83 84 8.614469 ATCTTTGAGGCTAATCTAGTTTATGC 57.386 34.615 0.00 0.00 0.00 3.14
84 85 7.564793 TCTTTGAGGCTAATCTAGTTTATGCA 58.435 34.615 0.00 0.00 0.00 3.96
85 86 7.712639 TCTTTGAGGCTAATCTAGTTTATGCAG 59.287 37.037 0.00 0.00 0.00 4.41
86 87 5.858381 TGAGGCTAATCTAGTTTATGCAGG 58.142 41.667 0.00 0.00 0.00 4.85
87 88 5.602561 TGAGGCTAATCTAGTTTATGCAGGA 59.397 40.000 0.00 0.00 0.00 3.86
88 89 6.270927 TGAGGCTAATCTAGTTTATGCAGGAT 59.729 38.462 0.00 0.00 0.00 3.24
89 90 7.084268 AGGCTAATCTAGTTTATGCAGGATT 57.916 36.000 0.00 0.00 0.00 3.01
90 91 7.521669 AGGCTAATCTAGTTTATGCAGGATTT 58.478 34.615 0.00 0.00 0.00 2.17
91 92 8.001292 AGGCTAATCTAGTTTATGCAGGATTTT 58.999 33.333 0.00 0.00 0.00 1.82
92 93 8.293157 GGCTAATCTAGTTTATGCAGGATTTTC 58.707 37.037 0.00 0.00 0.00 2.29
93 94 9.061435 GCTAATCTAGTTTATGCAGGATTTTCT 57.939 33.333 0.00 0.00 0.00 2.52
96 97 9.692325 AATCTAGTTTATGCAGGATTTTCTTCT 57.308 29.630 0.00 0.00 0.00 2.85
130 131 9.901172 TTTTCTAGACAAAATTCTATAGTCCCC 57.099 33.333 0.00 0.00 0.00 4.81
131 132 7.613551 TCTAGACAAAATTCTATAGTCCCCC 57.386 40.000 0.00 0.00 0.00 5.40
162 163 6.824196 CCCAGAAAAGGTCTTCTATAGTTTCC 59.176 42.308 0.00 0.00 33.81 3.13
182 183 5.614324 TCCTCACTAATGTTATGGTGGAG 57.386 43.478 0.00 0.00 0.00 3.86
206 207 5.229423 TGCAGATATGCAAAAGGTCAAAAC 58.771 37.500 13.63 0.00 42.40 2.43
231 232 2.169769 AGACACCGACTTCAAAGAACCA 59.830 45.455 0.00 0.00 0.00 3.67
240 241 5.007234 CGACTTCAAAGAACCACATGTAACA 59.993 40.000 0.00 0.00 0.00 2.41
302 303 6.732896 TCTAGACATCTTCCCTAACATTCC 57.267 41.667 0.00 0.00 0.00 3.01
388 389 7.627088 GCACTAGTCTTGTTCATTAATGCATGT 60.627 37.037 10.76 0.00 0.00 3.21
405 406 6.546972 TGCATGTCGTGTAAGTGAAAAATA 57.453 33.333 0.00 0.00 0.00 1.40
407 408 7.589395 TGCATGTCGTGTAAGTGAAAAATATT 58.411 30.769 0.00 0.00 0.00 1.28
409 410 8.365210 GCATGTCGTGTAAGTGAAAAATATTTG 58.635 33.333 0.39 0.00 0.00 2.32
497 499 3.985019 TTTGCGGGGAGATTAACTACA 57.015 42.857 0.00 0.00 0.00 2.74
498 500 3.985019 TTGCGGGGAGATTAACTACAA 57.015 42.857 0.00 0.00 0.00 2.41
499 501 3.536956 TGCGGGGAGATTAACTACAAG 57.463 47.619 0.00 0.00 0.00 3.16
500 502 2.835764 TGCGGGGAGATTAACTACAAGT 59.164 45.455 0.00 0.00 0.00 3.16
501 503 3.262405 TGCGGGGAGATTAACTACAAGTT 59.738 43.478 0.00 0.00 41.97 2.66
502 504 4.259356 GCGGGGAGATTAACTACAAGTTT 58.741 43.478 0.00 0.00 39.51 2.66
503 505 4.331992 GCGGGGAGATTAACTACAAGTTTC 59.668 45.833 0.00 0.00 39.51 2.78
504 506 5.731591 CGGGGAGATTAACTACAAGTTTCT 58.268 41.667 0.00 0.00 39.51 2.52
505 507 6.171213 CGGGGAGATTAACTACAAGTTTCTT 58.829 40.000 0.00 0.00 39.51 2.52
506 508 7.325694 CGGGGAGATTAACTACAAGTTTCTTA 58.674 38.462 0.00 0.00 39.51 2.10
507 509 7.820872 CGGGGAGATTAACTACAAGTTTCTTAA 59.179 37.037 0.00 0.00 39.51 1.85
560 562 5.530712 TCACGGTTGCTATATTGCGTTATA 58.469 37.500 4.70 0.00 35.36 0.98
561 563 5.403166 TCACGGTTGCTATATTGCGTTATAC 59.597 40.000 4.70 0.00 35.36 1.47
562 564 5.404366 CACGGTTGCTATATTGCGTTATACT 59.596 40.000 4.70 0.00 35.36 2.12
563 565 5.632347 ACGGTTGCTATATTGCGTTATACTC 59.368 40.000 4.70 0.00 35.36 2.59
564 566 5.061808 CGGTTGCTATATTGCGTTATACTCC 59.938 44.000 4.70 0.00 35.36 3.85
565 567 5.350640 GGTTGCTATATTGCGTTATACTCCC 59.649 44.000 4.70 0.00 35.36 4.30
566 568 5.995565 TGCTATATTGCGTTATACTCCCT 57.004 39.130 4.70 0.00 35.36 4.20
567 569 5.962433 TGCTATATTGCGTTATACTCCCTC 58.038 41.667 4.70 0.00 35.36 4.30
568 570 5.105473 TGCTATATTGCGTTATACTCCCTCC 60.105 44.000 4.70 0.00 35.36 4.30
569 571 2.814280 ATTGCGTTATACTCCCTCCG 57.186 50.000 0.00 0.00 0.00 4.63
570 572 1.477553 TTGCGTTATACTCCCTCCGT 58.522 50.000 0.00 0.00 0.00 4.69
571 573 1.027357 TGCGTTATACTCCCTCCGTC 58.973 55.000 0.00 0.00 0.00 4.79
572 574 0.313357 GCGTTATACTCCCTCCGTCC 59.687 60.000 0.00 0.00 0.00 4.79
573 575 0.957362 CGTTATACTCCCTCCGTCCC 59.043 60.000 0.00 0.00 0.00 4.46
574 576 1.751733 CGTTATACTCCCTCCGTCCCA 60.752 57.143 0.00 0.00 0.00 4.37
575 577 2.606378 GTTATACTCCCTCCGTCCCAT 58.394 52.381 0.00 0.00 0.00 4.00
576 578 3.771216 GTTATACTCCCTCCGTCCCATA 58.229 50.000 0.00 0.00 0.00 2.74
577 579 4.154942 GTTATACTCCCTCCGTCCCATAA 58.845 47.826 0.00 0.00 0.00 1.90
578 580 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
579 581 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
580 582 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
581 583 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
582 584 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
583 585 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
584 586 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
585 587 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
586 588 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
587 589 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
588 590 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
589 591 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
590 592 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
591 593 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
592 594 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
619 621 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
620 622 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
621 623 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
622 624 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
623 625 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
624 626 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
625 627 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
626 628 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
627 629 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
630 632 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
631 633 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
632 634 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
633 635 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
634 636 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
635 637 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
636 638 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
637 639 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
638 640 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
639 641 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
640 642 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
641 643 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
642 644 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
643 645 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
699 701 7.858382 AGTCGTATAGAATCGAAACAGATCAAG 59.142 37.037 0.00 0.00 37.81 3.02
745 774 9.868277 ACACAAAAATGTTTATTGAGAAGACAA 57.132 25.926 0.00 0.00 0.00 3.18
825 878 4.134623 GTGGGCTTCACACGTCAA 57.865 55.556 5.99 0.00 45.39 3.18
826 879 2.399856 GTGGGCTTCACACGTCAAA 58.600 52.632 5.99 0.00 45.39 2.69
827 880 0.736053 GTGGGCTTCACACGTCAAAA 59.264 50.000 5.99 0.00 45.39 2.44
867 920 4.347453 GCCAAACGCTGCACCAGG 62.347 66.667 0.00 0.00 31.21 4.45
934 989 2.125512 GGAGTCGGTCAGCGCAAT 60.126 61.111 11.47 0.00 0.00 3.56
937 992 2.506217 GTCGGTCAGCGCAATCGA 60.506 61.111 11.47 12.57 38.10 3.59
989 1044 0.098728 CCCATGTTCGCGATGTTTCC 59.901 55.000 10.88 0.00 0.00 3.13
991 1046 1.086696 CATGTTCGCGATGTTTCCCT 58.913 50.000 10.88 0.00 0.00 4.20
1027 1082 2.711542 CGACTGTTTTGCCCTAATCCT 58.288 47.619 0.00 0.00 0.00 3.24
1216 1280 0.790814 CGGTTTTGTCTCCTCTTCGC 59.209 55.000 0.00 0.00 0.00 4.70
1328 1395 2.363975 TGGCGGTGGTGGAGGATAC 61.364 63.158 0.00 0.00 0.00 2.24
1333 1400 1.400530 GGTGGTGGAGGATACGGAGG 61.401 65.000 0.00 0.00 46.39 4.30
1334 1401 1.760875 TGGTGGAGGATACGGAGGC 60.761 63.158 0.00 0.00 46.39 4.70
1377 1447 4.791069 GTGGCGGGAGAGGGGGTA 62.791 72.222 0.00 0.00 0.00 3.69
1404 1474 4.208686 GAGGAGGCTACGGCGGTG 62.209 72.222 13.24 4.20 39.81 4.94
1407 1477 4.814294 GAGGCTACGGCGGTGGTG 62.814 72.222 13.24 0.00 39.81 4.17
1526 1602 1.668419 CTCTAGGATTTGGCGTTGGG 58.332 55.000 0.00 0.00 0.00 4.12
1561 1637 2.354821 GCCGTTGTCTTCTGAACTTGTT 59.645 45.455 0.00 0.00 0.00 2.83
1562 1638 3.558418 GCCGTTGTCTTCTGAACTTGTTA 59.442 43.478 0.00 0.00 0.00 2.41
1567 1643 4.072131 TGTCTTCTGAACTTGTTATGGGC 58.928 43.478 0.00 0.00 0.00 5.36
1577 1653 4.352893 ACTTGTTATGGGCATTTAGGCTT 58.647 39.130 0.00 0.00 43.56 4.35
1580 1656 3.031013 GTTATGGGCATTTAGGCTTGGT 58.969 45.455 0.00 0.00 43.56 3.67
1593 1669 4.640771 AGGCTTGGTAGAACTTTCATGA 57.359 40.909 0.00 0.00 0.00 3.07
1647 1724 5.473039 CCTTGACTGGAATTTCAAACATCC 58.527 41.667 0.00 0.00 31.41 3.51
1692 1771 4.410228 TCAACTTCTGCTAGATGCCCTATT 59.590 41.667 0.00 0.00 42.00 1.73
1763 1844 3.181476 ACATTCGAAAATATTGCTGGGCC 60.181 43.478 0.00 0.00 0.00 5.80
1778 1859 4.289410 TGCTGGGCCATATGTTGATATACT 59.711 41.667 6.72 0.00 0.00 2.12
1786 1867 7.595502 GGCCATATGTTGATATACTAGCGTATC 59.404 40.741 0.00 7.64 37.50 2.24
1807 1888 1.910671 TGCCCTGGTTATTTACTCCGT 59.089 47.619 0.00 0.00 0.00 4.69
1859 1962 8.247562 AGAGCATGCATTTAATTTACGGTTTTA 58.752 29.630 21.98 0.00 0.00 1.52
1860 1963 8.180317 AGCATGCATTTAATTTACGGTTTTAC 57.820 30.769 21.98 0.00 0.00 2.01
1861 1964 8.032451 AGCATGCATTTAATTTACGGTTTTACT 58.968 29.630 21.98 0.00 0.00 2.24
1862 1965 8.652463 GCATGCATTTAATTTACGGTTTTACTT 58.348 29.630 14.21 0.00 0.00 2.24
1864 1967 8.745464 TGCATTTAATTTACGGTTTTACTTCC 57.255 30.769 0.00 0.00 0.00 3.46
1865 1968 8.358148 TGCATTTAATTTACGGTTTTACTTCCA 58.642 29.630 0.00 0.00 0.00 3.53
1866 1969 8.641155 GCATTTAATTTACGGTTTTACTTCCAC 58.359 33.333 0.00 0.00 0.00 4.02
1867 1970 9.902196 CATTTAATTTACGGTTTTACTTCCACT 57.098 29.630 0.00 0.00 0.00 4.00
1868 1971 9.902196 ATTTAATTTACGGTTTTACTTCCACTG 57.098 29.630 0.00 0.00 0.00 3.66
1869 1972 6.947644 AATTTACGGTTTTACTTCCACTGT 57.052 33.333 0.00 0.00 34.36 3.55
1870 1973 5.989551 TTTACGGTTTTACTTCCACTGTC 57.010 39.130 0.00 0.00 32.21 3.51
1871 1974 2.842457 ACGGTTTTACTTCCACTGTCC 58.158 47.619 0.00 0.00 0.00 4.02
1872 1975 1.796459 CGGTTTTACTTCCACTGTCCG 59.204 52.381 0.00 0.00 0.00 4.79
1873 1976 2.148768 GGTTTTACTTCCACTGTCCGG 58.851 52.381 0.00 0.00 0.00 5.14
1874 1977 2.148768 GTTTTACTTCCACTGTCCGGG 58.851 52.381 0.00 0.00 0.00 5.73
1875 1978 1.426751 TTTACTTCCACTGTCCGGGT 58.573 50.000 0.00 0.00 0.00 5.28
1876 1979 1.426751 TTACTTCCACTGTCCGGGTT 58.573 50.000 0.00 0.00 0.00 4.11
1877 1980 1.426751 TACTTCCACTGTCCGGGTTT 58.573 50.000 0.00 0.00 0.00 3.27
1878 1981 1.426751 ACTTCCACTGTCCGGGTTTA 58.573 50.000 0.00 0.00 0.00 2.01
1879 1982 1.982958 ACTTCCACTGTCCGGGTTTAT 59.017 47.619 0.00 0.00 0.00 1.40
1880 1983 2.374170 ACTTCCACTGTCCGGGTTTATT 59.626 45.455 0.00 0.00 0.00 1.40
1881 1984 3.583966 ACTTCCACTGTCCGGGTTTATTA 59.416 43.478 0.00 0.00 0.00 0.98
1882 1985 3.899052 TCCACTGTCCGGGTTTATTAG 57.101 47.619 0.00 0.00 0.00 1.73
1883 1986 3.443052 TCCACTGTCCGGGTTTATTAGA 58.557 45.455 0.00 0.00 0.00 2.10
1884 1987 3.196254 TCCACTGTCCGGGTTTATTAGAC 59.804 47.826 0.00 0.00 0.00 2.59
1885 1988 3.528532 CACTGTCCGGGTTTATTAGACC 58.471 50.000 0.00 0.00 36.41 3.85
1899 2002 9.020731 GGTTTATTAGACCCTCTTTCATTTTGA 57.979 33.333 0.00 0.00 0.00 2.69
1901 2004 6.765915 ATTAGACCCTCTTTCATTTTGAGC 57.234 37.500 0.00 0.00 0.00 4.26
1902 2005 3.425659 AGACCCTCTTTCATTTTGAGCC 58.574 45.455 0.00 0.00 0.00 4.70
1903 2006 3.157087 GACCCTCTTTCATTTTGAGCCA 58.843 45.455 0.00 0.00 0.00 4.75
1904 2007 3.573967 GACCCTCTTTCATTTTGAGCCAA 59.426 43.478 0.00 0.00 0.00 4.52
1905 2008 3.966665 ACCCTCTTTCATTTTGAGCCAAA 59.033 39.130 0.00 0.00 0.00 3.28
1906 2009 4.039609 ACCCTCTTTCATTTTGAGCCAAAG 59.960 41.667 1.52 0.00 34.72 2.77
1907 2010 4.039609 CCCTCTTTCATTTTGAGCCAAAGT 59.960 41.667 1.52 0.00 34.72 2.66
1908 2011 5.453762 CCCTCTTTCATTTTGAGCCAAAGTT 60.454 40.000 1.52 0.00 34.72 2.66
1909 2012 6.051074 CCTCTTTCATTTTGAGCCAAAGTTT 58.949 36.000 1.52 0.00 34.72 2.66
1910 2013 6.018507 CCTCTTTCATTTTGAGCCAAAGTTTG 60.019 38.462 8.73 8.73 34.72 2.93
1911 2014 6.638610 TCTTTCATTTTGAGCCAAAGTTTGA 58.361 32.000 17.33 0.00 34.72 2.69
1912 2015 6.534793 TCTTTCATTTTGAGCCAAAGTTTGAC 59.465 34.615 17.33 5.39 34.72 3.18
1913 2016 4.692228 TCATTTTGAGCCAAAGTTTGACC 58.308 39.130 17.33 7.54 34.72 4.02
1914 2017 4.161189 TCATTTTGAGCCAAAGTTTGACCA 59.839 37.500 17.33 8.50 34.72 4.02
1915 2018 4.751767 TTTTGAGCCAAAGTTTGACCAT 57.248 36.364 17.33 0.00 34.72 3.55
1916 2019 3.731652 TTGAGCCAAAGTTTGACCATG 57.268 42.857 17.33 0.94 0.00 3.66
1917 2020 2.942804 TGAGCCAAAGTTTGACCATGA 58.057 42.857 17.33 0.00 0.00 3.07
1918 2021 3.295093 TGAGCCAAAGTTTGACCATGAA 58.705 40.909 17.33 0.00 0.00 2.57
1919 2022 3.896888 TGAGCCAAAGTTTGACCATGAAT 59.103 39.130 17.33 0.00 0.00 2.57
1920 2023 4.344679 TGAGCCAAAGTTTGACCATGAATT 59.655 37.500 17.33 0.00 0.00 2.17
1921 2024 5.163322 TGAGCCAAAGTTTGACCATGAATTT 60.163 36.000 17.33 0.00 0.00 1.82
1922 2025 6.041409 TGAGCCAAAGTTTGACCATGAATTTA 59.959 34.615 17.33 0.00 0.00 1.40
1923 2026 6.825610 AGCCAAAGTTTGACCATGAATTTAA 58.174 32.000 17.33 0.00 0.00 1.52
1924 2027 6.930722 AGCCAAAGTTTGACCATGAATTTAAG 59.069 34.615 17.33 0.00 0.00 1.85
1925 2028 6.705825 GCCAAAGTTTGACCATGAATTTAAGT 59.294 34.615 17.33 0.00 0.00 2.24
1926 2029 7.870445 GCCAAAGTTTGACCATGAATTTAAGTA 59.130 33.333 17.33 0.00 0.00 2.24
1927 2030 9.757227 CCAAAGTTTGACCATGAATTTAAGTAA 57.243 29.630 17.33 0.00 0.00 2.24
1970 2073 9.764870 GTAACGAAAACTATTCCATAGAAAACC 57.235 33.333 0.00 0.00 35.09 3.27
1971 2074 8.631480 AACGAAAACTATTCCATAGAAAACCT 57.369 30.769 0.00 0.00 35.09 3.50
1972 2075 8.265165 ACGAAAACTATTCCATAGAAAACCTC 57.735 34.615 0.00 0.00 35.09 3.85
1973 2076 8.101419 ACGAAAACTATTCCATAGAAAACCTCT 58.899 33.333 0.00 0.00 35.09 3.69
1974 2077 8.947115 CGAAAACTATTCCATAGAAAACCTCTT 58.053 33.333 0.00 0.00 35.09 2.85
1977 2080 9.807921 AAACTATTCCATAGAAAACCTCTTTCA 57.192 29.630 0.00 0.00 35.09 2.69
1978 2081 9.807921 AACTATTCCATAGAAAACCTCTTTCAA 57.192 29.630 0.00 0.00 35.09 2.69
1979 2082 9.807921 ACTATTCCATAGAAAACCTCTTTCAAA 57.192 29.630 0.00 0.00 35.09 2.69
1983 2086 9.581289 TTCCATAGAAAACCTCTTTCAAATACA 57.419 29.630 0.52 0.00 35.41 2.29
1984 2087 9.581289 TCCATAGAAAACCTCTTTCAAATACAA 57.419 29.630 0.52 0.00 35.41 2.41
1989 2092 8.923270 AGAAAACCTCTTTCAAATACAAATCCA 58.077 29.630 0.52 0.00 0.00 3.41
1990 2093 9.541143 GAAAACCTCTTTCAAATACAAATCCAA 57.459 29.630 0.00 0.00 0.00 3.53
1991 2094 8.887036 AAACCTCTTTCAAATACAAATCCAAC 57.113 30.769 0.00 0.00 0.00 3.77
1992 2095 7.595819 ACCTCTTTCAAATACAAATCCAACA 57.404 32.000 0.00 0.00 0.00 3.33
1993 2096 8.017418 ACCTCTTTCAAATACAAATCCAACAA 57.983 30.769 0.00 0.00 0.00 2.83
1994 2097 8.650490 ACCTCTTTCAAATACAAATCCAACAAT 58.350 29.630 0.00 0.00 0.00 2.71
2008 2111 9.289303 CAAATCCAACAATATACTTTGTGTAGC 57.711 33.333 0.00 0.00 39.68 3.58
2009 2112 8.574251 AATCCAACAATATACTTTGTGTAGCA 57.426 30.769 0.00 0.00 39.68 3.49
2010 2113 8.752005 ATCCAACAATATACTTTGTGTAGCAT 57.248 30.769 0.00 0.00 39.68 3.79
2011 2114 9.845740 ATCCAACAATATACTTTGTGTAGCATA 57.154 29.630 0.00 0.00 39.68 3.14
2012 2115 9.845740 TCCAACAATATACTTTGTGTAGCATAT 57.154 29.630 0.00 0.00 39.68 1.78
2048 2151 9.777297 ATTTTTAGTTAAATGCATGGTCAAACT 57.223 25.926 0.00 8.55 0.00 2.66
2049 2152 9.606631 TTTTTAGTTAAATGCATGGTCAAACTT 57.393 25.926 0.00 0.00 0.00 2.66
2050 2153 8.586570 TTTAGTTAAATGCATGGTCAAACTTG 57.413 30.769 0.00 0.00 0.00 3.16
2051 2154 5.540911 AGTTAAATGCATGGTCAAACTTGG 58.459 37.500 0.00 0.00 0.00 3.61
2052 2155 5.304101 AGTTAAATGCATGGTCAAACTTGGA 59.696 36.000 0.00 0.00 0.00 3.53
2053 2156 4.895668 AAATGCATGGTCAAACTTGGAT 57.104 36.364 0.00 0.00 0.00 3.41
2054 2157 4.460948 AATGCATGGTCAAACTTGGATC 57.539 40.909 0.00 0.00 0.00 3.36
2055 2158 2.170166 TGCATGGTCAAACTTGGATCC 58.830 47.619 4.20 4.20 0.00 3.36
2056 2159 2.170166 GCATGGTCAAACTTGGATCCA 58.830 47.619 11.44 11.44 0.00 3.41
2057 2160 2.165030 GCATGGTCAAACTTGGATCCAG 59.835 50.000 15.53 11.69 31.67 3.86
2058 2161 3.689347 CATGGTCAAACTTGGATCCAGA 58.311 45.455 15.53 5.48 31.67 3.86
2059 2162 3.874383 TGGTCAAACTTGGATCCAGAA 57.126 42.857 15.53 0.00 0.00 3.02
2060 2163 4.387026 TGGTCAAACTTGGATCCAGAAT 57.613 40.909 15.53 1.31 0.00 2.40
2061 2164 5.512942 TGGTCAAACTTGGATCCAGAATA 57.487 39.130 15.53 0.00 0.00 1.75
2062 2165 5.253330 TGGTCAAACTTGGATCCAGAATAC 58.747 41.667 15.53 9.58 0.00 1.89
2063 2166 5.222027 TGGTCAAACTTGGATCCAGAATACA 60.222 40.000 15.53 5.95 0.00 2.29
2064 2167 5.710099 GGTCAAACTTGGATCCAGAATACAA 59.290 40.000 15.53 0.00 35.74 2.41
2065 2168 6.378280 GGTCAAACTTGGATCCAGAATACAAT 59.622 38.462 15.53 0.00 37.57 2.71
2066 2169 7.253422 GTCAAACTTGGATCCAGAATACAATG 58.747 38.462 15.53 7.65 37.57 2.82
2067 2170 6.377996 TCAAACTTGGATCCAGAATACAATGG 59.622 38.462 15.53 0.00 37.57 3.16
2068 2171 4.796606 ACTTGGATCCAGAATACAATGGG 58.203 43.478 15.53 0.00 37.57 4.00
2069 2172 3.882102 TGGATCCAGAATACAATGGGG 57.118 47.619 11.44 0.00 37.19 4.96
2070 2173 2.158475 TGGATCCAGAATACAATGGGGC 60.158 50.000 11.44 0.00 37.19 5.80
2071 2174 2.519013 GATCCAGAATACAATGGGGCC 58.481 52.381 0.00 0.00 37.19 5.80
2072 2175 1.607225 TCCAGAATACAATGGGGCCT 58.393 50.000 0.84 0.00 37.19 5.19
2073 2176 2.782922 TCCAGAATACAATGGGGCCTA 58.217 47.619 0.84 0.00 37.19 3.93
2074 2177 3.127250 TCCAGAATACAATGGGGCCTAA 58.873 45.455 0.84 0.00 37.19 2.69
2075 2178 3.726859 TCCAGAATACAATGGGGCCTAAT 59.273 43.478 0.84 0.00 37.19 1.73
2076 2179 4.917040 TCCAGAATACAATGGGGCCTAATA 59.083 41.667 0.84 0.00 37.19 0.98
2077 2180 5.374154 TCCAGAATACAATGGGGCCTAATAA 59.626 40.000 0.84 0.00 37.19 1.40
2078 2181 6.074648 CCAGAATACAATGGGGCCTAATAAA 58.925 40.000 0.84 0.00 32.63 1.40
2079 2182 6.015434 CCAGAATACAATGGGGCCTAATAAAC 60.015 42.308 0.84 0.00 32.63 2.01
2080 2183 6.015434 CAGAATACAATGGGGCCTAATAAACC 60.015 42.308 0.84 0.00 0.00 3.27
2081 2184 3.040655 ACAATGGGGCCTAATAAACCC 57.959 47.619 0.84 0.00 43.44 4.11
2082 2185 1.960689 CAATGGGGCCTAATAAACCCG 59.039 52.381 0.84 0.00 46.38 5.28
2083 2186 0.481128 ATGGGGCCTAATAAACCCGG 59.519 55.000 0.84 0.00 46.38 5.73
2084 2187 0.623911 TGGGGCCTAATAAACCCGGA 60.624 55.000 0.73 0.00 46.38 5.14
2085 2188 0.179009 GGGGCCTAATAAACCCGGAC 60.179 60.000 0.73 0.00 45.27 4.79
2086 2189 0.533531 GGGCCTAATAAACCCGGACG 60.534 60.000 0.73 0.00 32.92 4.79
2087 2190 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
2088 2191 0.465287 GCCTAATAAACCCGGACGGA 59.535 55.000 13.13 0.00 37.50 4.69
2089 2192 1.539712 GCCTAATAAACCCGGACGGAG 60.540 57.143 13.13 5.04 37.50 4.63
2090 2193 1.069668 CCTAATAAACCCGGACGGAGG 59.930 57.143 13.13 5.18 37.50 4.30
2091 2194 1.758862 CTAATAAACCCGGACGGAGGT 59.241 52.381 13.13 0.00 38.27 3.85
2092 2195 1.864669 AATAAACCCGGACGGAGGTA 58.135 50.000 13.13 1.24 34.45 3.08
2093 2196 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
2094 2197 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
2103 2206 3.497640 CGGACGGAGGTAGTATGTCTTAG 59.502 52.174 0.00 0.00 0.00 2.18
2144 2248 3.421844 GAAACATTGGTGGGCTCTAGTT 58.578 45.455 0.00 0.00 0.00 2.24
2174 2278 5.373222 ACACTACCAGTTGTTTTCATGCTA 58.627 37.500 0.00 0.00 0.00 3.49
2188 2292 8.902806 TGTTTTCATGCTAAGGGTATTATCTTG 58.097 33.333 0.00 0.00 0.00 3.02
2343 2453 0.326618 ATAGGTCTGGTGGAGGTGGG 60.327 60.000 0.00 0.00 0.00 4.61
2524 2634 1.819632 GGGAGCGGTGCTGGTTATG 60.820 63.158 5.98 0.00 39.88 1.90
2525 2635 1.819632 GGAGCGGTGCTGGTTATGG 60.820 63.158 0.00 0.00 39.88 2.74
2526 2636 1.819632 GAGCGGTGCTGGTTATGGG 60.820 63.158 0.00 0.00 39.88 4.00
2619 2732 1.043673 GCGGTCCTCCAGGTGACTAT 61.044 60.000 10.49 0.00 40.21 2.12
2751 2864 1.525442 CCCACCTCCGAACCCATAC 59.475 63.158 0.00 0.00 0.00 2.39
2874 2987 1.051812 CTCCTTATCATGGCGGAGGT 58.948 55.000 10.67 0.00 39.45 3.85
2880 2993 3.402681 CATGGCGGAGGTGGAGGT 61.403 66.667 0.00 0.00 0.00 3.85
2997 3110 0.329596 ACATCTCAAACCTGCCTCCC 59.670 55.000 0.00 0.00 0.00 4.30
3120 3235 2.447887 GCTGTGGATCTGTGCGTCG 61.448 63.158 0.00 0.00 0.00 5.12
3156 3271 7.775053 ATTTTGTGAGGTGCTCCTTAATTTA 57.225 32.000 9.08 0.00 45.24 1.40
3228 3451 9.449719 TCCTCTTAAAATATCTCACTTTCAACC 57.550 33.333 0.00 0.00 0.00 3.77
3232 3455 6.840780 AAAATATCTCACTTTCAACCTGGG 57.159 37.500 0.00 0.00 0.00 4.45
3233 3456 5.520748 AATATCTCACTTTCAACCTGGGT 57.479 39.130 0.00 0.00 0.00 4.51
3383 3618 5.526479 GGACCCCGTCTATCATTCTTTTAAC 59.474 44.000 0.00 0.00 32.47 2.01
3384 3619 6.309389 ACCCCGTCTATCATTCTTTTAACT 57.691 37.500 0.00 0.00 0.00 2.24
3386 3621 7.173032 ACCCCGTCTATCATTCTTTTAACTTT 58.827 34.615 0.00 0.00 0.00 2.66
3387 3622 7.668469 ACCCCGTCTATCATTCTTTTAACTTTT 59.332 33.333 0.00 0.00 0.00 2.27
3388 3623 8.520351 CCCCGTCTATCATTCTTTTAACTTTTT 58.480 33.333 0.00 0.00 0.00 1.94
3434 3669 2.505628 TGCGAAGTTTACGTGTGGTA 57.494 45.000 0.00 0.00 0.00 3.25
3508 4070 5.826601 TGACTCTGCTCACATAGTTCTAG 57.173 43.478 0.00 0.00 33.69 2.43
3527 4089 8.945193 AGTTCTAGTCCAAAATAGGCCAATATA 58.055 33.333 5.01 0.00 0.00 0.86
3728 4290 9.919348 CTTGTTGGTCATTTTATTTTGTTCTTG 57.081 29.630 0.00 0.00 0.00 3.02
3928 4490 1.028905 TGTTTAGTGCTGTGGTTGCC 58.971 50.000 0.00 0.00 0.00 4.52
3951 4513 6.513230 GCCACGATGCATCACATTTTTCTATA 60.513 38.462 25.70 0.00 39.84 1.31
3993 4558 6.430308 CCACTTCATAATGCATATGCTCTTCT 59.570 38.462 27.13 11.38 41.08 2.85
3994 4559 7.040617 CCACTTCATAATGCATATGCTCTTCTT 60.041 37.037 27.13 14.73 41.08 2.52
3995 4560 8.016229 CACTTCATAATGCATATGCTCTTCTTC 58.984 37.037 27.13 0.00 41.08 2.87
3996 4561 6.716898 TCATAATGCATATGCTCTTCTTCG 57.283 37.500 27.13 9.33 41.08 3.79
4202 4769 9.893634 TTGATATCTCAATTTGCATTTTCCAAT 57.106 25.926 3.98 0.00 36.46 3.16
4226 4793 9.754382 AATCATTGTCATATTATTTTGTCCTGC 57.246 29.630 0.00 0.00 0.00 4.85
4257 4824 6.719370 TGTGTGATTTACAGGCCTCTTAAAAT 59.281 34.615 16.61 13.13 40.69 1.82
4288 4855 6.154192 AGCGGATATGAGAATATGTCATGAGT 59.846 38.462 0.00 0.00 35.39 3.41
4446 5013 4.700213 GCCAAGTACAGTTGACCAATATGT 59.300 41.667 0.00 8.10 0.00 2.29
4506 5073 8.859090 AGCATATATCTTATGTATCTCCAGCTC 58.141 37.037 0.00 0.00 0.00 4.09
4691 5258 1.559149 TTCGCGGCCGTACTGAAAAC 61.559 55.000 28.70 5.16 35.54 2.43
4830 5397 3.334583 TCCATTGTCTTACTCCAGTGC 57.665 47.619 0.00 0.00 0.00 4.40
5104 5673 1.351350 GCTTTGGAGAACAGGTAGGGT 59.649 52.381 0.00 0.00 0.00 4.34
5161 5730 3.868757 AGTCTGCTAGCGATGTGTTTA 57.131 42.857 10.77 0.00 0.00 2.01
5248 5883 8.101419 ACGACATTTCCTTTATCTAGTCCTTTT 58.899 33.333 0.00 0.00 0.00 2.27
5493 6128 2.228822 ACTTCATCCGGTGATGTTTTGC 59.771 45.455 15.17 0.00 46.96 3.68
5568 6239 9.747898 TTTATGTGTTACCAAGAGGATTGTATT 57.252 29.630 0.00 0.00 38.69 1.89
5592 6263 6.743575 AGTTTATGTTGGTACTCTCATTGC 57.256 37.500 0.00 0.00 0.00 3.56
5614 6288 3.695606 AGGACAGGACGTGCGCAT 61.696 61.111 15.91 0.00 41.69 4.73
5635 6309 1.668253 GCGTGCGTCTACGTTACCAC 61.668 60.000 0.00 3.18 45.36 4.16
5650 6324 3.240203 CACGCGTGGACGTTGAAT 58.760 55.556 31.15 0.00 45.75 2.57
5680 6354 6.209589 ACAGAAGTCAGCTCACAGATAAACTA 59.790 38.462 0.00 0.00 0.00 2.24
5757 6431 7.244898 TCCACAATGTACGTGCAAAATTATAC 58.755 34.615 11.22 0.00 32.85 1.47
5807 6481 8.352942 GTTGATTTTGTGAGAATACAACCTTCT 58.647 33.333 0.00 0.00 40.04 2.85
5823 6497 0.178068 TTCTAGGGCATCTCCAACGC 59.822 55.000 0.00 0.00 36.21 4.84
5829 6503 2.579201 CATCTCCAACGCGGACCT 59.421 61.111 12.47 0.00 39.64 3.85
5836 6510 0.882927 CCAACGCGGACCTCAAGAAA 60.883 55.000 12.47 0.00 36.56 2.52
5839 6513 1.156736 ACGCGGACCTCAAGAAAATG 58.843 50.000 12.47 0.00 0.00 2.32
5840 6514 1.270625 ACGCGGACCTCAAGAAAATGA 60.271 47.619 12.47 0.00 0.00 2.57
5842 6516 2.420022 CGCGGACCTCAAGAAAATGAAT 59.580 45.455 0.00 0.00 0.00 2.57
5843 6517 3.119849 CGCGGACCTCAAGAAAATGAATT 60.120 43.478 0.00 0.00 0.00 2.17
5878 6554 4.218312 AGGCTGGGTATTCATCCAAATTC 58.782 43.478 0.00 0.00 31.97 2.17
5919 6596 7.591006 AGTATATGGACTAAACAACACAACG 57.409 36.000 0.00 0.00 0.00 4.10
5935 6612 7.012327 ACAACACAACGCTAGCAATATATGAAT 59.988 33.333 16.45 0.00 0.00 2.57
5971 6648 6.748132 AGCATAACGGCAATAGCAATATTTT 58.252 32.000 0.00 0.00 44.61 1.82
5973 6650 8.023128 AGCATAACGGCAATAGCAATATTTTAG 58.977 33.333 0.00 0.00 44.61 1.85
6069 6748 1.227704 TCTGCGGTCGCCTTTTTGA 60.228 52.632 12.94 0.00 41.09 2.69
6072 6751 0.671251 TGCGGTCGCCTTTTTGAAAT 59.329 45.000 12.94 0.00 41.09 2.17
6169 6848 8.591940 TCAAATATTCATCACCCATTTTGTTCA 58.408 29.630 0.00 0.00 0.00 3.18
6552 7235 0.035725 TCTGCCATTCAGCTCACTGG 60.036 55.000 0.00 0.00 44.59 4.00
6568 7251 4.661222 TCACTGGTTTGCCTATCAATGAA 58.339 39.130 0.00 0.00 34.12 2.57
6570 7253 5.716228 TCACTGGTTTGCCTATCAATGAAAT 59.284 36.000 0.00 0.00 34.12 2.17
6594 7277 6.068010 TCCACAAACATATCAACCTTGAAGT 58.932 36.000 0.00 0.00 41.13 3.01
6627 7310 3.275999 GTCGCACCATTACATAAACCCT 58.724 45.455 0.00 0.00 0.00 4.34
6630 7313 4.767928 TCGCACCATTACATAAACCCTTTT 59.232 37.500 0.00 0.00 0.00 2.27
6640 7323 0.178944 AAACCCTTTTTAGGCCGGCT 60.179 50.000 28.56 15.07 0.00 5.52
6715 7398 6.469782 ACAAAAAGATGTGACCTTTGTGAT 57.530 33.333 10.26 0.00 39.86 3.06
6751 7434 0.678048 GCATCGGTCCTCAAAGCCTT 60.678 55.000 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.941309 ACGAACCGCCCACCCAAC 62.941 66.667 0.00 0.00 0.00 3.77
28 29 4.939368 CACGAACCGCCCACCCAA 62.939 66.667 0.00 0.00 0.00 4.12
32 33 3.723348 GAAGCACGAACCGCCCAC 61.723 66.667 0.00 0.00 0.00 4.61
33 34 2.951475 AAAGAAGCACGAACCGCCCA 62.951 55.000 0.00 0.00 0.00 5.36
34 35 1.792118 AAAAGAAGCACGAACCGCCC 61.792 55.000 0.00 0.00 0.00 6.13
35 36 0.385598 GAAAAGAAGCACGAACCGCC 60.386 55.000 0.00 0.00 0.00 6.13
36 37 0.306533 TGAAAAGAAGCACGAACCGC 59.693 50.000 0.00 0.00 0.00 5.68
37 38 2.748461 TTGAAAAGAAGCACGAACCG 57.252 45.000 0.00 0.00 0.00 4.44
38 39 5.281727 AGATTTTGAAAAGAAGCACGAACC 58.718 37.500 0.00 0.00 0.00 3.62
39 40 6.812481 AAGATTTTGAAAAGAAGCACGAAC 57.188 33.333 0.00 0.00 0.00 3.95
40 41 7.032580 TCAAAGATTTTGAAAAGAAGCACGAA 58.967 30.769 1.98 0.00 0.00 3.85
41 42 6.559810 TCAAAGATTTTGAAAAGAAGCACGA 58.440 32.000 1.98 0.00 0.00 4.35
42 43 6.074676 CCTCAAAGATTTTGAAAAGAAGCACG 60.075 38.462 5.82 0.00 0.00 5.34
43 44 6.292542 GCCTCAAAGATTTTGAAAAGAAGCAC 60.293 38.462 5.82 0.00 0.00 4.40
44 45 5.754890 GCCTCAAAGATTTTGAAAAGAAGCA 59.245 36.000 5.82 0.00 0.00 3.91
45 46 5.987953 AGCCTCAAAGATTTTGAAAAGAAGC 59.012 36.000 5.82 0.00 0.00 3.86
46 47 9.702494 ATTAGCCTCAAAGATTTTGAAAAGAAG 57.298 29.630 5.82 0.00 0.00 2.85
47 48 9.696917 GATTAGCCTCAAAGATTTTGAAAAGAA 57.303 29.630 5.82 0.42 0.00 2.52
48 49 9.082313 AGATTAGCCTCAAAGATTTTGAAAAGA 57.918 29.630 5.82 0.00 0.00 2.52
51 52 9.520515 ACTAGATTAGCCTCAAAGATTTTGAAA 57.479 29.630 0.00 0.00 0.00 2.69
52 53 9.520515 AACTAGATTAGCCTCAAAGATTTTGAA 57.479 29.630 0.00 0.00 0.00 2.69
53 54 9.520515 AAACTAGATTAGCCTCAAAGATTTTGA 57.479 29.630 0.00 4.39 0.00 2.69
57 58 9.061435 GCATAAACTAGATTAGCCTCAAAGATT 57.939 33.333 0.00 0.00 0.00 2.40
58 59 8.213679 TGCATAAACTAGATTAGCCTCAAAGAT 58.786 33.333 0.00 0.00 0.00 2.40
59 60 7.564793 TGCATAAACTAGATTAGCCTCAAAGA 58.435 34.615 0.00 0.00 0.00 2.52
60 61 7.041508 CCTGCATAAACTAGATTAGCCTCAAAG 60.042 40.741 0.00 0.00 0.00 2.77
61 62 6.767902 CCTGCATAAACTAGATTAGCCTCAAA 59.232 38.462 0.00 0.00 0.00 2.69
62 63 6.099701 TCCTGCATAAACTAGATTAGCCTCAA 59.900 38.462 0.00 0.00 0.00 3.02
63 64 5.602561 TCCTGCATAAACTAGATTAGCCTCA 59.397 40.000 0.00 0.00 0.00 3.86
64 65 6.102897 TCCTGCATAAACTAGATTAGCCTC 57.897 41.667 0.00 0.00 0.00 4.70
65 66 6.694445 ATCCTGCATAAACTAGATTAGCCT 57.306 37.500 0.00 0.00 0.00 4.58
66 67 7.751768 AAATCCTGCATAAACTAGATTAGCC 57.248 36.000 0.00 0.00 0.00 3.93
67 68 9.061435 AGAAAATCCTGCATAAACTAGATTAGC 57.939 33.333 0.00 2.34 0.00 3.09
70 71 9.692325 AGAAGAAAATCCTGCATAAACTAGATT 57.308 29.630 0.00 0.00 0.00 2.40
104 105 9.901172 GGGGACTATAGAATTTTGTCTAGAAAA 57.099 33.333 6.78 0.00 33.66 2.29
105 106 8.491958 GGGGGACTATAGAATTTTGTCTAGAAA 58.508 37.037 6.78 0.00 33.66 2.52
106 107 8.030913 GGGGGACTATAGAATTTTGTCTAGAA 57.969 38.462 6.78 0.00 33.66 2.10
107 108 7.613551 GGGGGACTATAGAATTTTGTCTAGA 57.386 40.000 6.78 0.00 33.66 2.43
129 130 2.626467 CCTTTTCTGGGGGAGGGGG 61.626 68.421 0.00 0.00 0.00 5.40
130 131 1.857348 ACCTTTTCTGGGGGAGGGG 60.857 63.158 0.00 0.00 33.51 4.79
131 132 0.846870 AGACCTTTTCTGGGGGAGGG 60.847 60.000 0.00 0.00 31.12 4.30
132 133 1.004862 GAAGACCTTTTCTGGGGGAGG 59.995 57.143 0.00 0.00 33.46 4.30
133 134 1.988846 AGAAGACCTTTTCTGGGGGAG 59.011 52.381 0.00 0.00 36.12 4.30
134 135 2.133858 AGAAGACCTTTTCTGGGGGA 57.866 50.000 0.00 0.00 36.12 4.81
135 136 4.722279 ACTATAGAAGACCTTTTCTGGGGG 59.278 45.833 6.78 0.00 37.91 5.40
136 137 5.959583 ACTATAGAAGACCTTTTCTGGGG 57.040 43.478 6.78 0.00 37.91 4.96
137 138 6.824196 GGAAACTATAGAAGACCTTTTCTGGG 59.176 42.308 6.78 0.00 37.91 4.45
138 139 7.625469 AGGAAACTATAGAAGACCTTTTCTGG 58.375 38.462 6.78 0.00 40.61 3.86
139 140 8.314751 TGAGGAAACTATAGAAGACCTTTTCTG 58.685 37.037 6.78 0.00 44.43 3.02
140 141 8.315482 GTGAGGAAACTATAGAAGACCTTTTCT 58.685 37.037 6.78 0.00 44.43 2.52
141 142 8.315482 AGTGAGGAAACTATAGAAGACCTTTTC 58.685 37.037 6.78 4.18 44.43 2.29
162 163 4.572389 GCACTCCACCATAACATTAGTGAG 59.428 45.833 0.00 0.00 35.93 3.51
198 199 1.202604 TCGGTGTCTCCAGTTTTGACC 60.203 52.381 0.00 0.00 35.57 4.02
201 202 2.240493 AGTCGGTGTCTCCAGTTTTG 57.760 50.000 0.00 0.00 35.57 2.44
206 207 2.035961 TCTTTGAAGTCGGTGTCTCCAG 59.964 50.000 0.00 0.00 35.57 3.86
231 232 9.466497 AAAGATCCATGACTAAATGTTACATGT 57.534 29.630 2.69 2.69 37.29 3.21
268 269 6.183360 GGGAAGATGTCTAGATTGAACAAACG 60.183 42.308 0.00 0.00 0.00 3.60
302 303 7.601856 TGTCAAAGATTTGTGGCTTATTTAGG 58.398 34.615 5.29 0.00 39.18 2.69
388 389 7.292292 CCGACAAATATTTTTCACTTACACGA 58.708 34.615 13.34 0.00 0.00 4.35
405 406 5.913137 TGATTTTAATGGAGCCGACAAAT 57.087 34.783 0.00 0.00 0.00 2.32
407 408 6.353323 TCTATGATTTTAATGGAGCCGACAA 58.647 36.000 0.00 0.00 0.00 3.18
409 410 6.861065 TTCTATGATTTTAATGGAGCCGAC 57.139 37.500 0.00 0.00 0.00 4.79
476 478 4.289238 TGTAGTTAATCTCCCCGCAAAA 57.711 40.909 0.00 0.00 0.00 2.44
477 479 3.985019 TGTAGTTAATCTCCCCGCAAA 57.015 42.857 0.00 0.00 0.00 3.68
480 482 3.538634 ACTTGTAGTTAATCTCCCCGC 57.461 47.619 0.00 0.00 0.00 6.13
481 483 5.731591 AGAAACTTGTAGTTAATCTCCCCG 58.268 41.667 0.00 0.00 37.47 5.73
482 484 9.682465 ATTAAGAAACTTGTAGTTAATCTCCCC 57.318 33.333 0.00 0.00 37.47 4.81
560 562 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
561 563 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
562 564 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
563 565 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
564 566 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
565 567 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
566 568 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
567 569 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
568 570 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
596 598 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
597 599 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
598 600 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
599 601 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
600 602 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
601 603 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
604 606 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
605 607 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
606 608 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
607 609 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
608 610 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
609 611 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
610 612 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
611 613 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
612 614 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
613 615 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
614 616 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
615 617 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
616 618 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
617 619 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
618 620 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
619 621 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
620 622 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
621 623 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
622 624 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
623 625 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
624 626 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
625 627 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
626 628 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
627 629 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
628 630 1.002069 TAACTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
629 631 2.378378 ATAACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
630 632 6.888632 TCATATAATAACTACTCCCTCCGTCC 59.111 42.308 0.00 0.00 0.00 4.79
631 633 7.934855 TCATATAATAACTACTCCCTCCGTC 57.065 40.000 0.00 0.00 0.00 4.79
632 634 8.896722 ATTCATATAATAACTACTCCCTCCGT 57.103 34.615 0.00 0.00 0.00 4.69
682 684 5.451908 TGTTTGCTTGATCTGTTTCGATTC 58.548 37.500 0.00 0.00 0.00 2.52
686 688 6.142139 TGTATTGTTTGCTTGATCTGTTTCG 58.858 36.000 0.00 0.00 0.00 3.46
699 701 7.456684 TGTGTGTGTTTATTGTATTGTTTGC 57.543 32.000 0.00 0.00 0.00 3.68
780 809 9.592196 ACATAACCGTCTAATCTATTAACCCTA 57.408 33.333 0.00 0.00 0.00 3.53
781 810 8.488308 ACATAACCGTCTAATCTATTAACCCT 57.512 34.615 0.00 0.00 0.00 4.34
782 811 9.852091 CTACATAACCGTCTAATCTATTAACCC 57.148 37.037 0.00 0.00 0.00 4.11
795 848 1.861982 AGCCCACTACATAACCGTCT 58.138 50.000 0.00 0.00 0.00 4.18
822 875 6.878389 GGCCCATTTAGATGTTTTGATTTTGA 59.122 34.615 0.00 0.00 0.00 2.69
823 876 6.183360 CGGCCCATTTAGATGTTTTGATTTTG 60.183 38.462 0.00 0.00 0.00 2.44
824 877 5.874261 CGGCCCATTTAGATGTTTTGATTTT 59.126 36.000 0.00 0.00 0.00 1.82
825 878 5.418676 CGGCCCATTTAGATGTTTTGATTT 58.581 37.500 0.00 0.00 0.00 2.17
826 879 4.141959 CCGGCCCATTTAGATGTTTTGATT 60.142 41.667 0.00 0.00 0.00 2.57
827 880 3.384467 CCGGCCCATTTAGATGTTTTGAT 59.616 43.478 0.00 0.00 0.00 2.57
865 918 0.974525 GGCCCACTACGTAGTTCCCT 60.975 60.000 25.35 0.71 37.78 4.20
867 920 0.459078 GAGGCCCACTACGTAGTTCC 59.541 60.000 25.35 23.20 37.78 3.62
934 989 7.780008 TGTAAAGAGTTCTGTTTGATTTCGA 57.220 32.000 5.41 0.00 0.00 3.71
967 1022 3.585990 CATCGCGAACATGGGCCC 61.586 66.667 17.59 17.59 0.00 5.80
1003 1058 0.036765 TAGGGCAAAACAGTCGCGAT 60.037 50.000 14.06 0.00 0.00 4.58
1216 1280 4.483476 AAAAGGTCAGAAAAACGATCCG 57.517 40.909 0.00 0.00 0.00 4.18
1377 1447 1.519326 TAGCCTCCTCCTCCACCACT 61.519 60.000 0.00 0.00 0.00 4.00
1545 1621 4.072131 GCCCATAACAAGTTCAGAAGACA 58.928 43.478 0.00 0.00 0.00 3.41
1561 1637 3.719479 TCTACCAAGCCTAAATGCCCATA 59.281 43.478 0.00 0.00 0.00 2.74
1562 1638 2.513738 TCTACCAAGCCTAAATGCCCAT 59.486 45.455 0.00 0.00 0.00 4.00
1567 1643 6.817765 TGAAAGTTCTACCAAGCCTAAATG 57.182 37.500 0.00 0.00 0.00 2.32
1621 1698 2.559698 TGAAATTCCAGTCAAGGCGA 57.440 45.000 0.00 0.00 0.00 5.54
1626 1703 4.898265 TGGGATGTTTGAAATTCCAGTCAA 59.102 37.500 10.68 0.00 28.82 3.18
1722 1801 7.026562 CGAATGTAAATTGCACACAGGAATAA 58.973 34.615 0.00 0.00 37.28 1.40
1763 1844 9.175060 GCAGATACGCTAGTATATCAACATATG 57.825 37.037 14.26 0.00 43.14 1.78
1778 1859 2.076207 TAACCAGGGCAGATACGCTA 57.924 50.000 0.00 0.00 0.00 4.26
1786 1867 2.093128 ACGGAGTAAATAACCAGGGCAG 60.093 50.000 0.00 0.00 41.94 4.85
1825 1928 5.973899 TTAAATGCATGCTCTGGTGTAAA 57.026 34.783 20.33 0.00 0.00 2.01
1840 1943 8.641155 GTGGAAGTAAAACCGTAAATTAAATGC 58.359 33.333 0.00 0.00 0.00 3.56
1859 1962 1.426751 TAAACCCGGACAGTGGAAGT 58.573 50.000 0.73 0.00 0.00 3.01
1860 1963 2.781681 ATAAACCCGGACAGTGGAAG 57.218 50.000 0.73 0.00 0.00 3.46
1861 1964 3.839490 TCTAATAAACCCGGACAGTGGAA 59.161 43.478 0.73 0.00 0.00 3.53
1862 1965 3.196254 GTCTAATAAACCCGGACAGTGGA 59.804 47.826 0.73 0.00 0.00 4.02
1863 1966 3.528532 GTCTAATAAACCCGGACAGTGG 58.471 50.000 0.73 0.00 0.00 4.00
1864 1967 3.528532 GGTCTAATAAACCCGGACAGTG 58.471 50.000 0.73 0.00 0.00 3.66
1865 1968 2.502947 GGGTCTAATAAACCCGGACAGT 59.497 50.000 0.73 0.00 46.66 3.55
1866 1969 3.189618 GGGTCTAATAAACCCGGACAG 57.810 52.381 0.73 0.00 46.66 3.51
1873 1976 9.020731 TCAAAATGAAAGAGGGTCTAATAAACC 57.979 33.333 0.00 0.00 35.97 3.27
1875 1978 8.739972 GCTCAAAATGAAAGAGGGTCTAATAAA 58.260 33.333 0.00 0.00 0.00 1.40
1876 1979 7.339466 GGCTCAAAATGAAAGAGGGTCTAATAA 59.661 37.037 0.00 0.00 0.00 1.40
1877 1980 6.828785 GGCTCAAAATGAAAGAGGGTCTAATA 59.171 38.462 0.00 0.00 0.00 0.98
1878 1981 5.654209 GGCTCAAAATGAAAGAGGGTCTAAT 59.346 40.000 0.00 0.00 0.00 1.73
1879 1982 5.010282 GGCTCAAAATGAAAGAGGGTCTAA 58.990 41.667 0.00 0.00 0.00 2.10
1880 1983 4.042809 TGGCTCAAAATGAAAGAGGGTCTA 59.957 41.667 0.00 0.00 0.00 2.59
1881 1984 3.181429 TGGCTCAAAATGAAAGAGGGTCT 60.181 43.478 0.00 0.00 0.00 3.85
1882 1985 3.157087 TGGCTCAAAATGAAAGAGGGTC 58.843 45.455 0.00 0.00 0.00 4.46
1883 1986 3.243359 TGGCTCAAAATGAAAGAGGGT 57.757 42.857 0.00 0.00 0.00 4.34
1884 1987 4.039609 ACTTTGGCTCAAAATGAAAGAGGG 59.960 41.667 0.00 0.00 32.75 4.30
1885 1988 5.205759 ACTTTGGCTCAAAATGAAAGAGG 57.794 39.130 0.00 0.00 32.75 3.69
1886 1989 6.757947 TCAAACTTTGGCTCAAAATGAAAGAG 59.242 34.615 1.62 0.00 32.75 2.85
1887 1990 6.534793 GTCAAACTTTGGCTCAAAATGAAAGA 59.465 34.615 0.00 0.00 32.75 2.52
1888 1991 6.238184 GGTCAAACTTTGGCTCAAAATGAAAG 60.238 38.462 6.09 0.00 35.12 2.62
1889 1992 5.584251 GGTCAAACTTTGGCTCAAAATGAAA 59.416 36.000 6.09 0.00 35.12 2.69
1890 1993 5.115480 GGTCAAACTTTGGCTCAAAATGAA 58.885 37.500 6.09 0.00 35.12 2.57
1891 1994 4.161189 TGGTCAAACTTTGGCTCAAAATGA 59.839 37.500 6.09 4.88 35.12 2.57
1892 1995 4.440880 TGGTCAAACTTTGGCTCAAAATG 58.559 39.130 6.09 3.14 35.12 2.32
1893 1996 4.751767 TGGTCAAACTTTGGCTCAAAAT 57.248 36.364 6.09 0.00 35.12 1.82
1894 1997 4.161189 TCATGGTCAAACTTTGGCTCAAAA 59.839 37.500 6.09 0.00 35.12 2.44
1895 1998 3.703556 TCATGGTCAAACTTTGGCTCAAA 59.296 39.130 6.09 1.27 35.12 2.69
1896 1999 3.295093 TCATGGTCAAACTTTGGCTCAA 58.705 40.909 6.09 0.00 35.12 3.02
1897 2000 2.942804 TCATGGTCAAACTTTGGCTCA 58.057 42.857 6.09 3.47 35.12 4.26
1898 2001 4.525912 ATTCATGGTCAAACTTTGGCTC 57.474 40.909 6.09 0.00 35.12 4.70
1899 2002 4.961438 AATTCATGGTCAAACTTTGGCT 57.039 36.364 6.09 0.00 35.12 4.75
1900 2003 6.705825 ACTTAAATTCATGGTCAAACTTTGGC 59.294 34.615 1.62 0.00 33.62 4.52
1901 2004 9.757227 TTACTTAAATTCATGGTCAAACTTTGG 57.243 29.630 1.62 0.00 0.00 3.28
1944 2047 9.764870 GGTTTTCTATGGAATAGTTTTCGTTAC 57.235 33.333 0.00 0.00 46.98 2.50
1945 2048 9.729281 AGGTTTTCTATGGAATAGTTTTCGTTA 57.271 29.630 0.00 0.00 46.98 3.18
1946 2049 8.631480 AGGTTTTCTATGGAATAGTTTTCGTT 57.369 30.769 0.00 0.00 46.98 3.85
1947 2050 8.101419 AGAGGTTTTCTATGGAATAGTTTTCGT 58.899 33.333 0.00 0.00 46.98 3.85
1948 2051 8.494016 AGAGGTTTTCTATGGAATAGTTTTCG 57.506 34.615 0.00 0.00 46.98 3.46
1951 2054 9.807921 TGAAAGAGGTTTTCTATGGAATAGTTT 57.192 29.630 0.00 0.00 46.98 2.66
1952 2055 9.807921 TTGAAAGAGGTTTTCTATGGAATAGTT 57.192 29.630 0.00 0.00 46.98 2.24
1953 2056 9.807921 TTTGAAAGAGGTTTTCTATGGAATAGT 57.192 29.630 0.00 0.00 46.98 2.12
1957 2060 9.581289 TGTATTTGAAAGAGGTTTTCTATGGAA 57.419 29.630 0.00 0.00 34.14 3.53
1958 2061 9.581289 TTGTATTTGAAAGAGGTTTTCTATGGA 57.419 29.630 1.88 0.00 34.14 3.41
1963 2066 8.923270 TGGATTTGTATTTGAAAGAGGTTTTCT 58.077 29.630 1.88 0.00 37.93 2.52
1964 2067 9.541143 TTGGATTTGTATTTGAAAGAGGTTTTC 57.459 29.630 0.00 0.00 0.00 2.29
1965 2068 9.325198 GTTGGATTTGTATTTGAAAGAGGTTTT 57.675 29.630 0.00 0.00 0.00 2.43
1966 2069 8.482128 TGTTGGATTTGTATTTGAAAGAGGTTT 58.518 29.630 0.00 0.00 0.00 3.27
1967 2070 8.017418 TGTTGGATTTGTATTTGAAAGAGGTT 57.983 30.769 0.00 0.00 0.00 3.50
1968 2071 7.595819 TGTTGGATTTGTATTTGAAAGAGGT 57.404 32.000 0.00 0.00 0.00 3.85
1982 2085 9.289303 GCTACACAAAGTATATTGTTGGATTTG 57.711 33.333 0.00 0.00 41.44 2.32
1983 2086 9.019656 TGCTACACAAAGTATATTGTTGGATTT 57.980 29.630 0.00 0.00 41.44 2.17
1984 2087 8.574251 TGCTACACAAAGTATATTGTTGGATT 57.426 30.769 0.00 0.00 41.44 3.01
1985 2088 8.752005 ATGCTACACAAAGTATATTGTTGGAT 57.248 30.769 0.00 0.00 41.44 3.41
1986 2089 9.845740 ATATGCTACACAAAGTATATTGTTGGA 57.154 29.630 0.00 0.00 41.44 3.53
2022 2125 9.777297 AGTTTGACCATGCATTTAACTAAAAAT 57.223 25.926 0.00 0.00 0.00 1.82
2023 2126 9.606631 AAGTTTGACCATGCATTTAACTAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
2024 2127 9.039870 CAAGTTTGACCATGCATTTAACTAAAA 57.960 29.630 0.00 0.00 0.00 1.52
2025 2128 7.655328 CCAAGTTTGACCATGCATTTAACTAAA 59.345 33.333 0.00 0.00 0.00 1.85
2026 2129 7.014711 TCCAAGTTTGACCATGCATTTAACTAA 59.985 33.333 0.00 0.00 0.00 2.24
2027 2130 6.491745 TCCAAGTTTGACCATGCATTTAACTA 59.508 34.615 0.00 0.00 0.00 2.24
2028 2131 5.304101 TCCAAGTTTGACCATGCATTTAACT 59.696 36.000 0.00 0.00 0.00 2.24
2029 2132 5.537188 TCCAAGTTTGACCATGCATTTAAC 58.463 37.500 0.00 0.00 0.00 2.01
2030 2133 5.798125 TCCAAGTTTGACCATGCATTTAA 57.202 34.783 0.00 0.00 0.00 1.52
2031 2134 5.105392 GGATCCAAGTTTGACCATGCATTTA 60.105 40.000 6.95 0.00 0.00 1.40
2032 2135 4.322953 GGATCCAAGTTTGACCATGCATTT 60.323 41.667 6.95 0.00 0.00 2.32
2033 2136 3.196254 GGATCCAAGTTTGACCATGCATT 59.804 43.478 6.95 0.00 0.00 3.56
2034 2137 2.762327 GGATCCAAGTTTGACCATGCAT 59.238 45.455 6.95 0.00 0.00 3.96
2035 2138 2.170166 GGATCCAAGTTTGACCATGCA 58.830 47.619 6.95 0.00 0.00 3.96
2036 2139 2.165030 CTGGATCCAAGTTTGACCATGC 59.835 50.000 17.00 0.00 0.00 4.06
2037 2140 3.689347 TCTGGATCCAAGTTTGACCATG 58.311 45.455 17.00 0.00 0.00 3.66
2038 2141 4.387026 TTCTGGATCCAAGTTTGACCAT 57.613 40.909 17.00 0.00 0.00 3.55
2039 2142 3.874383 TTCTGGATCCAAGTTTGACCA 57.126 42.857 17.00 0.00 0.00 4.02
2040 2143 5.253330 TGTATTCTGGATCCAAGTTTGACC 58.747 41.667 17.00 0.01 0.00 4.02
2041 2144 6.817765 TTGTATTCTGGATCCAAGTTTGAC 57.182 37.500 17.00 9.65 0.00 3.18
2042 2145 6.377996 CCATTGTATTCTGGATCCAAGTTTGA 59.622 38.462 17.00 6.20 34.24 2.69
2043 2146 6.406177 CCCATTGTATTCTGGATCCAAGTTTG 60.406 42.308 17.00 3.53 34.24 2.93
2044 2147 5.658190 CCCATTGTATTCTGGATCCAAGTTT 59.342 40.000 17.00 3.73 34.24 2.66
2045 2148 5.203528 CCCATTGTATTCTGGATCCAAGTT 58.796 41.667 17.00 5.58 34.24 2.66
2046 2149 4.386761 CCCCATTGTATTCTGGATCCAAGT 60.387 45.833 17.00 7.14 34.24 3.16
2047 2150 4.147321 CCCCATTGTATTCTGGATCCAAG 58.853 47.826 17.00 10.18 34.24 3.61
2048 2151 3.691020 GCCCCATTGTATTCTGGATCCAA 60.691 47.826 17.00 1.47 34.24 3.53
2049 2152 2.158475 GCCCCATTGTATTCTGGATCCA 60.158 50.000 15.27 15.27 34.24 3.41
2050 2153 2.519013 GCCCCATTGTATTCTGGATCC 58.481 52.381 4.20 4.20 34.24 3.36
2051 2154 2.108952 AGGCCCCATTGTATTCTGGATC 59.891 50.000 0.00 0.00 34.24 3.36
2052 2155 2.146998 AGGCCCCATTGTATTCTGGAT 58.853 47.619 0.00 0.00 34.24 3.41
2053 2156 1.607225 AGGCCCCATTGTATTCTGGA 58.393 50.000 0.00 0.00 34.24 3.86
2054 2157 3.593442 TTAGGCCCCATTGTATTCTGG 57.407 47.619 0.00 0.00 0.00 3.86
2055 2158 6.015434 GGTTTATTAGGCCCCATTGTATTCTG 60.015 42.308 0.00 0.00 0.00 3.02
2056 2159 6.075315 GGTTTATTAGGCCCCATTGTATTCT 58.925 40.000 0.00 0.00 0.00 2.40
2057 2160 5.245301 GGGTTTATTAGGCCCCATTGTATTC 59.755 44.000 0.00 0.00 37.09 1.75
2058 2161 5.152193 GGGTTTATTAGGCCCCATTGTATT 58.848 41.667 0.00 0.00 37.09 1.89
2059 2162 4.747583 GGGTTTATTAGGCCCCATTGTAT 58.252 43.478 0.00 0.00 37.09 2.29
2060 2163 3.435313 CGGGTTTATTAGGCCCCATTGTA 60.435 47.826 0.00 0.00 39.22 2.41
2061 2164 2.688515 CGGGTTTATTAGGCCCCATTGT 60.689 50.000 0.00 0.00 39.22 2.71
2062 2165 1.960689 CGGGTTTATTAGGCCCCATTG 59.039 52.381 0.00 0.00 39.22 2.82
2063 2166 1.133294 CCGGGTTTATTAGGCCCCATT 60.133 52.381 0.00 0.00 39.22 3.16
2064 2167 0.481128 CCGGGTTTATTAGGCCCCAT 59.519 55.000 0.00 0.00 39.22 4.00
2065 2168 0.623911 TCCGGGTTTATTAGGCCCCA 60.624 55.000 0.00 0.00 39.22 4.96
2066 2169 0.179009 GTCCGGGTTTATTAGGCCCC 60.179 60.000 0.00 0.00 39.22 5.80
2067 2170 0.533531 CGTCCGGGTTTATTAGGCCC 60.534 60.000 0.00 0.00 39.03 5.80
2068 2171 0.533531 CCGTCCGGGTTTATTAGGCC 60.534 60.000 0.00 0.00 0.00 5.19
2069 2172 0.465287 TCCGTCCGGGTTTATTAGGC 59.535 55.000 0.00 0.00 37.00 3.93
2070 2173 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
2071 2174 1.758862 ACCTCCGTCCGGGTTTATTAG 59.241 52.381 0.00 0.00 37.00 1.73
2072 2175 1.864669 ACCTCCGTCCGGGTTTATTA 58.135 50.000 0.00 0.00 37.00 0.98
2073 2176 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
2074 2177 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
2075 2178 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
2076 2179 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
2077 2180 0.259938 ATACTACCTCCGTCCGGGTT 59.740 55.000 0.00 0.00 37.07 4.11
2078 2181 0.466922 CATACTACCTCCGTCCGGGT 60.467 60.000 0.00 0.00 39.40 5.28
2079 2182 0.466922 ACATACTACCTCCGTCCGGG 60.467 60.000 0.00 0.00 35.59 5.73
2080 2183 0.950116 GACATACTACCTCCGTCCGG 59.050 60.000 0.00 0.00 0.00 5.14
2081 2184 1.964552 AGACATACTACCTCCGTCCG 58.035 55.000 0.00 0.00 0.00 4.79
2082 2185 3.252944 GCTAAGACATACTACCTCCGTCC 59.747 52.174 0.00 0.00 0.00 4.79
2083 2186 3.881688 TGCTAAGACATACTACCTCCGTC 59.118 47.826 0.00 0.00 0.00 4.79
2084 2187 3.894759 TGCTAAGACATACTACCTCCGT 58.105 45.455 0.00 0.00 0.00 4.69
2085 2188 4.913335 TTGCTAAGACATACTACCTCCG 57.087 45.455 0.00 0.00 0.00 4.63
2086 2189 6.163135 ACATTGCTAAGACATACTACCTCC 57.837 41.667 0.00 0.00 0.00 4.30
2087 2190 7.010552 CACAACATTGCTAAGACATACTACCTC 59.989 40.741 0.00 0.00 0.00 3.85
2088 2191 6.818644 CACAACATTGCTAAGACATACTACCT 59.181 38.462 0.00 0.00 0.00 3.08
2089 2192 6.456988 GCACAACATTGCTAAGACATACTACC 60.457 42.308 0.00 0.00 39.59 3.18
2090 2193 6.478588 GCACAACATTGCTAAGACATACTAC 58.521 40.000 0.00 0.00 39.59 2.73
2091 2194 6.662414 GCACAACATTGCTAAGACATACTA 57.338 37.500 0.00 0.00 39.59 1.82
2092 2195 5.551760 GCACAACATTGCTAAGACATACT 57.448 39.130 0.00 0.00 39.59 2.12
2103 2206 4.439305 TCCAATAAGAGCACAACATTGC 57.561 40.909 0.00 0.00 43.34 3.56
2144 2248 7.883217 TGAAAACAACTGGTAGTGTTTACAAA 58.117 30.769 2.49 0.00 32.44 2.83
2174 2278 8.525729 AGGATTCCATACAAGATAATACCCTT 57.474 34.615 5.29 0.00 0.00 3.95
2343 2453 2.212110 ACCACCACGACTGTACCCC 61.212 63.158 0.00 0.00 0.00 4.95
2516 2626 0.183731 GCCTCTTCCCCCATAACCAG 59.816 60.000 0.00 0.00 0.00 4.00
2524 2634 1.208165 TTCTCTTGGCCTCTTCCCCC 61.208 60.000 3.32 0.00 0.00 5.40
2525 2635 0.034960 GTTCTCTTGGCCTCTTCCCC 60.035 60.000 3.32 0.00 0.00 4.81
2526 2636 0.693049 TGTTCTCTTGGCCTCTTCCC 59.307 55.000 3.32 0.00 0.00 3.97
2619 2732 4.966787 GAACTTGGGGGCGGTGCA 62.967 66.667 0.00 0.00 0.00 4.57
2685 2798 1.369091 GACCACCGCCATAGCTGTTG 61.369 60.000 0.00 0.00 33.72 3.33
2697 2810 3.072468 TAAGGGCCTCGACCACCG 61.072 66.667 6.46 0.00 40.25 4.94
2700 2813 2.686106 GGGTAAGGGCCTCGACCA 60.686 66.667 29.20 4.21 29.21 4.02
2874 2987 1.493854 AATAACCACCGCCACCTCCA 61.494 55.000 0.00 0.00 0.00 3.86
2880 2993 0.250945 TTGCAGAATAACCACCGCCA 60.251 50.000 0.00 0.00 0.00 5.69
2997 3110 2.733552 CAGTTCCTCAACAGTCACATCG 59.266 50.000 0.00 0.00 34.60 3.84
3120 3235 8.082242 AGCACCTCACAAAATATGTTTTTAGAC 58.918 33.333 0.00 0.00 41.46 2.59
3183 3298 2.684881 GGAACACATACCAGGCATTCAG 59.315 50.000 0.00 0.00 0.00 3.02
3225 3448 2.247358 CAGGCATTAACAACCCAGGTT 58.753 47.619 0.00 0.00 39.13 3.50
3228 3451 2.228822 GACACAGGCATTAACAACCCAG 59.771 50.000 0.00 0.00 0.00 4.45
3232 3455 6.435430 TCATATGACACAGGCATTAACAAC 57.565 37.500 0.00 0.00 0.00 3.32
3233 3456 6.602803 ACATCATATGACACAGGCATTAACAA 59.397 34.615 7.78 0.00 0.00 2.83
3390 3625 9.499479 CATCTGATTTGTATAAGCACCTTATCT 57.501 33.333 1.07 0.00 37.72 1.98
3391 3626 8.233190 GCATCTGATTTGTATAAGCACCTTATC 58.767 37.037 1.07 0.00 37.72 1.75
3405 3640 4.451096 ACGTAAACTTCGCATCTGATTTGT 59.549 37.500 0.00 0.00 0.00 2.83
3406 3641 4.783036 CACGTAAACTTCGCATCTGATTTG 59.217 41.667 0.00 0.00 0.00 2.32
3413 3648 1.796459 ACCACACGTAAACTTCGCATC 59.204 47.619 0.00 0.00 0.00 3.91
3434 3669 8.013667 AGATAGAATTACCCTCACTATGGTCTT 58.986 37.037 0.00 0.00 36.04 3.01
3531 4093 7.888021 ACATACATTGAGGTAACAGGAATCAAA 59.112 33.333 0.00 0.00 41.41 2.69
3685 4247 5.319139 CAACAAGTGCTCGACATAATTGAG 58.681 41.667 6.14 0.00 41.39 3.02
3951 4513 4.357918 AGTGGAAAGCACAGAGTGTTAT 57.642 40.909 0.00 0.00 35.75 1.89
3959 4521 4.082625 TGCATTATGAAGTGGAAAGCACAG 60.083 41.667 0.00 0.00 0.00 3.66
3993 4558 7.278646 CCTCTCATGTCATAATCTGAAAACGAA 59.721 37.037 0.00 0.00 35.07 3.85
3994 4559 6.758416 CCTCTCATGTCATAATCTGAAAACGA 59.242 38.462 0.00 0.00 35.07 3.85
3995 4560 6.510799 GCCTCTCATGTCATAATCTGAAAACG 60.511 42.308 0.00 0.00 35.07 3.60
3996 4561 6.238593 GGCCTCTCATGTCATAATCTGAAAAC 60.239 42.308 0.00 0.00 35.07 2.43
4202 4769 7.066887 ACGCAGGACAAAATAATATGACAATGA 59.933 33.333 0.00 0.00 0.00 2.57
4226 4793 3.426159 GGCCTGTAAATCACACAATGACG 60.426 47.826 0.00 0.00 41.24 4.35
4281 4848 3.066621 GCAACAACCAGACAAACTCATGA 59.933 43.478 0.00 0.00 0.00 3.07
4288 4855 3.937706 CCAAAATGCAACAACCAGACAAA 59.062 39.130 0.00 0.00 0.00 2.83
4446 5013 5.221244 GCTCAGCTCCTTAAAAGAAAAACCA 60.221 40.000 0.00 0.00 0.00 3.67
4611 5178 1.198867 CTCCATCTCTGCGTCTATCCG 59.801 57.143 0.00 0.00 0.00 4.18
4830 5397 2.616376 TGACAAACAAACATCCGACCAG 59.384 45.455 0.00 0.00 0.00 4.00
5104 5673 4.623167 CGAATCAACCACACAACAAAAACA 59.377 37.500 0.00 0.00 0.00 2.83
5248 5883 4.890158 TCAGTTAGCAGATGGAAACTCA 57.110 40.909 0.00 0.00 29.93 3.41
5375 6010 4.448395 CCGTTTACCGTGAAGAACAATACA 59.552 41.667 0.00 0.00 33.66 2.29
5380 6015 1.219646 GCCGTTTACCGTGAAGAACA 58.780 50.000 0.00 0.00 33.66 3.18
5493 6128 6.312918 ACATTACTCAAGTACCATAAGTTGCG 59.687 38.462 0.00 0.00 31.15 4.85
5568 6239 6.821665 GGCAATGAGAGTACCAACATAAACTA 59.178 38.462 0.00 0.00 0.00 2.24
5592 6263 2.973899 CACGTCCTGTCCTGAGGG 59.026 66.667 0.00 0.00 33.41 4.30
5614 6288 1.003262 GGTAACGTAGACGCACGCAA 61.003 55.000 1.14 0.00 45.77 4.85
5635 6309 0.025001 GATGATTCAACGTCCACGCG 59.975 55.000 3.53 3.53 44.43 6.01
5650 6324 2.629617 TGTGAGCTGACTTCTGTGATGA 59.370 45.455 4.57 0.00 0.00 2.92
5680 6354 8.146412 ACTCTATTTTACGTGTACAGAAAACCT 58.854 33.333 0.00 2.50 0.00 3.50
5739 6413 6.651643 AGAGTTGGTATAATTTTGCACGTACA 59.348 34.615 0.00 0.00 0.00 2.90
5757 6431 2.345641 CGTATCGCTGTGAAAGAGTTGG 59.654 50.000 0.00 0.00 0.00 3.77
5807 6481 2.499205 CGCGTTGGAGATGCCCTA 59.501 61.111 0.00 0.00 36.93 3.53
5823 6497 8.863049 CATTTTAATTCATTTTCTTGAGGTCCG 58.137 33.333 0.00 0.00 0.00 4.79
5836 6510 9.169592 CCAGCCTTCATTTCATTTTAATTCATT 57.830 29.630 0.00 0.00 0.00 2.57
5839 6513 7.105588 ACCCAGCCTTCATTTCATTTTAATTC 58.894 34.615 0.00 0.00 0.00 2.17
5840 6514 7.019656 ACCCAGCCTTCATTTCATTTTAATT 57.980 32.000 0.00 0.00 0.00 1.40
5842 6516 7.732222 ATACCCAGCCTTCATTTCATTTTAA 57.268 32.000 0.00 0.00 0.00 1.52
5843 6517 7.398618 TGAATACCCAGCCTTCATTTCATTTTA 59.601 33.333 0.00 0.00 0.00 1.52
5903 6580 3.246699 TGCTAGCGTTGTGTTGTTTAGTC 59.753 43.478 10.77 0.00 0.00 2.59
5906 6583 4.822036 ATTGCTAGCGTTGTGTTGTTTA 57.178 36.364 10.77 0.00 0.00 2.01
5935 6612 4.755629 TGCCGTTATGCTAGTGTTGTTTTA 59.244 37.500 0.00 0.00 0.00 1.52
6119 6798 8.188799 TGAACAATTGTTTGGTTACATTCGTTA 58.811 29.630 24.02 0.00 38.56 3.18
6169 6848 9.107177 CTTCAATGAGCTATGTGAAGAATAAGT 57.893 33.333 20.40 0.00 46.45 2.24
6197 6880 4.202524 ACTGCTGGTGTTGAAAGGGTATTA 60.203 41.667 0.00 0.00 0.00 0.98
6227 6910 5.584649 TCTTAAGTTGGTATTGATTCTGCCG 59.415 40.000 1.63 0.00 0.00 5.69
6306 6989 6.455360 TCTGAAAAATCTGTGTCAGCTTTT 57.545 33.333 5.78 5.78 40.13 2.27
6343 7026 9.059260 TGTATGTTACTAATGTGCGTAGAGATA 57.941 33.333 0.00 0.00 0.00 1.98
6552 7235 5.964758 TGTGGATTTCATTGATAGGCAAAC 58.035 37.500 0.00 0.00 40.48 2.93
6568 7251 7.233348 ACTTCAAGGTTGATATGTTTGTGGATT 59.767 33.333 0.00 0.00 37.00 3.01
6570 7253 6.016360 CACTTCAAGGTTGATATGTTTGTGGA 60.016 38.462 0.00 0.00 37.00 4.02
6594 7277 0.606944 GGTGCGACCAATTACCACCA 60.607 55.000 3.43 0.00 44.07 4.17
6640 7323 2.833943 GAGGGTCCTTACTTTCCCGTTA 59.166 50.000 0.00 0.00 44.13 3.18
6715 7398 4.516321 CCGATGCTGGATGTGATGATTTTA 59.484 41.667 0.00 0.00 0.00 1.52
6751 7434 6.824196 TGTTGGTGACACAAAGTATTACTTGA 59.176 34.615 9.78 0.00 42.67 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.