Multiple sequence alignment - TraesCS3D01G100900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G100900 chr3D 100.000 8196 0 0 1 8196 53493183 53484988 0.000000e+00 15136.0
1 TraesCS3D01G100900 chr3D 96.330 218 5 1 1 215 53548410 53548193 1.010000e-93 355.0
2 TraesCS3D01G100900 chr3D 94.595 148 5 3 4571 4718 53488480 53488336 8.280000e-55 226.0
3 TraesCS3D01G100900 chr3D 94.595 148 5 3 4704 4848 53488613 53488466 8.280000e-55 226.0
4 TraesCS3D01G100900 chr3D 79.524 210 19 13 1184 1390 53491946 53491758 2.400000e-25 128.0
5 TraesCS3D01G100900 chr3D 79.524 210 19 13 1238 1426 53492000 53491794 2.400000e-25 128.0
6 TraesCS3D01G100900 chr3D 88.119 101 2 3 216 314 440701107 440701199 2.420000e-20 111.0
7 TraesCS3D01G100900 chr3D 96.970 66 2 0 216 281 592991831 592991896 2.420000e-20 111.0
8 TraesCS3D01G100900 chr3D 96.000 50 2 0 165 214 544417124 544417075 1.900000e-11 82.4
9 TraesCS3D01G100900 chr3A 96.891 7881 170 36 344 8196 64795014 64787181 0.000000e+00 13127.0
10 TraesCS3D01G100900 chr3A 95.794 214 6 1 1 211 64826468 64826681 7.880000e-90 342.0
11 TraesCS3D01G100900 chr3A 91.500 200 5 1 1239 1426 64794204 64794005 1.750000e-66 265.0
12 TraesCS3D01G100900 chr3A 95.946 148 3 3 4704 4848 64790823 64790676 3.820000e-58 237.0
13 TraesCS3D01G100900 chr3A 93.919 148 6 3 4571 4718 64790690 64790546 3.850000e-53 220.0
14 TraesCS3D01G100900 chr3B 94.611 2208 74 23 1239 3428 83911552 83909372 0.000000e+00 3376.0
15 TraesCS3D01G100900 chr3B 93.169 2108 103 20 6121 8196 83906840 83904742 0.000000e+00 3057.0
16 TraesCS3D01G100900 chr3B 96.140 1658 48 5 4704 6355 83908307 83906660 0.000000e+00 2693.0
17 TraesCS3D01G100900 chr3B 96.049 1215 33 5 3503 4716 83909362 83908162 0.000000e+00 1964.0
18 TraesCS3D01G100900 chr3B 91.355 937 30 17 337 1235 83912424 83911501 0.000000e+00 1234.0
19 TraesCS3D01G100900 chrUn 100.000 415 0 0 1658 2072 477248799 477249213 0.000000e+00 767.0
20 TraesCS3D01G100900 chr7D 98.824 170 2 0 1 170 51487811 51487980 3.720000e-78 303.0
21 TraesCS3D01G100900 chr7D 96.970 66 2 0 216 281 2874686 2874621 2.420000e-20 111.0
22 TraesCS3D01G100900 chr7D 94.118 51 3 0 164 214 349949545 349949495 2.450000e-10 78.7
23 TraesCS3D01G100900 chr4A 98.824 170 2 0 1 170 347566155 347565986 3.720000e-78 303.0
24 TraesCS3D01G100900 chr1D 98.235 170 3 0 1 170 4266127 4265958 1.730000e-76 298.0
25 TraesCS3D01G100900 chr1D 96.000 50 2 0 165 214 269500545 269500496 1.900000e-11 82.4
26 TraesCS3D01G100900 chr1D 94.118 51 3 0 165 215 455549650 455549600 2.450000e-10 78.7
27 TraesCS3D01G100900 chr6D 98.214 168 3 0 3 170 36573912 36573745 2.240000e-75 294.0
28 TraesCS3D01G100900 chr6D 86.735 98 3 3 216 311 172837709 172837620 5.230000e-17 100.0
29 TraesCS3D01G100900 chr6D 91.304 46 4 0 2559 2604 124944804 124944849 6.870000e-06 63.9
30 TraesCS3D01G100900 chr6A 97.647 170 4 0 1 170 66876422 66876253 8.050000e-75 292.0
31 TraesCS3D01G100900 chr6A 86.022 93 7 4 216 308 63835949 63835863 2.440000e-15 95.3
32 TraesCS3D01G100900 chr6A 91.304 46 4 0 2559 2604 156195737 156195692 6.870000e-06 63.9
33 TraesCS3D01G100900 chr5A 97.647 170 4 0 1 170 30521105 30521274 8.050000e-75 292.0
34 TraesCS3D01G100900 chr5A 97.647 170 4 0 1 170 426596218 426596049 8.050000e-75 292.0
35 TraesCS3D01G100900 chr5D 90.323 93 1 2 216 308 431880439 431880355 1.870000e-21 115.0
36 TraesCS3D01G100900 chr5D 97.826 46 1 0 165 210 542605050 542605005 6.820000e-11 80.5
37 TraesCS3D01G100900 chr5D 100.000 29 0 0 280 308 551604791 551604819 4.000000e-03 54.7
38 TraesCS3D01G100900 chr2D 90.323 93 1 2 216 308 166160720 166160804 1.870000e-21 115.0
39 TraesCS3D01G100900 chr2A 94.595 74 1 2 211 281 753766754 753766681 2.420000e-20 111.0
40 TraesCS3D01G100900 chr4D 94.118 68 2 1 216 281 344839983 344839916 1.460000e-17 102.0
41 TraesCS3D01G100900 chr2B 87.097 93 6 4 216 308 605513831 605513745 5.230000e-17 100.0
42 TraesCS3D01G100900 chr7B 86.316 95 3 5 216 308 728805626 728805712 2.440000e-15 95.3
43 TraesCS3D01G100900 chr1A 85.263 95 4 6 216 308 139917175 139917089 1.130000e-13 89.8
44 TraesCS3D01G100900 chr6B 98.000 50 1 0 165 214 688101239 688101190 4.070000e-13 87.9
45 TraesCS3D01G100900 chr5B 97.872 47 1 0 165 211 308797223 308797269 1.900000e-11 82.4
46 TraesCS3D01G100900 chr5B 84.524 84 3 2 227 308 214137052 214137127 3.170000e-09 75.0
47 TraesCS3D01G100900 chr5B 100.000 30 0 0 280 309 493693511 493693540 1.000000e-03 56.5
48 TraesCS3D01G100900 chr4B 100.000 29 0 0 280 308 541452351 541452323 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G100900 chr3D 53484988 53493183 8195 True 15136.000000 15136 100.000000 1 8196 1 chr3D.!!$R1 8195
1 TraesCS3D01G100900 chr3A 64787181 64795014 7833 True 13127.000000 13127 96.891000 344 8196 1 chr3A.!!$R1 7852
2 TraesCS3D01G100900 chr3A 64790546 64794204 3658 True 240.666667 265 93.788333 1239 4848 3 chr3A.!!$R2 3609
3 TraesCS3D01G100900 chr3B 83904742 83912424 7682 True 2464.800000 3376 94.264800 337 8196 5 chr3B.!!$R1 7859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.174617 GAGTCTTCCTCCAAGCCTCG 59.825 60.0 0.00 0.00 27.69 4.63 F
221 222 0.253044 AGTGCCGCATGGTCTATTGT 59.747 50.0 0.00 0.00 37.67 2.71 F
222 223 0.378257 GTGCCGCATGGTCTATTGTG 59.622 55.0 0.00 0.00 37.67 3.33 F
300 301 0.533308 TTACAACGCACGGGCTCTTT 60.533 50.0 8.62 0.00 38.10 2.52 F
309 310 0.685097 ACGGGCTCTTTTGCTAGTGA 59.315 50.0 0.00 0.00 0.00 3.41 F
567 572 0.839946 AGATCCAATCCCGACCCAAG 59.160 55.0 0.00 0.00 0.00 3.61 F
3829 3932 0.813184 CTTGTTAGCATGGGCCACAG 59.187 55.0 9.28 5.78 42.56 3.66 F
6592 6754 0.319641 GTTCTGACCGAGGTCCACAC 60.320 60.0 18.57 8.94 43.97 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1743 1.066430 GGTGGACGCTGACCTTGATTA 60.066 52.381 0.00 0.00 0.00 1.75 R
2564 2651 8.028354 CACAAATGTAAGATGTTTTGGCAGATA 58.972 33.333 0.00 0.00 34.23 1.98 R
3190 3281 2.766970 TCTGTTAAGTTGCGTTTGGC 57.233 45.000 0.00 0.00 43.96 4.52 R
3579 3682 9.840427 AACAAAACATAAGAGATTGGTAATTCG 57.160 29.630 0.00 0.00 0.00 3.34 R
3829 3932 6.261158 AGTTTTGACTTCTAAGGAGTCTTTGC 59.739 38.462 10.88 1.29 34.59 3.68 R
3916 4019 1.227380 CCCAGATGACGGCACTAGC 60.227 63.158 0.00 0.00 41.10 3.42 R
6965 7127 0.830648 TGTCTAGGTATGGGTGCAGC 59.169 55.000 7.55 7.55 0.00 5.25 R
7818 8003 1.032014 GCACAGAACACACCCAACAT 58.968 50.000 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.509855 TTTTATCGTTTATTATTCCACATGTGC 57.490 29.630 20.81 1.63 0.00 4.57
27 28 6.691754 ATCGTTTATTATTCCACATGTGCA 57.308 33.333 20.81 1.77 0.00 4.57
28 29 6.691754 TCGTTTATTATTCCACATGTGCAT 57.308 33.333 20.81 15.72 0.00 3.96
29 30 7.793927 TCGTTTATTATTCCACATGTGCATA 57.206 32.000 20.81 14.75 0.00 3.14
30 31 8.389779 TCGTTTATTATTCCACATGTGCATAT 57.610 30.769 20.81 14.07 0.00 1.78
31 32 8.288913 TCGTTTATTATTCCACATGTGCATATG 58.711 33.333 20.81 20.59 0.00 1.78
32 33 8.288913 CGTTTATTATTCCACATGTGCATATGA 58.711 33.333 27.77 8.92 0.00 2.15
33 34 9.616634 GTTTATTATTCCACATGTGCATATGAG 57.383 33.333 27.77 20.10 0.00 2.90
34 35 8.922931 TTATTATTCCACATGTGCATATGAGT 57.077 30.769 27.77 10.71 0.00 3.41
35 36 6.866010 TTATTCCACATGTGCATATGAGTC 57.134 37.500 27.77 0.00 0.00 3.36
36 37 4.492494 TTCCACATGTGCATATGAGTCT 57.508 40.909 27.77 4.50 0.00 3.24
37 38 4.492494 TCCACATGTGCATATGAGTCTT 57.508 40.909 27.77 4.12 0.00 3.01
38 39 4.445453 TCCACATGTGCATATGAGTCTTC 58.555 43.478 27.77 0.00 0.00 2.87
39 40 3.562973 CCACATGTGCATATGAGTCTTCC 59.437 47.826 27.77 0.00 0.00 3.46
40 41 4.449131 CACATGTGCATATGAGTCTTCCT 58.551 43.478 27.77 1.93 0.00 3.36
41 42 4.510711 CACATGTGCATATGAGTCTTCCTC 59.489 45.833 27.77 0.00 40.89 3.71
42 43 3.827008 TGTGCATATGAGTCTTCCTCC 57.173 47.619 6.97 0.00 39.65 4.30
43 44 3.106827 TGTGCATATGAGTCTTCCTCCA 58.893 45.455 6.97 0.00 39.65 3.86
44 45 3.519107 TGTGCATATGAGTCTTCCTCCAA 59.481 43.478 6.97 0.00 39.65 3.53
45 46 4.125703 GTGCATATGAGTCTTCCTCCAAG 58.874 47.826 6.97 0.00 39.65 3.61
46 47 3.137533 GCATATGAGTCTTCCTCCAAGC 58.862 50.000 6.97 0.00 39.65 4.01
47 48 3.737850 CATATGAGTCTTCCTCCAAGCC 58.262 50.000 0.00 0.00 39.65 4.35
48 49 1.963985 ATGAGTCTTCCTCCAAGCCT 58.036 50.000 0.00 0.00 39.65 4.58
49 50 1.270907 TGAGTCTTCCTCCAAGCCTC 58.729 55.000 0.00 0.00 37.58 4.70
50 51 0.174617 GAGTCTTCCTCCAAGCCTCG 59.825 60.000 0.00 0.00 27.69 4.63
51 52 0.543174 AGTCTTCCTCCAAGCCTCGT 60.543 55.000 0.00 0.00 31.26 4.18
52 53 0.321996 GTCTTCCTCCAAGCCTCGTT 59.678 55.000 0.00 0.00 31.26 3.85
53 54 1.056660 TCTTCCTCCAAGCCTCGTTT 58.943 50.000 0.00 0.00 31.26 3.60
54 55 1.420138 TCTTCCTCCAAGCCTCGTTTT 59.580 47.619 0.00 0.00 31.26 2.43
55 56 2.635915 TCTTCCTCCAAGCCTCGTTTTA 59.364 45.455 0.00 0.00 31.26 1.52
56 57 3.263425 TCTTCCTCCAAGCCTCGTTTTAT 59.737 43.478 0.00 0.00 31.26 1.40
57 58 3.713826 TCCTCCAAGCCTCGTTTTATT 57.286 42.857 0.00 0.00 0.00 1.40
58 59 4.028993 TCCTCCAAGCCTCGTTTTATTT 57.971 40.909 0.00 0.00 0.00 1.40
59 60 3.756434 TCCTCCAAGCCTCGTTTTATTTG 59.244 43.478 0.00 0.00 0.00 2.32
60 61 3.501950 CTCCAAGCCTCGTTTTATTTGC 58.498 45.455 0.00 0.00 0.00 3.68
61 62 2.887783 TCCAAGCCTCGTTTTATTTGCA 59.112 40.909 0.00 0.00 0.00 4.08
62 63 3.057596 TCCAAGCCTCGTTTTATTTGCAG 60.058 43.478 0.00 0.00 0.00 4.41
63 64 3.057596 CCAAGCCTCGTTTTATTTGCAGA 60.058 43.478 0.00 0.00 0.00 4.26
64 65 3.831715 AGCCTCGTTTTATTTGCAGAC 57.168 42.857 0.00 0.00 0.00 3.51
65 66 3.412386 AGCCTCGTTTTATTTGCAGACT 58.588 40.909 0.00 0.00 0.00 3.24
66 67 3.437049 AGCCTCGTTTTATTTGCAGACTC 59.563 43.478 0.00 0.00 0.00 3.36
67 68 3.725010 GCCTCGTTTTATTTGCAGACTCG 60.725 47.826 0.00 0.00 0.00 4.18
68 69 3.678072 CCTCGTTTTATTTGCAGACTCGA 59.322 43.478 0.00 0.00 0.00 4.04
69 70 4.201628 CCTCGTTTTATTTGCAGACTCGAG 60.202 45.833 11.84 11.84 40.83 4.04
70 71 4.552355 TCGTTTTATTTGCAGACTCGAGA 58.448 39.130 21.68 0.00 0.00 4.04
71 72 4.986034 TCGTTTTATTTGCAGACTCGAGAA 59.014 37.500 21.68 1.32 0.00 2.87
72 73 5.073478 CGTTTTATTTGCAGACTCGAGAAC 58.927 41.667 21.68 12.58 0.00 3.01
73 74 5.383130 GTTTTATTTGCAGACTCGAGAACC 58.617 41.667 21.68 7.76 0.00 3.62
74 75 2.839486 ATTTGCAGACTCGAGAACCA 57.161 45.000 21.68 7.54 0.00 3.67
75 76 2.839486 TTTGCAGACTCGAGAACCAT 57.161 45.000 21.68 0.00 0.00 3.55
76 77 3.953712 TTTGCAGACTCGAGAACCATA 57.046 42.857 21.68 3.14 0.00 2.74
77 78 3.510388 TTGCAGACTCGAGAACCATAG 57.490 47.619 21.68 2.61 0.00 2.23
78 79 1.135139 TGCAGACTCGAGAACCATAGC 59.865 52.381 21.68 12.69 0.00 2.97
79 80 1.135139 GCAGACTCGAGAACCATAGCA 59.865 52.381 21.68 0.00 0.00 3.49
80 81 2.797792 GCAGACTCGAGAACCATAGCAG 60.798 54.545 21.68 0.00 0.00 4.24
81 82 2.425312 CAGACTCGAGAACCATAGCAGT 59.575 50.000 21.68 0.00 0.00 4.40
82 83 3.093057 AGACTCGAGAACCATAGCAGTT 58.907 45.455 21.68 0.00 0.00 3.16
83 84 4.096532 CAGACTCGAGAACCATAGCAGTTA 59.903 45.833 21.68 0.00 0.00 2.24
84 85 4.890581 AGACTCGAGAACCATAGCAGTTAT 59.109 41.667 21.68 0.00 0.00 1.89
85 86 6.017026 CAGACTCGAGAACCATAGCAGTTATA 60.017 42.308 21.68 0.00 0.00 0.98
86 87 6.205853 AGACTCGAGAACCATAGCAGTTATAG 59.794 42.308 21.68 0.00 0.00 1.31
87 88 5.122512 TCGAGAACCATAGCAGTTATAGC 57.877 43.478 0.00 0.00 0.00 2.97
88 89 4.583073 TCGAGAACCATAGCAGTTATAGCA 59.417 41.667 0.00 0.00 0.00 3.49
89 90 5.243954 TCGAGAACCATAGCAGTTATAGCAT 59.756 40.000 0.00 0.00 0.00 3.79
90 91 5.347093 CGAGAACCATAGCAGTTATAGCATG 59.653 44.000 0.00 0.00 0.00 4.06
91 92 5.555017 AGAACCATAGCAGTTATAGCATGG 58.445 41.667 12.04 12.04 41.83 3.66
92 93 5.307976 AGAACCATAGCAGTTATAGCATGGA 59.692 40.000 17.30 0.00 40.20 3.41
93 94 5.567037 ACCATAGCAGTTATAGCATGGAA 57.433 39.130 17.30 0.00 40.20 3.53
94 95 5.308825 ACCATAGCAGTTATAGCATGGAAC 58.691 41.667 17.30 0.00 40.20 3.62
115 116 9.184523 TGGAACATAAACCTAATTATGAACAGG 57.815 33.333 12.55 0.00 43.05 4.00
116 117 8.630037 GGAACATAAACCTAATTATGAACAGGG 58.370 37.037 12.55 0.00 43.05 4.45
117 118 9.403583 GAACATAAACCTAATTATGAACAGGGA 57.596 33.333 12.55 0.00 43.05 4.20
118 119 8.980481 ACATAAACCTAATTATGAACAGGGAG 57.020 34.615 12.55 0.00 43.05 4.30
119 120 8.778059 ACATAAACCTAATTATGAACAGGGAGA 58.222 33.333 12.55 0.00 43.05 3.71
120 121 9.799106 CATAAACCTAATTATGAACAGGGAGAT 57.201 33.333 1.72 0.00 43.05 2.75
125 126 9.170890 ACCTAATTATGAACAGGGAGATAATCA 57.829 33.333 0.00 0.00 32.12 2.57
133 134 9.872684 ATGAACAGGGAGATAATCAATAACATT 57.127 29.630 0.00 0.00 0.00 2.71
134 135 9.699410 TGAACAGGGAGATAATCAATAACATTT 57.301 29.630 0.00 0.00 0.00 2.32
163 164 4.323569 CCTCTAGGGCATATCTCCTACA 57.676 50.000 0.00 0.00 34.75 2.74
164 165 4.277476 CCTCTAGGGCATATCTCCTACAG 58.723 52.174 0.00 0.00 34.75 2.74
165 166 4.017958 CCTCTAGGGCATATCTCCTACAGA 60.018 50.000 5.34 1.37 34.75 3.41
166 167 4.924625 TCTAGGGCATATCTCCTACAGAC 58.075 47.826 0.00 0.00 32.26 3.51
167 168 3.913370 AGGGCATATCTCCTACAGACT 57.087 47.619 0.00 0.00 32.26 3.24
168 169 3.773560 AGGGCATATCTCCTACAGACTC 58.226 50.000 0.00 0.00 32.26 3.36
169 170 2.829120 GGGCATATCTCCTACAGACTCC 59.171 54.545 0.00 0.00 32.26 3.85
170 171 3.501385 GGGCATATCTCCTACAGACTCCT 60.501 52.174 0.00 0.00 32.26 3.69
171 172 3.761752 GGCATATCTCCTACAGACTCCTC 59.238 52.174 0.00 0.00 32.26 3.71
172 173 3.761752 GCATATCTCCTACAGACTCCTCC 59.238 52.174 0.00 0.00 32.26 4.30
173 174 4.508405 GCATATCTCCTACAGACTCCTCCT 60.508 50.000 0.00 0.00 32.26 3.69
174 175 5.640147 CATATCTCCTACAGACTCCTCCTT 58.360 45.833 0.00 0.00 32.26 3.36
175 176 3.655615 TCTCCTACAGACTCCTCCTTC 57.344 52.381 0.00 0.00 0.00 3.46
176 177 2.092861 TCTCCTACAGACTCCTCCTTCG 60.093 54.545 0.00 0.00 0.00 3.79
177 178 1.634459 TCCTACAGACTCCTCCTTCGT 59.366 52.381 0.00 0.00 0.00 3.85
178 179 2.018515 CCTACAGACTCCTCCTTCGTC 58.981 57.143 0.00 0.00 0.00 4.20
179 180 1.666700 CTACAGACTCCTCCTTCGTCG 59.333 57.143 0.00 0.00 33.10 5.12
180 181 1.137825 CAGACTCCTCCTTCGTCGC 59.862 63.158 0.00 0.00 33.10 5.19
181 182 2.100603 GACTCCTCCTTCGTCGCG 59.899 66.667 0.00 0.00 0.00 5.87
182 183 3.398353 GACTCCTCCTTCGTCGCGG 62.398 68.421 6.13 0.00 0.00 6.46
183 184 4.856607 CTCCTCCTTCGTCGCGGC 62.857 72.222 6.13 1.93 0.00 6.53
213 214 3.869272 GCTCGAAGTGCCGCATGG 61.869 66.667 0.00 0.00 41.67 3.66
214 215 2.434884 CTCGAAGTGCCGCATGGT 60.435 61.111 0.00 0.00 37.67 3.55
215 216 2.434185 TCGAAGTGCCGCATGGTC 60.434 61.111 0.00 0.00 37.67 4.02
216 217 2.434884 CGAAGTGCCGCATGGTCT 60.435 61.111 0.00 0.00 37.67 3.85
217 218 1.153647 CGAAGTGCCGCATGGTCTA 60.154 57.895 0.00 0.00 37.67 2.59
218 219 0.530650 CGAAGTGCCGCATGGTCTAT 60.531 55.000 0.00 0.00 37.67 1.98
219 220 1.668419 GAAGTGCCGCATGGTCTATT 58.332 50.000 0.00 0.00 37.67 1.73
220 221 1.331756 GAAGTGCCGCATGGTCTATTG 59.668 52.381 0.00 0.00 37.67 1.90
221 222 0.253044 AGTGCCGCATGGTCTATTGT 59.747 50.000 0.00 0.00 37.67 2.71
222 223 0.378257 GTGCCGCATGGTCTATTGTG 59.622 55.000 0.00 0.00 37.67 3.33
223 224 0.747644 TGCCGCATGGTCTATTGTGG 60.748 55.000 0.00 0.00 37.67 4.17
224 225 0.748005 GCCGCATGGTCTATTGTGGT 60.748 55.000 0.00 0.00 37.67 4.16
225 226 1.299541 CCGCATGGTCTATTGTGGTC 58.700 55.000 0.00 0.00 0.00 4.02
226 227 1.134401 CCGCATGGTCTATTGTGGTCT 60.134 52.381 0.00 0.00 0.00 3.85
227 228 2.632377 CGCATGGTCTATTGTGGTCTT 58.368 47.619 0.00 0.00 0.00 3.01
228 229 2.352651 CGCATGGTCTATTGTGGTCTTG 59.647 50.000 0.00 0.00 0.00 3.02
229 230 3.609853 GCATGGTCTATTGTGGTCTTGA 58.390 45.455 0.00 0.00 0.00 3.02
230 231 3.624861 GCATGGTCTATTGTGGTCTTGAG 59.375 47.826 0.00 0.00 0.00 3.02
231 232 4.836825 CATGGTCTATTGTGGTCTTGAGT 58.163 43.478 0.00 0.00 0.00 3.41
232 233 4.271696 TGGTCTATTGTGGTCTTGAGTG 57.728 45.455 0.00 0.00 0.00 3.51
233 234 3.901222 TGGTCTATTGTGGTCTTGAGTGA 59.099 43.478 0.00 0.00 0.00 3.41
234 235 4.532126 TGGTCTATTGTGGTCTTGAGTGAT 59.468 41.667 0.00 0.00 0.00 3.06
235 236 4.872691 GGTCTATTGTGGTCTTGAGTGATG 59.127 45.833 0.00 0.00 0.00 3.07
236 237 4.872691 GTCTATTGTGGTCTTGAGTGATGG 59.127 45.833 0.00 0.00 0.00 3.51
237 238 3.795688 ATTGTGGTCTTGAGTGATGGT 57.204 42.857 0.00 0.00 0.00 3.55
238 239 3.576078 TTGTGGTCTTGAGTGATGGTT 57.424 42.857 0.00 0.00 0.00 3.67
239 240 2.849942 TGTGGTCTTGAGTGATGGTTG 58.150 47.619 0.00 0.00 0.00 3.77
240 241 2.172505 TGTGGTCTTGAGTGATGGTTGT 59.827 45.455 0.00 0.00 0.00 3.32
241 242 3.214328 GTGGTCTTGAGTGATGGTTGTT 58.786 45.455 0.00 0.00 0.00 2.83
242 243 3.251004 GTGGTCTTGAGTGATGGTTGTTC 59.749 47.826 0.00 0.00 0.00 3.18
243 244 3.118075 TGGTCTTGAGTGATGGTTGTTCA 60.118 43.478 0.00 0.00 0.00 3.18
244 245 3.499918 GGTCTTGAGTGATGGTTGTTCAG 59.500 47.826 0.00 0.00 0.00 3.02
245 246 4.130118 GTCTTGAGTGATGGTTGTTCAGT 58.870 43.478 0.00 0.00 0.00 3.41
246 247 4.576463 GTCTTGAGTGATGGTTGTTCAGTT 59.424 41.667 0.00 0.00 0.00 3.16
247 248 5.758296 GTCTTGAGTGATGGTTGTTCAGTTA 59.242 40.000 0.00 0.00 0.00 2.24
248 249 6.260050 GTCTTGAGTGATGGTTGTTCAGTTAA 59.740 38.462 0.00 0.00 0.00 2.01
249 250 6.483307 TCTTGAGTGATGGTTGTTCAGTTAAG 59.517 38.462 6.67 6.67 39.59 1.85
250 251 5.924356 TGAGTGATGGTTGTTCAGTTAAGA 58.076 37.500 0.00 0.00 0.00 2.10
251 252 5.991606 TGAGTGATGGTTGTTCAGTTAAGAG 59.008 40.000 0.00 0.00 0.00 2.85
252 253 5.930135 AGTGATGGTTGTTCAGTTAAGAGT 58.070 37.500 0.00 0.00 0.00 3.24
253 254 5.760253 AGTGATGGTTGTTCAGTTAAGAGTG 59.240 40.000 0.00 0.00 0.00 3.51
254 255 5.527582 GTGATGGTTGTTCAGTTAAGAGTGT 59.472 40.000 0.00 0.00 0.00 3.55
255 256 5.527214 TGATGGTTGTTCAGTTAAGAGTGTG 59.473 40.000 0.00 0.00 0.00 3.82
256 257 4.839121 TGGTTGTTCAGTTAAGAGTGTGT 58.161 39.130 0.00 0.00 0.00 3.72
257 258 5.250200 TGGTTGTTCAGTTAAGAGTGTGTT 58.750 37.500 0.00 0.00 0.00 3.32
258 259 5.123186 TGGTTGTTCAGTTAAGAGTGTGTTG 59.877 40.000 0.00 0.00 0.00 3.33
259 260 5.123344 GGTTGTTCAGTTAAGAGTGTGTTGT 59.877 40.000 0.00 0.00 0.00 3.32
260 261 5.794687 TGTTCAGTTAAGAGTGTGTTGTG 57.205 39.130 0.00 0.00 0.00 3.33
261 262 5.242434 TGTTCAGTTAAGAGTGTGTTGTGT 58.758 37.500 0.00 0.00 0.00 3.72
262 263 5.703592 TGTTCAGTTAAGAGTGTGTTGTGTT 59.296 36.000 0.00 0.00 0.00 3.32
263 264 6.205853 TGTTCAGTTAAGAGTGTGTTGTGTTT 59.794 34.615 0.00 0.00 0.00 2.83
264 265 6.811253 TCAGTTAAGAGTGTGTTGTGTTTT 57.189 33.333 0.00 0.00 0.00 2.43
265 266 7.209471 TCAGTTAAGAGTGTGTTGTGTTTTT 57.791 32.000 0.00 0.00 0.00 1.94
296 297 3.039588 CGTTACAACGCACGGGCT 61.040 61.111 8.62 0.00 46.06 5.19
297 298 2.858158 GTTACAACGCACGGGCTC 59.142 61.111 8.62 0.00 38.10 4.70
298 299 1.666872 GTTACAACGCACGGGCTCT 60.667 57.895 8.62 0.00 38.10 4.09
299 300 1.070105 TTACAACGCACGGGCTCTT 59.930 52.632 8.62 0.00 38.10 2.85
300 301 0.533308 TTACAACGCACGGGCTCTTT 60.533 50.000 8.62 0.00 38.10 2.52
301 302 0.533308 TACAACGCACGGGCTCTTTT 60.533 50.000 8.62 0.00 38.10 2.27
302 303 1.370414 CAACGCACGGGCTCTTTTG 60.370 57.895 8.62 1.62 38.10 2.44
303 304 3.194272 AACGCACGGGCTCTTTTGC 62.194 57.895 8.62 0.00 38.10 3.68
304 305 3.357079 CGCACGGGCTCTTTTGCT 61.357 61.111 8.62 0.00 38.10 3.91
305 306 2.032634 CGCACGGGCTCTTTTGCTA 61.033 57.895 8.62 0.00 38.10 3.49
306 307 1.796796 GCACGGGCTCTTTTGCTAG 59.203 57.895 0.00 0.00 36.96 3.42
307 308 0.955919 GCACGGGCTCTTTTGCTAGT 60.956 55.000 0.00 0.00 36.96 2.57
308 309 0.798776 CACGGGCTCTTTTGCTAGTG 59.201 55.000 0.00 0.00 35.51 2.74
309 310 0.685097 ACGGGCTCTTTTGCTAGTGA 59.315 50.000 0.00 0.00 0.00 3.41
310 311 1.279271 ACGGGCTCTTTTGCTAGTGAT 59.721 47.619 0.00 0.00 0.00 3.06
311 312 1.936547 CGGGCTCTTTTGCTAGTGATC 59.063 52.381 0.00 0.00 0.00 2.92
312 313 2.677902 CGGGCTCTTTTGCTAGTGATCA 60.678 50.000 0.00 0.00 0.00 2.92
313 314 2.680339 GGGCTCTTTTGCTAGTGATCAC 59.320 50.000 18.47 18.47 0.00 3.06
314 315 2.349886 GGCTCTTTTGCTAGTGATCACG 59.650 50.000 19.85 8.22 36.20 4.35
315 316 3.254060 GCTCTTTTGCTAGTGATCACGA 58.746 45.455 19.85 14.18 36.20 4.35
316 317 3.305629 GCTCTTTTGCTAGTGATCACGAG 59.694 47.826 26.33 26.33 37.16 4.18
317 318 4.489810 CTCTTTTGCTAGTGATCACGAGT 58.510 43.478 29.26 13.32 36.59 4.18
318 319 4.237724 TCTTTTGCTAGTGATCACGAGTG 58.762 43.478 29.26 17.70 36.59 3.51
319 320 1.996292 TTGCTAGTGATCACGAGTGC 58.004 50.000 29.26 24.43 36.59 4.40
320 321 0.887933 TGCTAGTGATCACGAGTGCA 59.112 50.000 29.26 26.15 36.59 4.57
321 322 1.478105 TGCTAGTGATCACGAGTGCAT 59.522 47.619 29.26 11.36 36.59 3.96
322 323 2.094026 TGCTAGTGATCACGAGTGCATT 60.094 45.455 29.26 10.71 36.59 3.56
323 324 2.932614 GCTAGTGATCACGAGTGCATTT 59.067 45.455 29.26 10.07 36.59 2.32
324 325 3.372206 GCTAGTGATCACGAGTGCATTTT 59.628 43.478 29.26 9.42 36.59 1.82
325 326 4.566759 GCTAGTGATCACGAGTGCATTTTA 59.433 41.667 29.26 9.99 36.59 1.52
326 327 4.928661 AGTGATCACGAGTGCATTTTAC 57.071 40.909 19.85 0.00 36.20 2.01
327 328 4.314961 AGTGATCACGAGTGCATTTTACA 58.685 39.130 19.85 0.00 36.20 2.41
328 329 4.754618 AGTGATCACGAGTGCATTTTACAA 59.245 37.500 19.85 0.00 36.20 2.41
329 330 5.238432 AGTGATCACGAGTGCATTTTACAAA 59.762 36.000 19.85 0.00 36.20 2.83
330 331 5.339611 GTGATCACGAGTGCATTTTACAAAC 59.660 40.000 10.69 0.00 0.00 2.93
331 332 4.884458 TCACGAGTGCATTTTACAAACA 57.116 36.364 0.00 0.00 0.00 2.83
332 333 4.593157 TCACGAGTGCATTTTACAAACAC 58.407 39.130 0.00 0.00 0.00 3.32
333 334 3.417321 CACGAGTGCATTTTACAAACACG 59.583 43.478 0.00 0.00 36.38 4.49
334 335 2.400408 CGAGTGCATTTTACAAACACGC 59.600 45.455 0.00 0.00 36.38 5.34
335 336 2.724174 GAGTGCATTTTACAAACACGCC 59.276 45.455 0.00 0.00 36.38 5.68
336 337 2.360801 AGTGCATTTTACAAACACGCCT 59.639 40.909 0.00 0.00 36.38 5.52
337 338 3.566322 AGTGCATTTTACAAACACGCCTA 59.434 39.130 0.00 0.00 36.38 3.93
338 339 3.911964 GTGCATTTTACAAACACGCCTAG 59.088 43.478 0.00 0.00 0.00 3.02
339 340 3.815962 TGCATTTTACAAACACGCCTAGA 59.184 39.130 0.00 0.00 0.00 2.43
340 341 4.276183 TGCATTTTACAAACACGCCTAGAA 59.724 37.500 0.00 0.00 0.00 2.10
341 342 4.851558 GCATTTTACAAACACGCCTAGAAG 59.148 41.667 0.00 0.00 0.00 2.85
342 343 5.334569 GCATTTTACAAACACGCCTAGAAGA 60.335 40.000 0.00 0.00 0.00 2.87
343 344 5.917541 TTTTACAAACACGCCTAGAAGAG 57.082 39.130 0.00 0.00 0.00 2.85
348 349 3.528597 AACACGCCTAGAAGAGATTCC 57.471 47.619 0.00 0.00 0.00 3.01
567 572 0.839946 AGATCCAATCCCGACCCAAG 59.160 55.000 0.00 0.00 0.00 3.61
589 594 2.158813 CCCCTTGCGGCTCTAAAATCTA 60.159 50.000 0.00 0.00 0.00 1.98
838 873 3.842923 ACCTCATCGCTGCTCCCG 61.843 66.667 0.00 0.00 0.00 5.14
899 934 1.439679 CGCTGAGGTTTTGAGGTACC 58.560 55.000 2.73 2.73 34.54 3.34
905 944 3.117663 TGAGGTTTTGAGGTACCAGCTTT 60.118 43.478 15.94 0.00 36.87 3.51
940 979 6.024552 TGTTTATTGATTTCCTGGCTGTTC 57.975 37.500 0.00 0.00 0.00 3.18
1084 1123 2.345760 CCAGCGCCTTGGAAAGCAT 61.346 57.895 10.05 0.00 44.44 3.79
1155 1194 1.376683 GTATGACAAGCCGGGTGCA 60.377 57.895 7.07 6.76 44.83 4.57
1319 1370 4.374702 GCAACAGACGGCACAGCG 62.375 66.667 0.00 0.00 0.00 5.18
1476 1563 3.452627 CACTAGCTCCTCAGTACCCAAAT 59.547 47.826 0.00 0.00 0.00 2.32
1646 1733 3.364441 GCAGCCAACGATGCCACA 61.364 61.111 0.00 0.00 36.41 4.17
1656 1743 1.210478 ACGATGCCACAAGGAGCTTAT 59.790 47.619 0.00 0.00 36.89 1.73
2072 2159 2.106511 AGCAGACTGGCTTTTCCTTACA 59.893 45.455 4.26 0.00 42.71 2.41
2630 2717 4.349663 TTGTGAAGTTCCTTCGTTTGTG 57.650 40.909 0.00 0.00 42.78 3.33
3190 3281 6.495706 TCTGAACTATAGTTGACACGCTATG 58.504 40.000 22.68 0.50 38.56 2.23
3459 3562 7.003482 TGATATCTGCAGTTGGCCATAAATTA 58.997 34.615 14.67 0.00 43.89 1.40
3579 3682 5.289675 CGACATCACCTGTTGATTTCTAGTC 59.710 44.000 0.89 0.00 42.87 2.59
3829 3932 0.813184 CTTGTTAGCATGGGCCACAG 59.187 55.000 9.28 5.78 42.56 3.66
3916 4019 6.533730 TGTCATGCTGGATACCCTAATTTAG 58.466 40.000 0.00 0.00 0.00 1.85
3929 4032 4.503296 CCCTAATTTAGCTAGTGCCGTCAT 60.503 45.833 0.00 0.00 40.80 3.06
4630 4733 8.119226 GCAATGTAGACAGTTGATTCTCAATAC 58.881 37.037 8.22 0.00 38.79 1.89
4633 4736 9.725019 ATGTAGACAGTTGATTCTCAATACAAA 57.275 29.630 5.06 0.00 38.79 2.83
4758 4861 5.997129 TGCAATGTAGACAGTTGATTCTCAA 59.003 36.000 0.00 0.00 33.32 3.02
5160 5263 8.749026 AGATTCCTCGTAATAGACAAACTCTA 57.251 34.615 0.00 0.00 35.84 2.43
5464 5572 2.879002 TGGAGCAGATTCTTAGAGCG 57.121 50.000 0.00 0.00 0.00 5.03
6072 6180 1.761198 GGATAGTCCTGGTGGTGGTAC 59.239 57.143 0.00 0.00 32.53 3.34
6592 6754 0.319641 GTTCTGACCGAGGTCCACAC 60.320 60.000 18.57 8.94 43.97 3.82
6887 7049 5.010282 GGGTAAGATCTGGTTTTGATGTGT 58.990 41.667 0.00 0.00 0.00 3.72
6963 7125 2.050144 ACCTGGTTCAGTGTCTGATGT 58.950 47.619 0.00 0.00 40.39 3.06
6965 7127 2.810274 CCTGGTTCAGTGTCTGATGTTG 59.190 50.000 0.24 0.00 40.39 3.33
7127 7289 2.168521 CCTTCCCAAGCGACTGATCTAA 59.831 50.000 0.00 0.00 0.00 2.10
7138 7300 4.679639 GCGACTGATCTAACAATACCACCA 60.680 45.833 0.00 0.00 0.00 4.17
7313 7475 1.202498 GCTAAGTTCTACCGCCGGATT 60.202 52.381 11.71 0.00 0.00 3.01
7314 7476 2.740904 GCTAAGTTCTACCGCCGGATTT 60.741 50.000 11.71 0.00 0.00 2.17
7473 7635 4.098155 TGGGCAGTAGTTTACAGGACATA 58.902 43.478 0.00 0.00 0.00 2.29
7496 7658 2.680339 GTCAAAGCTACTTGATCTGCCC 59.320 50.000 4.22 0.00 37.63 5.36
7497 7659 2.573462 TCAAAGCTACTTGATCTGCCCT 59.427 45.455 0.00 0.00 30.31 5.19
7498 7660 2.941720 CAAAGCTACTTGATCTGCCCTC 59.058 50.000 0.00 0.00 0.00 4.30
7500 7662 2.476199 AGCTACTTGATCTGCCCTCTT 58.524 47.619 0.00 0.00 0.00 2.85
7501 7663 2.843113 AGCTACTTGATCTGCCCTCTTT 59.157 45.455 0.00 0.00 0.00 2.52
7600 7762 9.866655 AGATTATGTGGGTACATATTGTTGAAT 57.133 29.630 0.00 0.00 46.22 2.57
7619 7781 4.534500 TGAATTAGCTCAGGTACAGGGAAA 59.466 41.667 0.00 0.00 0.00 3.13
7622 7784 2.269940 AGCTCAGGTACAGGGAAATGT 58.730 47.619 0.00 0.00 37.19 2.71
7669 7831 9.932207 TGCACTGAAATATTTGAAATTCTCATT 57.068 25.926 5.17 0.00 32.78 2.57
7711 7873 9.121658 TCTTGTTCTGTATACTGTATAGACTGG 57.878 37.037 7.75 0.00 0.00 4.00
7712 7874 7.273320 TGTTCTGTATACTGTATAGACTGGC 57.727 40.000 7.75 0.00 0.00 4.85
7714 7876 7.340999 TGTTCTGTATACTGTATAGACTGGCAA 59.659 37.037 7.75 0.00 0.00 4.52
7715 7877 7.273320 TCTGTATACTGTATAGACTGGCAAC 57.727 40.000 7.75 0.00 0.00 4.17
7719 7898 3.353557 ACTGTATAGACTGGCAACGAGA 58.646 45.455 0.00 0.00 42.51 4.04
7733 7912 4.386350 GGCAACGAGAAAGAGTAAGAGTTC 59.614 45.833 0.00 0.00 0.00 3.01
7734 7913 4.982916 GCAACGAGAAAGAGTAAGAGTTCA 59.017 41.667 0.00 0.00 0.00 3.18
7745 7924 3.495001 AGTAAGAGTTCAGCGTTTTCTGC 59.505 43.478 0.00 0.00 34.19 4.26
7803 7988 9.140286 CGAATATAATGGTCATGTACTAGGTTG 57.860 37.037 0.00 0.00 0.00 3.77
7806 7991 3.328382 TGGTCATGTACTAGGTTGTGC 57.672 47.619 0.00 0.00 0.00 4.57
7812 7997 5.577164 GTCATGTACTAGGTTGTGCTACAAG 59.423 44.000 0.00 0.00 39.00 3.16
7818 8003 5.442391 ACTAGGTTGTGCTACAAGGAAAAA 58.558 37.500 0.00 0.00 39.00 1.94
7819 8004 6.068670 ACTAGGTTGTGCTACAAGGAAAAAT 58.931 36.000 0.00 0.00 39.00 1.82
7840 8026 1.932156 TTGGGTGTGTTCTGTGCCCT 61.932 55.000 0.00 0.00 39.97 5.19
7869 8055 8.781196 CAATCTAGAATATCATGGTTCTTGTGG 58.219 37.037 12.08 0.00 36.23 4.17
7922 8108 3.321648 TGGTGCGCAGAGGTGGAT 61.322 61.111 12.22 0.00 0.00 3.41
8101 8295 3.079578 CTGCACTCATGTTCCATTGTCT 58.920 45.455 0.00 0.00 0.00 3.41
8147 8341 0.250727 TTGCCTTGTCCAGTAGTGGC 60.251 55.000 12.14 7.80 44.60 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.678199 TGCACATGTGGAATAATAAACGATAAA 58.322 29.630 26.55 0.00 0.00 1.40
5 6 6.691754 ATGCACATGTGGAATAATAAACGA 57.308 33.333 24.45 0.00 33.77 3.85
6 7 8.288913 TCATATGCACATGTGGAATAATAAACG 58.711 33.333 24.45 6.75 33.77 3.60
7 8 9.616634 CTCATATGCACATGTGGAATAATAAAC 57.383 33.333 24.45 5.04 33.77 2.01
8 9 9.353431 ACTCATATGCACATGTGGAATAATAAA 57.647 29.630 24.45 8.78 33.77 1.40
9 10 8.922931 ACTCATATGCACATGTGGAATAATAA 57.077 30.769 24.45 7.16 33.77 1.40
10 11 8.377799 AGACTCATATGCACATGTGGAATAATA 58.622 33.333 24.45 12.17 33.77 0.98
11 12 7.229308 AGACTCATATGCACATGTGGAATAAT 58.771 34.615 24.45 14.54 33.77 1.28
12 13 6.594744 AGACTCATATGCACATGTGGAATAA 58.405 36.000 24.45 12.89 33.77 1.40
13 14 6.178607 AGACTCATATGCACATGTGGAATA 57.821 37.500 24.45 16.03 33.77 1.75
14 15 5.045012 AGACTCATATGCACATGTGGAAT 57.955 39.130 24.45 15.09 33.77 3.01
15 16 4.492494 AGACTCATATGCACATGTGGAA 57.508 40.909 24.45 13.52 33.77 3.53
16 17 4.445453 GAAGACTCATATGCACATGTGGA 58.555 43.478 26.55 24.83 31.80 4.02
17 18 3.562973 GGAAGACTCATATGCACATGTGG 59.437 47.826 26.55 10.13 31.80 4.17
18 19 4.449131 AGGAAGACTCATATGCACATGTG 58.551 43.478 21.83 21.83 0.00 3.21
19 20 4.701765 GAGGAAGACTCATATGCACATGT 58.298 43.478 4.61 0.00 45.85 3.21
33 34 0.321996 AACGAGGCTTGGAGGAAGAC 59.678 55.000 6.71 0.00 40.53 3.01
34 35 1.056660 AAACGAGGCTTGGAGGAAGA 58.943 50.000 6.71 0.00 32.82 2.87
35 36 1.897560 AAAACGAGGCTTGGAGGAAG 58.102 50.000 6.71 0.00 34.41 3.46
36 37 3.713826 ATAAAACGAGGCTTGGAGGAA 57.286 42.857 6.71 0.00 0.00 3.36
37 38 3.713826 AATAAAACGAGGCTTGGAGGA 57.286 42.857 6.71 0.00 0.00 3.71
38 39 3.673323 GCAAATAAAACGAGGCTTGGAGG 60.673 47.826 6.71 0.00 0.00 4.30
39 40 3.057596 TGCAAATAAAACGAGGCTTGGAG 60.058 43.478 6.71 0.00 0.00 3.86
40 41 2.887783 TGCAAATAAAACGAGGCTTGGA 59.112 40.909 6.71 0.00 0.00 3.53
41 42 3.057596 TCTGCAAATAAAACGAGGCTTGG 60.058 43.478 6.71 0.00 0.00 3.61
42 43 3.914364 GTCTGCAAATAAAACGAGGCTTG 59.086 43.478 0.00 0.00 0.00 4.01
43 44 3.821033 AGTCTGCAAATAAAACGAGGCTT 59.179 39.130 0.00 0.00 0.00 4.35
44 45 3.412386 AGTCTGCAAATAAAACGAGGCT 58.588 40.909 0.00 0.00 0.00 4.58
45 46 3.725010 CGAGTCTGCAAATAAAACGAGGC 60.725 47.826 0.00 0.00 0.00 4.70
46 47 3.678072 TCGAGTCTGCAAATAAAACGAGG 59.322 43.478 0.00 0.00 0.00 4.63
47 48 4.621460 TCTCGAGTCTGCAAATAAAACGAG 59.379 41.667 13.13 0.00 43.50 4.18
48 49 4.552355 TCTCGAGTCTGCAAATAAAACGA 58.448 39.130 13.13 0.00 0.00 3.85
49 50 4.903638 TCTCGAGTCTGCAAATAAAACG 57.096 40.909 13.13 0.00 0.00 3.60
50 51 5.049680 TGGTTCTCGAGTCTGCAAATAAAAC 60.050 40.000 13.13 4.60 0.00 2.43
51 52 5.060506 TGGTTCTCGAGTCTGCAAATAAAA 58.939 37.500 13.13 0.00 0.00 1.52
52 53 4.637276 TGGTTCTCGAGTCTGCAAATAAA 58.363 39.130 13.13 0.00 0.00 1.40
53 54 4.265904 TGGTTCTCGAGTCTGCAAATAA 57.734 40.909 13.13 0.00 0.00 1.40
54 55 3.953712 TGGTTCTCGAGTCTGCAAATA 57.046 42.857 13.13 0.00 0.00 1.40
55 56 2.839486 TGGTTCTCGAGTCTGCAAAT 57.161 45.000 13.13 0.00 0.00 2.32
56 57 2.839486 ATGGTTCTCGAGTCTGCAAA 57.161 45.000 13.13 0.00 0.00 3.68
57 58 2.417379 GCTATGGTTCTCGAGTCTGCAA 60.417 50.000 13.13 0.00 0.00 4.08
58 59 1.135139 GCTATGGTTCTCGAGTCTGCA 59.865 52.381 13.13 2.65 0.00 4.41
59 60 1.135139 TGCTATGGTTCTCGAGTCTGC 59.865 52.381 13.13 8.91 0.00 4.26
60 61 2.425312 ACTGCTATGGTTCTCGAGTCTG 59.575 50.000 13.13 0.00 0.00 3.51
61 62 2.729194 ACTGCTATGGTTCTCGAGTCT 58.271 47.619 13.13 0.00 0.00 3.24
62 63 3.512033 AACTGCTATGGTTCTCGAGTC 57.488 47.619 13.13 7.05 0.00 3.36
63 64 5.278561 GCTATAACTGCTATGGTTCTCGAGT 60.279 44.000 13.13 0.00 0.00 4.18
64 65 5.157781 GCTATAACTGCTATGGTTCTCGAG 58.842 45.833 5.93 5.93 0.00 4.04
65 66 4.583073 TGCTATAACTGCTATGGTTCTCGA 59.417 41.667 0.00 0.00 0.00 4.04
66 67 4.871513 TGCTATAACTGCTATGGTTCTCG 58.128 43.478 0.00 0.00 0.00 4.04
67 68 5.641209 CCATGCTATAACTGCTATGGTTCTC 59.359 44.000 0.00 0.00 35.93 2.87
68 69 5.307976 TCCATGCTATAACTGCTATGGTTCT 59.692 40.000 0.00 0.00 38.72 3.01
69 70 5.551233 TCCATGCTATAACTGCTATGGTTC 58.449 41.667 0.00 0.00 38.72 3.62
70 71 5.567037 TCCATGCTATAACTGCTATGGTT 57.433 39.130 0.00 0.00 38.72 3.67
71 72 5.163205 TGTTCCATGCTATAACTGCTATGGT 60.163 40.000 0.00 0.00 38.72 3.55
72 73 5.308014 TGTTCCATGCTATAACTGCTATGG 58.692 41.667 0.00 0.00 38.84 2.74
73 74 8.552083 TTATGTTCCATGCTATAACTGCTATG 57.448 34.615 0.00 0.00 0.00 2.23
74 75 9.003658 GTTTATGTTCCATGCTATAACTGCTAT 57.996 33.333 0.00 0.00 0.00 2.97
75 76 7.444183 GGTTTATGTTCCATGCTATAACTGCTA 59.556 37.037 0.00 0.00 0.00 3.49
76 77 6.263168 GGTTTATGTTCCATGCTATAACTGCT 59.737 38.462 0.00 0.00 0.00 4.24
77 78 6.263168 AGGTTTATGTTCCATGCTATAACTGC 59.737 38.462 0.00 0.00 0.00 4.40
78 79 7.807977 AGGTTTATGTTCCATGCTATAACTG 57.192 36.000 0.00 0.00 0.00 3.16
85 86 8.995027 TCATAATTAGGTTTATGTTCCATGCT 57.005 30.769 0.00 0.00 39.51 3.79
86 87 9.463443 GTTCATAATTAGGTTTATGTTCCATGC 57.537 33.333 0.00 0.00 39.51 4.06
89 90 9.184523 CCTGTTCATAATTAGGTTTATGTTCCA 57.815 33.333 0.00 1.14 39.51 3.53
90 91 8.630037 CCCTGTTCATAATTAGGTTTATGTTCC 58.370 37.037 0.00 0.00 39.51 3.62
91 92 9.403583 TCCCTGTTCATAATTAGGTTTATGTTC 57.596 33.333 0.00 1.55 39.51 3.18
92 93 9.408648 CTCCCTGTTCATAATTAGGTTTATGTT 57.591 33.333 0.00 0.00 39.51 2.71
93 94 8.778059 TCTCCCTGTTCATAATTAGGTTTATGT 58.222 33.333 0.00 0.00 39.51 2.29
94 95 9.799106 ATCTCCCTGTTCATAATTAGGTTTATG 57.201 33.333 0.00 0.00 39.75 1.90
99 100 9.170890 TGATTATCTCCCTGTTCATAATTAGGT 57.829 33.333 0.00 0.00 0.00 3.08
107 108 9.872684 AATGTTATTGATTATCTCCCTGTTCAT 57.127 29.630 0.00 0.00 0.00 2.57
108 109 9.699410 AAATGTTATTGATTATCTCCCTGTTCA 57.301 29.630 0.00 0.00 0.00 3.18
142 143 4.017958 TCTGTAGGAGATATGCCCTAGAGG 60.018 50.000 17.26 0.00 43.05 3.69
143 144 4.947388 GTCTGTAGGAGATATGCCCTAGAG 59.053 50.000 13.76 13.76 43.76 2.43
144 145 4.604050 AGTCTGTAGGAGATATGCCCTAGA 59.396 45.833 0.00 0.00 35.84 2.43
145 146 4.929479 AGTCTGTAGGAGATATGCCCTAG 58.071 47.826 0.00 0.00 35.84 3.02
146 147 4.263994 GGAGTCTGTAGGAGATATGCCCTA 60.264 50.000 0.00 0.00 34.11 3.53
147 148 3.501385 GGAGTCTGTAGGAGATATGCCCT 60.501 52.174 0.00 0.00 36.60 5.19
148 149 2.829120 GGAGTCTGTAGGAGATATGCCC 59.171 54.545 0.00 0.00 31.63 5.36
149 150 3.761752 GAGGAGTCTGTAGGAGATATGCC 59.238 52.174 0.00 0.00 31.63 4.40
150 151 3.761752 GGAGGAGTCTGTAGGAGATATGC 59.238 52.174 0.00 0.00 31.63 3.14
151 152 5.255397 AGGAGGAGTCTGTAGGAGATATG 57.745 47.826 0.00 0.00 31.63 1.78
152 153 5.514136 CGAAGGAGGAGTCTGTAGGAGATAT 60.514 48.000 0.00 0.00 31.63 1.63
153 154 4.202377 CGAAGGAGGAGTCTGTAGGAGATA 60.202 50.000 0.00 0.00 31.63 1.98
154 155 3.434453 CGAAGGAGGAGTCTGTAGGAGAT 60.434 52.174 0.00 0.00 31.63 2.75
155 156 2.092861 CGAAGGAGGAGTCTGTAGGAGA 60.093 54.545 0.00 0.00 0.00 3.71
156 157 2.294074 CGAAGGAGGAGTCTGTAGGAG 58.706 57.143 0.00 0.00 0.00 3.69
157 158 1.634459 ACGAAGGAGGAGTCTGTAGGA 59.366 52.381 0.00 0.00 0.00 2.94
158 159 2.018515 GACGAAGGAGGAGTCTGTAGG 58.981 57.143 0.00 0.00 32.58 3.18
159 160 1.666700 CGACGAAGGAGGAGTCTGTAG 59.333 57.143 0.00 0.00 33.10 2.74
160 161 1.735386 CGACGAAGGAGGAGTCTGTA 58.265 55.000 0.00 0.00 33.10 2.74
161 162 1.587933 GCGACGAAGGAGGAGTCTGT 61.588 60.000 0.00 0.00 33.10 3.41
162 163 1.137825 GCGACGAAGGAGGAGTCTG 59.862 63.158 0.00 0.00 33.10 3.51
163 164 2.400158 CGCGACGAAGGAGGAGTCT 61.400 63.158 0.00 0.00 33.10 3.24
164 165 2.100603 CGCGACGAAGGAGGAGTC 59.899 66.667 0.00 0.00 0.00 3.36
165 166 3.441290 CCGCGACGAAGGAGGAGT 61.441 66.667 8.23 0.00 0.00 3.85
166 167 4.856607 GCCGCGACGAAGGAGGAG 62.857 72.222 8.23 0.00 0.00 3.69
194 195 2.816958 ATGCGGCACTTCGAGCAG 60.817 61.111 4.03 0.00 43.20 4.24
195 196 3.120385 CATGCGGCACTTCGAGCA 61.120 61.111 4.03 0.00 44.13 4.26
196 197 3.869272 CCATGCGGCACTTCGAGC 61.869 66.667 4.03 0.00 0.00 5.03
197 198 2.434884 ACCATGCGGCACTTCGAG 60.435 61.111 4.03 0.00 34.57 4.04
198 199 1.600511 TAGACCATGCGGCACTTCGA 61.601 55.000 4.03 0.00 34.57 3.71
199 200 0.530650 ATAGACCATGCGGCACTTCG 60.531 55.000 4.03 0.00 34.57 3.79
200 201 1.331756 CAATAGACCATGCGGCACTTC 59.668 52.381 4.03 1.67 34.57 3.01
201 202 1.340017 ACAATAGACCATGCGGCACTT 60.340 47.619 4.03 0.00 34.57 3.16
202 203 0.253044 ACAATAGACCATGCGGCACT 59.747 50.000 4.03 0.00 34.57 4.40
203 204 0.378257 CACAATAGACCATGCGGCAC 59.622 55.000 4.03 0.00 34.57 5.01
204 205 0.747644 CCACAATAGACCATGCGGCA 60.748 55.000 4.58 4.58 34.57 5.69
205 206 0.748005 ACCACAATAGACCATGCGGC 60.748 55.000 0.00 0.00 34.57 6.53
206 207 1.134401 AGACCACAATAGACCATGCGG 60.134 52.381 0.00 0.00 38.77 5.69
207 208 2.315925 AGACCACAATAGACCATGCG 57.684 50.000 0.00 0.00 0.00 4.73
208 209 3.609853 TCAAGACCACAATAGACCATGC 58.390 45.455 0.00 0.00 0.00 4.06
209 210 4.633126 CACTCAAGACCACAATAGACCATG 59.367 45.833 0.00 0.00 0.00 3.66
210 211 4.532126 TCACTCAAGACCACAATAGACCAT 59.468 41.667 0.00 0.00 0.00 3.55
211 212 3.901222 TCACTCAAGACCACAATAGACCA 59.099 43.478 0.00 0.00 0.00 4.02
212 213 4.537135 TCACTCAAGACCACAATAGACC 57.463 45.455 0.00 0.00 0.00 3.85
213 214 4.872691 CCATCACTCAAGACCACAATAGAC 59.127 45.833 0.00 0.00 0.00 2.59
214 215 4.532126 ACCATCACTCAAGACCACAATAGA 59.468 41.667 0.00 0.00 0.00 1.98
215 216 4.836825 ACCATCACTCAAGACCACAATAG 58.163 43.478 0.00 0.00 0.00 1.73
216 217 4.908601 ACCATCACTCAAGACCACAATA 57.091 40.909 0.00 0.00 0.00 1.90
217 218 3.795688 ACCATCACTCAAGACCACAAT 57.204 42.857 0.00 0.00 0.00 2.71
218 219 3.213506 CAACCATCACTCAAGACCACAA 58.786 45.455 0.00 0.00 0.00 3.33
219 220 2.172505 ACAACCATCACTCAAGACCACA 59.827 45.455 0.00 0.00 0.00 4.17
220 221 2.851195 ACAACCATCACTCAAGACCAC 58.149 47.619 0.00 0.00 0.00 4.16
221 222 3.118075 TGAACAACCATCACTCAAGACCA 60.118 43.478 0.00 0.00 0.00 4.02
222 223 3.476552 TGAACAACCATCACTCAAGACC 58.523 45.455 0.00 0.00 0.00 3.85
223 224 4.130118 ACTGAACAACCATCACTCAAGAC 58.870 43.478 0.00 0.00 0.00 3.01
224 225 4.422073 ACTGAACAACCATCACTCAAGA 57.578 40.909 0.00 0.00 0.00 3.02
225 226 6.483307 TCTTAACTGAACAACCATCACTCAAG 59.517 38.462 0.00 0.00 0.00 3.02
226 227 6.353323 TCTTAACTGAACAACCATCACTCAA 58.647 36.000 0.00 0.00 0.00 3.02
227 228 5.924356 TCTTAACTGAACAACCATCACTCA 58.076 37.500 0.00 0.00 0.00 3.41
228 229 5.992217 ACTCTTAACTGAACAACCATCACTC 59.008 40.000 0.00 0.00 0.00 3.51
229 230 5.760253 CACTCTTAACTGAACAACCATCACT 59.240 40.000 0.00 0.00 0.00 3.41
230 231 5.527582 ACACTCTTAACTGAACAACCATCAC 59.472 40.000 0.00 0.00 0.00 3.06
231 232 5.527214 CACACTCTTAACTGAACAACCATCA 59.473 40.000 0.00 0.00 0.00 3.07
232 233 5.527582 ACACACTCTTAACTGAACAACCATC 59.472 40.000 0.00 0.00 0.00 3.51
233 234 5.437060 ACACACTCTTAACTGAACAACCAT 58.563 37.500 0.00 0.00 0.00 3.55
234 235 4.839121 ACACACTCTTAACTGAACAACCA 58.161 39.130 0.00 0.00 0.00 3.67
235 236 5.123344 ACAACACACTCTTAACTGAACAACC 59.877 40.000 0.00 0.00 0.00 3.77
236 237 6.021596 CACAACACACTCTTAACTGAACAAC 58.978 40.000 0.00 0.00 0.00 3.32
237 238 5.703592 ACACAACACACTCTTAACTGAACAA 59.296 36.000 0.00 0.00 0.00 2.83
238 239 5.242434 ACACAACACACTCTTAACTGAACA 58.758 37.500 0.00 0.00 0.00 3.18
239 240 5.796350 ACACAACACACTCTTAACTGAAC 57.204 39.130 0.00 0.00 0.00 3.18
240 241 6.811253 AAACACAACACACTCTTAACTGAA 57.189 33.333 0.00 0.00 0.00 3.02
241 242 6.811253 AAAACACAACACACTCTTAACTGA 57.189 33.333 0.00 0.00 0.00 3.41
280 281 1.226030 AAGAGCCCGTGCGTTGTAAC 61.226 55.000 0.00 0.00 44.33 2.50
281 282 0.533308 AAAGAGCCCGTGCGTTGTAA 60.533 50.000 0.00 0.00 44.33 2.41
282 283 0.533308 AAAAGAGCCCGTGCGTTGTA 60.533 50.000 0.00 0.00 44.33 2.41
283 284 1.822186 AAAAGAGCCCGTGCGTTGT 60.822 52.632 0.00 0.00 44.33 3.32
284 285 1.370414 CAAAAGAGCCCGTGCGTTG 60.370 57.895 0.00 0.00 44.33 4.10
285 286 3.030652 CAAAAGAGCCCGTGCGTT 58.969 55.556 0.00 0.00 44.33 4.84
286 287 2.725203 TAGCAAAAGAGCCCGTGCGT 62.725 55.000 0.00 0.00 44.33 5.24
287 288 1.970917 CTAGCAAAAGAGCCCGTGCG 61.971 60.000 0.00 0.00 44.33 5.34
288 289 0.955919 ACTAGCAAAAGAGCCCGTGC 60.956 55.000 0.00 0.00 37.26 5.34
289 290 0.798776 CACTAGCAAAAGAGCCCGTG 59.201 55.000 0.00 0.00 34.23 4.94
290 291 0.685097 TCACTAGCAAAAGAGCCCGT 59.315 50.000 0.00 0.00 34.23 5.28
291 292 1.936547 GATCACTAGCAAAAGAGCCCG 59.063 52.381 0.00 0.00 34.23 6.13
292 293 2.680339 GTGATCACTAGCAAAAGAGCCC 59.320 50.000 18.83 0.00 34.23 5.19
293 294 2.349886 CGTGATCACTAGCAAAAGAGCC 59.650 50.000 22.95 0.00 34.23 4.70
294 295 3.254060 TCGTGATCACTAGCAAAAGAGC 58.746 45.455 22.95 0.00 0.00 4.09
295 296 4.325741 CACTCGTGATCACTAGCAAAAGAG 59.674 45.833 23.37 19.70 0.00 2.85
296 297 4.237724 CACTCGTGATCACTAGCAAAAGA 58.762 43.478 23.37 10.58 0.00 2.52
297 298 3.181526 GCACTCGTGATCACTAGCAAAAG 60.182 47.826 23.37 11.73 0.00 2.27
298 299 2.736721 GCACTCGTGATCACTAGCAAAA 59.263 45.455 23.37 1.76 0.00 2.44
299 300 2.288763 TGCACTCGTGATCACTAGCAAA 60.289 45.455 23.37 9.19 0.00 3.68
300 301 1.272212 TGCACTCGTGATCACTAGCAA 59.728 47.619 23.37 9.50 0.00 3.91
301 302 0.887933 TGCACTCGTGATCACTAGCA 59.112 50.000 23.37 21.58 0.00 3.49
302 303 2.215907 ATGCACTCGTGATCACTAGC 57.784 50.000 23.37 19.68 0.00 3.42
303 304 5.576774 TGTAAAATGCACTCGTGATCACTAG 59.423 40.000 22.20 22.20 0.00 2.57
304 305 5.474825 TGTAAAATGCACTCGTGATCACTA 58.525 37.500 22.95 11.99 0.00 2.74
305 306 4.314961 TGTAAAATGCACTCGTGATCACT 58.685 39.130 22.95 2.07 0.00 3.41
306 307 4.661993 TGTAAAATGCACTCGTGATCAC 57.338 40.909 16.21 16.21 0.00 3.06
307 308 5.008118 TGTTTGTAAAATGCACTCGTGATCA 59.992 36.000 0.39 0.00 0.00 2.92
308 309 5.339611 GTGTTTGTAAAATGCACTCGTGATC 59.660 40.000 0.39 0.00 0.00 2.92
309 310 5.212194 GTGTTTGTAAAATGCACTCGTGAT 58.788 37.500 0.39 0.00 0.00 3.06
310 311 4.593157 GTGTTTGTAAAATGCACTCGTGA 58.407 39.130 0.39 0.00 0.00 4.35
311 312 3.417321 CGTGTTTGTAAAATGCACTCGTG 59.583 43.478 0.00 0.00 0.00 4.35
312 313 3.613563 CGTGTTTGTAAAATGCACTCGT 58.386 40.909 0.00 0.00 0.00 4.18
313 314 2.400408 GCGTGTTTGTAAAATGCACTCG 59.600 45.455 0.00 0.00 0.00 4.18
314 315 2.724174 GGCGTGTTTGTAAAATGCACTC 59.276 45.455 0.00 0.00 0.00 3.51
315 316 2.360801 AGGCGTGTTTGTAAAATGCACT 59.639 40.909 0.00 0.00 0.00 4.40
316 317 2.738135 AGGCGTGTTTGTAAAATGCAC 58.262 42.857 0.00 0.00 0.00 4.57
317 318 3.815962 TCTAGGCGTGTTTGTAAAATGCA 59.184 39.130 0.00 0.00 0.00 3.96
318 319 4.413495 TCTAGGCGTGTTTGTAAAATGC 57.587 40.909 0.00 0.00 0.00 3.56
319 320 6.147164 TCTCTTCTAGGCGTGTTTGTAAAATG 59.853 38.462 0.00 0.00 0.00 2.32
320 321 6.228258 TCTCTTCTAGGCGTGTTTGTAAAAT 58.772 36.000 0.00 0.00 0.00 1.82
321 322 5.603596 TCTCTTCTAGGCGTGTTTGTAAAA 58.396 37.500 0.00 0.00 0.00 1.52
322 323 5.204409 TCTCTTCTAGGCGTGTTTGTAAA 57.796 39.130 0.00 0.00 0.00 2.01
323 324 4.859304 TCTCTTCTAGGCGTGTTTGTAA 57.141 40.909 0.00 0.00 0.00 2.41
324 325 5.401531 AATCTCTTCTAGGCGTGTTTGTA 57.598 39.130 0.00 0.00 0.00 2.41
325 326 3.963428 ATCTCTTCTAGGCGTGTTTGT 57.037 42.857 0.00 0.00 0.00 2.83
326 327 3.619038 GGAATCTCTTCTAGGCGTGTTTG 59.381 47.826 0.00 0.00 0.00 2.93
327 328 3.515901 AGGAATCTCTTCTAGGCGTGTTT 59.484 43.478 0.00 0.00 0.00 2.83
328 329 3.100671 AGGAATCTCTTCTAGGCGTGTT 58.899 45.455 0.00 0.00 0.00 3.32
329 330 2.741145 AGGAATCTCTTCTAGGCGTGT 58.259 47.619 0.00 0.00 0.00 4.49
330 331 3.491792 GGAAGGAATCTCTTCTAGGCGTG 60.492 52.174 9.98 0.00 41.94 5.34
331 332 2.696187 GGAAGGAATCTCTTCTAGGCGT 59.304 50.000 9.98 0.00 41.94 5.68
332 333 2.036604 GGGAAGGAATCTCTTCTAGGCG 59.963 54.545 9.98 0.00 41.94 5.52
333 334 2.036604 CGGGAAGGAATCTCTTCTAGGC 59.963 54.545 9.98 0.00 41.94 3.93
334 335 3.567397 TCGGGAAGGAATCTCTTCTAGG 58.433 50.000 9.98 3.01 41.94 3.02
335 336 4.465886 TCTCGGGAAGGAATCTCTTCTAG 58.534 47.826 9.98 0.00 41.94 2.43
336 337 4.521536 TCTCGGGAAGGAATCTCTTCTA 57.478 45.455 9.98 0.00 41.94 2.10
337 338 3.390175 TCTCGGGAAGGAATCTCTTCT 57.610 47.619 9.98 0.00 41.94 2.85
338 339 4.502431 GGAATCTCGGGAAGGAATCTCTTC 60.502 50.000 0.00 3.80 41.64 2.87
339 340 3.389656 GGAATCTCGGGAAGGAATCTCTT 59.610 47.826 0.00 0.00 0.00 2.85
340 341 2.969262 GGAATCTCGGGAAGGAATCTCT 59.031 50.000 0.00 0.00 0.00 3.10
341 342 2.969262 AGGAATCTCGGGAAGGAATCTC 59.031 50.000 0.00 0.00 0.00 2.75
342 343 3.053359 AGGAATCTCGGGAAGGAATCT 57.947 47.619 0.00 0.00 0.00 2.40
343 344 3.847671 AAGGAATCTCGGGAAGGAATC 57.152 47.619 0.00 0.00 0.00 2.52
348 349 1.480954 TCGGAAAGGAATCTCGGGAAG 59.519 52.381 0.00 0.00 0.00 3.46
392 397 0.192566 AGGTTGTACCACCCCTCAGA 59.807 55.000 12.38 0.00 41.95 3.27
410 415 3.680937 GGAGACCAGATATACGACTCGAG 59.319 52.174 11.84 11.84 0.00 4.04
751 774 4.697756 TGAGGCGCGAGGGTTTGG 62.698 66.667 12.10 0.00 0.00 3.28
899 934 5.695851 AAACAGTGGATGAGTAAAAGCTG 57.304 39.130 0.00 0.00 0.00 4.24
905 944 8.956426 GGAAATCAATAAACAGTGGATGAGTAA 58.044 33.333 0.00 0.00 0.00 2.24
940 979 1.743394 GCCAAGGTTAGTTCGGGATTG 59.257 52.381 0.00 0.00 0.00 2.67
1068 1107 1.544724 TTAATGCTTTCCAAGGCGCT 58.455 45.000 7.64 0.00 0.00 5.92
1084 1123 4.676444 CGTCTCGCCGTCGATTAA 57.324 55.556 0.00 0.00 44.56 1.40
1319 1370 1.659098 CTTGATACTGAAACGGCGGTC 59.341 52.381 13.24 9.01 0.00 4.79
1646 1733 5.372373 GCTGACCTTGATTATAAGCTCCTT 58.628 41.667 1.93 0.00 0.00 3.36
1656 1743 1.066430 GGTGGACGCTGACCTTGATTA 60.066 52.381 0.00 0.00 0.00 1.75
2564 2651 8.028354 CACAAATGTAAGATGTTTTGGCAGATA 58.972 33.333 0.00 0.00 34.23 1.98
3190 3281 2.766970 TCTGTTAAGTTGCGTTTGGC 57.233 45.000 0.00 0.00 43.96 4.52
3579 3682 9.840427 AACAAAACATAAGAGATTGGTAATTCG 57.160 29.630 0.00 0.00 0.00 3.34
3829 3932 6.261158 AGTTTTGACTTCTAAGGAGTCTTTGC 59.739 38.462 10.88 1.29 34.59 3.68
3916 4019 1.227380 CCCAGATGACGGCACTAGC 60.227 63.158 0.00 0.00 41.10 3.42
3929 4032 1.644509 ATGTCACTACACTGCCCAGA 58.355 50.000 1.69 0.00 38.78 3.86
4633 4736 8.322091 AGGCTCAGTTTCTACATTAACAGTATT 58.678 33.333 0.00 0.00 0.00 1.89
5464 5572 2.586648 TCTTTGAGCCCCTTTCTTCC 57.413 50.000 0.00 0.00 0.00 3.46
5732 5840 7.472334 AACATCACTAGGCTTGAAATGAAAT 57.528 32.000 16.69 5.48 0.00 2.17
6072 6180 3.558505 CCAACAGCAGATTCAAAACGAG 58.441 45.455 0.00 0.00 0.00 4.18
6269 6377 1.143838 CCATCCGTCCATCGAAGCA 59.856 57.895 0.00 0.00 42.86 3.91
6592 6754 4.380087 CGTCCATCTGAGATAAAACGATCG 59.620 45.833 14.88 14.88 0.00 3.69
6963 7125 1.209504 GTCTAGGTATGGGTGCAGCAA 59.790 52.381 19.06 6.89 0.00 3.91
6965 7127 0.830648 TGTCTAGGTATGGGTGCAGC 59.169 55.000 7.55 7.55 0.00 5.25
7127 7289 3.679389 CAGAGAAGCTTGGTGGTATTGT 58.321 45.455 2.10 0.00 0.00 2.71
7473 7635 3.944015 GGCAGATCAAGTAGCTTTGACAT 59.056 43.478 2.97 0.00 39.68 3.06
7500 7662 8.514594 CAGCTTATTGTCTTCCATGTAGAAAAA 58.485 33.333 2.76 0.19 0.00 1.94
7501 7663 7.121168 CCAGCTTATTGTCTTCCATGTAGAAAA 59.879 37.037 0.00 0.00 0.00 2.29
7590 7752 7.047891 CCTGTACCTGAGCTAATTCAACAATA 58.952 38.462 0.00 0.00 0.00 1.90
7600 7762 3.844211 ACATTTCCCTGTACCTGAGCTAA 59.156 43.478 0.00 0.00 0.00 3.09
7619 7781 2.699954 GCAGGTAGCACAAGTACACAT 58.300 47.619 0.00 0.00 44.79 3.21
7676 7838 9.823647 ACAGTATACAGAACAAGATTTATGGAG 57.176 33.333 5.50 0.00 0.00 3.86
7706 7868 2.156343 ACTCTTTCTCGTTGCCAGTC 57.844 50.000 0.00 0.00 0.00 3.51
7707 7869 3.321111 TCTTACTCTTTCTCGTTGCCAGT 59.679 43.478 0.00 0.00 0.00 4.00
7708 7870 3.914312 TCTTACTCTTTCTCGTTGCCAG 58.086 45.455 0.00 0.00 0.00 4.85
7710 7872 3.915536 ACTCTTACTCTTTCTCGTTGCC 58.084 45.455 0.00 0.00 0.00 4.52
7711 7873 4.982916 TGAACTCTTACTCTTTCTCGTTGC 59.017 41.667 0.00 0.00 0.00 4.17
7712 7874 5.117897 GCTGAACTCTTACTCTTTCTCGTTG 59.882 44.000 0.00 0.00 0.00 4.10
7714 7876 4.614078 CGCTGAACTCTTACTCTTTCTCGT 60.614 45.833 0.00 0.00 0.00 4.18
7715 7877 3.849145 CGCTGAACTCTTACTCTTTCTCG 59.151 47.826 0.00 0.00 0.00 4.04
7719 7898 6.018669 CAGAAAACGCTGAACTCTTACTCTTT 60.019 38.462 0.00 0.00 38.14 2.52
7745 7924 6.376018 AGAACTTAGAAGGTACAGCTACTCAG 59.624 42.308 0.00 0.00 0.00 3.35
7803 7988 4.202212 ACCCAACATTTTTCCTTGTAGCAC 60.202 41.667 0.00 0.00 0.00 4.40
7806 7991 5.163457 ACACACCCAACATTTTTCCTTGTAG 60.163 40.000 0.00 0.00 0.00 2.74
7812 7997 4.119136 CAGAACACACCCAACATTTTTCC 58.881 43.478 0.00 0.00 0.00 3.13
7818 8003 1.032014 GCACAGAACACACCCAACAT 58.968 50.000 0.00 0.00 0.00 2.71
7819 8004 1.034838 GGCACAGAACACACCCAACA 61.035 55.000 0.00 0.00 0.00 3.33
8072 8266 3.004106 GGAACATGAGTGCAGCATAATCC 59.996 47.826 0.00 12.85 0.00 3.01
8101 8295 1.072332 CCGACCAACATGGGTGTGA 59.928 57.895 0.00 0.00 43.37 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.