Multiple sequence alignment - TraesCS3D01G100800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G100800 chr3D 100.000 5286 0 0 1 5286 53462134 53467419 0.000000e+00 9762
1 TraesCS3D01G100800 chr3D 97.041 169 5 0 2688 2856 379483466 379483298 8.660000e-73 285
2 TraesCS3D01G100800 chr3D 97.576 165 4 0 2687 2851 302228235 302228071 3.120000e-72 283
3 TraesCS3D01G100800 chr3A 94.364 2360 107 18 347 2687 64778457 64780809 0.000000e+00 3598
4 TraesCS3D01G100800 chr3A 95.739 1596 55 11 2851 4438 64780811 64782401 0.000000e+00 2558
5 TraesCS3D01G100800 chr3A 93.000 200 11 3 5090 5286 64782925 64783124 6.700000e-74 289
6 TraesCS3D01G100800 chr3A 88.584 219 11 7 4480 4685 64782453 64782670 2.440000e-63 254
7 TraesCS3D01G100800 chr3A 97.468 79 1 1 4438 4516 64782376 64782453 3.320000e-27 134
8 TraesCS3D01G100800 chr3B 92.788 2468 113 19 2850 5286 83883681 83886114 0.000000e+00 3511
9 TraesCS3D01G100800 chr3B 93.747 2159 124 7 539 2689 83881527 83883682 0.000000e+00 3229
10 TraesCS3D01G100800 chr3B 84.180 689 70 18 1120 1798 82453070 82452411 2.690000e-177 632
11 TraesCS3D01G100800 chr3B 83.167 600 71 12 1792 2389 82447174 82446603 6.070000e-144 521
12 TraesCS3D01G100800 chr3B 97.531 81 2 0 7 87 83843580 83843660 7.140000e-29 139
13 TraesCS3D01G100800 chr2D 98.830 171 2 0 2682 2852 351055240 351055410 6.650000e-79 305
14 TraesCS3D01G100800 chr2D 98.214 168 3 0 2688 2855 78903197 78903364 1.440000e-75 294
15 TraesCS3D01G100800 chr2D 97.590 166 4 0 2686 2851 587279416 587279251 8.660000e-73 285
16 TraesCS3D01G100800 chr1D 98.780 164 2 0 2688 2851 396035330 396035493 5.180000e-75 292
17 TraesCS3D01G100800 chr1D 85.475 179 15 5 4516 4685 421882427 421882251 5.440000e-40 176
18 TraesCS3D01G100800 chr7B 97.633 169 4 0 2688 2856 664801022 664800854 1.860000e-74 291
19 TraesCS3D01G100800 chr4D 97.605 167 4 0 2685 2851 293550124 293550290 2.410000e-73 287
20 TraesCS3D01G100800 chrUn 97.590 166 3 1 2687 2852 99637990 99638154 3.120000e-72 283
21 TraesCS3D01G100800 chr1B 86.592 179 13 5 4516 4685 570842207 570842031 2.510000e-43 187
22 TraesCS3D01G100800 chr6A 89.655 145 15 0 207 351 380160061 380160205 9.040000e-43 185
23 TraesCS3D01G100800 chr4A 88.667 150 15 2 207 356 284949735 284949882 1.170000e-41 182
24 TraesCS3D01G100800 chr1A 85.475 179 15 6 4516 4685 517896090 517895914 5.440000e-40 176
25 TraesCS3D01G100800 chr7D 88.194 144 16 1 207 350 199822998 199822856 2.530000e-38 171
26 TraesCS3D01G100800 chr2A 96.610 59 2 0 289 347 760912699 760912757 1.210000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G100800 chr3D 53462134 53467419 5285 False 9762.0 9762 100.0000 1 5286 1 chr3D.!!$F1 5285
1 TraesCS3D01G100800 chr3A 64778457 64783124 4667 False 1366.6 3598 93.8310 347 5286 5 chr3A.!!$F1 4939
2 TraesCS3D01G100800 chr3B 83881527 83886114 4587 False 3370.0 3511 93.2675 539 5286 2 chr3B.!!$F2 4747
3 TraesCS3D01G100800 chr3B 82452411 82453070 659 True 632.0 632 84.1800 1120 1798 1 chr3B.!!$R2 678
4 TraesCS3D01G100800 chr3B 82446603 82447174 571 True 521.0 521 83.1670 1792 2389 1 chr3B.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 170 0.032952 TAAGGCCGCGCTTGGTATAG 59.967 55.0 5.56 0.0 0.00 1.31 F
421 422 0.036875 CACCTGGTTCTGGGAAGGTC 59.963 60.0 0.00 0.0 41.14 3.85 F
1936 1965 0.539051 AAGACAGAGGCGAAGGATGG 59.461 55.0 0.00 0.0 0.00 3.51 F
2699 2732 0.412640 ACCCTTCTACTCCCTCCGTT 59.587 55.0 0.00 0.0 0.00 4.44 F
3959 4008 0.616111 GCCAGTCCCAGAGAAGAGGA 60.616 60.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 1906 0.323725 TCCTCAATCCTGCTTTGGCC 60.324 55.000 0.0 0.0 37.74 5.36 R
2297 2326 0.606096 TGCATTCGAGGAAGACCGAA 59.394 50.000 0.0 0.0 46.72 4.30 R
2907 2941 1.123077 TGGGATCTTGAGGTGGATCG 58.877 55.000 0.0 0.0 39.19 3.69 R
4170 4219 0.323816 CCTCTCTTTCCCTTTGCCCC 60.324 60.000 0.0 0.0 0.00 5.80 R
5041 5146 1.200020 CCTGTCGGCATTTCCAACTTC 59.800 52.381 0.0 0.0 34.01 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.784547 CAATGATTGGCTCGGCTCA 58.215 52.632 0.00 0.00 0.00 4.26
19 20 1.315690 CAATGATTGGCTCGGCTCAT 58.684 50.000 0.00 0.00 0.00 2.90
20 21 1.679680 CAATGATTGGCTCGGCTCATT 59.320 47.619 0.00 3.23 38.52 2.57
21 22 1.315690 ATGATTGGCTCGGCTCATTG 58.684 50.000 0.00 0.00 0.00 2.82
22 23 1.358046 GATTGGCTCGGCTCATTGC 59.642 57.895 0.00 0.00 41.94 3.56
32 33 3.025866 GCTCATTGCCAAAAGAGCG 57.974 52.632 16.19 0.00 44.48 5.03
33 34 0.242017 GCTCATTGCCAAAAGAGCGT 59.758 50.000 16.19 0.00 44.48 5.07
34 35 1.973138 CTCATTGCCAAAAGAGCGTG 58.027 50.000 0.00 0.00 0.00 5.34
35 36 1.536766 CTCATTGCCAAAAGAGCGTGA 59.463 47.619 0.00 0.00 0.00 4.35
36 37 1.536766 TCATTGCCAAAAGAGCGTGAG 59.463 47.619 0.00 0.00 0.00 3.51
37 38 0.883833 ATTGCCAAAAGAGCGTGAGG 59.116 50.000 0.00 0.00 0.00 3.86
39 40 1.165907 TGCCAAAAGAGCGTGAGGTG 61.166 55.000 0.00 0.00 45.11 4.00
40 41 0.884704 GCCAAAAGAGCGTGAGGTGA 60.885 55.000 0.00 0.00 45.11 4.02
41 42 1.593196 CCAAAAGAGCGTGAGGTGAA 58.407 50.000 0.00 0.00 45.11 3.18
42 43 1.532868 CCAAAAGAGCGTGAGGTGAAG 59.467 52.381 0.00 0.00 45.11 3.02
43 44 1.069636 CAAAAGAGCGTGAGGTGAAGC 60.070 52.381 0.00 0.00 45.11 3.86
44 45 0.946221 AAAGAGCGTGAGGTGAAGCG 60.946 55.000 0.00 0.00 45.11 4.68
45 46 1.806461 AAGAGCGTGAGGTGAAGCGA 61.806 55.000 0.00 0.00 45.11 4.93
46 47 1.803519 GAGCGTGAGGTGAAGCGAG 60.804 63.158 0.00 0.00 45.11 5.03
47 48 3.482783 GCGTGAGGTGAAGCGAGC 61.483 66.667 0.00 0.00 0.00 5.03
48 49 2.811317 CGTGAGGTGAAGCGAGCC 60.811 66.667 0.00 0.00 0.00 4.70
49 50 2.811317 GTGAGGTGAAGCGAGCCG 60.811 66.667 0.00 0.00 0.00 5.52
50 51 2.989253 TGAGGTGAAGCGAGCCGA 60.989 61.111 0.00 0.00 0.00 5.54
51 52 2.261671 GAGGTGAAGCGAGCCGAA 59.738 61.111 0.00 0.00 0.00 4.30
52 53 2.048127 AGGTGAAGCGAGCCGAAC 60.048 61.111 0.00 0.00 0.00 3.95
53 54 2.357034 GGTGAAGCGAGCCGAACA 60.357 61.111 0.00 0.00 0.00 3.18
54 55 1.959226 GGTGAAGCGAGCCGAACAA 60.959 57.895 0.00 0.00 0.00 2.83
55 56 1.503818 GGTGAAGCGAGCCGAACAAA 61.504 55.000 0.00 0.00 0.00 2.83
56 57 0.384353 GTGAAGCGAGCCGAACAAAC 60.384 55.000 0.00 0.00 0.00 2.93
57 58 1.154654 GAAGCGAGCCGAACAAACG 60.155 57.895 0.00 0.00 0.00 3.60
58 59 1.554042 GAAGCGAGCCGAACAAACGA 61.554 55.000 0.00 0.00 35.09 3.85
59 60 1.557443 AAGCGAGCCGAACAAACGAG 61.557 55.000 0.00 0.00 35.09 4.18
60 61 2.470286 CGAGCCGAACAAACGAGC 59.530 61.111 0.00 0.00 35.09 5.03
61 62 2.307309 CGAGCCGAACAAACGAGCA 61.307 57.895 0.00 0.00 34.07 4.26
62 63 1.827315 CGAGCCGAACAAACGAGCAA 61.827 55.000 0.00 0.00 34.07 3.91
63 64 0.110644 GAGCCGAACAAACGAGCAAG 60.111 55.000 0.00 0.00 34.07 4.01
64 65 1.725973 GCCGAACAAACGAGCAAGC 60.726 57.895 0.00 0.00 35.09 4.01
65 66 1.438710 CCGAACAAACGAGCAAGCG 60.439 57.895 0.00 0.00 35.09 4.68
83 84 3.702330 AGCGTTAAAGCTTTTTGTCCAC 58.298 40.909 18.47 4.44 46.80 4.02
84 85 2.792674 GCGTTAAAGCTTTTTGTCCACC 59.207 45.455 18.47 0.00 0.00 4.61
85 86 3.490249 GCGTTAAAGCTTTTTGTCCACCT 60.490 43.478 18.47 0.00 0.00 4.00
86 87 4.287720 CGTTAAAGCTTTTTGTCCACCTC 58.712 43.478 18.47 0.00 0.00 3.85
87 88 4.201970 CGTTAAAGCTTTTTGTCCACCTCA 60.202 41.667 18.47 0.00 0.00 3.86
88 89 3.801114 AAAGCTTTTTGTCCACCTCAC 57.199 42.857 5.69 0.00 0.00 3.51
89 90 1.308998 AGCTTTTTGTCCACCTCACG 58.691 50.000 0.00 0.00 0.00 4.35
90 91 0.317854 GCTTTTTGTCCACCTCACGC 60.318 55.000 0.00 0.00 0.00 5.34
91 92 1.308998 CTTTTTGTCCACCTCACGCT 58.691 50.000 0.00 0.00 0.00 5.07
92 93 1.264288 CTTTTTGTCCACCTCACGCTC 59.736 52.381 0.00 0.00 0.00 5.03
93 94 0.878523 TTTTGTCCACCTCACGCTCG 60.879 55.000 0.00 0.00 0.00 5.03
94 95 2.023414 TTTGTCCACCTCACGCTCGT 62.023 55.000 0.00 0.00 0.00 4.18
95 96 2.023414 TTGTCCACCTCACGCTCGTT 62.023 55.000 0.00 0.00 0.00 3.85
96 97 1.300697 GTCCACCTCACGCTCGTTT 60.301 57.895 0.00 0.00 0.00 3.60
97 98 1.300620 TCCACCTCACGCTCGTTTG 60.301 57.895 0.00 0.00 0.00 2.93
98 99 2.317609 CCACCTCACGCTCGTTTGG 61.318 63.158 8.31 8.31 0.00 3.28
99 100 2.030562 ACCTCACGCTCGTTTGGG 59.969 61.111 12.69 8.62 0.00 4.12
100 101 2.342279 CCTCACGCTCGTTTGGGA 59.658 61.111 0.00 0.00 0.00 4.37
101 102 1.079127 CCTCACGCTCGTTTGGGAT 60.079 57.895 0.00 0.00 0.00 3.85
102 103 1.361668 CCTCACGCTCGTTTGGGATG 61.362 60.000 0.00 0.00 0.00 3.51
103 104 1.970917 CTCACGCTCGTTTGGGATGC 61.971 60.000 0.00 0.00 0.00 3.91
104 105 2.031919 ACGCTCGTTTGGGATGCA 59.968 55.556 0.00 0.00 0.00 3.96
105 106 1.377202 ACGCTCGTTTGGGATGCAT 60.377 52.632 0.00 0.00 0.00 3.96
106 107 1.353103 CGCTCGTTTGGGATGCATC 59.647 57.895 18.81 18.81 0.00 3.91
107 108 1.729881 GCTCGTTTGGGATGCATCC 59.270 57.895 33.90 33.90 46.41 3.51
117 118 3.995526 GATGCATCCATCGGTCTCA 57.004 52.632 16.23 0.00 38.59 3.27
118 119 1.506493 GATGCATCCATCGGTCTCAC 58.494 55.000 16.23 0.00 38.59 3.51
119 120 0.107456 ATGCATCCATCGGTCTCACC 59.893 55.000 0.00 0.00 34.05 4.02
120 121 0.977627 TGCATCCATCGGTCTCACCT 60.978 55.000 0.00 0.00 35.66 4.00
121 122 0.531532 GCATCCATCGGTCTCACCTG 60.532 60.000 0.00 0.00 35.66 4.00
122 123 0.826715 CATCCATCGGTCTCACCTGT 59.173 55.000 0.00 0.00 35.66 4.00
123 124 2.031870 CATCCATCGGTCTCACCTGTA 58.968 52.381 0.00 0.00 35.66 2.74
124 125 1.763968 TCCATCGGTCTCACCTGTAG 58.236 55.000 0.00 0.00 35.66 2.74
125 126 0.747255 CCATCGGTCTCACCTGTAGG 59.253 60.000 0.00 0.00 35.66 3.18
126 127 0.747255 CATCGGTCTCACCTGTAGGG 59.253 60.000 2.53 0.00 40.27 3.53
127 128 0.629596 ATCGGTCTCACCTGTAGGGA 59.370 55.000 2.53 0.00 40.27 4.20
128 129 0.629596 TCGGTCTCACCTGTAGGGAT 59.370 55.000 2.53 0.00 40.27 3.85
129 130 1.033574 CGGTCTCACCTGTAGGGATC 58.966 60.000 2.53 0.00 40.27 3.36
130 131 1.033574 GGTCTCACCTGTAGGGATCG 58.966 60.000 2.53 0.00 40.27 3.69
131 132 1.409802 GGTCTCACCTGTAGGGATCGA 60.410 57.143 2.53 0.00 40.27 3.59
132 133 1.677052 GTCTCACCTGTAGGGATCGAC 59.323 57.143 2.53 0.46 40.27 4.20
133 134 0.663688 CTCACCTGTAGGGATCGACG 59.336 60.000 2.53 0.00 40.27 5.12
134 135 0.253894 TCACCTGTAGGGATCGACGA 59.746 55.000 0.00 0.00 40.27 4.20
135 136 1.100510 CACCTGTAGGGATCGACGAA 58.899 55.000 0.00 0.00 40.27 3.85
136 137 1.065701 CACCTGTAGGGATCGACGAAG 59.934 57.143 0.00 0.00 40.27 3.79
137 138 1.340795 ACCTGTAGGGATCGACGAAGT 60.341 52.381 0.00 0.00 42.49 3.01
138 139 1.065701 CCTGTAGGGATCGACGAAGTG 59.934 57.143 0.00 0.00 38.16 3.16
139 140 3.521943 CCTGTAGGGATCGACGAAGTGT 61.522 54.545 0.00 0.00 38.16 3.55
140 141 5.571640 CCTGTAGGGATCGACGAAGTGTG 62.572 56.522 0.00 0.00 38.16 3.82
148 149 2.821685 ACGAAGTGTGCTGGCTGA 59.178 55.556 0.00 0.00 42.51 4.26
149 150 1.146041 ACGAAGTGTGCTGGCTGAA 59.854 52.632 0.00 0.00 42.51 3.02
150 151 0.250467 ACGAAGTGTGCTGGCTGAAT 60.250 50.000 0.00 0.00 42.51 2.57
151 152 1.001974 ACGAAGTGTGCTGGCTGAATA 59.998 47.619 0.00 0.00 42.51 1.75
152 153 2.076100 CGAAGTGTGCTGGCTGAATAA 58.924 47.619 0.00 0.00 0.00 1.40
153 154 2.094894 CGAAGTGTGCTGGCTGAATAAG 59.905 50.000 0.00 0.00 0.00 1.73
154 155 2.119801 AGTGTGCTGGCTGAATAAGG 57.880 50.000 0.00 0.00 0.00 2.69
160 161 3.953887 GGCTGAATAAGGCCGCGC 61.954 66.667 0.00 0.00 45.73 6.86
161 162 2.897350 GCTGAATAAGGCCGCGCT 60.897 61.111 5.56 0.00 0.00 5.92
162 163 2.472909 GCTGAATAAGGCCGCGCTT 61.473 57.895 5.56 1.72 0.00 4.68
163 164 1.353103 CTGAATAAGGCCGCGCTTG 59.647 57.895 5.56 0.00 0.00 4.01
164 165 2.051804 CTGAATAAGGCCGCGCTTGG 62.052 60.000 5.56 0.18 0.00 3.61
165 166 2.045340 AATAAGGCCGCGCTTGGT 60.045 55.556 5.56 0.00 0.00 3.67
166 167 0.812412 GAATAAGGCCGCGCTTGGTA 60.812 55.000 5.56 0.00 0.00 3.25
167 168 0.179029 AATAAGGCCGCGCTTGGTAT 60.179 50.000 5.56 0.00 0.00 2.73
168 169 0.682852 ATAAGGCCGCGCTTGGTATA 59.317 50.000 5.56 0.00 0.00 1.47
169 170 0.032952 TAAGGCCGCGCTTGGTATAG 59.967 55.000 5.56 0.00 0.00 1.31
170 171 1.968050 AAGGCCGCGCTTGGTATAGT 61.968 55.000 5.56 0.00 0.00 2.12
171 172 1.523032 GGCCGCGCTTGGTATAGTT 60.523 57.895 5.56 0.00 0.00 2.24
172 173 1.641677 GCCGCGCTTGGTATAGTTG 59.358 57.895 5.56 0.00 0.00 3.16
173 174 1.087771 GCCGCGCTTGGTATAGTTGT 61.088 55.000 5.56 0.00 0.00 3.32
174 175 1.803625 GCCGCGCTTGGTATAGTTGTA 60.804 52.381 5.56 0.00 0.00 2.41
175 176 2.542597 CCGCGCTTGGTATAGTTGTAA 58.457 47.619 5.56 0.00 0.00 2.41
176 177 3.128349 CCGCGCTTGGTATAGTTGTAAT 58.872 45.455 5.56 0.00 0.00 1.89
177 178 4.300803 CCGCGCTTGGTATAGTTGTAATA 58.699 43.478 5.56 0.00 0.00 0.98
178 179 4.746115 CCGCGCTTGGTATAGTTGTAATAA 59.254 41.667 5.56 0.00 0.00 1.40
179 180 5.107607 CCGCGCTTGGTATAGTTGTAATAAG 60.108 44.000 5.56 0.00 0.00 1.73
180 181 5.461078 CGCGCTTGGTATAGTTGTAATAAGT 59.539 40.000 5.56 0.00 0.00 2.24
181 182 6.019318 CGCGCTTGGTATAGTTGTAATAAGTT 60.019 38.462 5.56 0.00 0.00 2.66
182 183 7.464977 CGCGCTTGGTATAGTTGTAATAAGTTT 60.465 37.037 5.56 0.00 0.00 2.66
183 184 8.179615 GCGCTTGGTATAGTTGTAATAAGTTTT 58.820 33.333 0.00 0.00 0.00 2.43
203 204 2.296073 TTTTTGCGGGGGATAGTTGT 57.704 45.000 0.00 0.00 0.00 3.32
204 205 3.436577 TTTTTGCGGGGGATAGTTGTA 57.563 42.857 0.00 0.00 0.00 2.41
205 206 3.436577 TTTTGCGGGGGATAGTTGTAA 57.563 42.857 0.00 0.00 0.00 2.41
206 207 3.655615 TTTGCGGGGGATAGTTGTAAT 57.344 42.857 0.00 0.00 0.00 1.89
207 208 4.774660 TTTGCGGGGGATAGTTGTAATA 57.225 40.909 0.00 0.00 0.00 0.98
208 209 4.774660 TTGCGGGGGATAGTTGTAATAA 57.225 40.909 0.00 0.00 0.00 1.40
209 210 4.345859 TGCGGGGGATAGTTGTAATAAG 57.654 45.455 0.00 0.00 0.00 1.73
210 211 3.712733 TGCGGGGGATAGTTGTAATAAGT 59.287 43.478 0.00 0.00 0.00 2.24
211 212 4.164604 TGCGGGGGATAGTTGTAATAAGTT 59.835 41.667 0.00 0.00 0.00 2.66
212 213 5.366186 TGCGGGGGATAGTTGTAATAAGTTA 59.634 40.000 0.00 0.00 0.00 2.24
213 214 6.126825 TGCGGGGGATAGTTGTAATAAGTTAA 60.127 38.462 0.00 0.00 0.00 2.01
214 215 6.938596 GCGGGGGATAGTTGTAATAAGTTAAT 59.061 38.462 0.00 0.00 0.00 1.40
215 216 8.096414 GCGGGGGATAGTTGTAATAAGTTAATA 58.904 37.037 0.00 0.00 0.00 0.98
216 217 9.428097 CGGGGGATAGTTGTAATAAGTTAATAC 57.572 37.037 1.73 1.73 0.00 1.89
238 239 8.973835 ATACACGTGTATTAAATTTTTGGGTG 57.026 30.769 30.78 0.00 37.97 4.61
239 240 6.807789 ACACGTGTATTAAATTTTTGGGTGT 58.192 32.000 21.98 0.20 0.00 4.16
240 241 7.938715 ACACGTGTATTAAATTTTTGGGTGTA 58.061 30.769 21.98 0.00 32.58 2.90
241 242 8.411683 ACACGTGTATTAAATTTTTGGGTGTAA 58.588 29.630 21.98 0.00 32.58 2.41
242 243 9.413048 CACGTGTATTAAATTTTTGGGTGTAAT 57.587 29.630 7.58 0.00 0.00 1.89
243 244 9.984190 ACGTGTATTAAATTTTTGGGTGTAATT 57.016 25.926 0.00 0.00 0.00 1.40
249 250 8.828688 TTAAATTTTTGGGTGTAATTTACCGG 57.171 30.769 0.00 0.00 39.14 5.28
250 251 3.938289 TTTTGGGTGTAATTTACCGGC 57.062 42.857 0.00 0.00 39.14 6.13
251 252 1.836802 TTGGGTGTAATTTACCGGCC 58.163 50.000 0.00 0.00 39.14 6.13
252 253 0.697079 TGGGTGTAATTTACCGGCCA 59.303 50.000 0.00 0.00 39.14 5.36
253 254 1.075050 TGGGTGTAATTTACCGGCCAA 59.925 47.619 0.00 0.00 39.14 4.52
254 255 1.746787 GGGTGTAATTTACCGGCCAAG 59.253 52.381 0.00 0.00 39.14 3.61
255 256 2.618559 GGGTGTAATTTACCGGCCAAGA 60.619 50.000 0.00 0.00 39.14 3.02
256 257 2.681344 GGTGTAATTTACCGGCCAAGAG 59.319 50.000 0.00 0.00 0.00 2.85
257 258 3.340928 GTGTAATTTACCGGCCAAGAGT 58.659 45.455 0.00 0.00 0.00 3.24
258 259 3.754850 GTGTAATTTACCGGCCAAGAGTT 59.245 43.478 0.00 0.00 0.00 3.01
259 260 4.937015 GTGTAATTTACCGGCCAAGAGTTA 59.063 41.667 0.00 0.00 0.00 2.24
260 261 5.064325 GTGTAATTTACCGGCCAAGAGTTAG 59.936 44.000 0.00 0.00 0.00 2.34
261 262 3.994931 ATTTACCGGCCAAGAGTTAGT 57.005 42.857 0.00 0.00 0.00 2.24
262 263 3.775261 TTTACCGGCCAAGAGTTAGTT 57.225 42.857 0.00 0.00 0.00 2.24
263 264 3.775261 TTACCGGCCAAGAGTTAGTTT 57.225 42.857 0.00 0.00 0.00 2.66
264 265 2.651382 ACCGGCCAAGAGTTAGTTTT 57.349 45.000 0.00 0.00 0.00 2.43
265 266 2.227194 ACCGGCCAAGAGTTAGTTTTG 58.773 47.619 0.00 0.00 0.00 2.44
266 267 1.539827 CCGGCCAAGAGTTAGTTTTGG 59.460 52.381 2.24 5.12 43.31 3.28
273 274 6.877611 CCAAGAGTTAGTTTTGGCTAGAAA 57.122 37.500 0.00 0.00 35.41 2.52
274 275 6.903419 CCAAGAGTTAGTTTTGGCTAGAAAG 58.097 40.000 0.00 0.00 35.41 2.62
288 289 2.969443 AGAAAGCAAAACGACGGATG 57.031 45.000 0.00 0.00 0.00 3.51
289 290 1.535462 AGAAAGCAAAACGACGGATGG 59.465 47.619 0.00 0.00 0.00 3.51
290 291 1.533731 GAAAGCAAAACGACGGATGGA 59.466 47.619 0.00 0.00 0.00 3.41
291 292 1.156736 AAGCAAAACGACGGATGGAG 58.843 50.000 0.00 0.00 0.00 3.86
292 293 0.320374 AGCAAAACGACGGATGGAGA 59.680 50.000 0.00 0.00 0.00 3.71
293 294 1.066143 AGCAAAACGACGGATGGAGAT 60.066 47.619 0.00 0.00 0.00 2.75
294 295 1.327764 GCAAAACGACGGATGGAGATC 59.672 52.381 0.00 0.00 0.00 2.75
295 296 2.893637 CAAAACGACGGATGGAGATCT 58.106 47.619 0.00 0.00 0.00 2.75
296 297 2.586258 AAACGACGGATGGAGATCTG 57.414 50.000 0.00 0.00 40.43 2.90
298 299 2.343484 ACGACGGATGGAGATCTGTA 57.657 50.000 0.00 0.00 46.50 2.74
299 300 2.651455 ACGACGGATGGAGATCTGTAA 58.349 47.619 0.00 0.00 46.50 2.41
300 301 3.223435 ACGACGGATGGAGATCTGTAAT 58.777 45.455 0.00 0.00 46.50 1.89
301 302 3.637229 ACGACGGATGGAGATCTGTAATT 59.363 43.478 0.00 0.00 46.50 1.40
302 303 4.099573 ACGACGGATGGAGATCTGTAATTT 59.900 41.667 0.00 0.00 46.50 1.82
303 304 5.050490 CGACGGATGGAGATCTGTAATTTT 58.950 41.667 0.00 0.00 46.50 1.82
304 305 5.523916 CGACGGATGGAGATCTGTAATTTTT 59.476 40.000 0.00 0.00 46.50 1.94
305 306 6.700081 CGACGGATGGAGATCTGTAATTTTTA 59.300 38.462 0.00 0.00 46.50 1.52
306 307 7.306632 CGACGGATGGAGATCTGTAATTTTTAC 60.307 40.741 0.00 0.00 46.50 2.01
307 308 6.479001 ACGGATGGAGATCTGTAATTTTTACG 59.521 38.462 0.00 0.00 44.98 3.18
308 309 6.073765 CGGATGGAGATCTGTAATTTTTACGG 60.074 42.308 0.00 0.70 31.08 4.02
309 310 6.204882 GGATGGAGATCTGTAATTTTTACGGG 59.795 42.308 0.00 0.00 0.00 5.28
310 311 6.057321 TGGAGATCTGTAATTTTTACGGGT 57.943 37.500 0.00 0.00 0.00 5.28
311 312 5.878116 TGGAGATCTGTAATTTTTACGGGTG 59.122 40.000 0.00 0.00 0.00 4.61
312 313 5.878669 GGAGATCTGTAATTTTTACGGGTGT 59.121 40.000 0.00 0.00 0.00 4.16
313 314 7.043565 GGAGATCTGTAATTTTTACGGGTGTA 58.956 38.462 0.00 0.00 0.00 2.90
314 315 7.550196 GGAGATCTGTAATTTTTACGGGTGTAA 59.450 37.037 0.00 0.00 38.77 2.41
315 316 8.488651 AGATCTGTAATTTTTACGGGTGTAAG 57.511 34.615 0.00 0.00 41.37 2.34
316 317 8.098912 AGATCTGTAATTTTTACGGGTGTAAGT 58.901 33.333 0.00 0.00 41.37 2.24
317 318 7.424227 TCTGTAATTTTTACGGGTGTAAGTG 57.576 36.000 6.43 0.00 41.37 3.16
318 319 6.427547 TCTGTAATTTTTACGGGTGTAAGTGG 59.572 38.462 6.43 0.00 41.37 4.00
319 320 6.294473 TGTAATTTTTACGGGTGTAAGTGGA 58.706 36.000 0.00 0.00 41.37 4.02
320 321 6.769822 TGTAATTTTTACGGGTGTAAGTGGAA 59.230 34.615 0.00 0.00 41.37 3.53
321 322 5.952526 ATTTTTACGGGTGTAAGTGGAAG 57.047 39.130 0.00 0.00 41.37 3.46
322 323 3.405823 TTTACGGGTGTAAGTGGAAGG 57.594 47.619 0.00 0.00 41.37 3.46
323 324 2.307496 TACGGGTGTAAGTGGAAGGA 57.693 50.000 0.00 0.00 0.00 3.36
324 325 1.426751 ACGGGTGTAAGTGGAAGGAA 58.573 50.000 0.00 0.00 0.00 3.36
325 326 1.770061 ACGGGTGTAAGTGGAAGGAAA 59.230 47.619 0.00 0.00 0.00 3.13
326 327 2.173143 ACGGGTGTAAGTGGAAGGAAAA 59.827 45.455 0.00 0.00 0.00 2.29
327 328 2.551032 CGGGTGTAAGTGGAAGGAAAAC 59.449 50.000 0.00 0.00 0.00 2.43
328 329 2.551032 GGGTGTAAGTGGAAGGAAAACG 59.449 50.000 0.00 0.00 0.00 3.60
329 330 3.469739 GGTGTAAGTGGAAGGAAAACGA 58.530 45.455 0.00 0.00 0.00 3.85
330 331 3.878699 GGTGTAAGTGGAAGGAAAACGAA 59.121 43.478 0.00 0.00 0.00 3.85
331 332 4.024302 GGTGTAAGTGGAAGGAAAACGAAG 60.024 45.833 0.00 0.00 0.00 3.79
332 333 4.812626 GTGTAAGTGGAAGGAAAACGAAGA 59.187 41.667 0.00 0.00 0.00 2.87
333 334 5.469084 GTGTAAGTGGAAGGAAAACGAAGAT 59.531 40.000 0.00 0.00 0.00 2.40
334 335 5.699458 TGTAAGTGGAAGGAAAACGAAGATC 59.301 40.000 0.00 0.00 0.00 2.75
335 336 3.676093 AGTGGAAGGAAAACGAAGATCC 58.324 45.455 0.00 0.00 0.00 3.36
336 337 3.072476 AGTGGAAGGAAAACGAAGATCCA 59.928 43.478 0.00 0.00 35.62 3.41
337 338 3.818773 GTGGAAGGAAAACGAAGATCCAA 59.181 43.478 0.00 0.00 37.24 3.53
338 339 4.072131 TGGAAGGAAAACGAAGATCCAAG 58.928 43.478 0.00 0.00 35.62 3.61
339 340 3.119814 GGAAGGAAAACGAAGATCCAAGC 60.120 47.826 0.00 0.00 35.62 4.01
340 341 3.140325 AGGAAAACGAAGATCCAAGCA 57.860 42.857 0.00 0.00 35.62 3.91
341 342 3.077359 AGGAAAACGAAGATCCAAGCAG 58.923 45.455 0.00 0.00 35.62 4.24
342 343 2.162408 GGAAAACGAAGATCCAAGCAGG 59.838 50.000 0.00 0.00 39.47 4.85
343 344 1.826385 AAACGAAGATCCAAGCAGGG 58.174 50.000 0.00 0.00 38.24 4.45
344 345 0.678048 AACGAAGATCCAAGCAGGGC 60.678 55.000 0.00 0.00 38.24 5.19
345 346 1.821332 CGAAGATCCAAGCAGGGCC 60.821 63.158 0.00 0.00 38.24 5.80
368 369 3.418684 AGTGTGATACCGAGCCTTTTT 57.581 42.857 0.00 0.00 0.00 1.94
421 422 0.036875 CACCTGGTTCTGGGAAGGTC 59.963 60.000 0.00 0.00 41.14 3.85
538 540 9.743057 TTTTCATTTTCAAAATACATGTCGACT 57.257 25.926 17.92 0.00 0.00 4.18
539 541 9.743057 TTTCATTTTCAAAATACATGTCGACTT 57.257 25.926 17.92 7.74 0.00 3.01
540 542 9.743057 TTCATTTTCAAAATACATGTCGACTTT 57.257 25.926 17.92 5.50 0.00 2.66
571 573 9.734620 AATACACATTGAACATAATACACATGC 57.265 29.630 0.00 0.00 0.00 4.06
621 626 7.866729 ACATGTTTTAATGTACATCGAACACA 58.133 30.769 22.89 20.37 39.01 3.72
637 642 4.386350 CGAACACATTTATACACACGGTGA 59.614 41.667 16.29 0.00 36.96 4.02
650 655 8.883789 ATACACACGGTGAATATTTTAAAACG 57.116 30.769 16.29 3.23 36.96 3.60
720 728 6.343716 TGAACATATTTTGGAATGCACAGT 57.656 33.333 0.00 0.00 0.00 3.55
905 921 9.327529 CGTCTCTTGGTTTAGATTACGTATATC 57.672 37.037 0.00 3.07 32.86 1.63
932 948 1.468520 CCGCCAACATGACCTAAACTG 59.531 52.381 0.00 0.00 0.00 3.16
1335 1355 6.869388 CCCTCTTCTCTGTTACTGTTCTTTAC 59.131 42.308 0.00 0.00 0.00 2.01
1358 1378 2.380084 TGCTTACAGAATCCCGTGTC 57.620 50.000 0.00 0.00 0.00 3.67
1361 1381 2.259618 CTTACAGAATCCCGTGTCGTG 58.740 52.381 0.00 0.00 0.00 4.35
1558 1586 4.821589 GTGGAGGAAGAGGGCGCG 62.822 72.222 0.00 0.00 0.00 6.86
1579 1607 0.547712 ACATACTGGTGGGCACTCCT 60.548 55.000 8.81 0.00 36.20 3.69
1647 1675 1.813513 CATCTCGAGGTTGCTTTGGT 58.186 50.000 13.56 0.00 0.00 3.67
1802 1831 2.743636 TTCAGAAGCAGGTTACCTCG 57.256 50.000 0.00 0.00 0.00 4.63
1877 1906 2.051518 AGAGGCAGTCGAGGAGCTG 61.052 63.158 0.00 0.55 35.93 4.24
1880 1909 4.828925 GCAGTCGAGGAGCTGGCC 62.829 72.222 0.00 0.00 33.62 5.36
1889 1918 2.034687 GAGCTGGCCAAAGCAGGA 59.965 61.111 18.35 0.00 46.08 3.86
1936 1965 0.539051 AAGACAGAGGCGAAGGATGG 59.461 55.000 0.00 0.00 0.00 3.51
2007 2036 3.494398 GGAGGTATGGCGAGATGCTTTTA 60.494 47.826 0.00 0.00 45.43 1.52
2237 2266 2.276201 TGGTGTAAGTACATGATGCGC 58.724 47.619 0.00 0.00 38.63 6.09
2251 2280 1.913403 GATGCGCGGAAATTTCAACAG 59.087 47.619 19.49 8.75 0.00 3.16
2553 2582 1.140052 CATATGTAGGGCCCACGTGAA 59.860 52.381 27.56 7.93 0.00 3.18
2664 2697 8.673711 GTTGATCTAATTGTGCAGGTTACATTA 58.326 33.333 0.00 0.00 0.00 1.90
2687 2720 3.725634 AGTGCTATGGTCTTACCCTTCT 58.274 45.455 0.00 0.00 37.50 2.85
2688 2721 4.880164 AGTGCTATGGTCTTACCCTTCTA 58.120 43.478 0.00 0.00 37.50 2.10
2689 2722 4.650131 AGTGCTATGGTCTTACCCTTCTAC 59.350 45.833 0.00 0.00 37.50 2.59
2690 2723 4.650131 GTGCTATGGTCTTACCCTTCTACT 59.350 45.833 0.00 0.00 37.50 2.57
2691 2724 4.894114 TGCTATGGTCTTACCCTTCTACTC 59.106 45.833 0.00 0.00 37.50 2.59
2692 2725 4.281435 GCTATGGTCTTACCCTTCTACTCC 59.719 50.000 0.00 0.00 37.50 3.85
2693 2726 3.111741 TGGTCTTACCCTTCTACTCCC 57.888 52.381 0.00 0.00 37.50 4.30
2694 2727 2.658489 TGGTCTTACCCTTCTACTCCCT 59.342 50.000 0.00 0.00 37.50 4.20
2695 2728 3.298619 GGTCTTACCCTTCTACTCCCTC 58.701 54.545 0.00 0.00 30.04 4.30
2696 2729 3.298619 GTCTTACCCTTCTACTCCCTCC 58.701 54.545 0.00 0.00 0.00 4.30
2697 2730 2.091994 TCTTACCCTTCTACTCCCTCCG 60.092 54.545 0.00 0.00 0.00 4.63
2698 2731 1.302907 TACCCTTCTACTCCCTCCGT 58.697 55.000 0.00 0.00 0.00 4.69
2699 2732 0.412640 ACCCTTCTACTCCCTCCGTT 59.587 55.000 0.00 0.00 0.00 4.44
2700 2733 1.112950 CCCTTCTACTCCCTCCGTTC 58.887 60.000 0.00 0.00 0.00 3.95
2701 2734 1.112950 CCTTCTACTCCCTCCGTTCC 58.887 60.000 0.00 0.00 0.00 3.62
2702 2735 1.618888 CCTTCTACTCCCTCCGTTCCA 60.619 57.143 0.00 0.00 0.00 3.53
2703 2736 2.176889 CTTCTACTCCCTCCGTTCCAA 58.823 52.381 0.00 0.00 0.00 3.53
2704 2737 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
2705 2738 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
2706 2739 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
2707 2740 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
2708 2741 4.966805 TCTACTCCCTCCGTTCCAAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
2709 2742 6.138263 TCTACTCCCTCCGTTCCAAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
2710 2743 5.703730 ACTCCCTCCGTTCCAAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
2711 2744 5.681639 ACTCCCTCCGTTCCAAAATATAAG 58.318 41.667 0.00 0.00 0.00 1.73
2712 2745 5.191124 ACTCCCTCCGTTCCAAAATATAAGT 59.809 40.000 0.00 0.00 0.00 2.24
2713 2746 5.677567 TCCCTCCGTTCCAAAATATAAGTC 58.322 41.667 0.00 0.00 0.00 3.01
2714 2747 5.427481 TCCCTCCGTTCCAAAATATAAGTCT 59.573 40.000 0.00 0.00 0.00 3.24
2715 2748 6.069847 TCCCTCCGTTCCAAAATATAAGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2716 2749 6.602009 CCCTCCGTTCCAAAATATAAGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
2717 2750 7.122204 CCCTCCGTTCCAAAATATAAGTCTTTT 59.878 37.037 0.00 0.00 0.00 2.27
2718 2751 9.169592 CCTCCGTTCCAAAATATAAGTCTTTTA 57.830 33.333 0.00 0.00 0.00 1.52
2735 2768 9.467796 AAGTCTTTTAAGAGATTCCAATAAGGG 57.532 33.333 0.00 0.00 35.02 3.95
2736 2769 8.836735 AGTCTTTTAAGAGATTCCAATAAGGGA 58.163 33.333 0.00 0.00 35.02 4.20
2737 2770 8.894731 GTCTTTTAAGAGATTCCAATAAGGGAC 58.105 37.037 0.00 0.00 34.24 4.46
2740 2773 9.901172 TTTTAAGAGATTCCAATAAGGGACTAC 57.099 33.333 0.00 0.00 38.49 2.73
2741 2774 8.618240 TTAAGAGATTCCAATAAGGGACTACA 57.382 34.615 0.00 0.00 38.49 2.74
2742 2775 7.698163 AAGAGATTCCAATAAGGGACTACAT 57.302 36.000 0.00 0.00 38.49 2.29
2743 2776 8.798975 AAGAGATTCCAATAAGGGACTACATA 57.201 34.615 0.00 0.00 38.49 2.29
2744 2777 8.196378 AGAGATTCCAATAAGGGACTACATAC 57.804 38.462 0.00 0.00 38.49 2.39
2745 2778 6.994221 AGATTCCAATAAGGGACTACATACG 58.006 40.000 0.00 0.00 38.49 3.06
2746 2779 5.540400 TTCCAATAAGGGACTACATACGG 57.460 43.478 0.00 0.00 38.49 4.02
2747 2780 4.806892 TCCAATAAGGGACTACATACGGA 58.193 43.478 0.00 0.00 38.49 4.69
2748 2781 4.831155 TCCAATAAGGGACTACATACGGAG 59.169 45.833 0.00 0.00 38.49 4.63
2749 2782 4.557205 CAATAAGGGACTACATACGGAGC 58.443 47.826 0.00 0.00 38.49 4.70
2750 2783 2.154567 AAGGGACTACATACGGAGCA 57.845 50.000 0.00 0.00 38.49 4.26
2751 2784 2.154567 AGGGACTACATACGGAGCAA 57.845 50.000 0.00 0.00 36.02 3.91
2752 2785 2.463752 AGGGACTACATACGGAGCAAA 58.536 47.619 0.00 0.00 36.02 3.68
2753 2786 2.835764 AGGGACTACATACGGAGCAAAA 59.164 45.455 0.00 0.00 36.02 2.44
2754 2787 3.454812 AGGGACTACATACGGAGCAAAAT 59.545 43.478 0.00 0.00 36.02 1.82
2755 2788 3.560068 GGGACTACATACGGAGCAAAATG 59.440 47.826 0.00 0.00 0.00 2.32
2756 2789 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
2757 2790 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
2758 2791 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2759 2792 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2760 2793 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2761 2794 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2762 2795 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
2763 2796 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
2764 2797 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
2765 2798 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
2766 2799 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
2767 2800 4.259970 CGGAGCAAAATGAGTGAATCTACG 60.260 45.833 0.00 0.00 0.00 3.51
2768 2801 4.631813 GGAGCAAAATGAGTGAATCTACGT 59.368 41.667 0.00 0.00 0.00 3.57
2769 2802 5.122396 GGAGCAAAATGAGTGAATCTACGTT 59.878 40.000 0.00 0.00 0.00 3.99
2770 2803 6.170675 AGCAAAATGAGTGAATCTACGTTC 57.829 37.500 0.00 0.00 0.00 3.95
2771 2804 5.934625 AGCAAAATGAGTGAATCTACGTTCT 59.065 36.000 0.00 0.00 0.00 3.01
2772 2805 7.097192 AGCAAAATGAGTGAATCTACGTTCTA 58.903 34.615 0.00 0.00 0.00 2.10
2773 2806 7.602644 AGCAAAATGAGTGAATCTACGTTCTAA 59.397 33.333 0.00 0.00 0.00 2.10
2774 2807 8.227791 GCAAAATGAGTGAATCTACGTTCTAAA 58.772 33.333 0.00 0.00 0.00 1.85
2810 2843 6.621316 ACATCCGTATGTAGTCTCTTAGTG 57.379 41.667 0.00 0.00 44.66 2.74
2811 2844 6.354938 ACATCCGTATGTAGTCTCTTAGTGA 58.645 40.000 0.00 0.00 44.66 3.41
2812 2845 6.827251 ACATCCGTATGTAGTCTCTTAGTGAA 59.173 38.462 0.00 0.00 44.66 3.18
2813 2846 7.338703 ACATCCGTATGTAGTCTCTTAGTGAAA 59.661 37.037 0.00 0.00 44.66 2.69
2814 2847 7.876936 TCCGTATGTAGTCTCTTAGTGAAAT 57.123 36.000 0.00 0.00 0.00 2.17
2815 2848 7.928103 TCCGTATGTAGTCTCTTAGTGAAATC 58.072 38.462 0.00 0.00 0.00 2.17
2816 2849 7.774157 TCCGTATGTAGTCTCTTAGTGAAATCT 59.226 37.037 0.00 0.00 0.00 2.40
2817 2850 8.071368 CCGTATGTAGTCTCTTAGTGAAATCTC 58.929 40.741 0.00 0.00 0.00 2.75
2818 2851 8.832521 CGTATGTAGTCTCTTAGTGAAATCTCT 58.167 37.037 0.00 0.00 0.00 3.10
2822 2855 9.961264 TGTAGTCTCTTAGTGAAATCTCTAGAA 57.039 33.333 0.00 0.00 0.00 2.10
2825 2858 9.747898 AGTCTCTTAGTGAAATCTCTAGAAAGA 57.252 33.333 0.00 0.00 0.00 2.52
2826 2859 9.783256 GTCTCTTAGTGAAATCTCTAGAAAGAC 57.217 37.037 0.00 11.17 0.00 3.01
2827 2860 9.747898 TCTCTTAGTGAAATCTCTAGAAAGACT 57.252 33.333 0.00 0.00 0.00 3.24
2845 2878 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2846 2879 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2847 2880 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2848 2881 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2907 2941 7.492352 AAGTGTGTATTCTGTTTTCCAGTAC 57.508 36.000 0.00 0.00 42.19 2.73
2941 2975 4.442706 AGATCCCAATGTGTTCGTACATC 58.557 43.478 0.00 0.00 40.24 3.06
3157 3198 2.743183 GCAGGAGGATGCTTACGTTGAT 60.743 50.000 0.00 0.00 43.07 2.57
3250 3291 7.278868 CCACAGGTTAGTTTCTTCTGTATCATC 59.721 40.741 0.00 0.00 36.98 2.92
3282 3327 1.603739 GGTCCCCACTTGAGCCAAC 60.604 63.158 0.00 0.00 0.00 3.77
3352 3397 3.754965 ACCTTTGTGCTGCAGATTAGAA 58.245 40.909 20.43 4.70 0.00 2.10
3405 3450 0.954452 AAGGGCTTCGAGCTTTTGTG 59.046 50.000 6.78 0.00 41.99 3.33
3613 3658 3.380479 TCAAGTAAGAACCGTGTCCAG 57.620 47.619 0.00 0.00 0.00 3.86
3617 3662 2.036862 AGTAAGAACCGTGTCCAGGAAC 59.963 50.000 0.00 0.00 0.00 3.62
3646 3691 5.963176 TTATTTGCATTGTCTCAGCTGAA 57.037 34.783 18.85 2.60 0.00 3.02
3661 3706 7.379797 GTCTCAGCTGAACCATTTTCTTTTAAC 59.620 37.037 18.85 0.00 0.00 2.01
3662 3707 7.068103 TCTCAGCTGAACCATTTTCTTTTAACA 59.932 33.333 18.85 0.00 0.00 2.41
3665 3710 8.829612 CAGCTGAACCATTTTCTTTTAACAAAT 58.170 29.630 8.42 0.00 0.00 2.32
3709 3754 5.951148 TGTGATATGATCCATGTGTTGGTTT 59.049 36.000 0.00 0.00 46.52 3.27
3723 3768 8.914654 CATGTGTTGGTTTGAGTAATTATGTTG 58.085 33.333 0.00 0.00 0.00 3.33
3789 3835 4.846779 TGAAACCCTCAAATTCCTTTCG 57.153 40.909 0.00 0.00 0.00 3.46
3797 3843 6.266786 ACCCTCAAATTCCTTTCGTATGTTTT 59.733 34.615 0.00 0.00 0.00 2.43
3811 3857 6.220201 TCGTATGTTTTGATGTCAAGAGTCA 58.780 36.000 0.00 0.00 37.15 3.41
3863 3912 3.766591 TGACATGTTTCCTGTGTTGGTTT 59.233 39.130 0.00 0.00 0.00 3.27
3959 4008 0.616111 GCCAGTCCCAGAGAAGAGGA 60.616 60.000 0.00 0.00 0.00 3.71
4026 4075 1.088340 CAGCGCCAGACAATCCAGAG 61.088 60.000 2.29 0.00 0.00 3.35
4099 4148 1.583967 GCGTGGAGTGATCGACGAG 60.584 63.158 15.42 0.00 42.90 4.18
4183 4232 2.203773 GGCAGGGGCAAAGGGAAA 60.204 61.111 0.00 0.00 43.71 3.13
4292 4341 7.230108 TGAAGAGCAAGAGAAGATGAAAATGTT 59.770 33.333 0.00 0.00 0.00 2.71
4307 4356 9.643693 GATGAAAATGTTTGTGTATCTTTGGAT 57.356 29.630 0.00 0.00 36.07 3.41
4430 4481 3.686128 CGGTTTTCATGTTCACACGAAA 58.314 40.909 0.00 0.00 36.44 3.46
4431 4482 4.099120 CGGTTTTCATGTTCACACGAAAA 58.901 39.130 9.29 9.29 43.07 2.29
4432 4483 4.737765 CGGTTTTCATGTTCACACGAAAAT 59.262 37.500 14.88 0.00 45.56 1.82
4433 4484 5.331458 CGGTTTTCATGTTCACACGAAAATG 60.331 40.000 14.88 4.36 45.56 2.32
4454 4505 8.417780 AAATGAAATTTTCATGTTCACACGAA 57.582 26.923 22.00 0.00 46.10 3.85
4534 4619 0.031817 AATGGGAGGGGAAATGCCAG 60.032 55.000 0.00 0.00 41.85 4.85
4551 4636 2.877168 GCCAGGAGCAATCATAACAGAG 59.123 50.000 0.00 0.00 42.97 3.35
4594 4680 2.026641 CAATTTCGGAGGTCATGCCAT 58.973 47.619 8.58 0.00 40.61 4.40
4609 4695 7.067008 AGGTCATGCCATAAGTATAAAACACAC 59.933 37.037 8.58 0.00 40.61 3.82
4610 4696 7.193595 GTCATGCCATAAGTATAAAACACACC 58.806 38.462 0.00 0.00 0.00 4.16
4611 4697 6.887002 TCATGCCATAAGTATAAAACACACCA 59.113 34.615 0.00 0.00 0.00 4.17
4612 4698 7.394641 TCATGCCATAAGTATAAAACACACCAA 59.605 33.333 0.00 0.00 0.00 3.67
4613 4699 7.151999 TGCCATAAGTATAAAACACACCAAG 57.848 36.000 0.00 0.00 0.00 3.61
4615 4701 7.231722 TGCCATAAGTATAAAACACACCAAGTT 59.768 33.333 0.00 0.00 0.00 2.66
4617 4703 9.620660 CCATAAGTATAAAACACACCAAGTTTC 57.379 33.333 0.00 0.00 38.17 2.78
4620 4706 8.514330 AAGTATAAAACACACCAAGTTTCTCA 57.486 30.769 0.00 0.00 38.17 3.27
4624 4722 5.913137 AAACACACCAAGTTTCTCATGAA 57.087 34.783 0.00 0.00 34.27 2.57
4724 4822 1.880027 CTGTTAGTTGAACCTGGCACC 59.120 52.381 0.00 0.00 37.22 5.01
4758 4856 1.321016 CGAATGCGCAAAGTTCACTG 58.679 50.000 17.11 0.00 0.00 3.66
4813 4911 1.562008 TCTTCACACAGTTTGGGGTCA 59.438 47.619 0.00 0.00 0.00 4.02
4815 4913 2.051334 TCACACAGTTTGGGGTCAAG 57.949 50.000 0.00 0.00 33.98 3.02
4865 4970 1.988293 TGGACCGCCAAATTTGAAGA 58.012 45.000 19.86 0.00 42.49 2.87
4868 4973 2.328473 GACCGCCAAATTTGAAGAAGC 58.672 47.619 19.86 12.30 0.00 3.86
4880 4985 2.493035 TGAAGAAGCGCAGATGAAACA 58.507 42.857 11.47 0.00 0.00 2.83
4897 5002 4.039488 TGAAACAATGCAAGGAGAAATGCT 59.961 37.500 0.00 0.00 42.97 3.79
4915 5020 4.892965 TGGGCGGCCATGGCATAC 62.893 66.667 36.56 24.14 44.11 2.39
4948 5053 7.118825 CAGAAAATACCATGAGATATGCGATGT 59.881 37.037 0.00 0.00 0.00 3.06
4967 5072 6.292381 GCGATGTTATTGAGTAAAGTAGCTGG 60.292 42.308 0.00 0.00 0.00 4.85
4971 5076 4.559862 ATTGAGTAAAGTAGCTGGCACT 57.440 40.909 0.00 0.00 0.00 4.40
4972 5077 3.319137 TGAGTAAAGTAGCTGGCACTG 57.681 47.619 0.00 0.00 0.00 3.66
4978 5083 0.038744 AGTAGCTGGCACTGGCAAAT 59.961 50.000 6.75 0.97 43.71 2.32
4986 5091 4.441913 GCTGGCACTGGCAAATAAATATGT 60.442 41.667 6.75 0.00 43.71 2.29
4992 5097 3.027412 TGGCAAATAAATATGTGGCGGT 58.973 40.909 11.27 0.00 46.31 5.68
4993 5098 3.181482 TGGCAAATAAATATGTGGCGGTG 60.181 43.478 11.27 0.00 46.31 4.94
5006 5111 3.864686 CGGTGGCTCGAAATGCGG 61.865 66.667 0.00 0.00 41.33 5.69
5015 5120 3.354397 GCTCGAAATGCGGTAAATTCAG 58.646 45.455 0.00 0.00 41.33 3.02
5024 5129 1.743394 CGGTAAATTCAGGCTGGAACC 59.257 52.381 15.73 9.89 0.00 3.62
5025 5130 2.802719 GGTAAATTCAGGCTGGAACCA 58.197 47.619 15.73 0.00 0.00 3.67
5041 5146 0.405585 ACCAGACACAATTCAGGGGG 59.594 55.000 0.00 0.00 0.00 5.40
5088 5193 5.449588 GCACACCTATTTGATGAACTGATGG 60.450 44.000 0.00 0.00 0.00 3.51
5230 5337 5.749596 TTGATGAACTGGTGTTTACTGTG 57.250 39.130 0.00 0.00 36.39 3.66
5256 5363 2.195922 GGAAAATCGTGATGCAATGGC 58.804 47.619 0.00 0.00 41.68 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.315690 ATGAGCCGAGCCAATCATTG 58.684 50.000 0.00 0.00 0.00 2.82
1 2 1.679680 CAATGAGCCGAGCCAATCATT 59.320 47.619 6.22 6.22 41.77 2.57
2 3 1.315690 CAATGAGCCGAGCCAATCAT 58.684 50.000 0.00 0.00 33.91 2.45
3 4 1.378882 GCAATGAGCCGAGCCAATCA 61.379 55.000 0.00 0.00 37.23 2.57
4 5 1.358046 GCAATGAGCCGAGCCAATC 59.642 57.895 0.00 0.00 37.23 2.67
5 6 3.518003 GCAATGAGCCGAGCCAAT 58.482 55.556 0.00 0.00 37.23 3.16
15 16 1.536766 TCACGCTCTTTTGGCAATGAG 59.463 47.619 19.79 19.79 37.28 2.90
16 17 1.536766 CTCACGCTCTTTTGGCAATGA 59.463 47.619 0.00 1.91 0.00 2.57
17 18 1.401931 CCTCACGCTCTTTTGGCAATG 60.402 52.381 0.00 0.00 0.00 2.82
18 19 0.883833 CCTCACGCTCTTTTGGCAAT 59.116 50.000 0.00 0.00 0.00 3.56
19 20 0.465460 ACCTCACGCTCTTTTGGCAA 60.465 50.000 0.00 0.00 0.00 4.52
20 21 1.148273 ACCTCACGCTCTTTTGGCA 59.852 52.632 0.00 0.00 0.00 4.92
21 22 0.884704 TCACCTCACGCTCTTTTGGC 60.885 55.000 0.00 0.00 0.00 4.52
22 23 1.532868 CTTCACCTCACGCTCTTTTGG 59.467 52.381 0.00 0.00 0.00 3.28
23 24 1.069636 GCTTCACCTCACGCTCTTTTG 60.070 52.381 0.00 0.00 0.00 2.44
24 25 1.230324 GCTTCACCTCACGCTCTTTT 58.770 50.000 0.00 0.00 0.00 2.27
25 26 0.946221 CGCTTCACCTCACGCTCTTT 60.946 55.000 0.00 0.00 0.00 2.52
26 27 1.373497 CGCTTCACCTCACGCTCTT 60.373 57.895 0.00 0.00 0.00 2.85
27 28 2.206515 CTCGCTTCACCTCACGCTCT 62.207 60.000 0.00 0.00 0.00 4.09
28 29 1.803519 CTCGCTTCACCTCACGCTC 60.804 63.158 0.00 0.00 0.00 5.03
29 30 2.259818 CTCGCTTCACCTCACGCT 59.740 61.111 0.00 0.00 0.00 5.07
30 31 3.482783 GCTCGCTTCACCTCACGC 61.483 66.667 0.00 0.00 0.00 5.34
31 32 2.811317 GGCTCGCTTCACCTCACG 60.811 66.667 0.00 0.00 0.00 4.35
32 33 2.765250 TTCGGCTCGCTTCACCTCAC 62.765 60.000 0.00 0.00 0.00 3.51
33 34 2.570284 TTCGGCTCGCTTCACCTCA 61.570 57.895 0.00 0.00 0.00 3.86
34 35 2.095252 GTTCGGCTCGCTTCACCTC 61.095 63.158 0.00 0.00 0.00 3.85
35 36 2.048127 GTTCGGCTCGCTTCACCT 60.048 61.111 0.00 0.00 0.00 4.00
36 37 1.503818 TTTGTTCGGCTCGCTTCACC 61.504 55.000 0.00 0.00 0.00 4.02
37 38 0.384353 GTTTGTTCGGCTCGCTTCAC 60.384 55.000 0.00 0.00 0.00 3.18
38 39 1.827315 CGTTTGTTCGGCTCGCTTCA 61.827 55.000 0.00 0.00 0.00 3.02
39 40 1.154654 CGTTTGTTCGGCTCGCTTC 60.155 57.895 0.00 0.00 0.00 3.86
40 41 1.557443 CTCGTTTGTTCGGCTCGCTT 61.557 55.000 0.00 0.00 0.00 4.68
41 42 2.022129 CTCGTTTGTTCGGCTCGCT 61.022 57.895 0.00 0.00 0.00 4.93
42 43 2.470286 CTCGTTTGTTCGGCTCGC 59.530 61.111 0.00 0.00 0.00 5.03
43 44 1.827315 TTGCTCGTTTGTTCGGCTCG 61.827 55.000 0.00 0.00 0.00 5.03
44 45 0.110644 CTTGCTCGTTTGTTCGGCTC 60.111 55.000 0.00 0.00 0.00 4.70
45 46 1.941812 CTTGCTCGTTTGTTCGGCT 59.058 52.632 0.00 0.00 0.00 5.52
46 47 1.725973 GCTTGCTCGTTTGTTCGGC 60.726 57.895 0.00 0.00 0.00 5.54
47 48 1.438710 CGCTTGCTCGTTTGTTCGG 60.439 57.895 0.00 0.00 0.00 4.30
48 49 1.275657 ACGCTTGCTCGTTTGTTCG 59.724 52.632 0.00 0.00 40.07 3.95
55 56 2.914379 AGCTTTAACGCTTGCTCGT 58.086 47.368 0.00 0.00 45.58 4.18
62 63 3.490249 GGTGGACAAAAAGCTTTAACGCT 60.490 43.478 13.10 0.00 43.31 5.07
63 64 2.792674 GGTGGACAAAAAGCTTTAACGC 59.207 45.455 13.10 7.66 0.00 4.84
64 65 4.201970 TGAGGTGGACAAAAAGCTTTAACG 60.202 41.667 13.10 6.50 0.00 3.18
65 66 5.041287 GTGAGGTGGACAAAAAGCTTTAAC 58.959 41.667 13.10 0.00 0.00 2.01
66 67 4.201970 CGTGAGGTGGACAAAAAGCTTTAA 60.202 41.667 13.10 0.00 0.00 1.52
67 68 3.314080 CGTGAGGTGGACAAAAAGCTTTA 59.686 43.478 13.10 0.00 0.00 1.85
68 69 2.099098 CGTGAGGTGGACAAAAAGCTTT 59.901 45.455 5.69 5.69 0.00 3.51
69 70 1.676006 CGTGAGGTGGACAAAAAGCTT 59.324 47.619 0.00 0.00 0.00 3.74
70 71 1.308998 CGTGAGGTGGACAAAAAGCT 58.691 50.000 0.00 0.00 0.00 3.74
71 72 0.317854 GCGTGAGGTGGACAAAAAGC 60.318 55.000 0.00 0.00 0.00 3.51
72 73 1.264288 GAGCGTGAGGTGGACAAAAAG 59.736 52.381 0.00 0.00 45.11 2.27
73 74 1.305201 GAGCGTGAGGTGGACAAAAA 58.695 50.000 0.00 0.00 45.11 1.94
74 75 0.878523 CGAGCGTGAGGTGGACAAAA 60.879 55.000 0.00 0.00 45.11 2.44
75 76 1.300620 CGAGCGTGAGGTGGACAAA 60.301 57.895 0.00 0.00 45.11 2.83
76 77 2.023414 AACGAGCGTGAGGTGGACAA 62.023 55.000 0.00 0.00 45.11 3.18
77 78 2.023414 AAACGAGCGTGAGGTGGACA 62.023 55.000 0.00 0.00 45.11 4.02
78 79 1.300697 AAACGAGCGTGAGGTGGAC 60.301 57.895 0.00 0.00 45.11 4.02
79 80 1.300620 CAAACGAGCGTGAGGTGGA 60.301 57.895 0.00 0.00 45.11 4.02
80 81 2.317609 CCAAACGAGCGTGAGGTGG 61.318 63.158 0.00 0.00 45.11 4.61
81 82 2.317609 CCCAAACGAGCGTGAGGTG 61.318 63.158 11.39 2.62 45.11 4.00
83 84 1.079127 ATCCCAAACGAGCGTGAGG 60.079 57.895 0.00 1.72 0.00 3.86
84 85 1.970917 GCATCCCAAACGAGCGTGAG 61.971 60.000 0.00 0.00 0.00 3.51
85 86 2.032634 GCATCCCAAACGAGCGTGA 61.033 57.895 0.00 0.00 0.00 4.35
86 87 1.647545 ATGCATCCCAAACGAGCGTG 61.648 55.000 0.00 0.00 0.00 5.34
87 88 1.369091 GATGCATCCCAAACGAGCGT 61.369 55.000 16.23 0.00 0.00 5.07
88 89 1.353103 GATGCATCCCAAACGAGCG 59.647 57.895 16.23 0.00 0.00 5.03
89 90 1.031571 TGGATGCATCCCAAACGAGC 61.032 55.000 36.97 13.97 46.59 5.03
90 91 1.605710 GATGGATGCATCCCAAACGAG 59.394 52.381 36.97 0.00 46.59 4.18
91 92 1.679139 GATGGATGCATCCCAAACGA 58.321 50.000 36.97 21.36 46.59 3.85
92 93 0.308684 CGATGGATGCATCCCAAACG 59.691 55.000 36.97 29.80 46.59 3.60
93 94 0.670162 CCGATGGATGCATCCCAAAC 59.330 55.000 36.97 24.34 46.59 2.93
94 95 0.258484 ACCGATGGATGCATCCCAAA 59.742 50.000 36.97 22.78 46.59 3.28
95 96 0.179020 GACCGATGGATGCATCCCAA 60.179 55.000 36.97 23.49 46.59 4.12
96 97 1.056125 AGACCGATGGATGCATCCCA 61.056 55.000 36.97 26.38 46.59 4.37
97 98 0.321122 GAGACCGATGGATGCATCCC 60.321 60.000 36.97 23.94 46.59 3.85
99 100 1.506493 GTGAGACCGATGGATGCATC 58.494 55.000 18.81 18.81 0.00 3.91
100 101 0.107456 GGTGAGACCGATGGATGCAT 59.893 55.000 0.00 0.00 0.00 3.96
101 102 0.977627 AGGTGAGACCGATGGATGCA 60.978 55.000 0.00 0.00 44.90 3.96
102 103 0.531532 CAGGTGAGACCGATGGATGC 60.532 60.000 0.00 0.00 44.90 3.91
103 104 0.826715 ACAGGTGAGACCGATGGATG 59.173 55.000 0.00 0.00 44.90 3.51
104 105 2.311463 CTACAGGTGAGACCGATGGAT 58.689 52.381 0.00 0.00 44.90 3.41
105 106 1.685180 CCTACAGGTGAGACCGATGGA 60.685 57.143 0.00 0.00 44.90 3.41
106 107 0.747255 CCTACAGGTGAGACCGATGG 59.253 60.000 0.00 0.00 44.90 3.51
107 108 0.747255 CCCTACAGGTGAGACCGATG 59.253 60.000 0.00 0.00 44.90 3.84
108 109 0.629596 TCCCTACAGGTGAGACCGAT 59.370 55.000 0.00 0.00 44.90 4.18
109 110 0.629596 ATCCCTACAGGTGAGACCGA 59.370 55.000 0.00 0.00 44.90 4.69
110 111 1.033574 GATCCCTACAGGTGAGACCG 58.966 60.000 0.00 0.00 44.90 4.79
111 112 1.033574 CGATCCCTACAGGTGAGACC 58.966 60.000 0.00 0.00 38.99 3.85
112 113 1.677052 GTCGATCCCTACAGGTGAGAC 59.323 57.143 0.00 0.00 36.75 3.36
113 114 1.746171 CGTCGATCCCTACAGGTGAGA 60.746 57.143 0.00 0.00 36.75 3.27
114 115 0.663688 CGTCGATCCCTACAGGTGAG 59.336 60.000 0.00 0.00 36.75 3.51
115 116 0.253894 TCGTCGATCCCTACAGGTGA 59.746 55.000 0.00 0.00 36.75 4.02
116 117 1.065701 CTTCGTCGATCCCTACAGGTG 59.934 57.143 0.00 0.00 36.75 4.00
117 118 1.340795 ACTTCGTCGATCCCTACAGGT 60.341 52.381 0.00 0.00 36.75 4.00
118 119 1.065701 CACTTCGTCGATCCCTACAGG 59.934 57.143 0.00 0.00 0.00 4.00
119 120 1.743958 ACACTTCGTCGATCCCTACAG 59.256 52.381 0.00 0.00 0.00 2.74
120 121 1.471287 CACACTTCGTCGATCCCTACA 59.529 52.381 0.00 0.00 0.00 2.74
121 122 1.798079 GCACACTTCGTCGATCCCTAC 60.798 57.143 0.00 0.00 0.00 3.18
122 123 0.454600 GCACACTTCGTCGATCCCTA 59.545 55.000 0.00 0.00 0.00 3.53
123 124 1.215647 GCACACTTCGTCGATCCCT 59.784 57.895 0.00 0.00 0.00 4.20
124 125 1.078759 CAGCACACTTCGTCGATCCC 61.079 60.000 0.00 0.00 0.00 3.85
125 126 1.078759 CCAGCACACTTCGTCGATCC 61.079 60.000 0.00 0.00 0.00 3.36
126 127 1.687494 GCCAGCACACTTCGTCGATC 61.687 60.000 0.00 0.00 0.00 3.69
127 128 1.738099 GCCAGCACACTTCGTCGAT 60.738 57.895 0.00 0.00 0.00 3.59
128 129 2.355837 GCCAGCACACTTCGTCGA 60.356 61.111 0.00 0.00 0.00 4.20
129 130 2.356313 AGCCAGCACACTTCGTCG 60.356 61.111 0.00 0.00 0.00 5.12
130 131 0.880278 TTCAGCCAGCACACTTCGTC 60.880 55.000 0.00 0.00 0.00 4.20
131 132 0.250467 ATTCAGCCAGCACACTTCGT 60.250 50.000 0.00 0.00 0.00 3.85
132 133 1.725641 TATTCAGCCAGCACACTTCG 58.274 50.000 0.00 0.00 0.00 3.79
133 134 2.421424 CCTTATTCAGCCAGCACACTTC 59.579 50.000 0.00 0.00 0.00 3.01
134 135 2.440409 CCTTATTCAGCCAGCACACTT 58.560 47.619 0.00 0.00 0.00 3.16
135 136 1.952367 GCCTTATTCAGCCAGCACACT 60.952 52.381 0.00 0.00 0.00 3.55
136 137 0.453390 GCCTTATTCAGCCAGCACAC 59.547 55.000 0.00 0.00 0.00 3.82
137 138 2.872408 GCCTTATTCAGCCAGCACA 58.128 52.632 0.00 0.00 0.00 4.57
143 144 3.953887 GCGCGGCCTTATTCAGCC 61.954 66.667 8.83 0.00 46.17 4.85
144 145 2.472909 AAGCGCGGCCTTATTCAGC 61.473 57.895 8.83 0.00 0.00 4.26
145 146 1.353103 CAAGCGCGGCCTTATTCAG 59.647 57.895 8.83 0.00 0.00 3.02
146 147 2.112198 CCAAGCGCGGCCTTATTCA 61.112 57.895 8.83 0.00 0.00 2.57
147 148 0.812412 TACCAAGCGCGGCCTTATTC 60.812 55.000 8.83 0.00 0.00 1.75
148 149 0.179029 ATACCAAGCGCGGCCTTATT 60.179 50.000 8.83 0.00 0.00 1.40
149 150 0.682852 TATACCAAGCGCGGCCTTAT 59.317 50.000 8.83 0.00 0.00 1.73
150 151 0.032952 CTATACCAAGCGCGGCCTTA 59.967 55.000 8.83 0.00 0.00 2.69
151 152 1.227556 CTATACCAAGCGCGGCCTT 60.228 57.895 8.83 0.00 0.00 4.35
152 153 1.968050 AACTATACCAAGCGCGGCCT 61.968 55.000 8.83 0.00 0.00 5.19
153 154 1.523032 AACTATACCAAGCGCGGCC 60.523 57.895 8.83 0.00 0.00 6.13
154 155 1.087771 ACAACTATACCAAGCGCGGC 61.088 55.000 8.83 0.00 0.00 6.53
155 156 2.212869 TACAACTATACCAAGCGCGG 57.787 50.000 8.83 0.00 0.00 6.46
156 157 5.461078 ACTTATTACAACTATACCAAGCGCG 59.539 40.000 0.00 0.00 0.00 6.86
157 158 6.839820 ACTTATTACAACTATACCAAGCGC 57.160 37.500 0.00 0.00 0.00 5.92
184 185 2.296073 ACAACTATCCCCCGCAAAAA 57.704 45.000 0.00 0.00 0.00 1.94
185 186 3.436577 TTACAACTATCCCCCGCAAAA 57.563 42.857 0.00 0.00 0.00 2.44
186 187 3.655615 ATTACAACTATCCCCCGCAAA 57.344 42.857 0.00 0.00 0.00 3.68
187 188 4.164604 ACTTATTACAACTATCCCCCGCAA 59.835 41.667 0.00 0.00 0.00 4.85
188 189 3.712733 ACTTATTACAACTATCCCCCGCA 59.287 43.478 0.00 0.00 0.00 5.69
189 190 4.347360 ACTTATTACAACTATCCCCCGC 57.653 45.455 0.00 0.00 0.00 6.13
190 191 9.428097 GTATTAACTTATTACAACTATCCCCCG 57.572 37.037 0.00 0.00 0.00 5.73
213 214 8.578151 ACACCCAAAAATTTAATACACGTGTAT 58.422 29.630 30.78 30.78 42.60 2.29
214 215 7.938715 ACACCCAAAAATTTAATACACGTGTA 58.061 30.769 29.15 29.15 34.67 2.90
215 216 6.807789 ACACCCAAAAATTTAATACACGTGT 58.192 32.000 26.52 26.52 0.00 4.49
216 217 8.798748 TTACACCCAAAAATTTAATACACGTG 57.201 30.769 15.48 15.48 0.00 4.49
217 218 9.984190 AATTACACCCAAAAATTTAATACACGT 57.016 25.926 0.00 0.00 0.00 4.49
223 224 9.438228 CCGGTAAATTACACCCAAAAATTTAAT 57.562 29.630 5.45 0.00 37.02 1.40
224 225 7.387122 GCCGGTAAATTACACCCAAAAATTTAA 59.613 33.333 1.90 0.00 37.02 1.52
225 226 6.872547 GCCGGTAAATTACACCCAAAAATTTA 59.127 34.615 1.90 0.00 35.20 1.40
226 227 5.701750 GCCGGTAAATTACACCCAAAAATTT 59.298 36.000 1.90 0.00 36.87 1.82
227 228 5.239351 GCCGGTAAATTACACCCAAAAATT 58.761 37.500 1.90 0.00 31.96 1.82
228 229 4.322877 GGCCGGTAAATTACACCCAAAAAT 60.323 41.667 1.90 0.00 31.96 1.82
229 230 3.006644 GGCCGGTAAATTACACCCAAAAA 59.993 43.478 1.90 0.00 31.96 1.94
230 231 2.561858 GGCCGGTAAATTACACCCAAAA 59.438 45.455 1.90 0.00 31.96 2.44
231 232 2.169330 GGCCGGTAAATTACACCCAAA 58.831 47.619 1.90 0.00 31.96 3.28
232 233 1.075050 TGGCCGGTAAATTACACCCAA 59.925 47.619 1.90 0.00 31.96 4.12
233 234 0.697079 TGGCCGGTAAATTACACCCA 59.303 50.000 1.90 5.24 31.96 4.51
234 235 1.746787 CTTGGCCGGTAAATTACACCC 59.253 52.381 1.90 2.82 31.96 4.61
235 236 2.681344 CTCTTGGCCGGTAAATTACACC 59.319 50.000 1.90 4.14 0.00 4.16
236 237 3.340928 ACTCTTGGCCGGTAAATTACAC 58.659 45.455 1.90 0.00 0.00 2.90
237 238 3.706600 ACTCTTGGCCGGTAAATTACA 57.293 42.857 1.90 0.00 0.00 2.41
238 239 5.181009 ACTAACTCTTGGCCGGTAAATTAC 58.819 41.667 1.90 0.00 0.00 1.89
239 240 5.425196 ACTAACTCTTGGCCGGTAAATTA 57.575 39.130 1.90 0.00 0.00 1.40
240 241 4.296621 ACTAACTCTTGGCCGGTAAATT 57.703 40.909 1.90 0.00 0.00 1.82
241 242 3.994931 ACTAACTCTTGGCCGGTAAAT 57.005 42.857 1.90 0.00 0.00 1.40
242 243 3.775261 AACTAACTCTTGGCCGGTAAA 57.225 42.857 1.90 0.00 0.00 2.01
243 244 3.775261 AAACTAACTCTTGGCCGGTAA 57.225 42.857 1.90 0.00 0.00 2.85
244 245 3.404899 CAAAACTAACTCTTGGCCGGTA 58.595 45.455 1.90 0.00 0.00 4.02
245 246 2.227194 CAAAACTAACTCTTGGCCGGT 58.773 47.619 1.90 0.00 0.00 5.28
246 247 1.539827 CCAAAACTAACTCTTGGCCGG 59.460 52.381 0.00 0.00 33.65 6.13
247 248 2.989422 CCAAAACTAACTCTTGGCCG 57.011 50.000 0.00 0.00 33.65 6.13
250 251 6.568653 GCTTTCTAGCCAAAACTAACTCTTGG 60.569 42.308 0.00 0.00 41.74 3.61
251 252 6.374578 GCTTTCTAGCCAAAACTAACTCTTG 58.625 40.000 0.00 0.00 41.74 3.02
252 253 6.561737 GCTTTCTAGCCAAAACTAACTCTT 57.438 37.500 0.00 0.00 41.74 2.85
267 268 3.181520 CCATCCGTCGTTTTGCTTTCTAG 60.182 47.826 0.00 0.00 0.00 2.43
268 269 2.739913 CCATCCGTCGTTTTGCTTTCTA 59.260 45.455 0.00 0.00 0.00 2.10
269 270 1.535462 CCATCCGTCGTTTTGCTTTCT 59.465 47.619 0.00 0.00 0.00 2.52
270 271 1.533731 TCCATCCGTCGTTTTGCTTTC 59.466 47.619 0.00 0.00 0.00 2.62
271 272 1.535462 CTCCATCCGTCGTTTTGCTTT 59.465 47.619 0.00 0.00 0.00 3.51
272 273 1.156736 CTCCATCCGTCGTTTTGCTT 58.843 50.000 0.00 0.00 0.00 3.91
273 274 0.320374 TCTCCATCCGTCGTTTTGCT 59.680 50.000 0.00 0.00 0.00 3.91
274 275 1.327764 GATCTCCATCCGTCGTTTTGC 59.672 52.381 0.00 0.00 0.00 3.68
275 276 2.604914 CAGATCTCCATCCGTCGTTTTG 59.395 50.000 0.00 0.00 0.00 2.44
276 277 2.233922 ACAGATCTCCATCCGTCGTTTT 59.766 45.455 0.00 0.00 0.00 2.43
277 278 1.825474 ACAGATCTCCATCCGTCGTTT 59.175 47.619 0.00 0.00 0.00 3.60
278 279 1.475403 ACAGATCTCCATCCGTCGTT 58.525 50.000 0.00 0.00 0.00 3.85
279 280 2.343484 TACAGATCTCCATCCGTCGT 57.657 50.000 0.00 0.00 0.00 4.34
280 281 3.924918 ATTACAGATCTCCATCCGTCG 57.075 47.619 0.00 0.00 0.00 5.12
281 282 6.927294 AAAAATTACAGATCTCCATCCGTC 57.073 37.500 0.00 0.00 0.00 4.79
282 283 6.479001 CGTAAAAATTACAGATCTCCATCCGT 59.521 38.462 0.00 0.00 0.00 4.69
283 284 6.073765 CCGTAAAAATTACAGATCTCCATCCG 60.074 42.308 0.00 0.00 0.00 4.18
284 285 6.204882 CCCGTAAAAATTACAGATCTCCATCC 59.795 42.308 0.00 0.00 0.00 3.51
285 286 6.766467 ACCCGTAAAAATTACAGATCTCCATC 59.234 38.462 0.00 0.00 0.00 3.51
286 287 6.542370 CACCCGTAAAAATTACAGATCTCCAT 59.458 38.462 0.00 0.00 0.00 3.41
287 288 5.878116 CACCCGTAAAAATTACAGATCTCCA 59.122 40.000 0.00 0.00 0.00 3.86
288 289 5.878669 ACACCCGTAAAAATTACAGATCTCC 59.121 40.000 0.00 0.00 0.00 3.71
289 290 6.980051 ACACCCGTAAAAATTACAGATCTC 57.020 37.500 0.00 0.00 0.00 2.75
290 291 8.098912 ACTTACACCCGTAAAAATTACAGATCT 58.901 33.333 0.00 0.00 37.16 2.75
291 292 8.173130 CACTTACACCCGTAAAAATTACAGATC 58.827 37.037 1.67 0.00 37.16 2.75
292 293 7.120138 CCACTTACACCCGTAAAAATTACAGAT 59.880 37.037 1.67 0.00 37.16 2.90
293 294 6.427547 CCACTTACACCCGTAAAAATTACAGA 59.572 38.462 1.67 0.00 37.16 3.41
294 295 6.427547 TCCACTTACACCCGTAAAAATTACAG 59.572 38.462 1.67 0.00 37.16 2.74
295 296 6.294473 TCCACTTACACCCGTAAAAATTACA 58.706 36.000 1.67 0.00 37.16 2.41
296 297 6.799926 TCCACTTACACCCGTAAAAATTAC 57.200 37.500 0.00 0.00 37.16 1.89
297 298 6.430616 CCTTCCACTTACACCCGTAAAAATTA 59.569 38.462 0.00 0.00 37.16 1.40
298 299 5.242171 CCTTCCACTTACACCCGTAAAAATT 59.758 40.000 0.00 0.00 37.16 1.82
299 300 4.763279 CCTTCCACTTACACCCGTAAAAAT 59.237 41.667 0.00 0.00 37.16 1.82
300 301 4.136051 CCTTCCACTTACACCCGTAAAAA 58.864 43.478 0.00 0.00 37.16 1.94
301 302 3.390639 TCCTTCCACTTACACCCGTAAAA 59.609 43.478 0.00 0.00 37.16 1.52
302 303 2.971330 TCCTTCCACTTACACCCGTAAA 59.029 45.455 0.00 0.00 37.16 2.01
303 304 2.607499 TCCTTCCACTTACACCCGTAA 58.393 47.619 0.00 0.00 36.20 3.18
304 305 2.307496 TCCTTCCACTTACACCCGTA 57.693 50.000 0.00 0.00 0.00 4.02
305 306 1.426751 TTCCTTCCACTTACACCCGT 58.573 50.000 0.00 0.00 0.00 5.28
306 307 2.551032 GTTTTCCTTCCACTTACACCCG 59.449 50.000 0.00 0.00 0.00 5.28
307 308 2.551032 CGTTTTCCTTCCACTTACACCC 59.449 50.000 0.00 0.00 0.00 4.61
308 309 3.469739 TCGTTTTCCTTCCACTTACACC 58.530 45.455 0.00 0.00 0.00 4.16
309 310 4.812626 TCTTCGTTTTCCTTCCACTTACAC 59.187 41.667 0.00 0.00 0.00 2.90
310 311 5.026038 TCTTCGTTTTCCTTCCACTTACA 57.974 39.130 0.00 0.00 0.00 2.41
311 312 5.121925 GGATCTTCGTTTTCCTTCCACTTAC 59.878 44.000 0.00 0.00 0.00 2.34
312 313 5.221762 TGGATCTTCGTTTTCCTTCCACTTA 60.222 40.000 0.00 0.00 0.00 2.24
313 314 4.072839 GGATCTTCGTTTTCCTTCCACTT 58.927 43.478 0.00 0.00 0.00 3.16
314 315 3.072476 TGGATCTTCGTTTTCCTTCCACT 59.928 43.478 0.00 0.00 0.00 4.00
315 316 3.408634 TGGATCTTCGTTTTCCTTCCAC 58.591 45.455 0.00 0.00 0.00 4.02
316 317 3.780804 TGGATCTTCGTTTTCCTTCCA 57.219 42.857 0.00 0.00 0.00 3.53
317 318 3.119814 GCTTGGATCTTCGTTTTCCTTCC 60.120 47.826 0.00 0.00 0.00 3.46
318 319 3.502211 TGCTTGGATCTTCGTTTTCCTTC 59.498 43.478 0.00 0.00 0.00 3.46
319 320 3.486383 TGCTTGGATCTTCGTTTTCCTT 58.514 40.909 0.00 0.00 0.00 3.36
320 321 3.077359 CTGCTTGGATCTTCGTTTTCCT 58.923 45.455 0.00 0.00 0.00 3.36
321 322 2.162408 CCTGCTTGGATCTTCGTTTTCC 59.838 50.000 0.00 0.00 38.35 3.13
322 323 2.162408 CCCTGCTTGGATCTTCGTTTTC 59.838 50.000 0.00 0.00 38.35 2.29
323 324 2.162681 CCCTGCTTGGATCTTCGTTTT 58.837 47.619 0.00 0.00 38.35 2.43
324 325 1.826385 CCCTGCTTGGATCTTCGTTT 58.174 50.000 0.00 0.00 38.35 3.60
325 326 0.678048 GCCCTGCTTGGATCTTCGTT 60.678 55.000 0.00 0.00 38.35 3.85
326 327 1.078143 GCCCTGCTTGGATCTTCGT 60.078 57.895 0.00 0.00 38.35 3.85
327 328 1.821332 GGCCCTGCTTGGATCTTCG 60.821 63.158 0.00 0.00 38.35 3.79
328 329 0.839946 TAGGCCCTGCTTGGATCTTC 59.160 55.000 0.00 0.00 38.35 2.87
329 330 1.213926 CTTAGGCCCTGCTTGGATCTT 59.786 52.381 0.00 0.00 38.35 2.40
330 331 0.842635 CTTAGGCCCTGCTTGGATCT 59.157 55.000 0.00 0.00 38.35 2.75
331 332 0.548510 ACTTAGGCCCTGCTTGGATC 59.451 55.000 0.00 0.00 38.35 3.36
332 333 0.257039 CACTTAGGCCCTGCTTGGAT 59.743 55.000 0.00 0.00 38.35 3.41
333 334 1.133809 ACACTTAGGCCCTGCTTGGA 61.134 55.000 0.00 0.00 38.35 3.53
334 335 0.962356 CACACTTAGGCCCTGCTTGG 60.962 60.000 0.00 0.00 0.00 3.61
335 336 0.036732 TCACACTTAGGCCCTGCTTG 59.963 55.000 0.00 0.00 0.00 4.01
336 337 0.995024 ATCACACTTAGGCCCTGCTT 59.005 50.000 0.00 0.00 0.00 3.91
337 338 1.486726 GTATCACACTTAGGCCCTGCT 59.513 52.381 0.00 0.00 0.00 4.24
338 339 1.475213 GGTATCACACTTAGGCCCTGC 60.475 57.143 0.00 0.00 0.00 4.85
339 340 1.202533 CGGTATCACACTTAGGCCCTG 60.203 57.143 0.00 0.00 0.00 4.45
340 341 1.120530 CGGTATCACACTTAGGCCCT 58.879 55.000 0.00 0.00 0.00 5.19
341 342 1.068741 CTCGGTATCACACTTAGGCCC 59.931 57.143 0.00 0.00 0.00 5.80
342 343 1.538419 GCTCGGTATCACACTTAGGCC 60.538 57.143 0.00 0.00 0.00 5.19
343 344 1.538419 GGCTCGGTATCACACTTAGGC 60.538 57.143 0.00 0.00 0.00 3.93
344 345 2.032620 AGGCTCGGTATCACACTTAGG 58.967 52.381 0.00 0.00 0.00 2.69
345 346 3.802948 AAGGCTCGGTATCACACTTAG 57.197 47.619 0.00 0.00 0.00 2.18
368 369 3.297134 ACCTGTCTTGAAAGCTTCCAA 57.703 42.857 0.00 0.00 0.00 3.53
369 370 3.214328 GAACCTGTCTTGAAAGCTTCCA 58.786 45.455 0.00 0.00 0.00 3.53
378 379 2.234300 GTTCCACGAACCTGTCTTGA 57.766 50.000 0.00 0.00 36.65 3.02
515 517 9.743057 AAAAGTCGACATGTATTTTGAAAATGA 57.257 25.926 19.50 0.57 0.00 2.57
569 571 9.330063 TCAACATGTATTTAAAAATGTTTGGCA 57.670 25.926 17.74 0.00 40.36 4.92
609 614 6.253942 CCGTGTGTATAAATGTGTTCGATGTA 59.746 38.462 0.00 0.00 0.00 2.29
614 619 4.386350 TCACCGTGTGTATAAATGTGTTCG 59.614 41.667 0.00 0.00 34.79 3.95
628 633 5.625721 TGCGTTTTAAAATATTCACCGTGTG 59.374 36.000 3.52 0.00 34.45 3.82
775 790 6.089283 CCATGAAATGTAAAATTGTCCACGTG 59.911 38.462 9.08 9.08 44.81 4.49
872 888 2.341846 AAACCAAGAGACGCCTTTGA 57.658 45.000 0.00 0.00 0.00 2.69
905 921 1.135402 GGTCATGTTGGCGGCTTTTAG 60.135 52.381 11.43 0.00 0.00 1.85
932 948 3.119955 CCGAGGGTTTAGCTAGCAAAAAC 60.120 47.826 25.86 25.86 33.37 2.43
994 1011 2.451294 GGAGGAGGCCATGGGGAT 60.451 66.667 15.13 0.00 35.59 3.85
1067 1087 1.985116 GGGGTGAGCTCCGAGAACT 60.985 63.158 12.15 0.00 0.00 3.01
1088 1108 4.715130 CCACCTCCGGGGACAGGA 62.715 72.222 13.64 0.00 38.76 3.86
1335 1355 3.502211 ACACGGGATTCTGTAAGCAAAAG 59.498 43.478 0.00 0.00 0.00 2.27
1358 1378 6.055231 TCTGTTAATCAAAACTGAACCACG 57.945 37.500 0.00 0.00 35.27 4.94
1361 1381 8.968242 GTTTCATCTGTTAATCAAAACTGAACC 58.032 33.333 1.33 0.00 39.68 3.62
1558 1586 1.679032 GGAGTGCCCACCAGTATGTTC 60.679 57.143 0.00 0.00 34.14 3.18
1579 1607 3.270027 CATTATGTCGAACAGCTTCCCA 58.730 45.455 0.00 0.00 0.00 4.37
1647 1675 3.286353 TCAAACACAGCTCCATTGTTCA 58.714 40.909 0.00 0.00 32.24 3.18
1802 1831 6.646240 TCAGCTTTGGCAACTTTGAAATAATC 59.354 34.615 0.00 0.00 41.70 1.75
1877 1906 0.323725 TCCTCAATCCTGCTTTGGCC 60.324 55.000 0.00 0.00 37.74 5.36
1889 1918 2.507471 GACCCTCACAGGATTCCTCAAT 59.493 50.000 0.98 0.00 37.67 2.57
1936 1965 1.736681 GACCAAGATCTTGCTGAGCAC 59.263 52.381 27.01 9.73 38.71 4.40
2104 2133 8.188799 ACAAGATTGATTTTCATATGCAGTCAG 58.811 33.333 0.00 0.00 0.00 3.51
2297 2326 0.606096 TGCATTCGAGGAAGACCGAA 59.394 50.000 0.00 0.00 46.72 4.30
2553 2582 4.817517 CAGAAAATGATGCCAGAGCTTTT 58.182 39.130 0.00 0.00 40.80 2.27
2664 2697 5.468658 AGAAGGGTAAGACCATAGCACTAT 58.531 41.667 0.00 0.00 41.02 2.12
2687 2720 6.384886 ACTTATATTTTGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2688 2721 5.191124 ACTTATATTTTGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2689 2722 5.681639 ACTTATATTTTGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2690 2723 5.427481 AGACTTATATTTTGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2691 2724 5.681639 AGACTTATATTTTGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2692 2725 7.625828 AAAGACTTATATTTTGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2709 2742 9.467796 CCCTTATTGGAATCTCTTAAAAGACTT 57.532 33.333 0.00 0.00 38.35 3.01
2710 2743 8.836735 TCCCTTATTGGAATCTCTTAAAAGACT 58.163 33.333 0.00 0.00 38.35 3.24
2711 2744 8.894731 GTCCCTTATTGGAATCTCTTAAAAGAC 58.105 37.037 0.00 0.00 35.80 3.01
2712 2745 8.836735 AGTCCCTTATTGGAATCTCTTAAAAGA 58.163 33.333 0.00 0.00 35.80 2.52
2714 2747 9.901172 GTAGTCCCTTATTGGAATCTCTTAAAA 57.099 33.333 0.00 0.00 35.80 1.52
2715 2748 9.053472 TGTAGTCCCTTATTGGAATCTCTTAAA 57.947 33.333 0.00 0.00 35.80 1.52
2716 2749 8.618240 TGTAGTCCCTTATTGGAATCTCTTAA 57.382 34.615 0.00 0.00 35.80 1.85
2717 2750 8.798975 ATGTAGTCCCTTATTGGAATCTCTTA 57.201 34.615 0.00 0.00 35.80 2.10
2718 2751 7.698163 ATGTAGTCCCTTATTGGAATCTCTT 57.302 36.000 0.00 0.00 35.80 2.85
2719 2752 7.039644 CGTATGTAGTCCCTTATTGGAATCTCT 60.040 40.741 0.00 0.00 35.80 3.10
2720 2753 7.091443 CGTATGTAGTCCCTTATTGGAATCTC 58.909 42.308 0.00 0.00 35.80 2.75
2721 2754 6.014499 CCGTATGTAGTCCCTTATTGGAATCT 60.014 42.308 0.00 0.00 35.80 2.40
2722 2755 6.014840 TCCGTATGTAGTCCCTTATTGGAATC 60.015 42.308 0.00 0.00 35.80 2.52
2723 2756 5.842328 TCCGTATGTAGTCCCTTATTGGAAT 59.158 40.000 0.00 0.00 35.80 3.01
2724 2757 5.210430 TCCGTATGTAGTCCCTTATTGGAA 58.790 41.667 0.00 0.00 35.80 3.53
2725 2758 4.806892 TCCGTATGTAGTCCCTTATTGGA 58.193 43.478 0.00 0.00 38.35 3.53
2726 2759 4.560919 GCTCCGTATGTAGTCCCTTATTGG 60.561 50.000 0.00 0.00 0.00 3.16
2727 2760 4.038763 TGCTCCGTATGTAGTCCCTTATTG 59.961 45.833 0.00 0.00 0.00 1.90
2728 2761 4.220724 TGCTCCGTATGTAGTCCCTTATT 58.779 43.478 0.00 0.00 0.00 1.40
2729 2762 3.840991 TGCTCCGTATGTAGTCCCTTAT 58.159 45.455 0.00 0.00 0.00 1.73
2730 2763 3.301794 TGCTCCGTATGTAGTCCCTTA 57.698 47.619 0.00 0.00 0.00 2.69
2731 2764 2.154567 TGCTCCGTATGTAGTCCCTT 57.845 50.000 0.00 0.00 0.00 3.95
2732 2765 2.154567 TTGCTCCGTATGTAGTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
2733 2766 2.973694 TTTGCTCCGTATGTAGTCCC 57.026 50.000 0.00 0.00 0.00 4.46
2734 2767 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2735 2768 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2736 2769 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2737 2770 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2738 2771 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2739 2772 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2740 2773 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
2741 2774 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
2742 2775 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
2743 2776 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
2744 2777 4.259970 CGTAGATTCACTCATTTTGCTCCG 60.260 45.833 0.00 0.00 0.00 4.63
2745 2778 4.631813 ACGTAGATTCACTCATTTTGCTCC 59.368 41.667 0.00 0.00 0.00 4.70
2746 2779 5.786401 ACGTAGATTCACTCATTTTGCTC 57.214 39.130 0.00 0.00 0.00 4.26
2747 2780 5.934625 AGAACGTAGATTCACTCATTTTGCT 59.065 36.000 0.00 0.00 0.00 3.91
2748 2781 6.170675 AGAACGTAGATTCACTCATTTTGC 57.829 37.500 0.00 0.00 0.00 3.68
2778 2811 9.597170 GAGACTACATACGGATGTATATAGACA 57.403 37.037 20.64 2.07 45.42 3.41
2779 2812 9.820725 AGAGACTACATACGGATGTATATAGAC 57.179 37.037 20.64 11.15 45.42 2.59
2784 2817 9.433153 CACTAAGAGACTACATACGGATGTATA 57.567 37.037 20.64 8.41 45.42 1.47
2785 2818 8.155510 TCACTAAGAGACTACATACGGATGTAT 58.844 37.037 20.64 11.04 45.42 2.29
2786 2819 7.503549 TCACTAAGAGACTACATACGGATGTA 58.496 38.462 19.32 19.32 44.77 2.29
2788 2821 6.862711 TCACTAAGAGACTACATACGGATG 57.137 41.667 5.94 5.94 39.16 3.51
2789 2822 7.876936 TTTCACTAAGAGACTACATACGGAT 57.123 36.000 0.00 0.00 0.00 4.18
2790 2823 7.774157 AGATTTCACTAAGAGACTACATACGGA 59.226 37.037 0.00 0.00 0.00 4.69
2791 2824 7.932335 AGATTTCACTAAGAGACTACATACGG 58.068 38.462 0.00 0.00 0.00 4.02
2792 2825 8.832521 AGAGATTTCACTAAGAGACTACATACG 58.167 37.037 0.00 0.00 0.00 3.06
2796 2829 9.961264 TTCTAGAGATTTCACTAAGAGACTACA 57.039 33.333 0.00 0.00 0.00 2.74
2799 2832 9.747898 TCTTTCTAGAGATTTCACTAAGAGACT 57.252 33.333 0.00 0.00 0.00 3.24
2800 2833 9.783256 GTCTTTCTAGAGATTTCACTAAGAGAC 57.217 37.037 0.00 0.00 0.00 3.36
2801 2834 9.747898 AGTCTTTCTAGAGATTTCACTAAGAGA 57.252 33.333 0.00 0.00 0.00 3.10
2819 2852 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2820 2853 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2821 2854 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2822 2855 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2823 2856 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2824 2857 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2825 2858 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2826 2859 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2827 2860 8.551682 TTTACTCCCTCCGTTCCTAAATATAA 57.448 34.615 0.00 0.00 0.00 0.98
2828 2861 8.731591 ATTTACTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
2829 2862 7.628501 ATTTACTCCCTCCGTTCCTAAATAT 57.371 36.000 0.00 0.00 0.00 1.28
2830 2863 7.441903 AATTTACTCCCTCCGTTCCTAAATA 57.558 36.000 0.00 0.00 0.00 1.40
2831 2864 5.970501 ATTTACTCCCTCCGTTCCTAAAT 57.029 39.130 0.00 0.00 0.00 1.40
2832 2865 5.767277 AATTTACTCCCTCCGTTCCTAAA 57.233 39.130 0.00 0.00 0.00 1.85
2833 2866 7.441903 AATAATTTACTCCCTCCGTTCCTAA 57.558 36.000 0.00 0.00 0.00 2.69
2834 2867 7.346436 AGAAATAATTTACTCCCTCCGTTCCTA 59.654 37.037 0.00 0.00 0.00 2.94
2835 2868 5.970501 AATAATTTACTCCCTCCGTTCCT 57.029 39.130 0.00 0.00 0.00 3.36
2836 2869 6.354938 AGAAATAATTTACTCCCTCCGTTCC 58.645 40.000 0.00 0.00 0.00 3.62
2837 2870 7.860918 AAGAAATAATTTACTCCCTCCGTTC 57.139 36.000 0.00 0.00 0.00 3.95
2838 2871 9.170734 GTAAAGAAATAATTTACTCCCTCCGTT 57.829 33.333 2.21 0.00 39.14 4.44
2839 2872 8.546322 AGTAAAGAAATAATTTACTCCCTCCGT 58.454 33.333 5.50 0.00 45.74 4.69
2840 2873 8.959705 AGTAAAGAAATAATTTACTCCCTCCG 57.040 34.615 5.50 0.00 45.74 4.63
2869 2902 8.028938 AGAATACACACTTTGCAATTGATTACC 58.971 33.333 10.34 0.00 0.00 2.85
2907 2941 1.123077 TGGGATCTTGAGGTGGATCG 58.877 55.000 0.00 0.00 39.19 3.69
3326 3371 3.423539 TCTGCAGCACAAAGGTAAGAT 57.576 42.857 9.47 0.00 0.00 2.40
3352 3397 1.339438 ACGATCTTCCAATGCAGCTGT 60.339 47.619 16.64 0.00 0.00 4.40
3405 3450 4.693566 TCCTTGTATGACCGAACAAATGAC 59.306 41.667 0.00 0.00 35.32 3.06
3613 3658 5.723295 ACAATGCAAATAATCCTGTGTTCC 58.277 37.500 0.00 0.00 0.00 3.62
3617 3662 6.198650 TGAGACAATGCAAATAATCCTGTG 57.801 37.500 0.00 0.00 0.00 3.66
3622 3667 6.127810 TCAGCTGAGACAATGCAAATAATC 57.872 37.500 13.74 0.00 0.00 1.75
3646 3691 7.740805 TGGGCTATTTGTTAAAAGAAAATGGT 58.259 30.769 0.00 0.00 0.00 3.55
3661 3706 8.514594 ACATATCGTCATTTAATGGGCTATTTG 58.485 33.333 0.08 0.00 0.00 2.32
3662 3707 8.514594 CACATATCGTCATTTAATGGGCTATTT 58.485 33.333 0.08 0.00 0.00 1.40
3665 3710 6.764379 TCACATATCGTCATTTAATGGGCTA 58.236 36.000 5.02 0.00 0.00 3.93
3668 3713 9.382275 TCATATCACATATCGTCATTTAATGGG 57.618 33.333 5.02 0.00 0.00 4.00
3680 3725 7.681903 CAACACATGGATCATATCACATATCG 58.318 38.462 0.00 0.00 0.00 2.92
3697 3742 8.914654 CAACATAATTACTCAAACCAACACATG 58.085 33.333 0.00 0.00 0.00 3.21
3698 3743 8.087750 CCAACATAATTACTCAAACCAACACAT 58.912 33.333 0.00 0.00 0.00 3.21
3723 3768 5.449304 GTTGTGCATGTTCTGTACTAAACC 58.551 41.667 0.00 0.00 40.74 3.27
3789 3835 9.979270 CTTATGACTCTTGACATCAAAACATAC 57.021 33.333 0.00 0.00 35.15 2.39
3811 3857 8.589338 CCCACTGCTGATACTAGATAAACTTAT 58.411 37.037 0.00 0.00 0.00 1.73
3863 3912 4.021229 TCTCGAGTTTTATCCCTGCAGTA 58.979 43.478 13.81 0.00 0.00 2.74
4026 4075 1.964552 CTCATCCATGTCCTCCTTGC 58.035 55.000 0.00 0.00 0.00 4.01
4099 4148 1.085091 TGAGCTTCTCGTACTCGTCC 58.915 55.000 0.00 0.00 38.33 4.79
4170 4219 0.323816 CCTCTCTTTCCCTTTGCCCC 60.324 60.000 0.00 0.00 0.00 5.80
4183 4232 2.999648 TCCTTGCTGCGCCTCTCT 61.000 61.111 4.18 0.00 0.00 3.10
4292 4341 7.387397 GGCAAAATTTCATCCAAAGATACACAA 59.613 33.333 0.00 0.00 0.00 3.33
4307 4356 5.897050 ACGAACTAAACTGGCAAAATTTCA 58.103 33.333 0.00 0.00 0.00 2.69
4440 4491 6.969366 AGATTTCATTTTCGTGTGAACATGA 58.031 32.000 0.00 1.16 45.08 3.07
4441 4492 7.358600 CCAAGATTTCATTTTCGTGTGAACATG 60.359 37.037 0.00 0.00 41.52 3.21
4442 4493 6.642131 CCAAGATTTCATTTTCGTGTGAACAT 59.358 34.615 0.00 0.00 34.34 2.71
4443 4494 5.976534 CCAAGATTTCATTTTCGTGTGAACA 59.023 36.000 0.00 0.00 34.34 3.18
4444 4495 5.107875 GCCAAGATTTCATTTTCGTGTGAAC 60.108 40.000 0.00 0.00 34.34 3.18
4445 4496 4.981674 GCCAAGATTTCATTTTCGTGTGAA 59.018 37.500 0.00 0.00 32.86 3.18
4446 4497 4.545610 GCCAAGATTTCATTTTCGTGTGA 58.454 39.130 0.00 0.00 0.00 3.58
4447 4498 3.361644 CGCCAAGATTTCATTTTCGTGTG 59.638 43.478 0.00 0.00 0.00 3.82
4448 4499 3.564511 CGCCAAGATTTCATTTTCGTGT 58.435 40.909 0.00 0.00 0.00 4.49
4449 4500 2.342354 GCGCCAAGATTTCATTTTCGTG 59.658 45.455 0.00 0.00 0.00 4.35
4450 4501 2.595386 GCGCCAAGATTTCATTTTCGT 58.405 42.857 0.00 0.00 0.00 3.85
4451 4502 1.578915 CGCGCCAAGATTTCATTTTCG 59.421 47.619 0.00 0.00 0.00 3.46
4452 4503 1.919918 CCGCGCCAAGATTTCATTTTC 59.080 47.619 0.00 0.00 0.00 2.29
4453 4504 1.994916 CCGCGCCAAGATTTCATTTT 58.005 45.000 0.00 0.00 0.00 1.82
4454 4505 0.458370 GCCGCGCCAAGATTTCATTT 60.458 50.000 0.00 0.00 0.00 2.32
4501 4552 4.895889 CCCTCCCATTCCCTTCTATTTTTC 59.104 45.833 0.00 0.00 0.00 2.29
4534 4619 2.877168 CCTGCTCTGTTATGATTGCTCC 59.123 50.000 0.00 0.00 0.00 4.70
4551 4636 4.556302 GCTTTTGCTATAGCTTCATCCTGC 60.556 45.833 24.61 13.64 43.35 4.85
4594 4680 9.616156 TGAGAAACTTGGTGTGTTTTATACTTA 57.384 29.630 0.00 0.00 37.70 2.24
4609 4695 5.218139 GTGCTTTCTTCATGAGAAACTTGG 58.782 41.667 13.14 7.64 46.69 3.61
4610 4696 4.908156 CGTGCTTTCTTCATGAGAAACTTG 59.092 41.667 13.14 7.89 46.69 3.16
4611 4697 4.023707 CCGTGCTTTCTTCATGAGAAACTT 60.024 41.667 13.14 0.00 46.69 2.66
4612 4698 3.499918 CCGTGCTTTCTTCATGAGAAACT 59.500 43.478 13.14 0.00 46.69 2.66
4613 4699 3.365364 CCCGTGCTTTCTTCATGAGAAAC 60.365 47.826 13.14 11.36 46.69 2.78
4615 4701 2.038426 TCCCGTGCTTTCTTCATGAGAA 59.962 45.455 0.00 0.00 42.56 2.87
4617 4703 2.005451 CTCCCGTGCTTTCTTCATGAG 58.995 52.381 0.00 0.00 0.00 2.90
4618 4704 1.623311 TCTCCCGTGCTTTCTTCATGA 59.377 47.619 0.00 0.00 0.00 3.07
4619 4705 2.099141 TCTCCCGTGCTTTCTTCATG 57.901 50.000 0.00 0.00 0.00 3.07
4620 4706 2.704572 CTTCTCCCGTGCTTTCTTCAT 58.295 47.619 0.00 0.00 0.00 2.57
4624 4722 0.398318 AAGCTTCTCCCGTGCTTTCT 59.602 50.000 0.00 0.00 43.47 2.52
4766 4864 3.762407 ATATGTGGCAGCACGGTAATA 57.238 42.857 0.00 0.00 0.00 0.98
4768 4866 2.285083 GAATATGTGGCAGCACGGTAA 58.715 47.619 0.00 0.00 0.00 2.85
4861 4966 3.542712 TTGTTTCATCTGCGCTTCTTC 57.457 42.857 9.73 0.00 0.00 2.87
4865 4970 1.270274 TGCATTGTTTCATCTGCGCTT 59.730 42.857 9.73 0.00 37.44 4.68
4868 4973 2.095110 TCCTTGCATTGTTTCATCTGCG 60.095 45.455 0.00 0.00 37.44 5.18
4880 4985 2.235402 CCCAAGCATTTCTCCTTGCATT 59.765 45.455 0.00 0.00 41.35 3.56
4897 5002 4.134785 TATGCCATGGCCGCCCAA 62.135 61.111 33.44 14.74 46.14 4.12
4915 5020 4.576053 TCTCATGGTATTTTCTGATTGGCG 59.424 41.667 0.00 0.00 0.00 5.69
4916 5021 6.645790 ATCTCATGGTATTTTCTGATTGGC 57.354 37.500 0.00 0.00 0.00 4.52
4917 5022 8.242053 GCATATCTCATGGTATTTTCTGATTGG 58.758 37.037 0.00 0.00 0.00 3.16
4925 5030 7.750229 AACATCGCATATCTCATGGTATTTT 57.250 32.000 0.00 0.00 0.00 1.82
4948 5053 5.874810 CAGTGCCAGCTACTTTACTCAATAA 59.125 40.000 0.00 0.00 0.00 1.40
4967 5072 3.803778 GCCACATATTTATTTGCCAGTGC 59.196 43.478 0.00 0.00 38.26 4.40
4971 5076 3.027412 ACCGCCACATATTTATTTGCCA 58.973 40.909 0.00 0.00 0.00 4.92
4972 5077 3.380142 CACCGCCACATATTTATTTGCC 58.620 45.455 0.00 0.00 0.00 4.52
4978 5083 1.808512 CGAGCCACCGCCACATATTTA 60.809 52.381 0.00 0.00 34.57 1.40
4986 5091 2.745884 CATTTCGAGCCACCGCCA 60.746 61.111 0.00 0.00 34.57 5.69
4992 5097 1.745232 ATTTACCGCATTTCGAGCCA 58.255 45.000 0.00 0.00 41.67 4.75
4993 5098 2.096819 TGAATTTACCGCATTTCGAGCC 59.903 45.455 0.00 0.00 41.67 4.70
5006 5111 3.440522 GTCTGGTTCCAGCCTGAATTTAC 59.559 47.826 13.44 0.75 38.04 2.01
5015 5120 1.541588 GAATTGTGTCTGGTTCCAGCC 59.458 52.381 13.44 3.47 34.33 4.85
5024 5129 2.224867 ACTTCCCCCTGAATTGTGTCTG 60.225 50.000 0.00 0.00 31.06 3.51
5025 5130 2.065799 ACTTCCCCCTGAATTGTGTCT 58.934 47.619 0.00 0.00 31.06 3.41
5041 5146 1.200020 CCTGTCGGCATTTCCAACTTC 59.800 52.381 0.00 0.00 34.01 3.01
5065 5170 5.449588 GCCATCAGTTCATCAAATAGGTGTG 60.450 44.000 0.00 0.00 0.00 3.82
5088 5193 7.168637 CCATGTTAACATTATGCAATTCTGAGC 59.831 37.037 18.50 0.00 33.61 4.26
5147 5253 9.914834 TCCCATTTTACAGCATAGTTAAATAGT 57.085 29.630 0.00 0.00 31.30 2.12
5153 5260 6.001449 AGCTCCCATTTTACAGCATAGTTA 57.999 37.500 0.00 0.00 34.08 2.24
5163 5270 3.375299 CAGCACTGTAGCTCCCATTTTAC 59.625 47.826 0.00 0.00 44.54 2.01
5170 5277 1.807142 GAAAACAGCACTGTAGCTCCC 59.193 52.381 3.26 0.00 44.54 4.30
5230 5337 3.002791 TGCATCACGATTTTCCAGAGTC 58.997 45.455 0.00 0.00 0.00 3.36
5256 5363 7.043986 CGAGTTTCGTACCAGATTAAGATCAAG 60.044 40.741 0.00 0.00 34.72 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.