Multiple sequence alignment - TraesCS3D01G100600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G100600 chr3D 100.000 3557 0 0 618 4174 53380691 53384247 0.000000e+00 6569.0
1 TraesCS3D01G100600 chr3D 100.000 209 0 0 1 209 53380074 53380282 2.030000e-103 387.0
2 TraesCS3D01G100600 chr3D 94.000 250 14 1 618 866 126221303 126221552 1.220000e-100 377.0
3 TraesCS3D01G100600 chr3D 93.952 248 14 1 618 864 501043203 501042956 1.580000e-99 374.0
4 TraesCS3D01G100600 chr3D 94.737 209 11 0 1 209 471822313 471822105 4.500000e-85 326.0
5 TraesCS3D01G100600 chr3D 100.000 123 0 0 4539 4661 53384612 53384734 1.300000e-55 228.0
6 TraesCS3D01G100600 chr3D 100.000 34 0 0 3844 3877 504344235 504344268 3.890000e-06 63.9
7 TraesCS3D01G100600 chr3B 95.046 2483 108 12 1499 3977 83828275 83830746 0.000000e+00 3890.0
8 TraesCS3D01G100600 chr3B 96.594 411 14 0 864 1274 83827785 83828195 0.000000e+00 682.0
9 TraesCS3D01G100600 chr3B 92.188 256 18 2 618 871 766959488 766959233 1.230000e-95 361.0
10 TraesCS3D01G100600 chr3B 94.737 209 11 0 1 209 766959745 766959537 4.500000e-85 326.0
11 TraesCS3D01G100600 chr3B 94.258 209 12 0 1 209 437508719 437508511 2.090000e-83 320.0
12 TraesCS3D01G100600 chr3B 100.000 34 0 0 3844 3877 703602467 703602434 3.890000e-06 63.9
13 TraesCS3D01G100600 chr3A 93.159 2675 136 15 1499 4165 64729803 64732438 0.000000e+00 3882.0
14 TraesCS3D01G100600 chr3A 93.353 331 16 4 864 1188 64728999 64729329 7.010000e-133 484.0
15 TraesCS3D01G100600 chr5A 93.952 248 14 1 618 864 480197476 480197723 1.580000e-99 374.0
16 TraesCS3D01G100600 chr5A 85.393 89 10 3 1290 1375 285846698 285846610 6.420000e-14 89.8
17 TraesCS3D01G100600 chr2D 93.952 248 14 1 618 864 59148937 59149184 1.580000e-99 374.0
18 TraesCS3D01G100600 chr2D 95.694 209 9 0 1 209 569112236 569112444 2.080000e-88 337.0
19 TraesCS3D01G100600 chr2D 92.754 69 5 0 1290 1358 30457960 30458028 2.970000e-17 100.0
20 TraesCS3D01G100600 chr2D 94.030 67 3 1 1290 1355 645267871 645267805 2.970000e-17 100.0
21 TraesCS3D01G100600 chr1D 93.625 251 15 1 618 867 319613968 319613718 1.580000e-99 374.0
22 TraesCS3D01G100600 chr1D 93.780 209 13 0 1 209 398483478 398483686 9.740000e-82 315.0
23 TraesCS3D01G100600 chr5B 93.600 250 15 1 622 870 537779732 537779483 5.700000e-99 372.0
24 TraesCS3D01G100600 chr5B 96.774 62 2 0 1290 1351 263943306 263943245 2.290000e-18 104.0
25 TraesCS3D01G100600 chr5B 86.905 84 8 3 1290 1370 684240850 684240933 1.790000e-14 91.6
26 TraesCS3D01G100600 chr5B 86.250 80 11 0 4580 4659 536660978 536661057 2.310000e-13 87.9
27 TraesCS3D01G100600 chr5B 94.737 38 1 1 3844 3881 43125508 43125472 1.810000e-04 58.4
28 TraesCS3D01G100600 chr1B 92.941 255 15 2 618 869 28046901 28046647 7.370000e-98 368.0
29 TraesCS3D01G100600 chr1B 96.774 62 2 0 1290 1351 352885014 352884953 2.290000e-18 104.0
30 TraesCS3D01G100600 chr1B 97.368 38 0 1 3844 3881 203949949 203949913 3.890000e-06 63.9
31 TraesCS3D01G100600 chr7D 93.145 248 16 1 618 864 97624608 97624361 3.430000e-96 363.0
32 TraesCS3D01G100600 chr7D 94.258 209 11 1 1 209 48527873 48527666 7.530000e-83 318.0
33 TraesCS3D01G100600 chr7D 94.258 209 11 1 1 209 626477770 626477563 7.530000e-83 318.0
34 TraesCS3D01G100600 chr6D 94.258 209 12 0 1 209 386188646 386188854 2.090000e-83 320.0
35 TraesCS3D01G100600 chr4D 93.780 209 13 0 1 209 465072050 465071842 9.740000e-82 315.0
36 TraesCS3D01G100600 chr4D 92.754 69 5 0 1290 1358 112194148 112194216 2.970000e-17 100.0
37 TraesCS3D01G100600 chr4B 94.030 67 3 1 1290 1355 631841876 631841942 2.970000e-17 100.0
38 TraesCS3D01G100600 chr6B 92.647 68 5 0 1290 1357 115045706 115045773 1.070000e-16 99.0
39 TraesCS3D01G100600 chr1A 85.075 67 9 1 4594 4660 531874003 531874068 3.010000e-07 67.6
40 TraesCS3D01G100600 chr5D 97.368 38 0 1 3844 3881 114405563 114405527 3.890000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G100600 chr3D 53380074 53384734 4660 False 2394.666667 6569 100.0000 1 4661 3 chr3D.!!$F3 4660
1 TraesCS3D01G100600 chr3B 83827785 83830746 2961 False 2286.000000 3890 95.8200 864 3977 2 chr3B.!!$F1 3113
2 TraesCS3D01G100600 chr3B 766959233 766959745 512 True 343.500000 361 93.4625 1 871 2 chr3B.!!$R3 870
3 TraesCS3D01G100600 chr3A 64728999 64732438 3439 False 2183.000000 3882 93.2560 864 4165 2 chr3A.!!$F1 3301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 850 0.031585 GGTCAAGTTTTTGCGGGGTC 59.968 55.0 0.0 0.0 34.21 4.46 F
1286 1614 0.033796 TCCATTCGTACTCCCTCCGT 60.034 55.0 0.0 0.0 0.00 4.69 F
1289 1617 0.033796 ATTCGTACTCCCTCCGTCCA 60.034 55.0 0.0 0.0 0.00 4.02 F
1297 1625 0.180878 TCCCTCCGTCCAACGTTTTT 59.819 50.0 0.0 0.0 40.58 1.94 F
1298 1626 0.309612 CCCTCCGTCCAACGTTTTTG 59.690 55.0 0.0 0.0 40.58 2.44 F
3397 3731 0.322816 TTCCATCCAGCAGAACCAGC 60.323 55.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1964 2292 0.704076 ACTAAGGGCCCTGATTGCAA 59.296 50.000 29.50 0.0 0.00 4.08 R
3016 3350 0.668706 CGTCTCCAGTTGCCTGAGTG 60.669 60.000 0.00 0.0 41.50 3.51 R
3043 3377 1.068127 GATTGGAAGGATGCACCATGC 59.932 52.381 7.86 0.0 45.29 4.06 R
3421 3755 1.102154 CCATTTTACCGCCTGCATCA 58.898 50.000 0.00 0.0 0.00 3.07 R
3436 3770 6.368791 CGACAATGACCGTAATATCATCCATT 59.631 38.462 0.00 0.0 34.41 3.16 R
4621 4958 0.171903 CATGCTTCCCTTTCTTGCCG 59.828 55.000 0.00 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 4.489771 CTGGCCGCCGGAATCCTT 62.490 66.667 13.55 0.00 29.82 3.36
84 85 4.974721 CACGGCAGGCAAAGGGGT 62.975 66.667 0.00 0.00 0.00 4.95
112 113 3.491208 CTGGCAATAGAGCAAGGCT 57.509 52.632 0.00 0.00 43.88 4.58
728 729 1.305381 CCGGACTGGAGGAAGGAGT 60.305 63.158 0.00 0.00 42.00 3.85
818 819 3.663233 CGCGATCTTCGTAAAACTGCAAA 60.663 43.478 0.00 0.00 42.81 3.68
819 820 3.598246 GCGATCTTCGTAAAACTGCAAAC 59.402 43.478 0.00 0.00 42.81 2.93
820 821 3.833061 CGATCTTCGTAAAACTGCAAACG 59.167 43.478 0.00 0.00 34.72 3.60
821 822 2.976729 TCTTCGTAAAACTGCAAACGC 58.023 42.857 0.00 0.00 35.40 4.84
822 823 1.701431 CTTCGTAAAACTGCAAACGCG 59.299 47.619 3.53 3.53 35.40 6.01
823 824 0.651551 TCGTAAAACTGCAAACGCGT 59.348 45.000 5.58 5.58 35.40 6.01
824 825 1.062294 TCGTAAAACTGCAAACGCGTT 59.938 42.857 20.79 20.79 35.40 4.84
825 826 1.841342 CGTAAAACTGCAAACGCGTTT 59.159 42.857 30.36 30.36 37.56 3.60
826 827 2.276798 CGTAAAACTGCAAACGCGTTTT 59.723 40.909 33.05 19.60 42.73 2.43
827 828 2.778526 AAAACTGCAAACGCGTTTTG 57.221 40.000 33.05 26.38 46.57 2.44
837 838 2.719354 GCGTTTTGCGGGTCAAGT 59.281 55.556 0.00 0.00 41.69 3.16
838 839 1.065109 GCGTTTTGCGGGTCAAGTT 59.935 52.632 0.00 0.00 41.69 2.66
839 840 0.526739 GCGTTTTGCGGGTCAAGTTT 60.527 50.000 0.00 0.00 41.69 2.66
840 841 1.915952 CGTTTTGCGGGTCAAGTTTT 58.084 45.000 0.00 0.00 35.84 2.43
841 842 2.263945 CGTTTTGCGGGTCAAGTTTTT 58.736 42.857 0.00 0.00 35.84 1.94
842 843 2.028643 CGTTTTGCGGGTCAAGTTTTTG 59.971 45.455 0.00 0.00 35.84 2.44
843 844 1.646189 TTTGCGGGTCAAGTTTTTGC 58.354 45.000 0.00 0.00 35.84 3.68
844 845 0.526524 TTGCGGGTCAAGTTTTTGCG 60.527 50.000 0.00 0.00 34.21 4.85
845 846 1.660264 GCGGGTCAAGTTTTTGCGG 60.660 57.895 0.00 0.00 34.21 5.69
846 847 1.007849 CGGGTCAAGTTTTTGCGGG 60.008 57.895 0.00 0.00 34.21 6.13
847 848 1.365999 GGGTCAAGTTTTTGCGGGG 59.634 57.895 0.00 0.00 34.21 5.73
848 849 1.396607 GGGTCAAGTTTTTGCGGGGT 61.397 55.000 0.00 0.00 34.21 4.95
849 850 0.031585 GGTCAAGTTTTTGCGGGGTC 59.968 55.000 0.00 0.00 34.21 4.46
850 851 1.029681 GTCAAGTTTTTGCGGGGTCT 58.970 50.000 0.00 0.00 34.21 3.85
851 852 1.028905 TCAAGTTTTTGCGGGGTCTG 58.971 50.000 0.00 0.00 34.21 3.51
852 853 0.597377 CAAGTTTTTGCGGGGTCTGC 60.597 55.000 0.00 0.00 0.00 4.26
853 854 1.040339 AAGTTTTTGCGGGGTCTGCA 61.040 50.000 0.00 0.00 41.38 4.41
858 859 2.194597 TGCGGGGTCTGCAAAGTT 59.805 55.556 0.00 0.00 39.87 2.66
859 860 2.192861 TGCGGGGTCTGCAAAGTTG 61.193 57.895 0.00 0.00 39.87 3.16
913 914 2.965805 CCATGTTGATGTGGCCTGT 58.034 52.632 3.32 0.00 0.00 4.00
926 927 1.519719 GCCTGTCTGCCTCCACTAG 59.480 63.158 0.00 0.00 0.00 2.57
1112 1113 0.037605 GCCGCCAAGTATATACGCCT 60.038 55.000 7.23 0.00 0.00 5.52
1171 1178 0.393808 TCCCAAATGTTAGGCTCCGC 60.394 55.000 0.00 0.00 0.00 5.54
1184 1191 3.323286 TCCGCCCGGTTCATGGAA 61.323 61.111 6.61 0.00 36.47 3.53
1204 1211 9.754382 CATGGAACCTGGAATAAGATAATTTTG 57.246 33.333 0.00 0.00 0.00 2.44
1237 1565 5.131067 TGGTAGTACATAGGCTAGTGACTG 58.869 45.833 12.70 3.54 31.35 3.51
1260 1588 5.538813 TGGCGAGTAATGATTATACTGGTCT 59.461 40.000 0.00 0.00 35.52 3.85
1284 1612 3.622166 TTTTCCATTCGTACTCCCTCC 57.378 47.619 0.00 0.00 0.00 4.30
1285 1613 1.108776 TTCCATTCGTACTCCCTCCG 58.891 55.000 0.00 0.00 0.00 4.63
1286 1614 0.033796 TCCATTCGTACTCCCTCCGT 60.034 55.000 0.00 0.00 0.00 4.69
1287 1615 0.384669 CCATTCGTACTCCCTCCGTC 59.615 60.000 0.00 0.00 0.00 4.79
1288 1616 0.384669 CATTCGTACTCCCTCCGTCC 59.615 60.000 0.00 0.00 0.00 4.79
1289 1617 0.033796 ATTCGTACTCCCTCCGTCCA 60.034 55.000 0.00 0.00 0.00 4.02
1290 1618 0.251297 TTCGTACTCCCTCCGTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
1291 1619 0.962356 TCGTACTCCCTCCGTCCAAC 60.962 60.000 0.00 0.00 0.00 3.77
1292 1620 1.509923 GTACTCCCTCCGTCCAACG 59.490 63.158 0.00 0.00 42.11 4.10
1293 1621 1.075482 TACTCCCTCCGTCCAACGT 59.925 57.895 0.00 0.00 40.58 3.99
1294 1622 0.540365 TACTCCCTCCGTCCAACGTT 60.540 55.000 0.00 0.00 40.58 3.99
1295 1623 1.370064 CTCCCTCCGTCCAACGTTT 59.630 57.895 0.00 0.00 40.58 3.60
1296 1624 0.250166 CTCCCTCCGTCCAACGTTTT 60.250 55.000 0.00 0.00 40.58 2.43
1297 1625 0.180878 TCCCTCCGTCCAACGTTTTT 59.819 50.000 0.00 0.00 40.58 1.94
1298 1626 0.309612 CCCTCCGTCCAACGTTTTTG 59.690 55.000 0.00 0.00 40.58 2.44
1299 1627 1.301423 CCTCCGTCCAACGTTTTTGA 58.699 50.000 0.00 0.00 40.58 2.69
1300 1628 1.003223 CCTCCGTCCAACGTTTTTGAC 60.003 52.381 0.00 5.19 40.58 3.18
1301 1629 1.666700 CTCCGTCCAACGTTTTTGACA 59.333 47.619 17.56 3.88 40.58 3.58
1302 1630 1.397692 TCCGTCCAACGTTTTTGACAC 59.602 47.619 17.56 2.04 40.58 3.67
1303 1631 1.399089 CCGTCCAACGTTTTTGACACT 59.601 47.619 17.56 0.00 40.58 3.55
1304 1632 2.608546 CCGTCCAACGTTTTTGACACTA 59.391 45.455 17.56 0.00 40.58 2.74
1305 1633 3.302870 CCGTCCAACGTTTTTGACACTAG 60.303 47.826 17.56 0.00 40.58 2.57
1306 1634 3.307782 CGTCCAACGTTTTTGACACTAGT 59.692 43.478 17.56 0.00 36.74 2.57
1307 1635 4.503734 CGTCCAACGTTTTTGACACTAGTA 59.496 41.667 17.56 0.00 36.74 1.82
1308 1636 5.176223 CGTCCAACGTTTTTGACACTAGTAT 59.824 40.000 17.56 0.00 36.74 2.12
1309 1637 6.363088 CGTCCAACGTTTTTGACACTAGTATA 59.637 38.462 17.56 0.00 36.74 1.47
1310 1638 7.096106 CGTCCAACGTTTTTGACACTAGTATAA 60.096 37.037 17.56 0.00 36.74 0.98
1311 1639 8.715088 GTCCAACGTTTTTGACACTAGTATAAT 58.285 33.333 14.32 0.00 29.55 1.28
1312 1640 8.714179 TCCAACGTTTTTGACACTAGTATAATG 58.286 33.333 0.00 0.00 0.00 1.90
1313 1641 8.500773 CCAACGTTTTTGACACTAGTATAATGT 58.499 33.333 0.00 0.00 0.00 2.71
1314 1642 9.872757 CAACGTTTTTGACACTAGTATAATGTT 57.127 29.630 0.00 0.00 0.00 2.71
1343 1671 8.581253 AAAGTTCTTATATTTTGGGACAGAGG 57.419 34.615 0.00 0.00 42.39 3.69
1344 1672 6.663734 AGTTCTTATATTTTGGGACAGAGGG 58.336 40.000 0.00 0.00 42.39 4.30
1345 1673 6.447084 AGTTCTTATATTTTGGGACAGAGGGA 59.553 38.462 0.00 0.00 42.39 4.20
1346 1674 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
1347 1675 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
1357 1685 7.758820 TGGGACAGAGGGAGTATTAATTAAA 57.241 36.000 1.21 0.00 0.00 1.52
1417 1745 8.378172 TCTGTTTAACTTGAAGATAGTGTTGG 57.622 34.615 0.00 0.00 0.00 3.77
1418 1746 6.966021 TGTTTAACTTGAAGATAGTGTTGGC 58.034 36.000 0.00 0.00 0.00 4.52
1419 1747 6.016610 TGTTTAACTTGAAGATAGTGTTGGCC 60.017 38.462 0.00 0.00 0.00 5.36
1422 1750 4.012374 ACTTGAAGATAGTGTTGGCCATG 58.988 43.478 6.09 0.00 0.00 3.66
1423 1751 3.719268 TGAAGATAGTGTTGGCCATGT 57.281 42.857 6.09 0.00 0.00 3.21
1424 1752 3.346315 TGAAGATAGTGTTGGCCATGTG 58.654 45.455 6.09 0.00 0.00 3.21
1425 1753 3.244875 TGAAGATAGTGTTGGCCATGTGT 60.245 43.478 6.09 0.00 0.00 3.72
1426 1754 3.439857 AGATAGTGTTGGCCATGTGTT 57.560 42.857 6.09 0.00 0.00 3.32
1427 1755 3.347216 AGATAGTGTTGGCCATGTGTTC 58.653 45.455 6.09 0.00 0.00 3.18
1428 1756 2.949177 TAGTGTTGGCCATGTGTTCT 57.051 45.000 6.09 2.45 0.00 3.01
1429 1757 2.949177 AGTGTTGGCCATGTGTTCTA 57.051 45.000 6.09 0.00 0.00 2.10
1430 1758 2.504367 AGTGTTGGCCATGTGTTCTAC 58.496 47.619 6.09 0.00 0.00 2.59
1431 1759 2.106511 AGTGTTGGCCATGTGTTCTACT 59.893 45.455 6.09 0.00 0.00 2.57
1432 1760 2.484264 GTGTTGGCCATGTGTTCTACTC 59.516 50.000 6.09 0.00 0.00 2.59
1433 1761 2.084546 GTTGGCCATGTGTTCTACTCC 58.915 52.381 6.09 0.00 0.00 3.85
1434 1762 0.618458 TGGCCATGTGTTCTACTCCC 59.382 55.000 0.00 0.00 0.00 4.30
1435 1763 0.912486 GGCCATGTGTTCTACTCCCT 59.088 55.000 0.00 0.00 0.00 4.20
1436 1764 1.282157 GGCCATGTGTTCTACTCCCTT 59.718 52.381 0.00 0.00 0.00 3.95
1437 1765 2.504175 GGCCATGTGTTCTACTCCCTTA 59.496 50.000 0.00 0.00 0.00 2.69
1438 1766 3.054655 GGCCATGTGTTCTACTCCCTTAA 60.055 47.826 0.00 0.00 0.00 1.85
1439 1767 4.385310 GGCCATGTGTTCTACTCCCTTAAT 60.385 45.833 0.00 0.00 0.00 1.40
1440 1768 5.163237 GGCCATGTGTTCTACTCCCTTAATA 60.163 44.000 0.00 0.00 0.00 0.98
1441 1769 6.354130 GCCATGTGTTCTACTCCCTTAATAA 58.646 40.000 0.00 0.00 0.00 1.40
1442 1770 6.826741 GCCATGTGTTCTACTCCCTTAATAAA 59.173 38.462 0.00 0.00 0.00 1.40
1443 1771 7.201705 GCCATGTGTTCTACTCCCTTAATAAAC 60.202 40.741 0.00 0.00 0.00 2.01
1444 1772 7.827236 CCATGTGTTCTACTCCCTTAATAAACA 59.173 37.037 0.00 0.00 0.00 2.83
1445 1773 9.226606 CATGTGTTCTACTCCCTTAATAAACAA 57.773 33.333 0.00 0.00 0.00 2.83
1446 1774 9.802039 ATGTGTTCTACTCCCTTAATAAACAAA 57.198 29.630 0.00 0.00 0.00 2.83
1447 1775 9.802039 TGTGTTCTACTCCCTTAATAAACAAAT 57.198 29.630 0.00 0.00 0.00 2.32
1457 1785 9.841295 TCCCTTAATAAACAAATATAAGAGCGT 57.159 29.630 0.00 0.00 0.00 5.07
1468 1796 9.378551 ACAAATATAAGAGCGTTGATCTAAACA 57.621 29.630 0.00 0.00 0.00 2.83
1469 1797 9.638300 CAAATATAAGAGCGTTGATCTAAACAC 57.362 33.333 0.00 0.00 0.00 3.32
1470 1798 9.601217 AAATATAAGAGCGTTGATCTAAACACT 57.399 29.630 0.00 0.00 0.00 3.55
1471 1799 9.601217 AATATAAGAGCGTTGATCTAAACACTT 57.399 29.630 0.00 0.00 0.00 3.16
1475 1803 7.988904 AGAGCGTTGATCTAAACACTTATAC 57.011 36.000 0.00 0.00 0.00 1.47
1476 1804 6.691818 AGAGCGTTGATCTAAACACTTATACG 59.308 38.462 0.00 0.00 0.00 3.06
1477 1805 6.327934 AGCGTTGATCTAAACACTTATACGT 58.672 36.000 0.00 0.00 0.00 3.57
1478 1806 7.475015 AGCGTTGATCTAAACACTTATACGTA 58.525 34.615 0.00 0.00 0.00 3.57
1479 1807 8.133627 AGCGTTGATCTAAACACTTATACGTAT 58.866 33.333 13.54 13.54 0.00 3.06
1480 1808 8.749499 GCGTTGATCTAAACACTTATACGTATT 58.251 33.333 14.33 0.00 0.00 1.89
1496 1824 4.382345 CGTATTTCTTTACGGAGGGAGT 57.618 45.455 0.00 0.00 40.90 3.85
1497 1825 5.505173 CGTATTTCTTTACGGAGGGAGTA 57.495 43.478 0.00 0.00 40.90 2.59
1556 1884 3.304057 GCGAAACTAAGTTGCTTGCTCTT 60.304 43.478 0.00 2.23 0.00 2.85
1558 1886 4.260784 CGAAACTAAGTTGCTTGCTCTTGT 60.261 41.667 11.37 6.92 0.00 3.16
1572 1900 2.161609 GCTCTTGTTTAATGGTGGACCG 59.838 50.000 0.00 0.00 39.43 4.79
1574 1902 4.069304 CTCTTGTTTAATGGTGGACCGAA 58.931 43.478 0.00 0.00 39.43 4.30
1591 1919 3.077359 CCGAAAGTTGGATCTGCTTCTT 58.923 45.455 0.00 0.00 0.00 2.52
1612 1940 8.420374 TTCTTAAGTGCTAATTATGGTTCTCG 57.580 34.615 1.63 0.00 0.00 4.04
1614 1942 8.421784 TCTTAAGTGCTAATTATGGTTCTCGAT 58.578 33.333 1.63 0.00 0.00 3.59
1711 2039 2.274542 ACTCATGTAATCCCACACCCA 58.725 47.619 0.00 0.00 0.00 4.51
1724 2052 2.582052 CACACCCAAGAAAGGTTAGCA 58.418 47.619 0.00 0.00 34.56 3.49
1725 2053 2.955660 CACACCCAAGAAAGGTTAGCAA 59.044 45.455 0.00 0.00 34.56 3.91
1764 2092 8.747471 TCAGTTGTTTGCAAATCATATATTGGA 58.253 29.630 16.21 1.09 36.22 3.53
1813 2141 5.648330 AGACCTGAAGTTCCCTACTTTTT 57.352 39.130 0.00 0.00 47.00 1.94
1817 2145 4.691216 CCTGAAGTTCCCTACTTTTTCTCG 59.309 45.833 0.00 0.00 47.00 4.04
1911 2239 1.948611 GCAGATGGCGTTTCAGGGTAA 60.949 52.381 0.00 0.00 0.00 2.85
1935 2263 3.863400 GCCATCTTTGCTGCAATGAACTT 60.863 43.478 27.55 13.82 32.72 2.66
1968 2296 3.018856 AGAATCGCTCCATTGAATTGCA 58.981 40.909 0.00 0.00 0.00 4.08
1974 2302 3.454375 GCTCCATTGAATTGCAATCAGG 58.546 45.455 13.38 10.30 45.23 3.86
2170 2498 9.109393 CTTATGGCAAACAGCTCTACTTTTATA 57.891 33.333 0.00 0.00 44.79 0.98
2195 2523 6.926630 AGGATGAGGAGGTATTTCTATGTC 57.073 41.667 0.00 0.00 0.00 3.06
2242 2570 5.359860 TCCAGTACCATGTCATGTACTACTG 59.640 44.000 21.97 21.97 34.22 2.74
2244 2572 6.036470 CAGTACCATGTCATGTACTACTGTG 58.964 44.000 21.31 11.70 32.16 3.66
2245 2573 5.715279 AGTACCATGTCATGTACTACTGTGT 59.285 40.000 18.58 7.95 31.68 3.72
2407 2736 9.388506 CTCATTTTCCTAGTAGATGTGTCAAAT 57.611 33.333 0.00 0.00 0.00 2.32
2408 2737 9.739276 TCATTTTCCTAGTAGATGTGTCAAATT 57.261 29.630 0.00 0.00 0.00 1.82
2488 2817 1.879380 CTGAAAATTGCGAGTGTGGGA 59.121 47.619 0.00 0.00 0.00 4.37
2790 3124 6.019881 TGTCGATCATTTATTACTTCACTGCG 60.020 38.462 0.00 0.00 0.00 5.18
2902 3236 5.817816 CACTGTAAATCTTATGGAGGGTGAC 59.182 44.000 0.00 0.00 0.00 3.67
2979 3313 5.485353 TCCTTGGTGTCATTAATGAGTCTCT 59.515 40.000 18.47 0.00 37.51 3.10
3016 3350 4.684757 GCTGGTAAATCTCTCCCTCTTTCC 60.685 50.000 0.00 0.00 0.00 3.13
3021 3355 3.481559 ATCTCTCCCTCTTTCCACTCA 57.518 47.619 0.00 0.00 0.00 3.41
3043 3377 2.223377 GGCAACTGGAGACGTAAAACAG 59.777 50.000 0.00 0.00 35.40 3.16
3397 3731 0.322816 TTCCATCCAGCAGAACCAGC 60.323 55.000 0.00 0.00 0.00 4.85
3402 3736 1.602888 CCAGCAGAACCAGCAAGCT 60.603 57.895 0.00 0.00 35.63 3.74
3412 3746 0.752009 CCAGCAAGCTCATGATGCCT 60.752 55.000 14.64 1.15 40.93 4.75
3436 3770 1.610363 TTGTTGATGCAGGCGGTAAA 58.390 45.000 0.00 0.00 0.00 2.01
3445 3779 1.956477 GCAGGCGGTAAAATGGATGAT 59.044 47.619 0.00 0.00 0.00 2.45
3490 3824 1.270907 AGACAGTGGTGATCCCAGAC 58.729 55.000 3.41 0.00 46.45 3.51
3553 3889 9.500785 AAGTTATTTACATTTTTCACATTGGGG 57.499 29.630 0.00 0.00 0.00 4.96
3736 4072 4.110482 GTTGTACTATACCGCAGTCCAAG 58.890 47.826 0.00 0.00 0.00 3.61
3808 4145 7.817418 TCCTGCAGATTGGGTTTATTAATAC 57.183 36.000 17.39 0.00 0.00 1.89
3809 4146 7.582719 TCCTGCAGATTGGGTTTATTAATACT 58.417 34.615 17.39 0.00 0.00 2.12
3866 4203 1.398390 GGTGGATTAACAAGCAGCTCG 59.602 52.381 0.00 0.00 0.00 5.03
3902 4239 7.288560 ACTCATGATCATTTAAGCCTCAGATT 58.711 34.615 5.16 0.00 0.00 2.40
3903 4240 7.778853 ACTCATGATCATTTAAGCCTCAGATTT 59.221 33.333 5.16 0.00 0.00 2.17
3933 4270 6.249035 TCATTTTCATTAACGGTCCAGAAC 57.751 37.500 0.00 0.00 0.00 3.01
3945 4282 3.556213 CGGTCCAGAACCTAACATTGACA 60.556 47.826 0.00 0.00 46.87 3.58
3967 4304 3.432252 AGGTTCATTAAAGTTCACGAGCG 59.568 43.478 0.00 0.00 0.00 5.03
3994 4331 1.501741 CAACTCCAATTGGCGACCG 59.498 57.895 21.15 8.41 34.44 4.79
3996 4333 3.864686 CTCCAATTGGCGACCGCG 61.865 66.667 20.33 0.00 43.06 6.46
3999 4336 2.254051 CAATTGGCGACCGCGTTT 59.746 55.556 4.92 0.00 43.06 3.60
4008 4345 4.167597 ACCGCGTTTGGTCCAAAT 57.832 50.000 19.89 0.84 37.91 2.32
4015 4352 2.504367 CGTTTGGTCCAAATCCAGTCT 58.496 47.619 19.89 0.00 35.74 3.24
4027 4364 3.584406 ATCCAGTCTGTTTGAGTCGAG 57.416 47.619 0.00 0.00 0.00 4.04
4030 4367 2.034685 CCAGTCTGTTTGAGTCGAGACA 59.965 50.000 5.99 4.30 37.83 3.41
4031 4368 3.490933 CCAGTCTGTTTGAGTCGAGACAA 60.491 47.826 5.99 0.00 37.83 3.18
4042 4379 1.136336 GTCGAGACAAACGCAATCCAC 60.136 52.381 0.00 0.00 0.00 4.02
4070 4407 2.127232 GCGACCGCAAAAGCTGTC 60.127 61.111 9.73 2.51 41.49 3.51
4071 4408 2.556287 CGACCGCAAAAGCTGTCC 59.444 61.111 6.47 0.00 0.00 4.02
4072 4409 2.556287 GACCGCAAAAGCTGTCCG 59.444 61.111 0.00 0.00 0.00 4.79
4073 4410 2.966309 GACCGCAAAAGCTGTCCGG 61.966 63.158 12.92 12.92 44.19 5.14
4074 4411 4.404654 CCGCAAAAGCTGTCCGGC 62.405 66.667 0.00 0.00 31.87 6.13
4075 4412 3.357079 CGCAAAAGCTGTCCGGCT 61.357 61.111 0.00 0.00 45.30 5.52
4076 4413 2.563427 GCAAAAGCTGTCCGGCTC 59.437 61.111 0.00 0.00 42.24 4.70
4077 4414 2.863153 CAAAAGCTGTCCGGCTCG 59.137 61.111 0.00 0.00 42.24 5.03
4078 4415 1.961277 CAAAAGCTGTCCGGCTCGT 60.961 57.895 0.00 0.00 42.24 4.18
4079 4416 1.961277 AAAAGCTGTCCGGCTCGTG 60.961 57.895 0.00 0.00 42.24 4.35
4080 4417 2.660258 AAAAGCTGTCCGGCTCGTGT 62.660 55.000 0.00 0.00 42.24 4.49
4081 4418 3.575351 AAGCTGTCCGGCTCGTGTC 62.575 63.158 0.00 0.00 42.24 3.67
4083 4420 3.680786 CTGTCCGGCTCGTGTCCA 61.681 66.667 0.00 0.00 0.00 4.02
4084 4421 3.633094 CTGTCCGGCTCGTGTCCAG 62.633 68.421 0.00 0.00 0.00 3.86
4102 4439 3.051392 GCTTGACCCAAATCCGGCG 62.051 63.158 0.00 0.00 0.00 6.46
4103 4440 1.674322 CTTGACCCAAATCCGGCGT 60.674 57.895 6.01 0.00 0.00 5.68
4129 4466 3.830192 GCCAGATTTGCGCCCAGG 61.830 66.667 4.18 0.00 0.00 4.45
4145 4482 2.737376 GGCGAACACTGGACGGAC 60.737 66.667 0.00 0.00 0.00 4.79
4147 4484 3.103911 CGAACACTGGACGGACGC 61.104 66.667 0.00 0.00 0.00 5.19
4161 4498 3.973267 GACGCGTCTCCCTGTCTGC 62.973 68.421 31.12 0.67 0.00 4.26
4165 4502 3.775654 GTCTCCCTGTCTGCCCCG 61.776 72.222 0.00 0.00 0.00 5.73
4557 4894 1.530323 CACCCAAACCCTAACTTCGG 58.470 55.000 0.00 0.00 0.00 4.30
4558 4895 0.251033 ACCCAAACCCTAACTTCGGC 60.251 55.000 0.00 0.00 0.00 5.54
4559 4896 0.963856 CCCAAACCCTAACTTCGGCC 60.964 60.000 0.00 0.00 0.00 6.13
4560 4897 1.303091 CCAAACCCTAACTTCGGCCG 61.303 60.000 22.12 22.12 0.00 6.13
4561 4898 0.604511 CAAACCCTAACTTCGGCCGT 60.605 55.000 27.15 8.36 0.00 5.68
4562 4899 0.321034 AAACCCTAACTTCGGCCGTC 60.321 55.000 27.15 0.00 0.00 4.79
4563 4900 2.202703 CCCTAACTTCGGCCGTCG 60.203 66.667 27.15 19.27 40.90 5.12
4564 4901 2.884207 CCTAACTTCGGCCGTCGC 60.884 66.667 27.15 0.00 39.05 5.19
4565 4902 2.181021 CTAACTTCGGCCGTCGCT 59.819 61.111 27.15 11.14 39.05 4.93
4566 4903 1.872679 CTAACTTCGGCCGTCGCTC 60.873 63.158 27.15 0.00 39.05 5.03
4567 4904 3.346631 TAACTTCGGCCGTCGCTCC 62.347 63.158 27.15 0.00 39.05 4.70
4581 4918 4.247380 CTCCGCCCATGCTCCCTC 62.247 72.222 0.00 0.00 34.43 4.30
4592 4929 4.468689 CTCCCTCCGGCCGTTTCC 62.469 72.222 26.12 0.00 0.00 3.13
4610 4947 2.275089 CCGCCATGGGAATGTGGA 59.725 61.111 15.13 0.00 0.00 4.02
4611 4948 1.379710 CCGCCATGGGAATGTGGAA 60.380 57.895 15.13 0.00 0.00 3.53
4612 4949 1.386525 CCGCCATGGGAATGTGGAAG 61.387 60.000 15.13 0.00 0.00 3.46
4613 4950 0.680921 CGCCATGGGAATGTGGAAGT 60.681 55.000 15.13 0.00 0.00 3.01
4614 4951 0.819582 GCCATGGGAATGTGGAAGTG 59.180 55.000 15.13 0.00 0.00 3.16
4615 4952 1.477553 CCATGGGAATGTGGAAGTGG 58.522 55.000 2.85 0.00 0.00 4.00
4616 4953 1.005805 CCATGGGAATGTGGAAGTGGA 59.994 52.381 2.85 0.00 0.00 4.02
4617 4954 2.358510 CCATGGGAATGTGGAAGTGGAT 60.359 50.000 2.85 0.00 0.00 3.41
4618 4955 2.806945 TGGGAATGTGGAAGTGGATC 57.193 50.000 0.00 0.00 0.00 3.36
4619 4956 1.284785 TGGGAATGTGGAAGTGGATCC 59.715 52.381 4.20 4.20 40.10 3.36
4620 4957 1.410224 GGGAATGTGGAAGTGGATCCC 60.410 57.143 9.90 0.11 38.82 3.85
4621 4958 1.410224 GGAATGTGGAAGTGGATCCCC 60.410 57.143 9.90 3.28 38.82 4.81
4622 4959 0.255890 AATGTGGAAGTGGATCCCCG 59.744 55.000 9.90 0.00 38.82 5.73
4623 4960 1.635817 ATGTGGAAGTGGATCCCCGG 61.636 60.000 9.90 0.00 38.82 5.73
4624 4961 3.407967 TGGAAGTGGATCCCCGGC 61.408 66.667 9.90 0.00 38.82 6.13
4625 4962 3.407967 GGAAGTGGATCCCCGGCA 61.408 66.667 9.90 0.00 33.05 5.69
4626 4963 2.674754 GAAGTGGATCCCCGGCAA 59.325 61.111 9.90 0.00 34.29 4.52
4627 4964 1.452108 GAAGTGGATCCCCGGCAAG 60.452 63.158 9.90 0.00 34.29 4.01
4628 4965 1.910580 GAAGTGGATCCCCGGCAAGA 61.911 60.000 9.90 0.00 34.29 3.02
4629 4966 1.497309 AAGTGGATCCCCGGCAAGAA 61.497 55.000 9.90 0.00 34.29 2.52
4630 4967 1.001393 GTGGATCCCCGGCAAGAAA 60.001 57.895 9.90 0.00 34.29 2.52
4631 4968 1.032114 GTGGATCCCCGGCAAGAAAG 61.032 60.000 9.90 0.00 34.29 2.62
4632 4969 1.453928 GGATCCCCGGCAAGAAAGG 60.454 63.158 0.00 0.00 0.00 3.11
4633 4970 1.453928 GATCCCCGGCAAGAAAGGG 60.454 63.158 0.00 0.00 44.67 3.95
4635 4972 2.157452 TCCCCGGCAAGAAAGGGAA 61.157 57.895 0.00 0.00 45.73 3.97
4636 4973 2.137177 TCCCCGGCAAGAAAGGGAAG 62.137 60.000 0.00 0.00 45.73 3.46
4637 4974 3.278157 CCGGCAAGAAAGGGAAGC 58.722 61.111 0.00 0.00 0.00 3.86
4638 4975 1.603455 CCGGCAAGAAAGGGAAGCA 60.603 57.895 0.00 0.00 0.00 3.91
4639 4976 0.967380 CCGGCAAGAAAGGGAAGCAT 60.967 55.000 0.00 0.00 0.00 3.79
4640 4977 0.171903 CGGCAAGAAAGGGAAGCATG 59.828 55.000 0.00 0.00 0.00 4.06
4641 4978 1.549203 GGCAAGAAAGGGAAGCATGA 58.451 50.000 0.00 0.00 0.00 3.07
4642 4979 1.203287 GGCAAGAAAGGGAAGCATGAC 59.797 52.381 0.00 0.00 0.00 3.06
4643 4980 1.203287 GCAAGAAAGGGAAGCATGACC 59.797 52.381 0.00 0.00 0.00 4.02
4644 4981 2.517959 CAAGAAAGGGAAGCATGACCA 58.482 47.619 0.00 0.00 0.00 4.02
4645 4982 3.094572 CAAGAAAGGGAAGCATGACCAT 58.905 45.455 0.00 0.00 0.00 3.55
4646 4983 2.731572 AGAAAGGGAAGCATGACCATG 58.268 47.619 0.00 5.67 41.60 3.66
4647 4984 2.309755 AGAAAGGGAAGCATGACCATGA 59.690 45.455 13.67 0.00 41.20 3.07
4648 4985 2.431954 AAGGGAAGCATGACCATGAG 57.568 50.000 13.67 0.00 41.20 2.90
4649 4986 0.549950 AGGGAAGCATGACCATGAGG 59.450 55.000 13.67 0.00 41.20 3.86
4650 4987 1.105759 GGGAAGCATGACCATGAGGC 61.106 60.000 13.67 0.00 41.20 4.70
4651 4988 1.442526 GGAAGCATGACCATGAGGCG 61.443 60.000 13.67 0.00 41.20 5.52
4652 4989 1.442526 GAAGCATGACCATGAGGCGG 61.443 60.000 13.67 0.00 41.20 6.13
4653 4990 2.898920 AAGCATGACCATGAGGCGGG 62.899 60.000 13.67 0.00 41.20 6.13
4654 4991 2.591753 CATGACCATGAGGCGGGT 59.408 61.111 4.03 0.00 41.20 5.28
4655 4992 1.077501 CATGACCATGAGGCGGGTT 60.078 57.895 4.03 0.00 41.20 4.11
4656 4993 1.097547 CATGACCATGAGGCGGGTTC 61.098 60.000 4.03 0.00 41.20 3.62
4657 4994 2.124695 GACCATGAGGCGGGTTCC 60.125 66.667 0.00 0.00 37.57 3.62
4658 4995 2.610859 ACCATGAGGCGGGTTCCT 60.611 61.111 0.00 0.00 39.06 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.253838 TACCCCTTTGCCTGCCGT 61.254 61.111 0.00 0.00 0.00 5.68
84 85 2.363711 CTATTGCCAGGCGAGCCGTA 62.364 60.000 7.66 0.00 41.95 4.02
111 112 3.796443 TCGCCTCCGTCGTTCGAG 61.796 66.667 0.00 0.00 42.86 4.04
112 113 4.093952 GTCGCCTCCGTCGTTCGA 62.094 66.667 4.60 0.00 42.86 3.71
707 708 4.148825 CTTCCTCCAGTCCGGCCG 62.149 72.222 21.04 21.04 33.14 6.13
752 753 4.689345 GCGGCAGAATAGATACCGTAAAAT 59.311 41.667 0.00 0.00 45.53 1.82
759 760 0.038159 AGCGCGGCAGAATAGATACC 60.038 55.000 8.83 0.00 0.00 2.73
770 771 2.048970 TCGAAAACTAGCGCGGCA 60.049 55.556 8.83 0.00 0.00 5.69
820 821 0.526739 AAACTTGACCCGCAAAACGC 60.527 50.000 0.00 0.00 41.76 4.84
821 822 1.915952 AAAACTTGACCCGCAAAACG 58.084 45.000 0.00 0.00 43.15 3.60
822 823 2.222931 GCAAAAACTTGACCCGCAAAAC 60.223 45.455 0.00 0.00 35.74 2.43
823 824 2.003301 GCAAAAACTTGACCCGCAAAA 58.997 42.857 0.00 0.00 35.74 2.44
824 825 1.646189 GCAAAAACTTGACCCGCAAA 58.354 45.000 0.00 0.00 35.74 3.68
825 826 0.526524 CGCAAAAACTTGACCCGCAA 60.527 50.000 0.00 0.00 34.73 4.85
826 827 1.064946 CGCAAAAACTTGACCCGCA 59.935 52.632 0.00 0.00 0.00 5.69
827 828 1.660264 CCGCAAAAACTTGACCCGC 60.660 57.895 0.00 0.00 0.00 6.13
828 829 1.007849 CCCGCAAAAACTTGACCCG 60.008 57.895 0.00 0.00 0.00 5.28
829 830 1.365999 CCCCGCAAAAACTTGACCC 59.634 57.895 0.00 0.00 0.00 4.46
830 831 0.031585 GACCCCGCAAAAACTTGACC 59.968 55.000 0.00 0.00 0.00 4.02
831 832 1.029681 AGACCCCGCAAAAACTTGAC 58.970 50.000 0.00 0.00 0.00 3.18
832 833 1.028905 CAGACCCCGCAAAAACTTGA 58.971 50.000 0.00 0.00 0.00 3.02
833 834 0.597377 GCAGACCCCGCAAAAACTTG 60.597 55.000 0.00 0.00 0.00 3.16
834 835 1.040339 TGCAGACCCCGCAAAAACTT 61.040 50.000 0.00 0.00 36.17 2.66
835 836 1.040339 TTGCAGACCCCGCAAAAACT 61.040 50.000 0.00 0.00 45.91 2.66
836 837 1.439644 TTGCAGACCCCGCAAAAAC 59.560 52.632 0.00 0.00 45.91 2.43
837 838 3.941081 TTGCAGACCCCGCAAAAA 58.059 50.000 0.00 0.00 45.91 1.94
841 842 2.192861 CAACTTTGCAGACCCCGCA 61.193 57.895 0.00 0.00 37.68 5.69
842 843 2.644992 CAACTTTGCAGACCCCGC 59.355 61.111 0.00 0.00 0.00 6.13
860 861 0.615331 TTGCAGGCTCCCAGTAAGAG 59.385 55.000 0.00 0.00 0.00 2.85
861 862 1.064003 TTTGCAGGCTCCCAGTAAGA 58.936 50.000 0.00 0.00 0.00 2.10
862 863 1.541588 GTTTTGCAGGCTCCCAGTAAG 59.458 52.381 0.00 0.00 0.00 2.34
913 914 1.769026 CTAGTGCTAGTGGAGGCAGA 58.231 55.000 0.00 0.00 39.22 4.26
926 927 2.893682 AATTGGGGAGGCGCTAGTGC 62.894 60.000 20.17 20.17 0.00 4.40
1112 1113 1.673767 AGAAGGATGGAGCAAAGGGA 58.326 50.000 0.00 0.00 0.00 4.20
1184 1191 6.143206 CCCCCAAAATTATCTTATTCCAGGT 58.857 40.000 0.00 0.00 0.00 4.00
1209 1216 6.320672 TCACTAGCCTATGTACTACCAGAAAC 59.679 42.308 0.00 0.00 0.00 2.78
1237 1565 6.026947 AGACCAGTATAATCATTACTCGCC 57.973 41.667 0.00 0.00 0.00 5.54
1266 1594 1.108776 CGGAGGGAGTACGAATGGAA 58.891 55.000 0.00 0.00 0.00 3.53
1274 1602 1.509923 CGTTGGACGGAGGGAGTAC 59.490 63.158 0.00 0.00 38.08 2.73
1275 1603 4.007457 CGTTGGACGGAGGGAGTA 57.993 61.111 0.00 0.00 38.08 2.59
1285 1613 4.870221 ACTAGTGTCAAAAACGTTGGAC 57.130 40.909 16.63 16.63 38.09 4.02
1286 1614 8.714179 CATTATACTAGTGTCAAAAACGTTGGA 58.286 33.333 5.39 0.00 0.00 3.53
1287 1615 8.500773 ACATTATACTAGTGTCAAAAACGTTGG 58.499 33.333 5.39 0.00 0.00 3.77
1288 1616 9.872757 AACATTATACTAGTGTCAAAAACGTTG 57.127 29.630 5.39 0.00 0.00 4.10
1317 1645 9.025041 CCTCTGTCCCAAAATATAAGAACTTTT 57.975 33.333 0.00 0.00 0.00 2.27
1318 1646 7.615757 CCCTCTGTCCCAAAATATAAGAACTTT 59.384 37.037 0.00 0.00 0.00 2.66
1319 1647 7.036863 TCCCTCTGTCCCAAAATATAAGAACTT 60.037 37.037 0.00 0.00 0.00 2.66
1320 1648 6.447084 TCCCTCTGTCCCAAAATATAAGAACT 59.553 38.462 0.00 0.00 0.00 3.01
1321 1649 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
1322 1650 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
1323 1651 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
1324 1652 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
1325 1653 7.947782 ATACTCCCTCTGTCCCAAAATATAA 57.052 36.000 0.00 0.00 0.00 0.98
1326 1654 7.947782 AATACTCCCTCTGTCCCAAAATATA 57.052 36.000 0.00 0.00 0.00 0.86
1327 1655 6.848562 AATACTCCCTCTGTCCCAAAATAT 57.151 37.500 0.00 0.00 0.00 1.28
1328 1656 7.758820 TTAATACTCCCTCTGTCCCAAAATA 57.241 36.000 0.00 0.00 0.00 1.40
1329 1657 6.652205 TTAATACTCCCTCTGTCCCAAAAT 57.348 37.500 0.00 0.00 0.00 1.82
1330 1658 6.652205 ATTAATACTCCCTCTGTCCCAAAA 57.348 37.500 0.00 0.00 0.00 2.44
1331 1659 6.652205 AATTAATACTCCCTCTGTCCCAAA 57.348 37.500 0.00 0.00 0.00 3.28
1332 1660 7.758820 TTAATTAATACTCCCTCTGTCCCAA 57.241 36.000 0.00 0.00 0.00 4.12
1333 1661 7.626084 TCTTTAATTAATACTCCCTCTGTCCCA 59.374 37.037 0.00 0.00 0.00 4.37
1334 1662 8.030913 TCTTTAATTAATACTCCCTCTGTCCC 57.969 38.462 0.00 0.00 0.00 4.46
1335 1663 9.901172 TTTCTTTAATTAATACTCCCTCTGTCC 57.099 33.333 0.00 0.00 0.00 4.02
1392 1720 7.041372 GCCAACACTATCTTCAAGTTAAACAGA 60.041 37.037 0.00 0.00 0.00 3.41
1412 1740 2.552155 GGAGTAGAACACATGGCCAACA 60.552 50.000 10.96 0.00 0.00 3.33
1413 1741 2.084546 GGAGTAGAACACATGGCCAAC 58.915 52.381 10.96 0.00 0.00 3.77
1415 1743 0.618458 GGGAGTAGAACACATGGCCA 59.382 55.000 8.56 8.56 0.00 5.36
1416 1744 0.912486 AGGGAGTAGAACACATGGCC 59.088 55.000 0.00 0.00 0.00 5.36
1417 1745 2.789409 AAGGGAGTAGAACACATGGC 57.211 50.000 0.00 0.00 0.00 4.40
1418 1746 7.827236 TGTTTATTAAGGGAGTAGAACACATGG 59.173 37.037 0.00 0.00 0.00 3.66
1419 1747 8.786826 TGTTTATTAAGGGAGTAGAACACATG 57.213 34.615 0.00 0.00 0.00 3.21
1431 1759 9.841295 ACGCTCTTATATTTGTTTATTAAGGGA 57.159 29.630 0.00 0.00 0.00 4.20
1442 1770 9.378551 TGTTTAGATCAACGCTCTTATATTTGT 57.621 29.630 0.00 0.00 0.00 2.83
1443 1771 9.638300 GTGTTTAGATCAACGCTCTTATATTTG 57.362 33.333 0.00 0.00 34.81 2.32
1444 1772 9.601217 AGTGTTTAGATCAACGCTCTTATATTT 57.399 29.630 6.25 0.00 42.63 1.40
1445 1773 9.601217 AAGTGTTTAGATCAACGCTCTTATATT 57.399 29.630 11.21 0.00 44.91 1.28
1449 1777 9.512435 GTATAAGTGTTTAGATCAACGCTCTTA 57.488 33.333 11.21 9.76 44.91 2.10
1450 1778 7.220300 CGTATAAGTGTTTAGATCAACGCTCTT 59.780 37.037 11.21 8.37 44.91 2.85
1451 1779 6.691818 CGTATAAGTGTTTAGATCAACGCTCT 59.308 38.462 11.21 6.26 44.91 4.09
1452 1780 6.471519 ACGTATAAGTGTTTAGATCAACGCTC 59.528 38.462 11.21 1.03 44.91 5.03
1454 1782 6.564854 ACGTATAAGTGTTTAGATCAACGC 57.435 37.500 0.00 0.00 37.42 4.84
1464 1792 9.638239 TCCGTAAAGAAATACGTATAAGTGTTT 57.362 29.630 8.83 12.05 45.43 2.83
1465 1793 9.294030 CTCCGTAAAGAAATACGTATAAGTGTT 57.706 33.333 8.83 0.00 45.43 3.32
1466 1794 7.917505 CCTCCGTAAAGAAATACGTATAAGTGT 59.082 37.037 8.83 0.00 45.43 3.55
1467 1795 7.380602 CCCTCCGTAAAGAAATACGTATAAGTG 59.619 40.741 8.83 0.00 45.43 3.16
1468 1796 7.285401 TCCCTCCGTAAAGAAATACGTATAAGT 59.715 37.037 8.83 0.00 45.43 2.24
1469 1797 7.651808 TCCCTCCGTAAAGAAATACGTATAAG 58.348 38.462 8.83 0.00 45.43 1.73
1470 1798 7.285401 ACTCCCTCCGTAAAGAAATACGTATAA 59.715 37.037 8.83 0.00 45.43 0.98
1471 1799 6.772716 ACTCCCTCCGTAAAGAAATACGTATA 59.227 38.462 8.83 0.00 45.43 1.47
1472 1800 5.595952 ACTCCCTCCGTAAAGAAATACGTAT 59.404 40.000 1.14 1.14 45.43 3.06
1473 1801 4.949856 ACTCCCTCCGTAAAGAAATACGTA 59.050 41.667 0.00 0.00 45.43 3.57
1474 1802 3.766051 ACTCCCTCCGTAAAGAAATACGT 59.234 43.478 0.00 0.00 45.43 3.57
1475 1803 4.382345 ACTCCCTCCGTAAAGAAATACG 57.618 45.455 0.15 0.15 46.22 3.06
1476 1804 9.993454 ATTAATACTCCCTCCGTAAAGAAATAC 57.007 33.333 0.00 0.00 0.00 1.89
1481 1809 8.517878 CGATAATTAATACTCCCTCCGTAAAGA 58.482 37.037 0.00 0.00 0.00 2.52
1482 1810 8.302438 ACGATAATTAATACTCCCTCCGTAAAG 58.698 37.037 0.00 0.00 0.00 1.85
1483 1811 8.181904 ACGATAATTAATACTCCCTCCGTAAA 57.818 34.615 0.00 0.00 0.00 2.01
1484 1812 7.765695 ACGATAATTAATACTCCCTCCGTAA 57.234 36.000 0.00 0.00 0.00 3.18
1485 1813 7.765695 AACGATAATTAATACTCCCTCCGTA 57.234 36.000 0.00 0.00 0.00 4.02
1486 1814 6.661304 AACGATAATTAATACTCCCTCCGT 57.339 37.500 0.00 0.00 0.00 4.69
1515 1843 2.159156 CGCACCTTGCTACCAGTATGTA 60.159 50.000 0.00 0.00 42.25 2.29
1516 1844 1.405526 CGCACCTTGCTACCAGTATGT 60.406 52.381 0.00 0.00 42.25 2.29
1518 1846 1.191535 TCGCACCTTGCTACCAGTAT 58.808 50.000 0.00 0.00 42.25 2.12
1521 1849 0.517316 GTTTCGCACCTTGCTACCAG 59.483 55.000 0.00 0.00 42.25 4.00
1525 1853 3.396260 ACTTAGTTTCGCACCTTGCTA 57.604 42.857 0.00 0.00 42.25 3.49
1536 1864 5.175090 ACAAGAGCAAGCAACTTAGTTTC 57.825 39.130 0.00 0.00 0.00 2.78
1540 1868 6.583806 CCATTAAACAAGAGCAAGCAACTTAG 59.416 38.462 0.00 0.00 0.00 2.18
1556 1884 3.822940 ACTTTCGGTCCACCATTAAACA 58.177 40.909 0.00 0.00 35.14 2.83
1558 1886 3.570550 CCAACTTTCGGTCCACCATTAAA 59.429 43.478 0.00 0.00 35.14 1.52
1572 1900 6.606768 CACTTAAGAAGCAGATCCAACTTTC 58.393 40.000 10.09 0.00 0.00 2.62
1574 1902 4.457257 GCACTTAAGAAGCAGATCCAACTT 59.543 41.667 10.09 0.00 0.00 2.66
1591 1919 8.958119 AAATCGAGAACCATAATTAGCACTTA 57.042 30.769 0.00 0.00 0.00 2.24
1612 1940 6.422223 CCGACAGATGCACAATAAGTAAATC 58.578 40.000 0.00 0.00 0.00 2.17
1614 1942 4.094294 GCCGACAGATGCACAATAAGTAAA 59.906 41.667 0.00 0.00 0.00 2.01
1623 1951 0.522626 CAAATGCCGACAGATGCACA 59.477 50.000 0.00 0.00 40.88 4.57
1724 2052 9.107177 TGCAAACAACTGAATTGACATAAATTT 57.893 25.926 0.00 0.00 41.23 1.82
1725 2053 8.659925 TGCAAACAACTGAATTGACATAAATT 57.340 26.923 0.00 0.00 41.23 1.82
1764 2092 2.172293 TGGAAAAAGGCAAAAGCACCAT 59.828 40.909 0.00 0.00 0.00 3.55
1813 2141 4.433615 GTCTCAACCTTGATAATGCGAGA 58.566 43.478 0.00 0.00 36.46 4.04
1817 2145 2.614057 CCGGTCTCAACCTTGATAATGC 59.386 50.000 0.00 0.00 44.04 3.56
1896 2224 0.963355 GGCATTACCCTGAAACGCCA 60.963 55.000 0.00 0.00 37.98 5.69
1911 2239 1.828595 TCATTGCAGCAAAGATGGCAT 59.171 42.857 12.97 0.00 35.98 4.40
1935 2263 7.962964 ATGGAGCGATTCTCGAAATAAATAA 57.037 32.000 0.00 0.00 43.74 1.40
1964 2292 0.704076 ACTAAGGGCCCTGATTGCAA 59.296 50.000 29.50 0.00 0.00 4.08
1968 2296 2.270434 TGAGACTAAGGGCCCTGATT 57.730 50.000 29.50 13.33 0.00 2.57
1974 2302 2.769095 ACAAGAGATGAGACTAAGGGCC 59.231 50.000 0.00 0.00 0.00 5.80
2170 2498 7.348274 TGACATAGAAATACCTCCTCATCCTTT 59.652 37.037 0.00 0.00 0.00 3.11
2242 2570 9.760660 GAAGACATGATATTTAGTTTGTCACAC 57.239 33.333 0.00 0.00 36.74 3.82
2244 2572 9.979270 CTGAAGACATGATATTTAGTTTGTCAC 57.021 33.333 0.00 0.00 36.74 3.67
2245 2573 9.166173 CCTGAAGACATGATATTTAGTTTGTCA 57.834 33.333 0.00 0.00 36.74 3.58
2426 2755 1.924524 CGCGACGATTCTGTTACCATT 59.075 47.619 0.00 0.00 0.00 3.16
2488 2817 6.053005 TCGAATAACTTTCAAACCACAGTCT 58.947 36.000 0.00 0.00 0.00 3.24
2734 3067 1.063027 CGTGTCATATTGCTGGTGCTG 59.937 52.381 0.00 0.00 40.48 4.41
2790 3124 4.585955 TTGTTCGGCTCTATAGATCACC 57.414 45.455 2.11 4.86 0.00 4.02
2902 3236 4.308265 CATCTGAGCCACTGACTATCATG 58.692 47.826 0.00 0.00 0.00 3.07
2961 3295 5.751028 GTGCCTAGAGACTCATTAATGACAC 59.249 44.000 14.23 12.75 32.50 3.67
2979 3313 1.279496 ACCAGCTTCATCTGTGCCTA 58.721 50.000 0.00 0.00 32.32 3.93
3016 3350 0.668706 CGTCTCCAGTTGCCTGAGTG 60.669 60.000 0.00 0.00 41.50 3.51
3021 3355 2.158871 TGTTTTACGTCTCCAGTTGCCT 60.159 45.455 0.00 0.00 0.00 4.75
3043 3377 1.068127 GATTGGAAGGATGCACCATGC 59.932 52.381 7.86 0.00 45.29 4.06
3421 3755 1.102154 CCATTTTACCGCCTGCATCA 58.898 50.000 0.00 0.00 0.00 3.07
3436 3770 6.368791 CGACAATGACCGTAATATCATCCATT 59.631 38.462 0.00 0.00 34.41 3.16
3445 3779 3.233684 TGTGCGACAATGACCGTAATA 57.766 42.857 0.00 0.00 0.00 0.98
3490 3824 4.822350 TGAATCTACAGGTCTACCTCATCG 59.178 45.833 0.00 0.00 46.65 3.84
3553 3889 6.865726 TGCAAATATCACACCACATAAACAAC 59.134 34.615 0.00 0.00 0.00 3.32
3866 4203 4.046938 TGATCATGAGTCTTAACGAGCC 57.953 45.455 0.09 0.00 0.00 4.70
3902 4239 6.744112 ACCGTTAATGAAAATGAGCTTGAAA 58.256 32.000 0.00 0.00 0.00 2.69
3903 4240 6.325919 ACCGTTAATGAAAATGAGCTTGAA 57.674 33.333 0.00 0.00 0.00 2.69
3933 4270 8.110860 ACTTTAATGAACCTGTCAATGTTAGG 57.889 34.615 4.50 4.50 40.50 2.69
3945 4282 3.432252 CGCTCGTGAACTTTAATGAACCT 59.568 43.478 0.00 0.00 0.00 3.50
3967 4304 1.135402 CAATTGGAGTTGCCCTAACGC 60.135 52.381 0.00 0.00 44.15 4.84
3977 4314 2.332654 GCGGTCGCCAATTGGAGTT 61.333 57.895 29.02 0.00 37.39 3.01
3994 4331 0.958822 ACTGGATTTGGACCAAACGC 59.041 50.000 21.85 15.88 36.13 4.84
3996 4333 3.222603 ACAGACTGGATTTGGACCAAAC 58.777 45.455 21.85 14.71 36.13 2.93
3999 4336 3.117701 TCAAACAGACTGGATTTGGACCA 60.118 43.478 14.98 0.00 34.70 4.02
4005 4342 4.039245 TCTCGACTCAAACAGACTGGATTT 59.961 41.667 7.51 0.00 0.00 2.17
4007 4344 3.057174 GTCTCGACTCAAACAGACTGGAT 60.057 47.826 7.51 0.00 33.76 3.41
4008 4345 2.293677 GTCTCGACTCAAACAGACTGGA 59.706 50.000 7.51 0.00 33.76 3.86
4027 4364 1.442017 GCCGTGGATTGCGTTTGTC 60.442 57.895 0.00 0.00 0.00 3.18
4030 4367 3.370231 GGGCCGTGGATTGCGTTT 61.370 61.111 0.00 0.00 0.00 3.60
4031 4368 4.652131 TGGGCCGTGGATTGCGTT 62.652 61.111 0.00 0.00 0.00 4.84
4070 4407 4.379243 AAGCTGGACACGAGCCGG 62.379 66.667 0.00 0.00 37.12 6.13
4071 4408 3.114616 CAAGCTGGACACGAGCCG 61.115 66.667 0.00 0.00 37.12 5.52
4072 4409 2.029844 GTCAAGCTGGACACGAGCC 61.030 63.158 16.79 0.00 37.12 4.70
4073 4410 2.029844 GGTCAAGCTGGACACGAGC 61.030 63.158 22.75 1.04 39.59 5.03
4074 4411 1.374758 GGGTCAAGCTGGACACGAG 60.375 63.158 22.75 0.00 39.59 4.18
4075 4412 1.691195 TTGGGTCAAGCTGGACACGA 61.691 55.000 22.75 16.66 44.26 4.35
4076 4413 0.817634 TTTGGGTCAAGCTGGACACG 60.818 55.000 22.75 0.00 44.26 4.49
4077 4414 1.541588 GATTTGGGTCAAGCTGGACAC 59.458 52.381 22.75 20.17 41.65 3.67
4078 4415 1.547675 GGATTTGGGTCAAGCTGGACA 60.548 52.381 22.75 2.33 39.59 4.02
4079 4416 1.177401 GGATTTGGGTCAAGCTGGAC 58.823 55.000 13.29 13.29 37.06 4.02
4080 4417 0.322456 CGGATTTGGGTCAAGCTGGA 60.322 55.000 0.00 0.00 0.00 3.86
4081 4418 1.315257 CCGGATTTGGGTCAAGCTGG 61.315 60.000 0.00 0.00 0.00 4.85
4082 4419 1.937546 GCCGGATTTGGGTCAAGCTG 61.938 60.000 5.05 0.00 0.00 4.24
4083 4420 1.678970 GCCGGATTTGGGTCAAGCT 60.679 57.895 5.05 0.00 0.00 3.74
4084 4421 2.885113 GCCGGATTTGGGTCAAGC 59.115 61.111 5.05 0.00 0.00 4.01
4085 4422 0.391927 TACGCCGGATTTGGGTCAAG 60.392 55.000 5.05 0.00 0.00 3.02
4086 4423 0.036448 TTACGCCGGATTTGGGTCAA 59.964 50.000 5.05 0.00 0.00 3.18
4102 4439 3.359654 CGCAAATCTGGCCGTAATTTAC 58.640 45.455 0.00 0.00 0.00 2.01
4103 4440 2.223386 GCGCAAATCTGGCCGTAATTTA 60.223 45.455 0.30 0.00 0.00 1.40
4129 4466 3.103911 CGTCCGTCCAGTGTTCGC 61.104 66.667 0.00 0.00 0.00 4.70
4142 4479 3.063084 AGACAGGGAGACGCGTCC 61.063 66.667 34.08 24.38 35.64 4.79
4145 4482 4.803426 GGCAGACAGGGAGACGCG 62.803 72.222 3.53 3.53 0.00 6.01
4147 4484 3.775654 GGGGCAGACAGGGAGACG 61.776 72.222 0.00 0.00 0.00 4.18
4538 4875 1.530323 CCGAAGTTAGGGTTTGGGTG 58.470 55.000 0.00 0.00 0.00 4.61
4539 4876 0.251033 GCCGAAGTTAGGGTTTGGGT 60.251 55.000 4.03 0.00 0.00 4.51
4540 4877 0.963856 GGCCGAAGTTAGGGTTTGGG 60.964 60.000 4.03 0.00 0.00 4.12
4541 4878 1.303091 CGGCCGAAGTTAGGGTTTGG 61.303 60.000 24.07 0.00 0.00 3.28
4542 4879 0.604511 ACGGCCGAAGTTAGGGTTTG 60.605 55.000 35.90 0.00 0.00 2.93
4543 4880 0.321034 GACGGCCGAAGTTAGGGTTT 60.321 55.000 35.90 3.54 0.00 3.27
4544 4881 1.294459 GACGGCCGAAGTTAGGGTT 59.706 57.895 35.90 4.22 0.00 4.11
4545 4882 2.976356 GACGGCCGAAGTTAGGGT 59.024 61.111 35.90 5.18 0.00 4.34
4546 4883 2.202703 CGACGGCCGAAGTTAGGG 60.203 66.667 35.90 7.13 41.76 3.53
4547 4884 2.884207 GCGACGGCCGAAGTTAGG 60.884 66.667 35.90 12.87 41.76 2.69
4548 4885 1.872679 GAGCGACGGCCGAAGTTAG 60.873 63.158 35.90 16.19 41.76 2.34
4549 4886 2.180017 GAGCGACGGCCGAAGTTA 59.820 61.111 35.90 0.00 41.76 2.24
4550 4887 4.736896 GGAGCGACGGCCGAAGTT 62.737 66.667 35.90 22.52 41.76 2.66
4593 4930 1.379710 TTCCACATTCCCATGGCGG 60.380 57.895 6.09 0.00 35.81 6.13
4594 4931 0.680921 ACTTCCACATTCCCATGGCG 60.681 55.000 6.09 0.00 35.81 5.69
4595 4932 0.819582 CACTTCCACATTCCCATGGC 59.180 55.000 6.09 0.00 35.81 4.40
4596 4933 1.005805 TCCACTTCCACATTCCCATGG 59.994 52.381 4.14 4.14 34.27 3.66
4597 4934 2.512692 TCCACTTCCACATTCCCATG 57.487 50.000 0.00 0.00 36.34 3.66
4598 4935 2.091665 GGATCCACTTCCACATTCCCAT 60.092 50.000 6.95 0.00 35.72 4.00
4599 4936 1.284785 GGATCCACTTCCACATTCCCA 59.715 52.381 6.95 0.00 35.72 4.37
4600 4937 1.410224 GGGATCCACTTCCACATTCCC 60.410 57.143 15.23 0.00 37.53 3.97
4601 4938 1.410224 GGGGATCCACTTCCACATTCC 60.410 57.143 15.23 0.00 39.16 3.01
4602 4939 1.747206 CGGGGATCCACTTCCACATTC 60.747 57.143 13.38 0.00 39.32 2.67
4603 4940 0.255890 CGGGGATCCACTTCCACATT 59.744 55.000 13.38 0.00 39.32 2.71
4604 4941 1.635817 CCGGGGATCCACTTCCACAT 61.636 60.000 13.38 0.00 39.32 3.21
4605 4942 2.297895 CCGGGGATCCACTTCCACA 61.298 63.158 13.38 0.00 39.32 4.17
4606 4943 2.590092 CCGGGGATCCACTTCCAC 59.410 66.667 13.38 0.00 37.53 4.02
4607 4944 3.407967 GCCGGGGATCCACTTCCA 61.408 66.667 13.38 0.00 37.53 3.53
4608 4945 2.893682 CTTGCCGGGGATCCACTTCC 62.894 65.000 13.38 3.34 34.83 3.46
4609 4946 1.452108 CTTGCCGGGGATCCACTTC 60.452 63.158 13.38 3.81 0.00 3.01
4610 4947 1.497309 TTCTTGCCGGGGATCCACTT 61.497 55.000 13.38 0.00 0.00 3.16
4611 4948 1.497309 TTTCTTGCCGGGGATCCACT 61.497 55.000 13.38 0.00 0.00 4.00
4612 4949 1.001393 TTTCTTGCCGGGGATCCAC 60.001 57.895 15.23 9.60 0.00 4.02
4613 4950 1.302949 CTTTCTTGCCGGGGATCCA 59.697 57.895 15.23 0.00 0.00 3.41
4614 4951 1.453928 CCTTTCTTGCCGGGGATCC 60.454 63.158 1.92 1.92 0.00 3.36
4615 4952 1.453928 CCCTTTCTTGCCGGGGATC 60.454 63.158 2.18 0.00 41.25 3.36
4616 4953 1.506028 TTCCCTTTCTTGCCGGGGAT 61.506 55.000 2.18 0.00 46.02 3.85
4617 4954 2.137177 CTTCCCTTTCTTGCCGGGGA 62.137 60.000 2.18 0.00 45.22 4.81
4618 4955 1.678970 CTTCCCTTTCTTGCCGGGG 60.679 63.158 2.18 0.00 38.55 5.73
4619 4956 2.343426 GCTTCCCTTTCTTGCCGGG 61.343 63.158 2.18 0.00 39.41 5.73
4620 4957 0.967380 ATGCTTCCCTTTCTTGCCGG 60.967 55.000 0.00 0.00 0.00 6.13
4621 4958 0.171903 CATGCTTCCCTTTCTTGCCG 59.828 55.000 0.00 0.00 0.00 5.69
4622 4959 1.203287 GTCATGCTTCCCTTTCTTGCC 59.797 52.381 0.00 0.00 0.00 4.52
4623 4960 1.203287 GGTCATGCTTCCCTTTCTTGC 59.797 52.381 0.00 0.00 0.00 4.01
4624 4961 2.517959 TGGTCATGCTTCCCTTTCTTG 58.482 47.619 0.00 0.00 0.00 3.02
4625 4962 2.978156 TGGTCATGCTTCCCTTTCTT 57.022 45.000 0.00 0.00 0.00 2.52
4626 4963 2.309755 TCATGGTCATGCTTCCCTTTCT 59.690 45.455 6.10 0.00 38.65 2.52
4627 4964 2.686915 CTCATGGTCATGCTTCCCTTTC 59.313 50.000 6.10 0.00 38.65 2.62
4628 4965 2.622452 CCTCATGGTCATGCTTCCCTTT 60.622 50.000 6.10 0.00 38.65 3.11
4629 4966 1.064166 CCTCATGGTCATGCTTCCCTT 60.064 52.381 6.10 0.00 38.65 3.95
4630 4967 0.549950 CCTCATGGTCATGCTTCCCT 59.450 55.000 6.10 0.00 38.65 4.20
4631 4968 1.105759 GCCTCATGGTCATGCTTCCC 61.106 60.000 6.10 0.00 38.65 3.97
4632 4969 1.442526 CGCCTCATGGTCATGCTTCC 61.443 60.000 6.10 0.00 38.65 3.46
4633 4970 1.442526 CCGCCTCATGGTCATGCTTC 61.443 60.000 6.10 0.00 38.65 3.86
4634 4971 1.452651 CCGCCTCATGGTCATGCTT 60.453 57.895 6.10 0.00 38.65 3.91
4635 4972 2.191375 CCGCCTCATGGTCATGCT 59.809 61.111 6.10 0.00 38.65 3.79
4636 4973 2.903855 CCCGCCTCATGGTCATGC 60.904 66.667 6.10 0.00 38.65 4.06
4637 4974 1.077501 AACCCGCCTCATGGTCATG 60.078 57.895 4.67 4.67 40.09 3.07
4638 4975 1.224592 GAACCCGCCTCATGGTCAT 59.775 57.895 0.00 0.00 32.40 3.06
4639 4976 2.668632 GAACCCGCCTCATGGTCA 59.331 61.111 0.00 0.00 32.40 4.02
4640 4977 2.124695 GGAACCCGCCTCATGGTC 60.125 66.667 0.00 0.00 32.40 4.02
4641 4978 2.610859 AGGAACCCGCCTCATGGT 60.611 61.111 0.00 0.00 30.76 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.