Multiple sequence alignment - TraesCS3D01G099800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G099800 chr3D 100.000 2738 0 0 1 2738 51687947 51685210 0.000000e+00 5057
1 TraesCS3D01G099800 chr3B 90.208 2308 124 44 511 2738 82630585 82628300 0.000000e+00 2916
2 TraesCS3D01G099800 chr3A 92.585 1497 89 9 941 2429 64285579 64284097 0.000000e+00 2130
3 TraesCS3D01G099800 chr3A 89.339 469 21 12 491 935 64286098 64285635 1.840000e-156 562
4 TraesCS3D01G099800 chr3A 92.920 226 11 3 2508 2729 64284097 64283873 9.460000e-85 324
5 TraesCS3D01G099800 chr5A 79.976 1633 199 62 953 2519 504955196 504956766 0.000000e+00 1086
6 TraesCS3D01G099800 chr5B 80.396 1112 148 34 953 2021 479714974 479716058 0.000000e+00 782
7 TraesCS3D01G099800 chr5B 81.470 313 30 16 631 935 472745955 472745663 5.900000e-57 231
8 TraesCS3D01G099800 chr5B 79.191 346 48 16 2182 2519 479716273 479716602 4.590000e-53 219
9 TraesCS3D01G099800 chrUn 94.512 492 26 1 2 493 96352733 96353223 0.000000e+00 758
10 TraesCS3D01G099800 chrUn 86.441 236 31 1 700 935 358922962 358922728 9.730000e-65 257
11 TraesCS3D01G099800 chrUn 85.088 114 9 6 626 735 1064515 1064406 2.880000e-20 110
12 TraesCS3D01G099800 chr1D 94.512 492 26 1 1 492 92206709 92207199 0.000000e+00 758
13 TraesCS3D01G099800 chr1D 94.297 491 28 0 2 492 61444822 61445312 0.000000e+00 752
14 TraesCS3D01G099800 chr1D 83.453 417 47 11 511 914 228799281 228799688 4.310000e-98 368
15 TraesCS3D01G099800 chr1D 84.953 319 33 9 626 935 452340869 452341181 2.650000e-80 309
16 TraesCS3D01G099800 chr1D 79.827 347 42 16 493 831 406559625 406559299 7.630000e-56 228
17 TraesCS3D01G099800 chr1D 79.147 211 26 7 622 832 453639678 453639870 2.210000e-26 130
18 TraesCS3D01G099800 chr5D 94.094 491 28 1 2 492 223519985 223520474 0.000000e+00 745
19 TraesCS3D01G099800 chr5D 93.293 492 31 2 2 492 486531826 486532316 0.000000e+00 725
20 TraesCS3D01G099800 chr5D 79.723 937 128 25 1154 2053 399327902 399328813 2.990000e-174 621
21 TraesCS3D01G099800 chr5D 84.861 251 32 4 953 1200 399327652 399327899 5.850000e-62 248
22 TraesCS3D01G099800 chr2D 93.852 488 30 0 2 489 118248859 118249346 0.000000e+00 736
23 TraesCS3D01G099800 chr2D 93.522 494 29 1 2 492 477632487 477632980 0.000000e+00 732
24 TraesCS3D01G099800 chr2D 93.293 492 31 2 2 493 39476838 39477327 0.000000e+00 725
25 TraesCS3D01G099800 chr6D 93.173 498 29 2 2 494 115651117 115651614 0.000000e+00 726
26 TraesCS3D01G099800 chr7B 85.960 349 36 11 600 936 26739076 26739423 7.210000e-96 361
27 TraesCS3D01G099800 chr1A 84.211 342 42 10 600 935 547241610 547241945 3.400000e-84 322
28 TraesCS3D01G099800 chr1A 83.626 342 45 9 600 935 547253716 547254052 7.360000e-81 311
29 TraesCS3D01G099800 chr1A 83.333 342 46 9 600 935 547219719 547220055 3.430000e-79 305
30 TraesCS3D01G099800 chr6B 89.796 245 22 3 689 932 505247958 505248200 7.360000e-81 311
31 TraesCS3D01G099800 chr1B 81.957 327 37 13 511 831 546686675 546686365 9.730000e-65 257
32 TraesCS3D01G099800 chr7A 77.945 399 43 27 493 851 685907906 685907513 9.940000e-50 207
33 TraesCS3D01G099800 chr7D 77.094 406 56 22 537 935 591455704 591455329 1.660000e-47 200
34 TraesCS3D01G099800 chr2B 78.107 338 36 15 515 832 503435252 503434933 2.170000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G099800 chr3D 51685210 51687947 2737 True 5057.000000 5057 100.000000 1 2738 1 chr3D.!!$R1 2737
1 TraesCS3D01G099800 chr3B 82628300 82630585 2285 True 2916.000000 2916 90.208000 511 2738 1 chr3B.!!$R1 2227
2 TraesCS3D01G099800 chr3A 64283873 64286098 2225 True 1005.333333 2130 91.614667 491 2729 3 chr3A.!!$R1 2238
3 TraesCS3D01G099800 chr5A 504955196 504956766 1570 False 1086.000000 1086 79.976000 953 2519 1 chr5A.!!$F1 1566
4 TraesCS3D01G099800 chr5B 479714974 479716602 1628 False 500.500000 782 79.793500 953 2519 2 chr5B.!!$F1 1566
5 TraesCS3D01G099800 chr5D 399327652 399328813 1161 False 434.500000 621 82.292000 953 2053 2 chr5D.!!$F3 1100

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 204 0.03213 GCTAGGCGCTGCACTGTATA 59.968 55.0 7.64 0.0 35.14 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2166 1.137404 GCATGTCATGAACACCGGC 59.863 57.895 17.24 0.56 41.75 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 5.668558 ACAGAATAAACTGTCCGTGAAAC 57.331 39.130 0.00 0.00 46.36 2.78
34 35 5.365619 ACAGAATAAACTGTCCGTGAAACT 58.634 37.500 0.00 0.00 46.36 2.66
35 36 6.518493 ACAGAATAAACTGTCCGTGAAACTA 58.482 36.000 0.00 0.00 46.36 2.24
36 37 7.159372 ACAGAATAAACTGTCCGTGAAACTAT 58.841 34.615 0.00 0.00 46.36 2.12
37 38 7.660208 ACAGAATAAACTGTCCGTGAAACTATT 59.340 33.333 0.00 0.00 46.36 1.73
38 39 8.504005 CAGAATAAACTGTCCGTGAAACTATTT 58.496 33.333 0.00 0.00 33.73 1.40
39 40 8.718734 AGAATAAACTGTCCGTGAAACTATTTC 58.281 33.333 0.00 0.00 40.08 2.17
40 41 7.972832 ATAAACTGTCCGTGAAACTATTTCA 57.027 32.000 0.00 0.00 46.68 2.69
49 50 3.734463 TGAAACTATTTCACGTGGCTGA 58.266 40.909 17.00 0.00 44.21 4.26
50 51 4.130857 TGAAACTATTTCACGTGGCTGAA 58.869 39.130 17.00 6.39 44.21 3.02
51 52 4.759693 TGAAACTATTTCACGTGGCTGAAT 59.240 37.500 17.00 12.89 44.21 2.57
52 53 5.240623 TGAAACTATTTCACGTGGCTGAATT 59.759 36.000 17.00 3.47 44.21 2.17
53 54 5.705609 AACTATTTCACGTGGCTGAATTT 57.294 34.783 17.00 0.00 30.19 1.82
54 55 5.705609 ACTATTTCACGTGGCTGAATTTT 57.294 34.783 17.00 0.26 30.19 1.82
55 56 6.084326 ACTATTTCACGTGGCTGAATTTTT 57.916 33.333 17.00 0.00 30.19 1.94
69 70 4.220413 TTTTTGTGTGACGCCCGA 57.780 50.000 0.00 0.00 0.00 5.14
70 71 1.722677 TTTTTGTGTGACGCCCGAC 59.277 52.632 0.00 0.00 0.00 4.79
71 72 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
72 73 0.816018 TTTTGTGTGACGCCCGACAT 60.816 50.000 0.00 0.00 0.00 3.06
73 74 1.502990 TTTGTGTGACGCCCGACATG 61.503 55.000 0.00 0.00 0.00 3.21
74 75 2.048597 GTGTGACGCCCGACATGA 60.049 61.111 0.00 0.00 0.00 3.07
75 76 1.666553 GTGTGACGCCCGACATGAA 60.667 57.895 0.00 0.00 0.00 2.57
76 77 1.374125 TGTGACGCCCGACATGAAG 60.374 57.895 0.00 0.00 0.00 3.02
77 78 2.100631 GTGACGCCCGACATGAAGG 61.101 63.158 0.00 1.50 0.00 3.46
78 79 3.195698 GACGCCCGACATGAAGGC 61.196 66.667 13.24 13.24 43.53 4.35
84 85 2.741985 CGACATGAAGGCGCCACA 60.742 61.111 31.54 27.20 45.03 4.17
85 86 2.870372 GACATGAAGGCGCCACAC 59.130 61.111 31.54 19.20 0.00 3.82
86 87 1.672356 GACATGAAGGCGCCACACT 60.672 57.895 31.54 16.05 0.00 3.55
87 88 0.391130 GACATGAAGGCGCCACACTA 60.391 55.000 31.54 10.42 0.00 2.74
88 89 0.673644 ACATGAAGGCGCCACACTAC 60.674 55.000 31.54 12.91 0.00 2.73
89 90 0.673333 CATGAAGGCGCCACACTACA 60.673 55.000 31.54 18.06 0.00 2.74
90 91 0.673644 ATGAAGGCGCCACACTACAC 60.674 55.000 31.54 10.39 0.00 2.90
91 92 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
92 93 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
93 94 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
94 95 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
95 96 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
96 97 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
97 98 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
98 99 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
99 100 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
100 101 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
101 102 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
102 103 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
103 104 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
104 105 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
105 106 0.034756 TACACTGTGCAACGCCTCAT 59.965 50.000 7.90 0.00 42.39 2.90
106 107 0.034756 ACACTGTGCAACGCCTCATA 59.965 50.000 7.90 0.00 42.39 2.15
107 108 0.723414 CACTGTGCAACGCCTCATAG 59.277 55.000 0.00 0.00 42.39 2.23
108 109 0.608130 ACTGTGCAACGCCTCATAGA 59.392 50.000 0.00 0.00 42.39 1.98
109 110 1.208052 ACTGTGCAACGCCTCATAGAT 59.792 47.619 0.00 0.00 42.39 1.98
110 111 2.430694 ACTGTGCAACGCCTCATAGATA 59.569 45.455 0.00 0.00 42.39 1.98
111 112 3.055591 CTGTGCAACGCCTCATAGATAG 58.944 50.000 0.00 0.00 42.39 2.08
112 113 2.224042 TGTGCAACGCCTCATAGATAGG 60.224 50.000 0.00 0.00 42.39 2.57
120 121 3.495670 CCTCATAGATAGGCGCTACAC 57.504 52.381 7.64 0.00 0.00 2.90
144 145 4.641645 CCAGCGTTGCACCCCAGA 62.642 66.667 0.00 0.00 0.00 3.86
145 146 3.357079 CAGCGTTGCACCCCAGAC 61.357 66.667 0.00 0.00 0.00 3.51
146 147 3.560251 AGCGTTGCACCCCAGACT 61.560 61.111 0.00 0.00 0.00 3.24
147 148 3.357079 GCGTTGCACCCCAGACTG 61.357 66.667 0.00 0.00 0.00 3.51
148 149 3.357079 CGTTGCACCCCAGACTGC 61.357 66.667 0.00 0.00 0.00 4.40
149 150 2.985847 GTTGCACCCCAGACTGCC 60.986 66.667 0.00 0.00 31.97 4.85
150 151 3.177884 TTGCACCCCAGACTGCCT 61.178 61.111 0.00 0.00 31.97 4.75
151 152 1.845664 TTGCACCCCAGACTGCCTA 60.846 57.895 0.00 0.00 31.97 3.93
152 153 1.422977 TTGCACCCCAGACTGCCTAA 61.423 55.000 0.00 0.00 31.97 2.69
153 154 1.378762 GCACCCCAGACTGCCTAAA 59.621 57.895 0.00 0.00 0.00 1.85
154 155 0.251165 GCACCCCAGACTGCCTAAAA 60.251 55.000 0.00 0.00 0.00 1.52
155 156 1.821666 GCACCCCAGACTGCCTAAAAA 60.822 52.381 0.00 0.00 0.00 1.94
156 157 2.807676 CACCCCAGACTGCCTAAAAAT 58.192 47.619 0.00 0.00 0.00 1.82
157 158 3.165071 CACCCCAGACTGCCTAAAAATT 58.835 45.455 0.00 0.00 0.00 1.82
158 159 3.056607 CACCCCAGACTGCCTAAAAATTG 60.057 47.826 0.00 0.00 0.00 2.32
159 160 3.165071 CCCCAGACTGCCTAAAAATTGT 58.835 45.455 0.00 0.00 0.00 2.71
160 161 3.578282 CCCCAGACTGCCTAAAAATTGTT 59.422 43.478 0.00 0.00 0.00 2.83
161 162 4.770010 CCCCAGACTGCCTAAAAATTGTTA 59.230 41.667 0.00 0.00 0.00 2.41
162 163 5.245075 CCCCAGACTGCCTAAAAATTGTTAA 59.755 40.000 0.00 0.00 0.00 2.01
163 164 6.389906 CCCAGACTGCCTAAAAATTGTTAAG 58.610 40.000 0.00 0.00 0.00 1.85
164 165 6.015434 CCCAGACTGCCTAAAAATTGTTAAGT 60.015 38.462 0.00 0.00 0.00 2.24
165 166 7.084486 CCAGACTGCCTAAAAATTGTTAAGTC 58.916 38.462 9.39 9.39 33.38 3.01
166 167 7.255451 CCAGACTGCCTAAAAATTGTTAAGTCA 60.255 37.037 16.06 3.84 35.18 3.41
167 168 8.299570 CAGACTGCCTAAAAATTGTTAAGTCAT 58.700 33.333 16.06 4.42 35.18 3.06
168 169 8.860088 AGACTGCCTAAAAATTGTTAAGTCATT 58.140 29.630 16.06 0.69 35.18 2.57
169 170 8.816640 ACTGCCTAAAAATTGTTAAGTCATTG 57.183 30.769 0.00 0.00 0.00 2.82
170 171 8.421002 ACTGCCTAAAAATTGTTAAGTCATTGT 58.579 29.630 0.00 0.00 0.00 2.71
171 172 8.586570 TGCCTAAAAATTGTTAAGTCATTGTG 57.413 30.769 0.00 0.00 0.00 3.33
172 173 7.170658 TGCCTAAAAATTGTTAAGTCATTGTGC 59.829 33.333 0.00 0.00 0.00 4.57
173 174 7.170658 GCCTAAAAATTGTTAAGTCATTGTGCA 59.829 33.333 0.00 0.00 0.00 4.57
174 175 8.702438 CCTAAAAATTGTTAAGTCATTGTGCAG 58.298 33.333 0.00 0.00 0.00 4.41
175 176 9.462174 CTAAAAATTGTTAAGTCATTGTGCAGA 57.538 29.630 0.00 0.00 0.00 4.26
176 177 7.935338 AAAATTGTTAAGTCATTGTGCAGAG 57.065 32.000 0.00 0.00 0.00 3.35
177 178 4.488126 TTGTTAAGTCATTGTGCAGAGC 57.512 40.909 0.00 0.00 0.00 4.09
178 179 2.813754 TGTTAAGTCATTGTGCAGAGCC 59.186 45.455 0.00 0.00 0.00 4.70
179 180 3.077359 GTTAAGTCATTGTGCAGAGCCT 58.923 45.455 0.00 0.00 0.00 4.58
180 181 4.253685 GTTAAGTCATTGTGCAGAGCCTA 58.746 43.478 0.00 0.00 0.00 3.93
181 182 3.423539 AAGTCATTGTGCAGAGCCTAA 57.576 42.857 0.00 0.00 0.00 2.69
182 183 2.983229 AGTCATTGTGCAGAGCCTAAG 58.017 47.619 0.00 0.00 0.00 2.18
183 184 2.568956 AGTCATTGTGCAGAGCCTAAGA 59.431 45.455 0.00 0.00 0.00 2.10
184 185 2.935201 GTCATTGTGCAGAGCCTAAGAG 59.065 50.000 0.00 0.00 0.00 2.85
185 186 1.669779 CATTGTGCAGAGCCTAAGAGC 59.330 52.381 0.00 0.00 0.00 4.09
187 188 1.852633 TGTGCAGAGCCTAAGAGCTA 58.147 50.000 0.00 0.00 45.15 3.32
188 189 1.753649 TGTGCAGAGCCTAAGAGCTAG 59.246 52.381 0.00 0.00 45.15 3.42
201 202 2.184322 GCTAGGCGCTGCACTGTA 59.816 61.111 7.64 0.00 35.14 2.74
202 203 1.227380 GCTAGGCGCTGCACTGTAT 60.227 57.895 7.64 0.00 35.14 2.29
203 204 0.032130 GCTAGGCGCTGCACTGTATA 59.968 55.000 7.64 0.00 35.14 1.47
204 205 1.932604 GCTAGGCGCTGCACTGTATAG 60.933 57.143 7.64 0.00 35.14 1.31
205 206 1.338337 CTAGGCGCTGCACTGTATAGT 59.662 52.381 7.64 0.00 37.75 2.12
214 215 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
215 216 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
216 217 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
217 218 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
229 230 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
230 231 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
231 232 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
232 233 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
233 234 4.756458 GCTCTCAGGCGCTGCACT 62.756 66.667 7.64 0.00 0.00 4.40
234 235 2.888111 CTCTCAGGCGCTGCACTA 59.112 61.111 7.64 0.00 0.00 2.74
235 236 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
236 237 1.943116 CTCTCAGGCGCTGCACTAGT 61.943 60.000 7.64 0.00 0.00 2.57
237 238 1.808799 CTCAGGCGCTGCACTAGTG 60.809 63.158 18.93 18.93 39.95 2.74
238 239 2.816958 CAGGCGCTGCACTAGTGG 60.817 66.667 23.95 9.71 37.39 4.00
239 240 3.314331 AGGCGCTGCACTAGTGGT 61.314 61.111 23.95 0.00 37.39 4.16
240 241 2.358737 GGCGCTGCACTAGTGGTT 60.359 61.111 23.95 0.00 37.39 3.67
241 242 2.680913 GGCGCTGCACTAGTGGTTG 61.681 63.158 23.95 6.99 37.39 3.77
242 243 2.863153 CGCTGCACTAGTGGTTGC 59.137 61.111 23.95 10.41 33.19 4.17
243 244 1.960763 CGCTGCACTAGTGGTTGCA 60.961 57.895 23.95 14.47 33.19 4.08
244 245 1.576421 GCTGCACTAGTGGTTGCAC 59.424 57.895 23.95 6.97 32.03 4.57
245 246 0.886490 GCTGCACTAGTGGTTGCACT 60.886 55.000 23.95 0.00 39.08 4.40
246 247 1.608025 GCTGCACTAGTGGTTGCACTA 60.608 52.381 23.95 0.00 36.68 2.74
247 248 2.069273 CTGCACTAGTGGTTGCACTAC 58.931 52.381 23.95 4.83 36.68 2.73
248 249 1.414550 TGCACTAGTGGTTGCACTACA 59.585 47.619 23.95 7.41 36.68 2.74
249 250 2.158885 TGCACTAGTGGTTGCACTACAA 60.159 45.455 23.95 0.00 36.68 2.41
250 251 2.875933 GCACTAGTGGTTGCACTACAAA 59.124 45.455 23.95 0.00 40.82 2.83
251 252 3.314080 GCACTAGTGGTTGCACTACAAAA 59.686 43.478 23.95 0.00 40.82 2.44
252 253 4.023193 GCACTAGTGGTTGCACTACAAAAT 60.023 41.667 23.95 0.00 40.82 1.82
253 254 5.180492 GCACTAGTGGTTGCACTACAAAATA 59.820 40.000 23.95 0.00 40.82 1.40
254 255 6.293735 GCACTAGTGGTTGCACTACAAAATAA 60.294 38.462 23.95 0.00 40.82 1.40
255 256 7.644490 CACTAGTGGTTGCACTACAAAATAAA 58.356 34.615 15.49 0.00 40.82 1.40
256 257 7.803189 CACTAGTGGTTGCACTACAAAATAAAG 59.197 37.037 15.49 0.00 40.82 1.85
257 258 5.528870 AGTGGTTGCACTACAAAATAAAGC 58.471 37.500 0.00 0.00 40.82 3.51
258 259 5.068460 AGTGGTTGCACTACAAAATAAAGCA 59.932 36.000 0.00 0.00 40.82 3.91
259 260 5.751028 GTGGTTGCACTACAAAATAAAGCAA 59.249 36.000 0.00 0.00 40.82 3.91
260 261 6.423604 GTGGTTGCACTACAAAATAAAGCAAT 59.576 34.615 0.00 0.00 41.71 3.56
261 262 6.644592 TGGTTGCACTACAAAATAAAGCAATC 59.355 34.615 0.00 0.00 41.71 2.67
262 263 6.644592 GGTTGCACTACAAAATAAAGCAATCA 59.355 34.615 0.00 0.00 41.71 2.57
263 264 7.359181 GGTTGCACTACAAAATAAAGCAATCAC 60.359 37.037 0.00 0.00 41.71 3.06
264 265 6.980593 TGCACTACAAAATAAAGCAATCACT 58.019 32.000 0.00 0.00 0.00 3.41
265 266 8.105097 TGCACTACAAAATAAAGCAATCACTA 57.895 30.769 0.00 0.00 0.00 2.74
266 267 8.236586 TGCACTACAAAATAAAGCAATCACTAG 58.763 33.333 0.00 0.00 0.00 2.57
267 268 8.237267 GCACTACAAAATAAAGCAATCACTAGT 58.763 33.333 0.00 0.00 0.00 2.57
268 269 9.546909 CACTACAAAATAAAGCAATCACTAGTG 57.453 33.333 17.17 17.17 0.00 2.74
269 270 8.237267 ACTACAAAATAAAGCAATCACTAGTGC 58.763 33.333 18.45 6.47 46.90 4.40
274 275 3.296516 GCAATCACTAGTGCAACGC 57.703 52.632 18.45 13.24 45.84 4.84
275 276 0.179189 GCAATCACTAGTGCAACGCC 60.179 55.000 18.45 0.67 45.84 5.68
276 277 1.442769 CAATCACTAGTGCAACGCCT 58.557 50.000 18.45 0.00 45.86 5.52
277 278 2.616960 CAATCACTAGTGCAACGCCTA 58.383 47.619 18.45 0.00 45.86 3.93
278 279 2.586258 ATCACTAGTGCAACGCCTAG 57.414 50.000 18.45 7.38 45.86 3.02
279 280 1.541379 TCACTAGTGCAACGCCTAGA 58.459 50.000 18.45 0.00 45.86 2.43
280 281 1.890489 TCACTAGTGCAACGCCTAGAA 59.110 47.619 18.45 0.00 45.86 2.10
281 282 2.094700 TCACTAGTGCAACGCCTAGAAG 60.095 50.000 18.45 7.62 45.86 2.85
282 283 1.281899 CTAGTGCAACGCCTAGAAGC 58.718 55.000 3.56 0.00 45.86 3.86
283 284 0.895530 TAGTGCAACGCCTAGAAGCT 59.104 50.000 0.00 0.00 45.86 3.74
284 285 0.895530 AGTGCAACGCCTAGAAGCTA 59.104 50.000 0.00 0.00 45.86 3.32
285 286 1.134965 AGTGCAACGCCTAGAAGCTAG 60.135 52.381 0.00 0.00 45.86 3.42
286 287 0.175760 TGCAACGCCTAGAAGCTAGG 59.824 55.000 14.68 14.68 37.75 3.02
298 299 3.494336 GCTAGGCGCTGCACACTG 61.494 66.667 7.64 0.00 35.14 3.66
299 300 2.262603 CTAGGCGCTGCACACTGA 59.737 61.111 7.64 0.00 0.00 3.41
300 301 2.048222 TAGGCGCTGCACACTGAC 60.048 61.111 7.64 0.00 0.00 3.51
301 302 2.498291 CTAGGCGCTGCACACTGACT 62.498 60.000 7.64 0.00 0.00 3.41
302 303 2.099652 TAGGCGCTGCACACTGACTT 62.100 55.000 7.64 0.00 0.00 3.01
303 304 1.667830 GGCGCTGCACACTGACTTA 60.668 57.895 7.64 0.00 0.00 2.24
304 305 1.630244 GGCGCTGCACACTGACTTAG 61.630 60.000 7.64 0.00 0.00 2.18
305 306 0.946221 GCGCTGCACACTGACTTAGT 60.946 55.000 0.00 0.00 41.36 2.24
306 307 1.668919 GCGCTGCACACTGACTTAGTA 60.669 52.381 0.00 0.00 37.60 1.82
307 308 2.672714 CGCTGCACACTGACTTAGTAA 58.327 47.619 0.00 0.00 37.60 2.24
308 309 3.254060 CGCTGCACACTGACTTAGTAAT 58.746 45.455 0.00 0.00 37.60 1.89
309 310 3.679980 CGCTGCACACTGACTTAGTAATT 59.320 43.478 0.00 0.00 37.60 1.40
310 311 4.152402 CGCTGCACACTGACTTAGTAATTT 59.848 41.667 0.00 0.00 37.60 1.82
311 312 5.334105 CGCTGCACACTGACTTAGTAATTTT 60.334 40.000 0.00 0.00 37.60 1.82
312 313 6.080406 GCTGCACACTGACTTAGTAATTTTC 58.920 40.000 0.00 0.00 37.60 2.29
313 314 6.223138 TGCACACTGACTTAGTAATTTTCG 57.777 37.500 0.00 0.00 37.60 3.46
314 315 5.178623 TGCACACTGACTTAGTAATTTTCGG 59.821 40.000 0.00 0.00 37.60 4.30
315 316 5.407387 GCACACTGACTTAGTAATTTTCGGA 59.593 40.000 0.00 0.00 37.60 4.55
316 317 6.092259 GCACACTGACTTAGTAATTTTCGGAT 59.908 38.462 0.00 0.00 37.60 4.18
317 318 7.674240 GCACACTGACTTAGTAATTTTCGGATC 60.674 40.741 0.00 0.00 37.60 3.36
318 319 7.330946 CACACTGACTTAGTAATTTTCGGATCA 59.669 37.037 0.00 0.00 37.60 2.92
319 320 7.331193 ACACTGACTTAGTAATTTTCGGATCAC 59.669 37.037 0.00 0.00 37.60 3.06
320 321 7.330946 CACTGACTTAGTAATTTTCGGATCACA 59.669 37.037 0.00 0.00 37.60 3.58
321 322 7.331193 ACTGACTTAGTAATTTTCGGATCACAC 59.669 37.037 0.00 0.00 38.04 3.82
322 323 6.309494 TGACTTAGTAATTTTCGGATCACACG 59.691 38.462 0.00 0.00 0.00 4.49
323 324 5.579511 ACTTAGTAATTTTCGGATCACACGG 59.420 40.000 0.00 0.00 0.00 4.94
324 325 4.196626 AGTAATTTTCGGATCACACGGA 57.803 40.909 0.00 0.00 0.00 4.69
325 326 4.766375 AGTAATTTTCGGATCACACGGAT 58.234 39.130 0.00 0.00 39.53 4.18
326 327 4.570772 AGTAATTTTCGGATCACACGGATG 59.429 41.667 0.00 0.00 36.00 3.51
327 328 1.083489 TTTTCGGATCACACGGATGC 58.917 50.000 0.00 0.00 40.66 3.91
330 331 3.706140 GGATCACACGGATGCGAC 58.294 61.111 15.49 0.00 36.00 5.19
331 332 2.230940 GGATCACACGGATGCGACG 61.231 63.158 15.49 6.43 36.00 5.12
332 333 2.860628 GATCACACGGATGCGACGC 61.861 63.158 15.49 14.19 36.00 5.19
333 334 3.356639 ATCACACGGATGCGACGCT 62.357 57.895 22.08 6.44 34.06 5.07
334 335 3.842126 CACACGGATGCGACGCTG 61.842 66.667 22.08 12.79 34.00 5.18
360 361 2.699251 CGTGTAGCGCCTATATGTGA 57.301 50.000 2.29 0.00 0.00 3.58
361 362 2.585845 CGTGTAGCGCCTATATGTGAG 58.414 52.381 2.29 0.00 0.00 3.51
362 363 2.668556 CGTGTAGCGCCTATATGTGAGG 60.669 54.545 2.29 0.00 37.12 3.86
369 370 2.238942 CCTATATGTGAGGCGTTGCA 57.761 50.000 0.00 0.00 0.00 4.08
370 371 1.867233 CCTATATGTGAGGCGTTGCAC 59.133 52.381 0.00 0.00 35.63 4.57
372 373 1.372582 ATATGTGAGGCGTTGCACAG 58.627 50.000 6.99 0.00 46.83 3.66
373 374 0.034756 TATGTGAGGCGTTGCACAGT 59.965 50.000 6.99 0.16 46.83 3.55
374 375 1.509644 ATGTGAGGCGTTGCACAGTG 61.510 55.000 6.99 0.00 46.83 3.66
375 376 2.180204 GTGAGGCGTTGCACAGTGT 61.180 57.895 1.61 0.00 35.19 3.55
376 377 0.878523 GTGAGGCGTTGCACAGTGTA 60.879 55.000 1.61 0.00 35.19 2.90
377 378 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
378 379 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
379 380 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
380 381 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
382 383 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
383 384 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
384 385 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
385 386 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
386 387 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
387 388 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
388 389 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
389 390 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
390 391 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
391 392 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
392 393 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
393 394 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
394 395 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
395 396 4.228567 TGTGGCGCCTTCGTGTCA 62.229 61.111 29.70 11.87 38.14 3.58
396 397 3.414700 GTGGCGCCTTCGTGTCAG 61.415 66.667 29.70 0.00 38.14 3.51
397 398 4.680237 TGGCGCCTTCGTGTCAGG 62.680 66.667 29.70 0.00 38.14 3.86
402 403 2.338620 CCTTCGTGTCAGGCGTCA 59.661 61.111 0.00 0.00 0.00 4.35
403 404 2.022129 CCTTCGTGTCAGGCGTCAC 61.022 63.158 0.00 0.00 0.00 3.67
404 405 1.299850 CTTCGTGTCAGGCGTCACA 60.300 57.895 0.00 0.00 34.66 3.58
405 406 1.548973 CTTCGTGTCAGGCGTCACAC 61.549 60.000 3.21 3.21 39.70 3.82
406 407 2.279186 CGTGTCAGGCGTCACACA 60.279 61.111 13.96 0.00 42.67 3.72
407 408 1.880796 CGTGTCAGGCGTCACACAA 60.881 57.895 13.96 0.00 42.67 3.33
408 409 1.425267 CGTGTCAGGCGTCACACAAA 61.425 55.000 13.96 0.00 42.67 2.83
409 410 0.730265 GTGTCAGGCGTCACACAAAA 59.270 50.000 8.78 0.00 42.20 2.44
410 411 1.131504 GTGTCAGGCGTCACACAAAAA 59.868 47.619 8.78 0.00 42.20 1.94
411 412 1.400142 TGTCAGGCGTCACACAAAAAG 59.600 47.619 0.00 0.00 0.00 2.27
412 413 1.021202 TCAGGCGTCACACAAAAAGG 58.979 50.000 0.00 0.00 0.00 3.11
413 414 0.594796 CAGGCGTCACACAAAAAGGC 60.595 55.000 0.00 0.00 0.00 4.35
414 415 1.299850 GGCGTCACACAAAAAGGCC 60.300 57.895 0.00 0.00 36.86 5.19
415 416 1.435515 GCGTCACACAAAAAGGCCA 59.564 52.632 5.01 0.00 0.00 5.36
416 417 0.594796 GCGTCACACAAAAAGGCCAG 60.595 55.000 5.01 0.00 0.00 4.85
417 418 0.594796 CGTCACACAAAAAGGCCAGC 60.595 55.000 5.01 0.00 0.00 4.85
418 419 0.249447 GTCACACAAAAAGGCCAGCC 60.249 55.000 5.01 0.00 0.00 4.85
419 420 1.300080 CACACAAAAAGGCCAGCCG 60.300 57.895 5.01 0.00 41.95 5.52
420 421 2.356194 CACAAAAAGGCCAGCCGC 60.356 61.111 5.01 0.00 41.95 6.53
421 422 3.977244 ACAAAAAGGCCAGCCGCG 61.977 61.111 5.01 0.00 41.95 6.46
422 423 3.977244 CAAAAAGGCCAGCCGCGT 61.977 61.111 5.01 0.00 41.95 6.01
423 424 3.977244 AAAAAGGCCAGCCGCGTG 61.977 61.111 5.01 0.00 41.95 5.34
424 425 4.947147 AAAAGGCCAGCCGCGTGA 62.947 61.111 5.01 0.00 41.95 4.35
425 426 4.947147 AAAGGCCAGCCGCGTGAA 62.947 61.111 5.01 0.00 41.95 3.18
426 427 4.947147 AAGGCCAGCCGCGTGAAA 62.947 61.111 5.01 0.00 41.95 2.69
427 428 4.722700 AGGCCAGCCGCGTGAAAT 62.723 61.111 5.01 0.00 41.95 2.17
428 429 2.813226 AAGGCCAGCCGCGTGAAATA 62.813 55.000 5.01 0.00 41.95 1.40
429 430 2.709475 GCCAGCCGCGTGAAATAG 59.291 61.111 4.92 0.00 0.00 1.73
430 431 2.106683 GCCAGCCGCGTGAAATAGT 61.107 57.895 4.92 0.00 0.00 2.12
431 432 1.644786 GCCAGCCGCGTGAAATAGTT 61.645 55.000 4.92 0.00 0.00 2.24
432 433 0.802494 CCAGCCGCGTGAAATAGTTT 59.198 50.000 4.92 0.00 0.00 2.66
433 434 1.202031 CCAGCCGCGTGAAATAGTTTC 60.202 52.381 4.92 0.00 40.08 2.78
434 435 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
448 449 9.897744 TGAAATAGTTTCACAGACATTTCATTC 57.102 29.630 1.24 0.00 44.21 2.67
450 451 9.903682 AAATAGTTTCACAGACATTTCATTCTG 57.096 29.630 0.00 0.00 44.19 3.02
460 461 8.981724 CAGACATTTCATTCTGTGATTTGATT 57.018 30.769 0.00 0.00 36.54 2.57
461 462 9.419297 CAGACATTTCATTCTGTGATTTGATTT 57.581 29.630 0.00 0.00 36.54 2.17
462 463 9.991906 AGACATTTCATTCTGTGATTTGATTTT 57.008 25.926 0.00 0.00 36.54 1.82
464 465 9.550406 ACATTTCATTCTGTGATTTGATTTTGT 57.450 25.926 0.00 0.00 36.54 2.83
466 467 8.592105 TTTCATTCTGTGATTTGATTTTGTCC 57.408 30.769 0.00 0.00 36.54 4.02
467 468 7.287512 TCATTCTGTGATTTGATTTTGTCCA 57.712 32.000 0.00 0.00 0.00 4.02
468 469 7.898918 TCATTCTGTGATTTGATTTTGTCCAT 58.101 30.769 0.00 0.00 0.00 3.41
469 470 9.022884 TCATTCTGTGATTTGATTTTGTCCATA 57.977 29.630 0.00 0.00 0.00 2.74
470 471 9.297586 CATTCTGTGATTTGATTTTGTCCATAG 57.702 33.333 0.00 0.00 0.00 2.23
471 472 7.395190 TCTGTGATTTGATTTTGTCCATAGG 57.605 36.000 0.00 0.00 0.00 2.57
472 473 6.947733 TCTGTGATTTGATTTTGTCCATAGGT 59.052 34.615 0.00 0.00 0.00 3.08
473 474 7.121168 TCTGTGATTTGATTTTGTCCATAGGTC 59.879 37.037 0.00 0.00 0.00 3.85
474 475 6.718912 TGTGATTTGATTTTGTCCATAGGTCA 59.281 34.615 0.00 0.00 0.00 4.02
475 476 7.232330 TGTGATTTGATTTTGTCCATAGGTCAA 59.768 33.333 0.00 0.00 0.00 3.18
476 477 8.087750 GTGATTTGATTTTGTCCATAGGTCAAA 58.912 33.333 4.70 4.70 38.50 2.69
477 478 8.814931 TGATTTGATTTTGTCCATAGGTCAAAT 58.185 29.630 9.41 9.41 43.48 2.32
478 479 9.657419 GATTTGATTTTGTCCATAGGTCAAATT 57.343 29.630 8.78 6.20 41.90 1.82
480 481 8.830201 TTGATTTTGTCCATAGGTCAAATTTG 57.170 30.769 12.15 12.15 39.54 2.32
481 482 7.961351 TGATTTTGTCCATAGGTCAAATTTGT 58.039 30.769 17.47 1.67 39.54 2.83
482 483 8.087750 TGATTTTGTCCATAGGTCAAATTTGTC 58.912 33.333 17.47 12.07 39.54 3.18
483 484 6.968263 TTTGTCCATAGGTCAAATTTGTCA 57.032 33.333 17.47 0.00 36.24 3.58
484 485 6.968263 TTGTCCATAGGTCAAATTTGTCAA 57.032 33.333 17.47 5.31 28.82 3.18
485 486 7.537596 TTGTCCATAGGTCAAATTTGTCAAT 57.462 32.000 17.47 7.25 28.82 2.57
486 487 7.537596 TGTCCATAGGTCAAATTTGTCAATT 57.462 32.000 17.47 5.14 33.72 2.32
487 488 7.961351 TGTCCATAGGTCAAATTTGTCAATTT 58.039 30.769 17.47 2.98 42.37 1.82
488 489 8.428063 TGTCCATAGGTCAAATTTGTCAATTTT 58.572 29.630 17.47 0.59 40.09 1.82
489 490 8.711457 GTCCATAGGTCAAATTTGTCAATTTTG 58.289 33.333 17.47 19.85 40.09 2.44
642 671 2.125326 CGGCGACCAGTCCATAGGA 61.125 63.158 0.00 0.00 0.00 2.94
667 696 1.334384 GCCACCTCTCCTTCCTCCTC 61.334 65.000 0.00 0.00 0.00 3.71
730 760 6.320672 CCTCTTGCATCCTCTATTTGTTCAAT 59.679 38.462 0.00 0.00 0.00 2.57
750 780 6.985117 TCAATTTTTCTCCCTGATTTCTGTG 58.015 36.000 0.00 0.00 0.00 3.66
1026 1137 4.383173 AGCACATATTCAAGATCATCGCA 58.617 39.130 0.00 0.00 0.00 5.10
1033 1144 1.066645 TCAAGATCATCGCAGTGCTGT 60.067 47.619 14.33 0.00 0.00 4.40
1187 1300 2.682856 TGGTTGCTTGTGACTTCTGTTC 59.317 45.455 0.00 0.00 0.00 3.18
1341 1503 8.434392 TCCTAGTAACCTAATTCTCTCTCTCTC 58.566 40.741 0.00 0.00 0.00 3.20
1343 1505 9.490379 CTAGTAACCTAATTCTCTCTCTCTCTC 57.510 40.741 0.00 0.00 0.00 3.20
1344 1506 8.102484 AGTAACCTAATTCTCTCTCTCTCTCT 57.898 38.462 0.00 0.00 0.00 3.10
1345 1507 8.211629 AGTAACCTAATTCTCTCTCTCTCTCTC 58.788 40.741 0.00 0.00 0.00 3.20
1346 1508 6.831664 ACCTAATTCTCTCTCTCTCTCTCT 57.168 41.667 0.00 0.00 0.00 3.10
1347 1509 6.831976 ACCTAATTCTCTCTCTCTCTCTCTC 58.168 44.000 0.00 0.00 0.00 3.20
1348 1510 6.617371 ACCTAATTCTCTCTCTCTCTCTCTCT 59.383 42.308 0.00 0.00 0.00 3.10
1349 1511 7.158021 CCTAATTCTCTCTCTCTCTCTCTCTC 58.842 46.154 0.00 0.00 0.00 3.20
1350 1512 6.821616 AATTCTCTCTCTCTCTCTCTCTCT 57.178 41.667 0.00 0.00 0.00 3.10
1380 1542 0.744874 ATGCAGTCTCATTGCCATGC 59.255 50.000 0.00 0.00 40.81 4.06
1420 1582 8.521176 TCGCTAGAATTTACATCCTAGGTATTC 58.479 37.037 9.08 9.30 31.69 1.75
1458 1623 8.964420 ACACTTGTGCATTGTATATTTTACAC 57.036 30.769 0.10 0.00 0.00 2.90
1960 2166 5.880054 AGAATGGTTCATTAACAAGTCCG 57.120 39.130 0.00 0.00 34.76 4.79
1961 2167 4.156008 AGAATGGTTCATTAACAAGTCCGC 59.844 41.667 0.00 0.00 34.76 5.54
1963 2169 1.129811 GGTTCATTAACAAGTCCGCCG 59.870 52.381 0.00 0.00 37.34 6.46
1978 2184 1.137404 GCCGGTGTTCATGACATGC 59.863 57.895 10.76 0.00 41.10 4.06
1999 2206 3.614870 GCTTTGCTTTGTAACCATCTGGG 60.615 47.826 0.54 0.00 44.81 4.45
2058 2329 0.250684 TCGCCTTTGGTGATGCTTCA 60.251 50.000 0.00 0.00 37.29 3.02
2164 2449 5.360714 ACTTCTCAAATTCAGCAAAGTTCCA 59.639 36.000 0.00 0.00 0.00 3.53
2189 2474 4.681744 TCATTGGCACTTTGAAGTTTGAC 58.318 39.130 0.00 0.00 37.08 3.18
2252 2537 7.040755 CCGATACCATTATTGCTCCATGTTTAA 60.041 37.037 0.00 0.00 0.00 1.52
2414 2721 1.767681 GGCTGGTCCATCATCTTCTCT 59.232 52.381 0.00 0.00 34.01 3.10
2419 2726 2.106166 GGTCCATCATCTTCTCTGGCAT 59.894 50.000 0.00 0.00 0.00 4.40
2485 2795 1.823470 GTTGCACCTGTGACCTGCA 60.823 57.895 0.51 0.00 39.15 4.41
2486 2796 1.151221 TTGCACCTGTGACCTGCAT 59.849 52.632 0.51 0.00 40.52 3.96
2487 2797 1.174078 TTGCACCTGTGACCTGCATG 61.174 55.000 0.51 0.00 40.52 4.06
2488 2798 1.302752 GCACCTGTGACCTGCATGA 60.303 57.895 0.00 0.00 0.00 3.07
2489 2799 0.890542 GCACCTGTGACCTGCATGAA 60.891 55.000 0.00 0.00 0.00 2.57
2497 2807 0.532573 GACCTGCATGAAGTCCTCGA 59.467 55.000 0.00 0.00 0.00 4.04
2501 2811 0.390340 TGCATGAAGTCCTCGACAGC 60.390 55.000 0.00 0.00 34.60 4.40
2502 2812 1.086634 GCATGAAGTCCTCGACAGCC 61.087 60.000 0.00 0.00 34.60 4.85
2561 2927 9.036671 CATATATGTTGTGTGTTTCGTATACCA 57.963 33.333 4.43 0.00 0.00 3.25
2631 2999 5.344743 TGGTTTGGCATGTCAAAAGTTTA 57.655 34.783 26.06 8.92 38.21 2.01
2659 3027 5.897377 AATTATAGTGGAGTTTGTGGTGC 57.103 39.130 0.00 0.00 0.00 5.01
2665 3033 0.385390 GGAGTTTGTGGTGCTGTTGG 59.615 55.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.926018 GGACAGTTTATTCTGTGGTTTGATTTT 59.074 33.333 4.06 0.00 46.81 1.82
1 2 7.433680 GGACAGTTTATTCTGTGGTTTGATTT 58.566 34.615 4.06 0.00 46.81 2.17
2 3 6.293955 CGGACAGTTTATTCTGTGGTTTGATT 60.294 38.462 4.06 0.00 46.81 2.57
3 4 5.181245 CGGACAGTTTATTCTGTGGTTTGAT 59.819 40.000 4.06 0.00 46.81 2.57
4 5 4.513692 CGGACAGTTTATTCTGTGGTTTGA 59.486 41.667 4.06 0.00 46.81 2.69
5 6 4.274950 ACGGACAGTTTATTCTGTGGTTTG 59.725 41.667 4.06 0.00 46.81 2.93
6 7 4.274950 CACGGACAGTTTATTCTGTGGTTT 59.725 41.667 4.06 0.00 46.81 3.27
7 8 3.813166 CACGGACAGTTTATTCTGTGGTT 59.187 43.478 4.06 0.00 46.81 3.67
8 9 3.070446 TCACGGACAGTTTATTCTGTGGT 59.930 43.478 9.98 0.28 46.81 4.16
9 10 3.659786 TCACGGACAGTTTATTCTGTGG 58.340 45.455 9.98 0.00 46.81 4.17
10 11 5.236478 AGTTTCACGGACAGTTTATTCTGTG 59.764 40.000 4.06 4.48 46.81 3.66
12 13 5.924475 AGTTTCACGGACAGTTTATTCTG 57.076 39.130 0.00 0.00 40.80 3.02
13 14 8.617290 AAATAGTTTCACGGACAGTTTATTCT 57.383 30.769 0.00 0.00 0.00 2.40
14 15 8.500773 TGAAATAGTTTCACGGACAGTTTATTC 58.499 33.333 1.24 0.00 44.21 1.75
15 16 8.385898 TGAAATAGTTTCACGGACAGTTTATT 57.614 30.769 1.24 0.00 44.21 1.40
16 17 7.972832 TGAAATAGTTTCACGGACAGTTTAT 57.027 32.000 1.24 0.00 44.21 1.40
28 29 3.734463 TCAGCCACGTGAAATAGTTTCA 58.266 40.909 19.30 1.24 46.68 2.69
29 30 4.742438 TTCAGCCACGTGAAATAGTTTC 57.258 40.909 19.30 0.00 40.08 2.78
30 31 5.705609 AATTCAGCCACGTGAAATAGTTT 57.294 34.783 19.30 0.00 39.84 2.66
31 32 5.705609 AAATTCAGCCACGTGAAATAGTT 57.294 34.783 19.30 2.22 39.84 2.24
32 33 5.705609 AAAATTCAGCCACGTGAAATAGT 57.294 34.783 19.30 0.00 39.84 2.12
52 53 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
53 54 0.816018 ATGTCGGGCGTCACACAAAA 60.816 50.000 0.00 0.00 0.00 2.44
54 55 1.227704 ATGTCGGGCGTCACACAAA 60.228 52.632 0.00 0.00 0.00 2.83
55 56 1.958715 CATGTCGGGCGTCACACAA 60.959 57.895 0.00 0.00 0.00 3.33
56 57 2.356913 CATGTCGGGCGTCACACA 60.357 61.111 0.00 0.00 0.00 3.72
57 58 1.626654 CTTCATGTCGGGCGTCACAC 61.627 60.000 0.00 0.00 0.00 3.82
58 59 1.374125 CTTCATGTCGGGCGTCACA 60.374 57.895 0.00 0.00 0.00 3.58
59 60 2.100631 CCTTCATGTCGGGCGTCAC 61.101 63.158 0.00 0.00 0.00 3.67
60 61 2.264480 CCTTCATGTCGGGCGTCA 59.736 61.111 0.00 0.00 0.00 4.35
61 62 3.195698 GCCTTCATGTCGGGCGTC 61.196 66.667 9.64 0.00 36.37 5.19
65 66 4.776322 TGGCGCCTTCATGTCGGG 62.776 66.667 29.70 0.00 0.00 5.14
66 67 3.499737 GTGGCGCCTTCATGTCGG 61.500 66.667 29.70 0.00 0.00 4.79
67 68 2.741985 TGTGGCGCCTTCATGTCG 60.742 61.111 29.70 0.00 0.00 4.35
68 69 0.391130 TAGTGTGGCGCCTTCATGTC 60.391 55.000 29.70 14.26 0.00 3.06
69 70 0.673644 GTAGTGTGGCGCCTTCATGT 60.674 55.000 29.70 18.43 0.00 3.21
70 71 0.673333 TGTAGTGTGGCGCCTTCATG 60.673 55.000 29.70 0.00 0.00 3.07
71 72 0.673644 GTGTAGTGTGGCGCCTTCAT 60.674 55.000 29.70 13.83 0.00 2.57
72 73 1.301401 GTGTAGTGTGGCGCCTTCA 60.301 57.895 29.70 22.99 0.00 3.02
73 74 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
74 75 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
75 76 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
76 77 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
77 78 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
78 79 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
79 80 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
80 81 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
82 83 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
83 84 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
84 85 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
85 86 0.599991 TGAGGCGTTGCACAGTGTAG 60.600 55.000 1.61 0.00 0.00 2.74
86 87 0.034756 ATGAGGCGTTGCACAGTGTA 59.965 50.000 1.61 0.00 0.00 2.90
87 88 0.034756 TATGAGGCGTTGCACAGTGT 59.965 50.000 1.61 0.00 0.00 3.55
88 89 0.723414 CTATGAGGCGTTGCACAGTG 59.277 55.000 0.00 0.00 0.00 3.66
89 90 0.608130 TCTATGAGGCGTTGCACAGT 59.392 50.000 0.00 0.00 0.00 3.55
90 91 1.945387 ATCTATGAGGCGTTGCACAG 58.055 50.000 0.00 0.00 0.00 3.66
91 92 2.224042 CCTATCTATGAGGCGTTGCACA 60.224 50.000 0.00 0.00 0.00 4.57
92 93 2.408050 CCTATCTATGAGGCGTTGCAC 58.592 52.381 0.00 0.00 0.00 4.57
93 94 2.820059 CCTATCTATGAGGCGTTGCA 57.180 50.000 0.00 0.00 0.00 4.08
100 101 2.159503 CGTGTAGCGCCTATCTATGAGG 60.160 54.545 2.29 0.00 37.12 3.86
101 102 3.124316 CGTGTAGCGCCTATCTATGAG 57.876 52.381 2.29 0.00 0.00 2.90
131 132 3.357079 GCAGTCTGGGGTGCAACG 61.357 66.667 1.14 0.00 39.62 4.10
132 133 2.124507 TAGGCAGTCTGGGGTGCAAC 62.125 60.000 1.14 0.00 41.75 4.17
133 134 1.422977 TTAGGCAGTCTGGGGTGCAA 61.423 55.000 1.14 0.00 41.75 4.08
134 135 1.422977 TTTAGGCAGTCTGGGGTGCA 61.423 55.000 1.14 0.00 41.75 4.57
135 136 0.251165 TTTTAGGCAGTCTGGGGTGC 60.251 55.000 1.14 0.00 39.08 5.01
136 137 2.286365 TTTTTAGGCAGTCTGGGGTG 57.714 50.000 1.14 0.00 0.00 4.61
137 138 3.165071 CAATTTTTAGGCAGTCTGGGGT 58.835 45.455 1.14 0.00 0.00 4.95
138 139 3.165071 ACAATTTTTAGGCAGTCTGGGG 58.835 45.455 1.14 0.00 0.00 4.96
139 140 4.871933 AACAATTTTTAGGCAGTCTGGG 57.128 40.909 1.14 0.00 0.00 4.45
140 141 6.981722 ACTTAACAATTTTTAGGCAGTCTGG 58.018 36.000 1.14 0.00 0.00 3.86
141 142 7.648142 TGACTTAACAATTTTTAGGCAGTCTG 58.352 34.615 12.52 0.00 31.34 3.51
142 143 7.817418 TGACTTAACAATTTTTAGGCAGTCT 57.183 32.000 12.52 0.00 31.34 3.24
143 144 8.915654 CAATGACTTAACAATTTTTAGGCAGTC 58.084 33.333 7.36 7.36 0.00 3.51
144 145 8.421002 ACAATGACTTAACAATTTTTAGGCAGT 58.579 29.630 0.00 0.00 0.00 4.40
145 146 8.702438 CACAATGACTTAACAATTTTTAGGCAG 58.298 33.333 0.00 0.00 0.00 4.85
146 147 7.170658 GCACAATGACTTAACAATTTTTAGGCA 59.829 33.333 0.00 0.00 0.00 4.75
147 148 7.170658 TGCACAATGACTTAACAATTTTTAGGC 59.829 33.333 0.00 0.00 0.00 3.93
148 149 8.586570 TGCACAATGACTTAACAATTTTTAGG 57.413 30.769 0.00 0.00 0.00 2.69
149 150 9.462174 TCTGCACAATGACTTAACAATTTTTAG 57.538 29.630 0.00 0.00 0.00 1.85
150 151 9.462174 CTCTGCACAATGACTTAACAATTTTTA 57.538 29.630 0.00 0.00 0.00 1.52
151 152 7.042523 GCTCTGCACAATGACTTAACAATTTTT 60.043 33.333 0.00 0.00 0.00 1.94
152 153 6.421801 GCTCTGCACAATGACTTAACAATTTT 59.578 34.615 0.00 0.00 0.00 1.82
153 154 5.922544 GCTCTGCACAATGACTTAACAATTT 59.077 36.000 0.00 0.00 0.00 1.82
154 155 5.464168 GCTCTGCACAATGACTTAACAATT 58.536 37.500 0.00 0.00 0.00 2.32
155 156 4.082571 GGCTCTGCACAATGACTTAACAAT 60.083 41.667 0.00 0.00 0.00 2.71
156 157 3.253188 GGCTCTGCACAATGACTTAACAA 59.747 43.478 0.00 0.00 0.00 2.83
157 158 2.813754 GGCTCTGCACAATGACTTAACA 59.186 45.455 0.00 0.00 0.00 2.41
158 159 3.077359 AGGCTCTGCACAATGACTTAAC 58.923 45.455 0.00 0.00 0.00 2.01
159 160 3.423539 AGGCTCTGCACAATGACTTAA 57.576 42.857 0.00 0.00 0.00 1.85
160 161 4.222810 TCTTAGGCTCTGCACAATGACTTA 59.777 41.667 0.00 0.00 0.00 2.24
161 162 3.008375 TCTTAGGCTCTGCACAATGACTT 59.992 43.478 0.00 0.00 0.00 3.01
162 163 2.568956 TCTTAGGCTCTGCACAATGACT 59.431 45.455 0.00 0.00 0.00 3.41
163 164 2.935201 CTCTTAGGCTCTGCACAATGAC 59.065 50.000 0.00 0.00 0.00 3.06
164 165 2.679059 GCTCTTAGGCTCTGCACAATGA 60.679 50.000 0.00 0.00 0.00 2.57
165 166 1.669779 GCTCTTAGGCTCTGCACAATG 59.330 52.381 0.00 0.00 0.00 2.82
166 167 1.558756 AGCTCTTAGGCTCTGCACAAT 59.441 47.619 0.00 0.00 38.24 2.71
167 168 0.979665 AGCTCTTAGGCTCTGCACAA 59.020 50.000 0.00 0.00 38.24 3.33
168 169 1.753649 CTAGCTCTTAGGCTCTGCACA 59.246 52.381 0.00 0.00 42.97 4.57
169 170 1.068434 CCTAGCTCTTAGGCTCTGCAC 59.932 57.143 0.00 0.00 42.50 4.57
170 171 1.407936 CCTAGCTCTTAGGCTCTGCA 58.592 55.000 0.00 0.00 42.50 4.41
184 185 4.475312 ACTATACAGTGCAGCGCCTAGC 62.475 54.545 2.29 7.01 38.99 3.42
185 186 1.338337 ACTATACAGTGCAGCGCCTAG 59.662 52.381 2.29 0.00 32.25 3.02
186 187 1.067060 CACTATACAGTGCAGCGCCTA 59.933 52.381 2.29 0.00 45.44 3.93
187 188 0.179100 CACTATACAGTGCAGCGCCT 60.179 55.000 2.29 0.00 45.44 5.52
188 189 2.301505 CACTATACAGTGCAGCGCC 58.698 57.895 2.29 0.00 45.44 6.53
196 197 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
197 198 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
198 199 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
199 200 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
200 201 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
201 202 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
202 203 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
203 204 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
204 205 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
205 206 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
206 207 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
207 208 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
216 217 3.362399 TAGTGCAGCGCCTGAGAGC 62.362 63.158 2.29 0.00 39.42 4.09
217 218 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
218 219 1.979155 ACTAGTGCAGCGCCTGAGA 60.979 57.895 2.29 0.00 32.44 3.27
219 220 1.808799 CACTAGTGCAGCGCCTGAG 60.809 63.158 10.54 0.34 32.44 3.35
220 221 2.262603 CACTAGTGCAGCGCCTGA 59.737 61.111 10.54 0.00 32.44 3.86
221 222 2.816958 CCACTAGTGCAGCGCCTG 60.817 66.667 17.86 2.69 34.12 4.85
222 223 2.883828 AACCACTAGTGCAGCGCCT 61.884 57.895 17.86 0.00 0.00 5.52
223 224 2.358737 AACCACTAGTGCAGCGCC 60.359 61.111 17.86 0.00 0.00 6.53
224 225 2.863153 CAACCACTAGTGCAGCGC 59.137 61.111 17.86 0.00 0.00 5.92
225 226 1.960763 TGCAACCACTAGTGCAGCG 60.961 57.895 17.86 6.34 31.61 5.18
226 227 1.576421 GTGCAACCACTAGTGCAGC 59.424 57.895 17.86 18.77 38.93 5.25
235 236 5.285651 TGCTTTATTTTGTAGTGCAACCAC 58.714 37.500 0.00 0.00 42.39 4.16
236 237 5.521906 TGCTTTATTTTGTAGTGCAACCA 57.478 34.783 0.00 0.00 37.80 3.67
237 238 6.644592 TGATTGCTTTATTTTGTAGTGCAACC 59.355 34.615 0.00 0.00 40.84 3.77
238 239 7.382218 AGTGATTGCTTTATTTTGTAGTGCAAC 59.618 33.333 0.00 0.00 40.84 4.17
239 240 7.432869 AGTGATTGCTTTATTTTGTAGTGCAA 58.567 30.769 0.00 0.00 41.94 4.08
240 241 6.980593 AGTGATTGCTTTATTTTGTAGTGCA 58.019 32.000 0.00 0.00 0.00 4.57
241 242 8.237267 ACTAGTGATTGCTTTATTTTGTAGTGC 58.763 33.333 0.00 0.00 0.00 4.40
242 243 9.546909 CACTAGTGATTGCTTTATTTTGTAGTG 57.453 33.333 18.45 0.00 0.00 2.74
243 244 8.237267 GCACTAGTGATTGCTTTATTTTGTAGT 58.763 33.333 27.08 0.00 35.74 2.73
244 245 8.236586 TGCACTAGTGATTGCTTTATTTTGTAG 58.763 33.333 27.08 0.00 39.62 2.74
245 246 8.105097 TGCACTAGTGATTGCTTTATTTTGTA 57.895 30.769 27.08 0.00 39.62 2.41
246 247 6.980593 TGCACTAGTGATTGCTTTATTTTGT 58.019 32.000 27.08 0.00 39.62 2.83
247 248 7.409661 CGTTGCACTAGTGATTGCTTTATTTTG 60.410 37.037 27.08 0.00 39.62 2.44
248 249 6.582295 CGTTGCACTAGTGATTGCTTTATTTT 59.418 34.615 27.08 0.00 39.62 1.82
249 250 6.086222 CGTTGCACTAGTGATTGCTTTATTT 58.914 36.000 27.08 0.00 39.62 1.40
250 251 5.631026 CGTTGCACTAGTGATTGCTTTATT 58.369 37.500 27.08 0.00 39.62 1.40
251 252 4.437390 GCGTTGCACTAGTGATTGCTTTAT 60.437 41.667 27.08 0.00 39.62 1.40
252 253 3.120338 GCGTTGCACTAGTGATTGCTTTA 60.120 43.478 27.08 0.00 39.62 1.85
253 254 2.350772 GCGTTGCACTAGTGATTGCTTT 60.351 45.455 27.08 0.00 39.62 3.51
254 255 1.197721 GCGTTGCACTAGTGATTGCTT 59.802 47.619 27.08 0.00 39.62 3.91
255 256 0.798776 GCGTTGCACTAGTGATTGCT 59.201 50.000 27.08 0.00 39.62 3.91
256 257 0.179189 GGCGTTGCACTAGTGATTGC 60.179 55.000 27.08 20.88 39.33 3.56
257 258 1.442769 AGGCGTTGCACTAGTGATTG 58.557 50.000 27.08 12.90 0.00 2.67
258 259 2.496070 TCTAGGCGTTGCACTAGTGATT 59.504 45.455 27.08 5.41 38.24 2.57
259 260 2.100197 TCTAGGCGTTGCACTAGTGAT 58.900 47.619 27.08 5.04 38.24 3.06
260 261 1.541379 TCTAGGCGTTGCACTAGTGA 58.459 50.000 27.08 8.89 38.24 3.41
261 262 2.263077 CTTCTAGGCGTTGCACTAGTG 58.737 52.381 18.93 18.93 38.24 2.74
262 263 1.404315 GCTTCTAGGCGTTGCACTAGT 60.404 52.381 8.47 0.00 38.24 2.57
263 264 1.134965 AGCTTCTAGGCGTTGCACTAG 60.135 52.381 3.29 3.29 38.38 2.57
264 265 0.895530 AGCTTCTAGGCGTTGCACTA 59.104 50.000 0.00 0.00 37.29 2.74
265 266 0.895530 TAGCTTCTAGGCGTTGCACT 59.104 50.000 0.00 0.00 37.29 4.40
266 267 1.281899 CTAGCTTCTAGGCGTTGCAC 58.718 55.000 0.00 0.00 37.29 4.57
267 268 0.175760 CCTAGCTTCTAGGCGTTGCA 59.824 55.000 6.94 0.00 37.29 4.08
268 269 2.979130 CCTAGCTTCTAGGCGTTGC 58.021 57.895 6.94 0.00 37.29 4.17
282 283 2.097038 GTCAGTGTGCAGCGCCTAG 61.097 63.158 2.29 0.00 0.00 3.02
283 284 2.048222 GTCAGTGTGCAGCGCCTA 60.048 61.111 2.29 0.00 0.00 3.93
284 285 2.099652 TAAGTCAGTGTGCAGCGCCT 62.100 55.000 2.29 0.00 0.00 5.52
285 286 1.630244 CTAAGTCAGTGTGCAGCGCC 61.630 60.000 2.29 0.00 0.00 6.53
286 287 0.946221 ACTAAGTCAGTGTGCAGCGC 60.946 55.000 0.00 0.00 35.62 5.92
287 288 2.347697 TACTAAGTCAGTGTGCAGCG 57.652 50.000 0.00 0.00 38.24 5.18
288 289 5.613358 AAATTACTAAGTCAGTGTGCAGC 57.387 39.130 0.00 0.00 38.24 5.25
289 290 6.299604 CGAAAATTACTAAGTCAGTGTGCAG 58.700 40.000 0.00 0.00 38.24 4.41
290 291 5.178623 CCGAAAATTACTAAGTCAGTGTGCA 59.821 40.000 0.00 0.00 38.24 4.57
291 292 5.407387 TCCGAAAATTACTAAGTCAGTGTGC 59.593 40.000 0.00 0.00 38.24 4.57
292 293 7.330946 TGATCCGAAAATTACTAAGTCAGTGTG 59.669 37.037 0.00 0.00 38.24 3.82
293 294 7.331193 GTGATCCGAAAATTACTAAGTCAGTGT 59.669 37.037 0.00 0.00 38.24 3.55
294 295 7.330946 TGTGATCCGAAAATTACTAAGTCAGTG 59.669 37.037 0.00 0.00 38.24 3.66
295 296 7.331193 GTGTGATCCGAAAATTACTAAGTCAGT 59.669 37.037 0.00 0.00 41.62 3.41
296 297 7.462856 CGTGTGATCCGAAAATTACTAAGTCAG 60.463 40.741 0.00 0.00 0.00 3.51
297 298 6.309494 CGTGTGATCCGAAAATTACTAAGTCA 59.691 38.462 0.00 0.00 0.00 3.41
298 299 6.237755 CCGTGTGATCCGAAAATTACTAAGTC 60.238 42.308 0.00 0.00 0.00 3.01
299 300 5.579511 CCGTGTGATCCGAAAATTACTAAGT 59.420 40.000 0.00 0.00 0.00 2.24
300 301 5.808540 TCCGTGTGATCCGAAAATTACTAAG 59.191 40.000 0.00 0.00 0.00 2.18
301 302 5.722263 TCCGTGTGATCCGAAAATTACTAA 58.278 37.500 0.00 0.00 0.00 2.24
302 303 5.327616 TCCGTGTGATCCGAAAATTACTA 57.672 39.130 0.00 0.00 0.00 1.82
303 304 4.196626 TCCGTGTGATCCGAAAATTACT 57.803 40.909 0.00 0.00 0.00 2.24
304 305 4.785341 GCATCCGTGTGATCCGAAAATTAC 60.785 45.833 0.00 0.00 0.00 1.89
305 306 3.311322 GCATCCGTGTGATCCGAAAATTA 59.689 43.478 0.00 0.00 0.00 1.40
306 307 2.097466 GCATCCGTGTGATCCGAAAATT 59.903 45.455 0.00 0.00 0.00 1.82
307 308 1.670811 GCATCCGTGTGATCCGAAAAT 59.329 47.619 0.00 0.00 0.00 1.82
308 309 1.083489 GCATCCGTGTGATCCGAAAA 58.917 50.000 0.00 0.00 0.00 2.29
309 310 1.081556 CGCATCCGTGTGATCCGAAA 61.082 55.000 0.00 0.00 36.74 3.46
310 311 1.518352 CGCATCCGTGTGATCCGAA 60.518 57.895 0.00 0.00 36.74 4.30
311 312 2.104132 CGCATCCGTGTGATCCGA 59.896 61.111 0.00 0.00 36.74 4.55
312 313 2.104132 TCGCATCCGTGTGATCCG 59.896 61.111 0.00 0.00 39.80 4.18
313 314 2.230940 CGTCGCATCCGTGTGATCC 61.231 63.158 0.00 0.00 45.74 3.36
314 315 2.860628 GCGTCGCATCCGTGTGATC 61.861 63.158 13.44 0.00 45.74 2.92
315 316 2.885644 GCGTCGCATCCGTGTGAT 60.886 61.111 13.44 0.00 45.74 3.06
316 317 4.050934 AGCGTCGCATCCGTGTGA 62.051 61.111 21.09 0.00 42.28 3.58
317 318 3.842126 CAGCGTCGCATCCGTGTG 61.842 66.667 21.09 2.74 37.19 3.82
342 343 2.947852 CCTCACATATAGGCGCTACAC 58.052 52.381 7.64 0.00 0.00 2.90
350 351 1.867233 GTGCAACGCCTCACATATAGG 59.133 52.381 0.00 0.00 37.17 2.57
351 352 2.541346 CTGTGCAACGCCTCACATATAG 59.459 50.000 4.97 0.00 41.69 1.31
352 353 2.093711 ACTGTGCAACGCCTCACATATA 60.094 45.455 4.97 0.00 41.69 0.86
353 354 1.339055 ACTGTGCAACGCCTCACATAT 60.339 47.619 4.97 0.00 41.69 1.78
354 355 0.034756 ACTGTGCAACGCCTCACATA 59.965 50.000 4.97 0.00 41.69 2.29
355 356 1.227943 ACTGTGCAACGCCTCACAT 60.228 52.632 4.97 0.00 41.69 3.21
356 357 2.179547 CACTGTGCAACGCCTCACA 61.180 57.895 0.00 4.54 42.39 3.58
357 358 0.878523 TACACTGTGCAACGCCTCAC 60.879 55.000 7.90 0.00 42.39 3.51
358 359 0.599991 CTACACTGTGCAACGCCTCA 60.600 55.000 7.90 0.00 42.39 3.86
359 360 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
360 361 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
361 362 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
362 363 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
363 364 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
364 365 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
365 366 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
366 367 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
367 368 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
368 369 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
369 370 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
370 371 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
371 372 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
372 373 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
373 374 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
374 375 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
375 376 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
376 377 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
377 378 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
378 379 4.228567 TGACACGAAGGCGCCACA 62.229 61.111 31.54 13.23 42.48 4.17
379 380 3.414700 CTGACACGAAGGCGCCAC 61.415 66.667 31.54 20.88 42.48 5.01
380 381 4.680237 CCTGACACGAAGGCGCCA 62.680 66.667 31.54 3.45 42.48 5.69
385 386 2.022129 GTGACGCCTGACACGAAGG 61.022 63.158 0.00 0.00 37.91 3.46
386 387 1.299850 TGTGACGCCTGACACGAAG 60.300 57.895 0.00 0.00 42.55 3.79
387 388 1.590525 GTGTGACGCCTGACACGAA 60.591 57.895 0.00 0.00 42.55 3.85
388 389 2.027024 GTGTGACGCCTGACACGA 59.973 61.111 0.00 0.00 42.55 4.35
389 390 1.425267 TTTGTGTGACGCCTGACACG 61.425 55.000 1.58 0.00 44.55 4.49
390 391 0.730265 TTTTGTGTGACGCCTGACAC 59.270 50.000 0.00 0.00 42.40 3.67
391 392 1.400142 CTTTTTGTGTGACGCCTGACA 59.600 47.619 0.00 0.00 0.00 3.58
392 393 1.268539 CCTTTTTGTGTGACGCCTGAC 60.269 52.381 0.00 0.00 0.00 3.51
393 394 1.021202 CCTTTTTGTGTGACGCCTGA 58.979 50.000 0.00 0.00 0.00 3.86
394 395 0.594796 GCCTTTTTGTGTGACGCCTG 60.595 55.000 0.00 0.00 0.00 4.85
395 396 1.733526 GCCTTTTTGTGTGACGCCT 59.266 52.632 0.00 0.00 0.00 5.52
396 397 1.299850 GGCCTTTTTGTGTGACGCC 60.300 57.895 0.00 0.00 0.00 5.68
397 398 0.594796 CTGGCCTTTTTGTGTGACGC 60.595 55.000 3.32 0.00 0.00 5.19
398 399 0.594796 GCTGGCCTTTTTGTGTGACG 60.595 55.000 3.32 0.00 0.00 4.35
399 400 0.249447 GGCTGGCCTTTTTGTGTGAC 60.249 55.000 3.32 0.00 0.00 3.67
400 401 1.733402 CGGCTGGCCTTTTTGTGTGA 61.733 55.000 3.32 0.00 0.00 3.58
401 402 1.300080 CGGCTGGCCTTTTTGTGTG 60.300 57.895 3.32 0.00 0.00 3.82
402 403 3.128375 CGGCTGGCCTTTTTGTGT 58.872 55.556 3.32 0.00 0.00 3.72
403 404 2.356194 GCGGCTGGCCTTTTTGTG 60.356 61.111 3.32 0.00 34.80 3.33
404 405 3.977244 CGCGGCTGGCCTTTTTGT 61.977 61.111 3.32 0.00 38.94 2.83
405 406 3.977244 ACGCGGCTGGCCTTTTTG 61.977 61.111 12.47 0.00 38.94 2.44
406 407 3.977244 CACGCGGCTGGCCTTTTT 61.977 61.111 12.47 0.00 38.94 1.94
407 408 4.947147 TCACGCGGCTGGCCTTTT 62.947 61.111 12.47 0.00 38.94 2.27
408 409 4.947147 TTCACGCGGCTGGCCTTT 62.947 61.111 12.47 0.00 38.94 3.11
409 410 2.813226 TATTTCACGCGGCTGGCCTT 62.813 55.000 12.47 0.00 38.94 4.35
410 411 3.323758 TATTTCACGCGGCTGGCCT 62.324 57.895 12.47 0.00 38.94 5.19
411 412 2.822255 TATTTCACGCGGCTGGCC 60.822 61.111 12.47 0.00 38.94 5.36
412 413 1.644786 AACTATTTCACGCGGCTGGC 61.645 55.000 12.47 0.00 38.69 4.85
413 414 0.802494 AAACTATTTCACGCGGCTGG 59.198 50.000 12.47 0.00 0.00 4.85
414 415 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
415 416 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
422 423 9.897744 GAATGAAATGTCTGTGAAACTATTTCA 57.102 29.630 11.20 11.20 46.68 2.69
424 425 9.903682 CAGAATGAAATGTCTGTGAAACTATTT 57.096 29.630 0.00 0.00 39.69 1.40
435 436 8.981724 AATCAAATCACAGAATGAAATGTCTG 57.018 30.769 0.00 0.00 45.59 3.51
436 437 9.991906 AAAATCAAATCACAGAATGAAATGTCT 57.008 25.926 0.00 0.00 41.93 3.41
438 439 9.550406 ACAAAATCAAATCACAGAATGAAATGT 57.450 25.926 0.00 0.00 41.93 2.71
440 441 9.211485 GGACAAAATCAAATCACAGAATGAAAT 57.789 29.630 0.00 0.00 41.93 2.17
441 442 8.202811 TGGACAAAATCAAATCACAGAATGAAA 58.797 29.630 0.00 0.00 41.93 2.69
442 443 7.724287 TGGACAAAATCAAATCACAGAATGAA 58.276 30.769 0.00 0.00 41.93 2.57
443 444 7.287512 TGGACAAAATCAAATCACAGAATGA 57.712 32.000 0.00 0.00 43.13 2.57
444 445 9.297586 CTATGGACAAAATCAAATCACAGAATG 57.702 33.333 0.00 0.00 46.00 2.67
445 446 8.472413 CCTATGGACAAAATCAAATCACAGAAT 58.528 33.333 0.00 0.00 0.00 2.40
446 447 7.451255 ACCTATGGACAAAATCAAATCACAGAA 59.549 33.333 0.00 0.00 0.00 3.02
447 448 6.947733 ACCTATGGACAAAATCAAATCACAGA 59.052 34.615 0.00 0.00 0.00 3.41
448 449 7.094248 TGACCTATGGACAAAATCAAATCACAG 60.094 37.037 0.00 0.00 0.00 3.66
449 450 6.718912 TGACCTATGGACAAAATCAAATCACA 59.281 34.615 0.00 0.00 0.00 3.58
450 451 7.156876 TGACCTATGGACAAAATCAAATCAC 57.843 36.000 0.00 0.00 0.00 3.06
451 452 7.773489 TTGACCTATGGACAAAATCAAATCA 57.227 32.000 0.00 0.00 34.82 2.57
452 453 9.657419 AATTTGACCTATGGACAAAATCAAATC 57.343 29.630 15.42 0.00 46.24 2.17
454 455 9.270640 CAAATTTGACCTATGGACAAAATCAAA 57.729 29.630 13.08 8.59 46.24 2.69
455 456 8.428063 ACAAATTTGACCTATGGACAAAATCAA 58.572 29.630 24.64 0.95 46.24 2.57
456 457 7.961351 ACAAATTTGACCTATGGACAAAATCA 58.039 30.769 24.64 0.00 46.24 2.57
457 458 8.087750 TGACAAATTTGACCTATGGACAAAATC 58.912 33.333 24.64 6.30 46.24 2.17
458 459 7.961351 TGACAAATTTGACCTATGGACAAAAT 58.039 30.769 24.64 7.15 46.24 1.82
459 460 7.353414 TGACAAATTTGACCTATGGACAAAA 57.647 32.000 24.64 0.00 46.24 2.44
460 461 6.968263 TGACAAATTTGACCTATGGACAAA 57.032 33.333 24.64 14.25 46.87 2.83
461 462 6.968263 TTGACAAATTTGACCTATGGACAA 57.032 33.333 24.64 11.75 35.80 3.18
462 463 7.537596 AATTGACAAATTTGACCTATGGACA 57.462 32.000 24.64 7.24 31.76 4.02
463 464 8.711457 CAAAATTGACAAATTTGACCTATGGAC 58.289 33.333 24.64 5.11 43.63 4.02
464 465 7.387397 GCAAAATTGACAAATTTGACCTATGGA 59.613 33.333 25.81 0.00 43.63 3.41
465 466 7.361116 GGCAAAATTGACAAATTTGACCTATGG 60.361 37.037 25.81 8.50 43.63 2.74
466 467 7.361116 GGGCAAAATTGACAAATTTGACCTATG 60.361 37.037 33.00 10.53 43.63 2.23
467 468 6.654582 GGGCAAAATTGACAAATTTGACCTAT 59.345 34.615 33.00 13.80 43.63 2.57
468 469 5.994668 GGGCAAAATTGACAAATTTGACCTA 59.005 36.000 33.00 12.29 43.63 3.08
469 470 4.821260 GGGCAAAATTGACAAATTTGACCT 59.179 37.500 33.00 2.04 43.63 3.85
470 471 4.821260 AGGGCAAAATTGACAAATTTGACC 59.179 37.500 33.18 33.18 43.63 4.02
471 472 6.147656 CCTAGGGCAAAATTGACAAATTTGAC 59.852 38.462 25.81 23.75 43.63 3.18
472 473 6.229733 CCTAGGGCAAAATTGACAAATTTGA 58.770 36.000 25.81 9.36 43.63 2.69
473 474 5.412286 CCCTAGGGCAAAATTGACAAATTTG 59.588 40.000 16.90 19.89 43.63 2.32
474 475 5.073008 ACCCTAGGGCAAAATTGACAAATTT 59.927 36.000 28.88 0.00 42.02 1.82
475 476 4.597075 ACCCTAGGGCAAAATTGACAAATT 59.403 37.500 28.88 0.00 38.18 1.82
476 477 4.167319 ACCCTAGGGCAAAATTGACAAAT 58.833 39.130 28.88 0.00 38.18 2.32
477 478 3.582164 ACCCTAGGGCAAAATTGACAAA 58.418 40.909 28.88 0.00 38.18 2.83
478 479 3.252554 ACCCTAGGGCAAAATTGACAA 57.747 42.857 28.88 0.00 38.18 3.18
479 480 2.990740 ACCCTAGGGCAAAATTGACA 57.009 45.000 28.88 0.00 38.18 3.58
480 481 2.496070 GGAACCCTAGGGCAAAATTGAC 59.504 50.000 28.88 5.76 39.32 3.18
481 482 2.381961 AGGAACCCTAGGGCAAAATTGA 59.618 45.455 28.88 0.00 39.32 2.57
482 483 2.820178 AGGAACCCTAGGGCAAAATTG 58.180 47.619 28.88 1.35 39.32 2.32
730 760 5.068987 CCAACACAGAAATCAGGGAGAAAAA 59.931 40.000 0.00 0.00 0.00 1.94
750 780 5.073311 TCTACAGCAAGTACTCATCCAAC 57.927 43.478 0.00 0.00 0.00 3.77
809 839 2.636830 ACCATGCAGCAAGTACTCATC 58.363 47.619 0.00 0.00 0.00 2.92
935 992 1.661341 AGAGCCTAAAATGCAGAGCG 58.339 50.000 0.00 0.00 0.00 5.03
936 993 5.559799 CGAATTAGAGCCTAAAATGCAGAGC 60.560 44.000 0.00 0.00 0.00 4.09
1026 1137 2.492090 GAGATCGCCGACAGCACT 59.508 61.111 0.00 0.00 44.04 4.40
1187 1300 4.080863 ACCAAGTAGATGGGAAGCTACAAG 60.081 45.833 4.20 0.00 45.18 3.16
1323 1485 6.617371 AGAGAGAGAGAGAGAGAGAATTAGGT 59.383 42.308 0.00 0.00 0.00 3.08
1341 1503 6.629128 TGCATAGACAAAAAGAGAGAGAGAG 58.371 40.000 0.00 0.00 0.00 3.20
1343 1505 6.397272 ACTGCATAGACAAAAAGAGAGAGAG 58.603 40.000 0.00 0.00 0.00 3.20
1344 1506 6.210385 AGACTGCATAGACAAAAAGAGAGAGA 59.790 38.462 0.00 0.00 0.00 3.10
1345 1507 6.397272 AGACTGCATAGACAAAAAGAGAGAG 58.603 40.000 0.00 0.00 0.00 3.20
1346 1508 6.015095 TGAGACTGCATAGACAAAAAGAGAGA 60.015 38.462 0.00 0.00 0.00 3.10
1347 1509 6.162079 TGAGACTGCATAGACAAAAAGAGAG 58.838 40.000 0.00 0.00 0.00 3.20
1348 1510 6.101650 TGAGACTGCATAGACAAAAAGAGA 57.898 37.500 0.00 0.00 0.00 3.10
1349 1511 6.981762 ATGAGACTGCATAGACAAAAAGAG 57.018 37.500 0.00 0.00 0.00 2.85
1350 1512 6.348786 GCAATGAGACTGCATAGACAAAAAGA 60.349 38.462 0.00 0.00 39.69 2.52
1420 1582 6.908870 TGCACAAGTGTATATTAAGCTGAG 57.091 37.500 1.79 0.00 0.00 3.35
1453 1618 9.308318 GCAGAAAACCAAAATAAAAGAGTGTAA 57.692 29.630 0.00 0.00 0.00 2.41
1458 1623 6.073602 GCCAGCAGAAAACCAAAATAAAAGAG 60.074 38.462 0.00 0.00 0.00 2.85
1465 1630 3.775261 ATGCCAGCAGAAAACCAAAAT 57.225 38.095 0.00 0.00 0.00 1.82
1859 2048 5.613812 TCAAATGTAGAATTGTAACACGCG 58.386 37.500 3.53 3.53 0.00 6.01
1960 2166 1.137404 GCATGTCATGAACACCGGC 59.863 57.895 17.24 0.56 41.75 6.13
1961 2167 1.167851 AAGCATGTCATGAACACCGG 58.832 50.000 17.24 0.00 41.75 5.28
1963 2169 2.029649 AGCAAAGCATGTCATGAACACC 60.030 45.455 17.24 0.00 41.75 4.16
1978 2184 4.178545 CCCAGATGGTTACAAAGCAAAG 57.821 45.455 0.00 0.00 42.83 2.77
2058 2329 9.696917 CTAAACCATCAAAAGAACTAGCAATTT 57.303 29.630 0.00 0.00 0.00 1.82
2115 2388 4.301628 CAGAGTTGCCAAATGAAAGGAAC 58.698 43.478 0.00 0.00 0.00 3.62
2118 2391 2.892852 TCCAGAGTTGCCAAATGAAAGG 59.107 45.455 0.00 0.00 0.00 3.11
2164 2449 5.302568 TCAAACTTCAAAGTGCCAATGAGAT 59.697 36.000 0.00 0.00 39.66 2.75
2189 2474 8.284945 TGATCTTTTGTTAAATCATGAGGAGG 57.715 34.615 0.09 0.00 0.00 4.30
2252 2537 6.701400 GCACAGTCCATTCTACAATTGTTTTT 59.299 34.615 17.78 0.00 0.00 1.94
2414 2721 1.377202 GAGCGAGTTCCCAATGCCA 60.377 57.895 0.00 0.00 0.00 4.92
2419 2726 2.347490 GGCAGAGCGAGTTCCCAA 59.653 61.111 0.00 0.00 0.00 4.12
2485 2795 1.617947 GGGGCTGTCGAGGACTTCAT 61.618 60.000 0.00 0.00 33.15 2.57
2486 2796 2.283529 GGGGCTGTCGAGGACTTCA 61.284 63.158 0.00 0.00 33.15 3.02
2487 2797 1.950973 GAGGGGCTGTCGAGGACTTC 61.951 65.000 0.00 0.00 33.15 3.01
2488 2798 1.985116 GAGGGGCTGTCGAGGACTT 60.985 63.158 0.00 0.00 33.15 3.01
2489 2799 2.363147 GAGGGGCTGTCGAGGACT 60.363 66.667 0.00 0.00 33.15 3.85
2502 2812 4.767892 AAGGGGCTCCAGGGAGGG 62.768 72.222 16.70 0.00 42.19 4.30
2638 3006 4.943705 CAGCACCACAAACTCCACTATAAT 59.056 41.667 0.00 0.00 0.00 1.28
2659 3027 5.337491 CCAATAGGACCCAAAAATCCAACAG 60.337 44.000 0.00 0.00 37.47 3.16
2665 3033 2.481276 GCGCCAATAGGACCCAAAAATC 60.481 50.000 0.00 0.00 36.89 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.