Multiple sequence alignment - TraesCS3D01G099100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G099100 chr3D 100.000 5912 0 0 1 5912 50790441 50784530 0.000000e+00 10918.0
1 TraesCS3D01G099100 chr3D 77.707 314 37 20 5436 5734 4574324 4574619 1.710000e-35 161.0
2 TraesCS3D01G099100 chr3D 83.810 105 13 4 5632 5734 355745478 355745376 4.880000e-16 97.1
3 TraesCS3D01G099100 chr3D 85.294 68 5 1 5673 5735 535484243 535484176 1.380000e-06 65.8
4 TraesCS3D01G099100 chr3B 87.687 2875 202 61 1 2798 81172721 81169922 0.000000e+00 3208.0
5 TraesCS3D01G099100 chr3B 81.554 965 122 36 3151 4097 81169567 81168641 0.000000e+00 745.0
6 TraesCS3D01G099100 chr3B 84.017 707 63 32 5214 5912 81166948 81166284 8.360000e-178 634.0
7 TraesCS3D01G099100 chr3B 93.642 346 14 2 4598 4943 81167558 81167221 1.470000e-140 510.0
8 TraesCS3D01G099100 chr3B 83.058 484 54 14 5421 5902 80545533 80545076 1.190000e-111 414.0
9 TraesCS3D01G099100 chr3B 93.724 239 10 4 4992 5230 81167203 81166970 2.620000e-93 353.0
10 TraesCS3D01G099100 chr3B 79.688 192 28 5 4358 4544 81168002 81167817 1.730000e-25 128.0
11 TraesCS3D01G099100 chr3A 92.210 1656 90 14 3900 5553 63572681 63571063 0.000000e+00 2307.0
12 TraesCS3D01G099100 chr3A 85.789 1724 128 49 1 1678 63576444 63574792 0.000000e+00 1718.0
13 TraesCS3D01G099100 chr3A 85.654 1429 145 39 1759 3147 63574737 63573329 0.000000e+00 1448.0
14 TraesCS3D01G099100 chr3A 84.848 528 51 18 3344 3858 63573192 63572681 6.840000e-139 505.0
15 TraesCS3D01G099100 chr1D 78.344 314 37 16 5436 5735 474970296 474970592 2.190000e-39 174.0
16 TraesCS3D01G099100 chr2A 77.597 308 40 14 5435 5729 6158202 6158493 6.130000e-35 159.0
17 TraesCS3D01G099100 chr2A 77.244 312 42 14 5435 5733 6106487 6106782 7.930000e-34 156.0
18 TraesCS3D01G099100 chr7A 92.381 105 7 1 5630 5734 204276883 204276986 1.330000e-31 148.0
19 TraesCS3D01G099100 chr7A 77.228 303 38 17 5434 5734 204297876 204298149 1.330000e-31 148.0
20 TraesCS3D01G099100 chr5B 76.752 314 43 15 5436 5736 563165555 563165851 1.330000e-31 148.0
21 TraesCS3D01G099100 chr5B 84.906 106 14 2 5632 5736 542293610 542293506 8.100000e-19 106.0
22 TraesCS3D01G099100 chr5B 90.541 74 6 1 5552 5625 584254084 584254012 4.880000e-16 97.1
23 TraesCS3D01G099100 chr5B 89.189 74 8 0 5552 5625 584294160 584294087 6.310000e-15 93.5
24 TraesCS3D01G099100 chr4B 78.008 241 32 15 5501 5737 573997365 573997142 1.340000e-26 132.0
25 TraesCS3D01G099100 chr7D 75.484 310 47 18 5439 5735 489723686 489723393 2.240000e-24 124.0
26 TraesCS3D01G099100 chr7D 92.105 76 4 2 5552 5625 36456034 36455959 8.100000e-19 106.0
27 TraesCS3D01G099100 chr4D 94.118 68 4 0 5552 5619 344939512 344939579 2.910000e-18 104.0
28 TraesCS3D01G099100 chr2D 78.109 201 17 13 5452 5625 32759250 32759050 1.050000e-17 102.0
29 TraesCS3D01G099100 chr7B 90.541 74 7 0 5552 5625 748589417 748589344 1.360000e-16 99.0
30 TraesCS3D01G099100 chr5D 88.462 78 9 0 5548 5625 287569336 287569259 1.750000e-15 95.3
31 TraesCS3D01G099100 chr1B 81.905 105 16 3 5633 5736 395963894 395963792 1.060000e-12 86.1
32 TraesCS3D01G099100 chr4A 100.000 29 0 0 4253 4281 603761088 603761060 3.000000e-03 54.7
33 TraesCS3D01G099100 chr4A 100.000 29 0 0 4253 4281 603831684 603831656 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G099100 chr3D 50784530 50790441 5911 True 10918.000000 10918 100.000000 1 5912 1 chr3D.!!$R1 5911
1 TraesCS3D01G099100 chr3B 81166284 81172721 6437 True 929.666667 3208 86.718667 1 5912 6 chr3B.!!$R2 5911
2 TraesCS3D01G099100 chr3A 63571063 63576444 5381 True 1494.500000 2307 87.125250 1 5553 4 chr3A.!!$R1 5552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 605 0.111639 ACGTAGGCAACCAAACCCAT 59.888 50.0 0.0 0.0 37.17 4.00 F
590 610 0.389296 GGCAACCAAACCCATAACGC 60.389 55.0 0.0 0.0 0.00 4.84 F
2028 2118 0.033796 TGGTCGGGGTGTCCTACTAG 60.034 60.0 0.0 0.0 0.00 2.57 F
2824 2941 0.179156 CATGCTCATGCGGTTCAACC 60.179 55.0 0.0 0.0 43.34 3.77 F
3507 3781 0.107897 CCCTGCATAGGCGTGTAACA 60.108 55.0 0.0 0.0 45.35 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1489 0.035439 TCATGAAAAGGCGGGAGGAC 60.035 55.0 0.0 0.0 0.00 3.85 R
2518 2622 0.179073 GACCACATCATCTGGGACCG 60.179 60.0 0.0 0.0 32.45 4.79 R
3008 3141 0.035458 CACTCCACACCACTCCTTCC 59.965 60.0 0.0 0.0 0.00 3.46 R
4686 5565 0.107508 CTGAACTCACCGCATCCCAT 60.108 55.0 0.0 0.0 0.00 4.00 R
5387 6305 0.250640 GTATCCTCCATGCCTGCCTG 60.251 60.0 0.0 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 112 5.151454 AGAGGAGGGATTGATCGAACTTAT 58.849 41.667 0.00 0.00 0.00 1.73
112 113 6.315714 AGAGGAGGGATTGATCGAACTTATA 58.684 40.000 0.00 0.00 0.00 0.98
128 129 6.412362 AACTTATAAACCATTGGTGCAACA 57.588 33.333 9.62 0.00 39.98 3.33
141 142 2.515398 CAACAGGGTGGAGGTGCA 59.485 61.111 0.00 0.00 0.00 4.57
146 147 2.358737 GGGTGGAGGTGCAGAACG 60.359 66.667 0.00 0.00 0.00 3.95
147 148 2.358737 GGTGGAGGTGCAGAACGG 60.359 66.667 0.00 0.00 0.00 4.44
208 209 4.070552 GCCAGCCGGAGAAGACGT 62.071 66.667 5.05 0.00 0.00 4.34
213 214 4.052229 CCGGAGAAGACGTGCCGT 62.052 66.667 0.00 0.00 45.10 5.68
310 313 1.352083 GAGGATGGCTATACAGGGCA 58.648 55.000 0.00 0.00 43.10 5.36
348 351 1.065709 TGACCTAATTTCTCCCACCGC 60.066 52.381 0.00 0.00 0.00 5.68
391 395 2.191641 GCACCATCTCCCTGCTCC 59.808 66.667 0.00 0.00 0.00 4.70
421 425 4.828296 GTCGCGTCCCCTCCCCTA 62.828 72.222 5.77 0.00 0.00 3.53
429 433 2.702748 GTCCCCTCCCCTACATATTGT 58.297 52.381 0.00 0.00 0.00 2.71
437 441 1.002087 CCCTACATATTGTCCGAGGCC 59.998 57.143 0.00 0.00 0.00 5.19
444 448 0.460311 ATTGTCCGAGGCCGACTAAG 59.540 55.000 10.17 0.00 38.22 2.18
446 450 2.361992 TCCGAGGCCGACTAAGCA 60.362 61.111 0.00 0.00 38.22 3.91
451 455 1.646189 GAGGCCGACTAAGCAGAAAG 58.354 55.000 0.00 0.00 0.00 2.62
466 470 2.357009 CAGAAAGGGCCGATTCAATCAG 59.643 50.000 21.82 7.23 0.00 2.90
468 472 3.199946 AGAAAGGGCCGATTCAATCAGTA 59.800 43.478 21.82 0.00 0.00 2.74
469 473 2.918712 AGGGCCGATTCAATCAGTAG 57.081 50.000 0.00 0.00 0.00 2.57
470 474 2.398588 AGGGCCGATTCAATCAGTAGA 58.601 47.619 0.00 0.00 0.00 2.59
471 475 2.103263 AGGGCCGATTCAATCAGTAGAC 59.897 50.000 0.00 0.00 0.00 2.59
472 476 2.484889 GGCCGATTCAATCAGTAGACC 58.515 52.381 0.00 0.00 0.00 3.85
473 477 2.103263 GGCCGATTCAATCAGTAGACCT 59.897 50.000 0.00 0.00 0.00 3.85
488 505 8.306313 TCAGTAGACCTATGCTTTAAGATTCA 57.694 34.615 0.00 0.00 0.00 2.57
519 536 5.350504 ACAAACCAAACAATGAACATGGA 57.649 34.783 0.00 0.00 35.16 3.41
520 537 5.927819 ACAAACCAAACAATGAACATGGAT 58.072 33.333 0.00 0.00 35.16 3.41
522 539 6.260493 ACAAACCAAACAATGAACATGGATTG 59.740 34.615 10.38 10.38 44.65 2.67
553 573 1.852067 AAAGTTGCATCGCACGGGTC 61.852 55.000 0.00 0.00 38.71 4.46
582 602 1.808343 CCTAACGTAGGCAACCAAACC 59.192 52.381 0.00 0.00 39.48 3.27
585 605 0.111639 ACGTAGGCAACCAAACCCAT 59.888 50.000 0.00 0.00 37.17 4.00
586 606 1.351683 ACGTAGGCAACCAAACCCATA 59.648 47.619 0.00 0.00 37.17 2.74
587 607 2.224818 ACGTAGGCAACCAAACCCATAA 60.225 45.455 0.00 0.00 37.17 1.90
589 609 1.253100 AGGCAACCAAACCCATAACG 58.747 50.000 0.00 0.00 37.17 3.18
590 610 0.389296 GGCAACCAAACCCATAACGC 60.389 55.000 0.00 0.00 0.00 4.84
591 611 0.601057 GCAACCAAACCCATAACGCT 59.399 50.000 0.00 0.00 0.00 5.07
592 612 1.668628 GCAACCAAACCCATAACGCTG 60.669 52.381 0.00 0.00 0.00 5.18
594 614 1.248101 ACCAAACCCATAACGCTGGC 61.248 55.000 0.00 0.00 34.77 4.85
595 615 1.247419 CCAAACCCATAACGCTGGCA 61.247 55.000 0.00 0.00 34.77 4.92
627 649 1.058695 GACCTCGTACAAATCGCAACG 59.941 52.381 0.00 0.00 36.71 4.10
760 800 0.872388 ACCACAAAAAGGATCGCGTC 59.128 50.000 5.77 2.75 0.00 5.19
762 802 1.135972 CCACAAAAAGGATCGCGTCAG 60.136 52.381 5.77 0.00 0.00 3.51
929 988 1.261238 GGACAGAGCCACAGCCTACT 61.261 60.000 0.00 0.00 41.25 2.57
1249 1319 4.410400 CCCGTGGACCAAGAGGGC 62.410 72.222 15.55 0.00 44.93 5.19
1470 1544 2.756321 TTTCCCCTTTCCGCATCGCA 62.756 55.000 0.00 0.00 0.00 5.10
1471 1545 2.516930 CCCCTTTCCGCATCGCAT 60.517 61.111 0.00 0.00 0.00 4.73
1472 1546 1.227823 CCCCTTTCCGCATCGCATA 60.228 57.895 0.00 0.00 0.00 3.14
1473 1547 1.230635 CCCCTTTCCGCATCGCATAG 61.231 60.000 0.00 0.00 0.00 2.23
1474 1548 0.532862 CCCTTTCCGCATCGCATAGT 60.533 55.000 0.00 0.00 0.00 2.12
1475 1549 1.270094 CCCTTTCCGCATCGCATAGTA 60.270 52.381 0.00 0.00 0.00 1.82
1476 1550 1.792949 CCTTTCCGCATCGCATAGTAC 59.207 52.381 0.00 0.00 0.00 2.73
1477 1551 2.545952 CCTTTCCGCATCGCATAGTACT 60.546 50.000 0.00 0.00 0.00 2.73
1478 1552 3.305131 CCTTTCCGCATCGCATAGTACTA 60.305 47.826 4.77 4.77 0.00 1.82
1479 1553 3.554259 TTCCGCATCGCATAGTACTAG 57.446 47.619 8.85 2.30 0.00 2.57
1480 1554 1.810755 TCCGCATCGCATAGTACTAGG 59.189 52.381 10.20 10.20 0.00 3.02
1481 1555 1.810755 CCGCATCGCATAGTACTAGGA 59.189 52.381 18.37 10.52 0.00 2.94
1482 1556 2.414293 CCGCATCGCATAGTACTAGGAC 60.414 54.545 18.37 8.51 0.00 3.85
1483 1557 2.414293 CGCATCGCATAGTACTAGGACC 60.414 54.545 18.37 0.71 0.00 4.46
1484 1558 2.820787 GCATCGCATAGTACTAGGACCT 59.179 50.000 18.37 0.00 0.00 3.85
1485 1559 3.119779 GCATCGCATAGTACTAGGACCTC 60.120 52.174 18.37 0.00 0.00 3.85
1486 1560 2.763933 TCGCATAGTACTAGGACCTCG 58.236 52.381 18.37 11.53 0.00 4.63
1487 1561 1.197264 CGCATAGTACTAGGACCTCGC 59.803 57.143 18.37 0.61 0.00 5.03
1496 1570 2.496470 ACTAGGACCTCGCTTTTACTGG 59.504 50.000 0.00 0.00 0.00 4.00
1569 1649 2.324560 ATTTCGCCCCTCCCCCATT 61.325 57.895 0.00 0.00 0.00 3.16
1589 1669 1.629353 TCCTCCACTACACTCGACTCT 59.371 52.381 0.00 0.00 0.00 3.24
1659 1739 1.001248 ATGCAGCCCAAGCAGGAAT 59.999 52.632 0.00 0.00 46.36 3.01
1666 1746 1.631405 CCCAAGCAGGAATGGACAAA 58.369 50.000 0.00 0.00 41.22 2.83
1678 1758 4.321527 GGAATGGACAAAAGAAAGCTCTGG 60.322 45.833 0.00 0.00 30.03 3.86
1679 1759 2.586425 TGGACAAAAGAAAGCTCTGGG 58.414 47.619 0.00 0.00 30.03 4.45
1680 1760 2.174639 TGGACAAAAGAAAGCTCTGGGA 59.825 45.455 0.00 0.00 30.03 4.37
1681 1761 3.181429 TGGACAAAAGAAAGCTCTGGGAT 60.181 43.478 0.00 0.00 30.03 3.85
1682 1762 3.829026 GGACAAAAGAAAGCTCTGGGATT 59.171 43.478 0.00 0.00 30.03 3.01
1683 1763 4.321527 GGACAAAAGAAAGCTCTGGGATTG 60.322 45.833 0.00 0.00 30.03 2.67
1687 1767 0.392998 GAAAGCTCTGGGATTGCCGA 60.393 55.000 0.00 0.00 33.83 5.54
1688 1768 0.257039 AAAGCTCTGGGATTGCCGAT 59.743 50.000 0.00 0.00 33.83 4.18
1689 1769 1.131638 AAGCTCTGGGATTGCCGATA 58.868 50.000 0.00 0.00 33.83 2.92
1690 1770 1.356124 AGCTCTGGGATTGCCGATAT 58.644 50.000 0.00 0.00 33.83 1.63
1691 1771 1.277557 AGCTCTGGGATTGCCGATATC 59.722 52.381 0.00 0.00 33.83 1.63
1692 1772 1.677217 GCTCTGGGATTGCCGATATCC 60.677 57.143 0.00 0.00 40.73 2.59
1694 1774 1.625315 TCTGGGATTGCCGATATCCTG 59.375 52.381 0.00 0.00 41.13 3.86
1695 1775 0.036732 TGGGATTGCCGATATCCTGC 59.963 55.000 0.00 1.01 41.13 4.85
1696 1776 0.678048 GGGATTGCCGATATCCTGCC 60.678 60.000 8.87 0.00 41.13 4.85
1697 1777 0.678048 GGATTGCCGATATCCTGCCC 60.678 60.000 8.87 1.22 38.81 5.36
1699 1779 2.469465 ATTGCCGATATCCTGCCCCG 62.469 60.000 8.87 0.00 0.00 5.73
1701 1783 2.923035 CCGATATCCTGCCCCGGT 60.923 66.667 0.00 0.00 35.83 5.28
1706 1788 1.681264 GATATCCTGCCCCGGTTTTTG 59.319 52.381 0.00 0.00 0.00 2.44
1707 1789 0.406361 TATCCTGCCCCGGTTTTTGT 59.594 50.000 0.00 0.00 0.00 2.83
1708 1790 0.406361 ATCCTGCCCCGGTTTTTGTA 59.594 50.000 0.00 0.00 0.00 2.41
1722 1804 4.695928 GGTTTTTGTAGGTGGCTCTAGAAG 59.304 45.833 0.00 0.00 0.00 2.85
1724 1806 3.468071 TTGTAGGTGGCTCTAGAAGGA 57.532 47.619 0.00 0.00 0.00 3.36
1727 1809 4.362677 TGTAGGTGGCTCTAGAAGGAATT 58.637 43.478 0.00 0.00 0.00 2.17
1728 1810 3.922171 AGGTGGCTCTAGAAGGAATTG 57.078 47.619 0.00 0.00 0.00 2.32
1729 1811 2.507471 AGGTGGCTCTAGAAGGAATTGG 59.493 50.000 0.00 0.00 0.00 3.16
1731 1813 3.137360 GGTGGCTCTAGAAGGAATTGGAT 59.863 47.826 0.00 0.00 0.00 3.41
1732 1814 4.133078 GTGGCTCTAGAAGGAATTGGATG 58.867 47.826 0.00 0.00 0.00 3.51
1733 1815 3.145286 GGCTCTAGAAGGAATTGGATGC 58.855 50.000 0.00 0.00 0.00 3.91
1734 1816 2.805099 GCTCTAGAAGGAATTGGATGCG 59.195 50.000 0.00 0.00 0.00 4.73
1735 1817 3.397482 CTCTAGAAGGAATTGGATGCGG 58.603 50.000 0.00 0.00 0.00 5.69
1736 1818 2.771943 TCTAGAAGGAATTGGATGCGGT 59.228 45.455 0.00 0.00 0.00 5.68
1738 1820 3.644966 AGAAGGAATTGGATGCGGTAA 57.355 42.857 0.00 0.00 0.00 2.85
1741 1823 4.956075 AGAAGGAATTGGATGCGGTAAATT 59.044 37.500 0.00 0.00 0.00 1.82
1742 1824 6.126409 AGAAGGAATTGGATGCGGTAAATTA 58.874 36.000 0.00 0.00 0.00 1.40
1743 1825 6.777580 AGAAGGAATTGGATGCGGTAAATTAT 59.222 34.615 0.00 0.00 0.00 1.28
1744 1826 6.331369 AGGAATTGGATGCGGTAAATTATG 57.669 37.500 0.00 0.00 0.00 1.90
1745 1827 5.833131 AGGAATTGGATGCGGTAAATTATGT 59.167 36.000 0.00 0.00 0.00 2.29
1746 1828 6.323739 AGGAATTGGATGCGGTAAATTATGTT 59.676 34.615 0.00 0.00 0.00 2.71
1747 1829 7.504238 AGGAATTGGATGCGGTAAATTATGTTA 59.496 33.333 0.00 0.00 0.00 2.41
1748 1830 7.593644 GGAATTGGATGCGGTAAATTATGTTAC 59.406 37.037 0.00 0.00 33.91 2.50
1749 1831 6.380095 TTGGATGCGGTAAATTATGTTACC 57.620 37.500 4.37 4.37 46.54 2.85
1763 1845 8.800370 AATTATGTTACCATACACACACATCA 57.200 30.769 0.00 0.00 33.29 3.07
1764 1846 7.603963 TTATGTTACCATACACACACATCAC 57.396 36.000 0.00 0.00 33.29 3.06
1765 1847 4.962155 TGTTACCATACACACACATCACA 58.038 39.130 0.00 0.00 0.00 3.58
1766 1848 5.555966 TGTTACCATACACACACATCACAT 58.444 37.500 0.00 0.00 0.00 3.21
1767 1849 5.411053 TGTTACCATACACACACATCACATG 59.589 40.000 0.00 0.00 0.00 3.21
1768 1850 4.284829 ACCATACACACACATCACATGA 57.715 40.909 0.00 0.00 0.00 3.07
1795 1877 2.163815 GAGCACATTTTGATCTGCAGCT 59.836 45.455 9.47 0.00 37.67 4.24
1852 1934 1.889170 TCACAGCTCATCTTCGTCAGT 59.111 47.619 0.00 0.00 0.00 3.41
1853 1935 1.991264 CACAGCTCATCTTCGTCAGTG 59.009 52.381 0.00 0.00 0.00 3.66
1854 1936 1.889170 ACAGCTCATCTTCGTCAGTGA 59.111 47.619 0.00 0.00 0.00 3.41
1863 1950 7.568199 TCATCTTCGTCAGTGATAGTTCATA 57.432 36.000 0.00 0.00 33.56 2.15
1875 1962 2.821991 AGTTCATAGCAGCGTATCCC 57.178 50.000 0.00 0.00 0.00 3.85
1876 1963 2.039418 AGTTCATAGCAGCGTATCCCA 58.961 47.619 0.00 0.00 0.00 4.37
1877 1964 2.634940 AGTTCATAGCAGCGTATCCCAT 59.365 45.455 0.00 0.00 0.00 4.00
1878 1965 3.071602 AGTTCATAGCAGCGTATCCCATT 59.928 43.478 0.00 0.00 0.00 3.16
1879 1966 3.769739 TCATAGCAGCGTATCCCATTT 57.230 42.857 0.00 0.00 0.00 2.32
1880 1967 4.882842 TCATAGCAGCGTATCCCATTTA 57.117 40.909 0.00 0.00 0.00 1.40
1881 1968 4.566004 TCATAGCAGCGTATCCCATTTAC 58.434 43.478 0.00 0.00 0.00 2.01
2023 2113 2.741878 TAGCTTGGTCGGGGTGTCCT 62.742 60.000 0.00 0.00 0.00 3.85
2027 2117 0.409092 TTGGTCGGGGTGTCCTACTA 59.591 55.000 0.00 0.00 0.00 1.82
2028 2118 0.033796 TGGTCGGGGTGTCCTACTAG 60.034 60.000 0.00 0.00 0.00 2.57
2110 2203 1.500474 TTAGCCCTATCAGCTGCTGT 58.500 50.000 27.24 17.41 41.71 4.40
2118 2211 2.096220 ATCAGCTGCTGTTGTCTCAG 57.904 50.000 27.24 0.44 38.35 3.35
2166 2259 0.890683 GCTTTGTGCTAAGTGGCCAT 59.109 50.000 9.72 0.00 38.95 4.40
2187 2280 5.243730 CCATATGGTGTTTGTTCAGGAAAGT 59.756 40.000 14.09 0.00 0.00 2.66
2192 2285 4.157840 GGTGTTTGTTCAGGAAAGTTGAGT 59.842 41.667 0.00 0.00 0.00 3.41
2248 2348 7.624360 TGTGCGTAATTCATTTCTATCCTTT 57.376 32.000 0.00 0.00 0.00 3.11
2296 2396 1.766494 TGGCACCTTCATATGGCTTG 58.234 50.000 2.13 0.00 41.74 4.01
2302 2402 3.947196 CACCTTCATATGGCTTGTAGCAA 59.053 43.478 2.13 0.00 44.75 3.91
2343 2446 9.636789 TTGTATGGTGTGATATGTAGTAGTAGT 57.363 33.333 0.00 0.00 0.00 2.73
2417 2520 1.808945 GATTTGGCAGACAGTGTGGAG 59.191 52.381 0.00 0.00 0.00 3.86
2470 2574 6.595326 CACAGCAAGGTCTAAATCACATTCTA 59.405 38.462 0.00 0.00 0.00 2.10
2498 2602 5.105392 TGCAATATTGGTTCTCCATCCAAAC 60.105 40.000 17.02 0.00 45.08 2.93
2503 2607 1.278127 GGTTCTCCATCCAAACCTCGA 59.722 52.381 0.00 0.00 39.48 4.04
2504 2608 2.622436 GTTCTCCATCCAAACCTCGAG 58.378 52.381 5.13 5.13 0.00 4.04
2516 2620 1.754621 CCTCGAGAGCCACAGCCTA 60.755 63.158 15.71 0.00 41.25 3.93
2518 2622 2.010582 CTCGAGAGCCACAGCCTACC 62.011 65.000 6.58 0.00 41.25 3.18
2568 2672 2.288666 GCTCACTGTGAAGTGTGGAAA 58.711 47.619 12.16 0.00 40.45 3.13
2576 2680 1.239347 GAAGTGTGGAAACCTCCTGC 58.761 55.000 0.00 0.00 42.94 4.85
2643 2747 3.907221 CCCCATCATGGAAATCAAGAGT 58.093 45.455 4.75 0.00 40.96 3.24
2645 2749 3.635373 CCCATCATGGAAATCAAGAGTGG 59.365 47.826 4.75 0.00 40.96 4.00
2661 2767 7.152645 TCAAGAGTGGTCAGTTAATTAGACAC 58.847 38.462 5.89 0.00 34.04 3.67
2670 2782 4.159879 CAGTTAATTAGACACGGGAGGAGT 59.840 45.833 0.00 0.00 0.00 3.85
2698 2811 7.107542 TGAAGTACAAGTATAAATGGTGTCCC 58.892 38.462 0.00 0.00 0.00 4.46
2714 2827 4.202326 GGTGTCCCTGTCTAAGAACTTGAA 60.202 45.833 0.00 0.00 0.00 2.69
2723 2836 8.983724 CCTGTCTAAGAACTTGAACTTTAGAAG 58.016 37.037 0.00 0.00 0.00 2.85
2736 2852 6.372659 TGAACTTTAGAAGCTTTGATGCTAGG 59.627 38.462 0.00 0.00 43.24 3.02
2744 2860 2.686915 GCTTTGATGCTAGGCTTCACAT 59.313 45.455 7.44 0.00 41.25 3.21
2748 2864 5.818136 TTGATGCTAGGCTTCACATAAAC 57.182 39.130 7.44 0.00 41.25 2.01
2749 2865 5.102953 TGATGCTAGGCTTCACATAAACT 57.897 39.130 0.00 0.00 37.70 2.66
2752 2869 6.763135 TGATGCTAGGCTTCACATAAACTTAG 59.237 38.462 0.00 0.00 37.70 2.18
2754 2871 4.273724 GCTAGGCTTCACATAAACTTAGGC 59.726 45.833 0.00 0.00 0.00 3.93
2757 2874 2.223272 GCTTCACATAAACTTAGGCGGC 60.223 50.000 0.00 0.00 0.00 6.53
2767 2884 0.247736 CTTAGGCGGCTGTCTCTTGT 59.752 55.000 23.55 0.00 0.00 3.16
2769 2886 0.685097 TAGGCGGCTGTCTCTTGTTT 59.315 50.000 23.55 0.00 0.00 2.83
2799 2916 0.813210 GCCACTACCATGAGCTGCTC 60.813 60.000 22.38 22.38 0.00 4.26
2820 2937 2.117156 AGCCATGCTCATGCGGTTC 61.117 57.895 4.40 0.00 43.34 3.62
2821 2938 2.409055 GCCATGCTCATGCGGTTCA 61.409 57.895 4.40 0.00 43.34 3.18
2822 2939 1.936436 GCCATGCTCATGCGGTTCAA 61.936 55.000 4.40 0.00 43.34 2.69
2824 2941 0.179156 CATGCTCATGCGGTTCAACC 60.179 55.000 0.00 0.00 43.34 3.77
2826 2943 2.700773 GCTCATGCGGTTCAACCCC 61.701 63.158 0.00 0.00 33.75 4.95
2827 2944 2.034999 TCATGCGGTTCAACCCCC 59.965 61.111 0.00 0.00 33.75 5.40
2830 2947 4.966787 TGCGGTTCAACCCCCTGC 62.967 66.667 0.00 0.00 33.75 4.85
2838 2955 1.380785 CAACCCCCTGCTGCATGAT 60.381 57.895 1.31 0.00 0.00 2.45
2891 3015 3.557264 GCATACCCAGCATACCCTTAGTC 60.557 52.174 0.00 0.00 0.00 2.59
2906 3030 4.683334 GTCGTGCCGCCTGTTTGC 62.683 66.667 0.00 0.00 0.00 3.68
2912 3036 2.844451 GCCGCCTGTTTGCTGTTCA 61.844 57.895 0.00 0.00 0.00 3.18
2914 3038 1.008538 CGCCTGTTTGCTGTTCACC 60.009 57.895 0.00 0.00 0.00 4.02
2917 3041 0.307760 CCTGTTTGCTGTTCACCGAC 59.692 55.000 0.00 0.00 0.00 4.79
2931 3055 0.252284 ACCGACAGATTGAGGGAGGT 60.252 55.000 0.00 0.00 0.00 3.85
2935 3059 2.704572 GACAGATTGAGGGAGGTGTTG 58.295 52.381 0.00 0.00 0.00 3.33
2936 3060 2.303022 GACAGATTGAGGGAGGTGTTGA 59.697 50.000 0.00 0.00 0.00 3.18
2937 3061 2.039084 ACAGATTGAGGGAGGTGTTGAC 59.961 50.000 0.00 0.00 0.00 3.18
2944 3068 1.070786 GGAGGTGTTGACGGCTTCA 59.929 57.895 0.00 0.00 0.00 3.02
2948 3072 1.145803 GGTGTTGACGGCTTCAGTAC 58.854 55.000 0.00 0.00 34.94 2.73
2952 3076 2.288213 TGTTGACGGCTTCAGTACTCAG 60.288 50.000 0.00 0.00 34.94 3.35
2954 3078 0.889306 GACGGCTTCAGTACTCAGGT 59.111 55.000 0.00 0.00 0.00 4.00
2958 3082 1.066787 GGCTTCAGTACTCAGGTGGAC 60.067 57.143 0.00 0.00 0.00 4.02
2963 3087 1.887198 CAGTACTCAGGTGGACGAGTT 59.113 52.381 0.00 0.00 42.41 3.01
2969 3093 0.307760 CAGGTGGACGAGTTGTTTGC 59.692 55.000 0.00 0.00 0.00 3.68
2970 3094 1.157870 AGGTGGACGAGTTGTTTGCG 61.158 55.000 0.00 0.00 0.00 4.85
2971 3095 1.433837 GGTGGACGAGTTGTTTGCGT 61.434 55.000 0.00 0.00 41.45 5.24
2972 3096 1.210870 GTGGACGAGTTGTTTGCGTA 58.789 50.000 0.00 0.00 38.51 4.42
2973 3097 1.071041 GTGGACGAGTTGTTTGCGTAC 60.071 52.381 0.00 0.00 38.51 3.67
2974 3098 1.202440 TGGACGAGTTGTTTGCGTACT 60.202 47.619 0.00 0.00 39.50 2.73
2975 3099 1.862827 GGACGAGTTGTTTGCGTACTT 59.137 47.619 0.00 0.00 38.51 2.24
2976 3100 3.052036 GGACGAGTTGTTTGCGTACTTA 58.948 45.455 0.00 0.00 38.51 2.24
2977 3101 3.676646 GGACGAGTTGTTTGCGTACTTAT 59.323 43.478 0.00 0.00 38.51 1.73
2978 3102 4.151157 GGACGAGTTGTTTGCGTACTTATT 59.849 41.667 0.00 0.00 38.51 1.40
2980 3104 6.128849 GGACGAGTTGTTTGCGTACTTATTTA 60.129 38.462 0.00 0.00 38.51 1.40
2981 3105 7.176285 ACGAGTTGTTTGCGTACTTATTTAA 57.824 32.000 0.00 0.00 36.37 1.52
2983 3107 7.742963 ACGAGTTGTTTGCGTACTTATTTAATG 59.257 33.333 0.00 0.00 36.37 1.90
2984 3108 7.215568 CGAGTTGTTTGCGTACTTATTTAATGG 59.784 37.037 0.00 0.00 0.00 3.16
2985 3109 7.878036 AGTTGTTTGCGTACTTATTTAATGGT 58.122 30.769 0.00 0.00 0.00 3.55
2986 3110 7.806014 AGTTGTTTGCGTACTTATTTAATGGTG 59.194 33.333 0.00 0.00 0.00 4.17
2987 3111 7.204496 TGTTTGCGTACTTATTTAATGGTGT 57.796 32.000 0.00 0.00 0.00 4.16
3006 3139 4.755123 GGTGTGCTATCAGTTAGTGTTGTT 59.245 41.667 0.00 0.00 0.00 2.83
3008 3141 6.090898 GGTGTGCTATCAGTTAGTGTTGTTAG 59.909 42.308 0.00 0.00 0.00 2.34
3009 3142 6.090898 GTGTGCTATCAGTTAGTGTTGTTAGG 59.909 42.308 0.00 0.00 0.00 2.69
3010 3143 6.014925 TGTGCTATCAGTTAGTGTTGTTAGGA 60.015 38.462 0.00 0.00 0.00 2.94
3012 3145 7.063544 GTGCTATCAGTTAGTGTTGTTAGGAAG 59.936 40.741 0.00 0.00 0.00 3.46
3014 3147 6.681729 ATCAGTTAGTGTTGTTAGGAAGGA 57.318 37.500 0.00 0.00 0.00 3.36
3015 3148 6.097915 TCAGTTAGTGTTGTTAGGAAGGAG 57.902 41.667 0.00 0.00 0.00 3.69
3016 3149 5.601313 TCAGTTAGTGTTGTTAGGAAGGAGT 59.399 40.000 0.00 0.00 0.00 3.85
3017 3150 5.696724 CAGTTAGTGTTGTTAGGAAGGAGTG 59.303 44.000 0.00 0.00 0.00 3.51
3019 3152 3.046374 AGTGTTGTTAGGAAGGAGTGGT 58.954 45.455 0.00 0.00 0.00 4.16
3020 3153 3.139077 GTGTTGTTAGGAAGGAGTGGTG 58.861 50.000 0.00 0.00 0.00 4.17
3021 3154 2.775384 TGTTGTTAGGAAGGAGTGGTGT 59.225 45.455 0.00 0.00 0.00 4.16
3022 3155 3.139077 GTTGTTAGGAAGGAGTGGTGTG 58.861 50.000 0.00 0.00 0.00 3.82
3023 3156 1.697432 TGTTAGGAAGGAGTGGTGTGG 59.303 52.381 0.00 0.00 0.00 4.17
3024 3157 1.975680 GTTAGGAAGGAGTGGTGTGGA 59.024 52.381 0.00 0.00 0.00 4.02
3039 3172 2.808543 GTGTGGAGTGTGGACTGAAATC 59.191 50.000 0.00 0.00 30.16 2.17
3077 3214 1.256812 AGCATTTGGCCCAACTGTAC 58.743 50.000 14.47 0.30 46.50 2.90
3087 3224 2.361438 GCCCAACTGTACTATAGACGCT 59.639 50.000 6.78 0.00 0.00 5.07
3088 3225 3.795826 GCCCAACTGTACTATAGACGCTG 60.796 52.174 6.78 3.09 0.00 5.18
3089 3226 3.380637 CCCAACTGTACTATAGACGCTGT 59.619 47.826 6.78 3.67 0.00 4.40
3090 3227 4.352039 CCAACTGTACTATAGACGCTGTG 58.648 47.826 6.78 0.00 0.00 3.66
3091 3228 3.694535 ACTGTACTATAGACGCTGTGC 57.305 47.619 6.78 0.00 0.00 4.57
3092 3229 2.358267 ACTGTACTATAGACGCTGTGCC 59.642 50.000 6.78 0.00 0.00 5.01
3096 3233 0.387202 CTATAGACGCTGTGCCTGCT 59.613 55.000 0.00 0.00 0.00 4.24
3097 3234 1.609072 CTATAGACGCTGTGCCTGCTA 59.391 52.381 0.00 0.00 0.00 3.49
3103 3240 1.942657 ACGCTGTGCCTGCTAAATATG 59.057 47.619 0.00 0.00 0.00 1.78
3156 3423 6.539173 TGGATGTACATCTGTTTTTGGTAGT 58.461 36.000 29.87 0.00 37.92 2.73
3212 3479 6.670695 AATTAGGTTCTCAAAGTTGGCAAT 57.329 33.333 1.92 0.00 0.00 3.56
3213 3480 6.670695 ATTAGGTTCTCAAAGTTGGCAATT 57.329 33.333 1.92 0.00 0.00 2.32
3225 3492 3.443681 AGTTGGCAATTCGTCCCATAAAG 59.556 43.478 1.92 0.00 0.00 1.85
3228 3495 3.013921 GGCAATTCGTCCCATAAAGTGA 58.986 45.455 0.00 0.00 0.00 3.41
3241 3508 4.747108 CCATAAAGTGAATGGCTCGACTAG 59.253 45.833 0.00 0.00 37.67 2.57
3255 3522 4.319477 GCTCGACTAGATCTTGTCTGCTAG 60.319 50.000 27.22 20.43 37.83 3.42
3256 3523 4.130857 TCGACTAGATCTTGTCTGCTAGG 58.869 47.826 27.22 15.14 37.83 3.02
3257 3524 4.130857 CGACTAGATCTTGTCTGCTAGGA 58.869 47.826 27.22 0.00 37.83 2.94
3258 3525 4.213270 CGACTAGATCTTGTCTGCTAGGAG 59.787 50.000 27.22 4.60 37.83 3.69
3268 3535 6.381133 TCTTGTCTGCTAGGAGTATTCATGAA 59.619 38.462 11.26 11.26 0.00 2.57
3273 3540 6.381133 TCTGCTAGGAGTATTCATGAAGAACA 59.619 38.462 20.07 3.03 39.49 3.18
3294 3561 3.003378 CACTTCATGCATGCTAGGATGTG 59.997 47.826 23.28 22.70 38.35 3.21
3302 3569 5.056480 TGCATGCTAGGATGTGTATGTTAC 58.944 41.667 23.28 6.03 0.00 2.50
3331 3598 8.306761 GTTTGAAATGTTGATTGGAGGAGTATT 58.693 33.333 0.00 0.00 0.00 1.89
3333 3600 6.377996 TGAAATGTTGATTGGAGGAGTATTGG 59.622 38.462 0.00 0.00 0.00 3.16
3336 3603 4.785914 TGTTGATTGGAGGAGTATTGGGTA 59.214 41.667 0.00 0.00 0.00 3.69
3337 3604 5.251932 TGTTGATTGGAGGAGTATTGGGTAA 59.748 40.000 0.00 0.00 0.00 2.85
3338 3605 5.367945 TGATTGGAGGAGTATTGGGTAAC 57.632 43.478 0.00 0.00 0.00 2.50
3351 3618 7.565680 AGTATTGGGTAACTATGTTGGAAGAG 58.434 38.462 0.00 0.00 0.00 2.85
3355 3622 7.743116 TGGGTAACTATGTTGGAAGAGATTA 57.257 36.000 0.00 0.00 0.00 1.75
3392 3659 1.617850 TGATTGAGCGCCACCAAAATT 59.382 42.857 2.29 0.00 0.00 1.82
3393 3660 2.822561 TGATTGAGCGCCACCAAAATTA 59.177 40.909 2.29 0.00 0.00 1.40
3394 3661 3.256879 TGATTGAGCGCCACCAAAATTAA 59.743 39.130 2.29 0.00 0.00 1.40
3395 3662 3.735237 TTGAGCGCCACCAAAATTAAA 57.265 38.095 2.29 0.00 0.00 1.52
3396 3663 3.951775 TGAGCGCCACCAAAATTAAAT 57.048 38.095 2.29 0.00 0.00 1.40
3400 3673 4.831107 AGCGCCACCAAAATTAAATTCAT 58.169 34.783 2.29 0.00 0.00 2.57
3444 3718 1.533625 TCTGCCAAATCACCTTTCCG 58.466 50.000 0.00 0.00 0.00 4.30
3447 3721 1.074084 TGCCAAATCACCTTTCCGGTA 59.926 47.619 0.00 0.00 46.94 4.02
3448 3722 1.743394 GCCAAATCACCTTTCCGGTAG 59.257 52.381 0.00 0.00 46.94 3.18
3469 3743 7.514125 CGGTAGTGATATAGAAAAACGAAACGG 60.514 40.741 0.00 0.00 0.00 4.44
3483 3757 5.581126 ACGAAACGGTATATCACCTGTTA 57.419 39.130 0.00 0.00 46.19 2.41
3493 3767 1.375523 CACCTGTTACCGACCCTGC 60.376 63.158 0.00 0.00 0.00 4.85
3498 3772 0.828022 TGTTACCGACCCTGCATAGG 59.172 55.000 1.40 1.40 44.18 2.57
3507 3781 0.107897 CCCTGCATAGGCGTGTAACA 60.108 55.000 0.00 0.00 45.35 2.41
3510 3784 1.599071 CTGCATAGGCGTGTAACATGG 59.401 52.381 0.00 0.00 45.35 3.66
3520 3794 4.495184 GGCGTGTAACATGGCAAGTATAAC 60.495 45.833 0.00 0.00 43.92 1.89
3525 3799 3.730215 ACATGGCAAGTATAACCCACA 57.270 42.857 0.00 0.00 0.00 4.17
3547 3828 6.869913 CACAACAAGATTCAATATTGGCAGTT 59.130 34.615 15.36 9.00 35.87 3.16
3550 3831 9.421806 CAACAAGATTCAATATTGGCAGTTTTA 57.578 29.630 15.36 0.00 35.87 1.52
3565 3846 8.984891 TGGCAGTTTTAAAATGTCATATGAAG 57.015 30.769 8.36 0.00 0.00 3.02
3568 3849 7.010460 GCAGTTTTAAAATGTCATATGAAGGCC 59.990 37.037 7.07 0.00 0.00 5.19
3570 3851 8.815912 AGTTTTAAAATGTCATATGAAGGCCTT 58.184 29.630 20.65 20.65 0.00 4.35
3577 3858 8.537728 AATGTCATATGAAGGCCTTTTTCATA 57.462 30.769 21.54 21.95 46.04 2.15
3607 3888 4.989279 AATGTGTTTGTCAAGAACAGCT 57.011 36.364 8.02 0.00 39.58 4.24
3609 3890 6.449635 AATGTGTTTGTCAAGAACAGCTTA 57.550 33.333 8.02 0.00 39.58 3.09
3613 3894 4.947388 TGTTTGTCAAGAACAGCTTAGGTT 59.053 37.500 0.00 0.00 39.58 3.50
3620 3901 6.877322 GTCAAGAACAGCTTAGGTTTATGGTA 59.123 38.462 0.00 0.00 34.31 3.25
3644 3926 3.554934 TGAGCTTTGTTCCATTGTCTGT 58.445 40.909 0.00 0.00 0.00 3.41
3699 3984 7.439157 AGTTCATTTCTCGATGACAAATCAA 57.561 32.000 0.00 0.00 38.69 2.57
3705 3991 5.784750 TCTCGATGACAAATCAACATGAC 57.215 39.130 0.00 0.00 38.69 3.06
3728 4014 5.190528 ACTGTTACTGAATCTGGACCATCAT 59.809 40.000 0.00 0.00 0.00 2.45
3745 4031 1.213678 TCATTCCCAGCTTCCATCCAG 59.786 52.381 0.00 0.00 0.00 3.86
3759 4045 6.238869 GCTTCCATCCAGGTTCAGATAAATTC 60.239 42.308 0.00 0.00 39.02 2.17
3767 4053 6.261826 CCAGGTTCAGATAAATTCCTGATCAC 59.738 42.308 10.10 3.98 43.28 3.06
3769 4055 5.532779 GGTTCAGATAAATTCCTGATCACCC 59.467 44.000 0.00 5.77 38.97 4.61
3775 4061 1.002069 ATTCCTGATCACCCCTTGCA 58.998 50.000 0.00 0.00 0.00 4.08
3781 4067 3.328931 CCTGATCACCCCTTGCATAGTAT 59.671 47.826 0.00 0.00 0.00 2.12
3785 4071 1.907240 ACCCCTTGCATAGTATGGGT 58.093 50.000 12.07 7.24 41.40 4.51
3791 4077 3.117888 CCTTGCATAGTATGGGTTCCAGT 60.118 47.826 12.07 0.00 36.75 4.00
3801 4087 3.036431 GGTTCCAGTTTCCACCCAG 57.964 57.895 0.00 0.00 0.00 4.45
3850 4136 4.600032 TGCATTATTCAAGTTGCATAGCG 58.400 39.130 0.00 0.00 39.98 4.26
3852 4138 5.295540 TGCATTATTCAAGTTGCATAGCGTA 59.704 36.000 0.00 0.00 39.98 4.42
3859 4145 3.543680 AGTTGCATAGCGTAAGTGGAT 57.456 42.857 0.00 0.00 41.68 3.41
3864 4150 3.181466 TGCATAGCGTAAGTGGATGTCAT 60.181 43.478 0.00 0.00 41.68 3.06
3871 4157 4.202080 GCGTAAGTGGATGTCATGTACCTA 60.202 45.833 0.00 0.00 41.68 3.08
3872 4158 5.520632 CGTAAGTGGATGTCATGTACCTAG 58.479 45.833 0.00 0.00 0.00 3.02
3874 4160 5.344743 AAGTGGATGTCATGTACCTAGTG 57.655 43.478 0.00 0.00 0.00 2.74
3885 4171 3.937814 TGTACCTAGTGCATGACAAAGG 58.062 45.455 0.00 7.44 38.91 3.11
3886 4172 3.580895 TGTACCTAGTGCATGACAAAGGA 59.419 43.478 18.40 7.01 37.22 3.36
3892 4178 5.882557 CCTAGTGCATGACAAAGGAATACTT 59.117 40.000 0.00 0.00 42.52 2.24
3896 4182 4.156556 TGCATGACAAAGGAATACTTGCTC 59.843 41.667 0.00 0.00 39.96 4.26
3902 4188 5.735766 ACAAAGGAATACTTGCTCTAGGAC 58.264 41.667 0.00 0.00 39.96 3.85
3908 4194 1.650528 ACTTGCTCTAGGACCTGCTT 58.349 50.000 3.53 0.00 0.00 3.91
3984 4270 3.732849 CTCAGGGGCAGGGGGAAC 61.733 72.222 0.00 0.00 0.00 3.62
3992 4278 1.456287 GCAGGGGGAACAAGACTGT 59.544 57.895 0.00 0.00 37.39 3.55
3999 4285 3.557264 GGGGGAACAAGACTGTAGAAGTG 60.557 52.174 0.00 0.00 40.07 3.16
4000 4286 3.557264 GGGGAACAAGACTGTAGAAGTGG 60.557 52.174 0.00 0.00 40.07 4.00
4055 4341 4.183223 TGTGCCAGCCCTTATATCAAAT 57.817 40.909 0.00 0.00 0.00 2.32
4083 4369 4.591929 TGCCCCTAATACAAGTAACCAAC 58.408 43.478 0.00 0.00 0.00 3.77
4088 4374 7.580007 CCCCTAATACAAGTAACCAACCTTAT 58.420 38.462 0.00 0.00 0.00 1.73
4089 4375 7.718314 CCCCTAATACAAGTAACCAACCTTATC 59.282 40.741 0.00 0.00 0.00 1.75
4090 4376 8.491958 CCCTAATACAAGTAACCAACCTTATCT 58.508 37.037 0.00 0.00 0.00 1.98
4091 4377 9.901172 CCTAATACAAGTAACCAACCTTATCTT 57.099 33.333 0.00 0.00 0.00 2.40
4128 4461 7.510549 AACTTGCTTACATGAATAACTGTGT 57.489 32.000 0.00 0.00 0.00 3.72
4154 4501 1.528129 GTGCTCCTCCAAGGACTTTG 58.472 55.000 0.00 0.00 40.06 2.77
4199 4546 4.142116 TGCTGCTGACAATGATTTTATGGG 60.142 41.667 0.00 0.00 0.00 4.00
4253 4604 9.083422 TGTTGGATGTAGGAAATTCAAATGTTA 57.917 29.630 0.00 0.00 0.00 2.41
4293 4644 9.608617 GTTAACTTTTTACTTCAGTGATTAGGC 57.391 33.333 0.00 0.00 0.00 3.93
4295 4646 7.440523 ACTTTTTACTTCAGTGATTAGGCTG 57.559 36.000 0.00 0.00 0.00 4.85
4296 4647 6.998673 ACTTTTTACTTCAGTGATTAGGCTGT 59.001 34.615 0.00 0.00 34.57 4.40
4297 4648 6.801539 TTTTACTTCAGTGATTAGGCTGTG 57.198 37.500 0.00 0.00 34.57 3.66
4307 4658 1.808411 TTAGGCTGTGTTGTAGCTGC 58.192 50.000 0.00 0.00 40.92 5.25
4329 4680 4.186926 CTGCTCTTGTACTGTGCATATGT 58.813 43.478 4.29 0.00 34.21 2.29
4366 5035 6.263168 ACTTGGGTTTTCAGAATCAGTTAGTG 59.737 38.462 0.00 0.00 0.00 2.74
4372 5041 7.442666 GGTTTTCAGAATCAGTTAGTGACTCTT 59.557 37.037 0.00 0.00 38.67 2.85
4479 5148 4.278170 TGTGGAACTTGTTTGCCTGAATAG 59.722 41.667 0.00 0.00 38.04 1.73
4480 5149 4.518970 GTGGAACTTGTTTGCCTGAATAGA 59.481 41.667 0.00 0.00 0.00 1.98
4481 5150 4.518970 TGGAACTTGTTTGCCTGAATAGAC 59.481 41.667 0.00 0.00 0.00 2.59
4483 5152 5.183904 GGAACTTGTTTGCCTGAATAGACAT 59.816 40.000 0.00 0.00 0.00 3.06
4589 5294 6.530120 TGTTTTCTCTCTTTACCAGCACATA 58.470 36.000 0.00 0.00 0.00 2.29
4623 5502 9.474920 TTTTTGGAAATACAACTGATCATGAAC 57.525 29.630 0.00 0.00 0.00 3.18
4680 5559 4.692228 TCTCATGTTAGCATTGTCGCATA 58.308 39.130 0.00 0.00 31.99 3.14
4681 5560 4.507756 TCTCATGTTAGCATTGTCGCATAC 59.492 41.667 0.00 0.00 31.99 2.39
4682 5561 4.441792 TCATGTTAGCATTGTCGCATACT 58.558 39.130 0.00 0.00 31.99 2.12
4683 5562 4.507756 TCATGTTAGCATTGTCGCATACTC 59.492 41.667 0.00 0.00 31.99 2.59
4684 5563 2.857748 TGTTAGCATTGTCGCATACTCG 59.142 45.455 0.00 0.00 0.00 4.18
4685 5564 1.487482 TAGCATTGTCGCATACTCGC 58.513 50.000 0.00 0.00 0.00 5.03
4686 5565 0.460109 AGCATTGTCGCATACTCGCA 60.460 50.000 0.00 0.00 0.00 5.10
4687 5566 0.583438 GCATTGTCGCATACTCGCAT 59.417 50.000 0.00 0.00 0.00 4.73
4688 5567 1.658373 GCATTGTCGCATACTCGCATG 60.658 52.381 0.00 0.00 0.00 4.06
4706 5585 2.109126 GGGATGCGGTGAGTTCAGC 61.109 63.158 1.33 1.33 40.68 4.26
4736 5615 7.793902 ACACATTGTTACTGATTACTTCGTTC 58.206 34.615 0.00 0.00 0.00 3.95
4821 5700 3.254654 CCGACGTTCATCGCGCAT 61.255 61.111 8.75 0.00 44.19 4.73
4905 5784 1.509463 CGGTTCCTCGTCGAATCCA 59.491 57.895 0.00 0.00 0.00 3.41
4947 5826 0.389426 CGGAACACTGTTCTACCCCG 60.389 60.000 19.14 11.97 0.00 5.73
4963 5842 2.124151 CGCCATCCAAGGGAAGGG 60.124 66.667 8.47 5.50 40.56 3.95
4965 5844 2.626467 GCCATCCAAGGGAAGGGGT 61.626 63.158 8.47 0.00 40.56 4.95
4979 5858 1.212250 AGGGGTAAAGGAATGGCGGT 61.212 55.000 0.00 0.00 0.00 5.68
4980 5859 1.035385 GGGGTAAAGGAATGGCGGTG 61.035 60.000 0.00 0.00 0.00 4.94
4981 5860 0.034863 GGGTAAAGGAATGGCGGTGA 60.035 55.000 0.00 0.00 0.00 4.02
4982 5861 1.379527 GGTAAAGGAATGGCGGTGAG 58.620 55.000 0.00 0.00 0.00 3.51
5037 5916 1.270550 GTGTTTCTTCTGTGGCCATGG 59.729 52.381 9.72 7.63 0.00 3.66
5118 5997 2.722094 TGTCTGTTGTGGAGCAAGTTT 58.278 42.857 0.00 0.00 37.83 2.66
5119 5998 2.682856 TGTCTGTTGTGGAGCAAGTTTC 59.317 45.455 0.00 0.00 37.83 2.78
5212 6125 0.249657 GATCCCACTTGCTCGGCTAG 60.250 60.000 5.97 5.97 37.42 3.42
5219 6132 1.893801 ACTTGCTCGGCTAGTAGTGTT 59.106 47.619 10.22 0.00 42.10 3.32
5387 6305 5.269505 TCTCTATTCTAGCTGTTCTTGCC 57.730 43.478 0.00 0.00 0.00 4.52
5430 6348 2.897969 GGAAGGGTGTGTCTAGAACTCA 59.102 50.000 0.00 0.00 0.00 3.41
5431 6349 3.323979 GGAAGGGTGTGTCTAGAACTCAA 59.676 47.826 0.00 0.00 33.43 3.02
5469 6387 3.264897 GCACGGCTGGATGCTACG 61.265 66.667 0.00 0.00 42.39 3.51
5471 6389 1.589993 CACGGCTGGATGCTACGAG 60.590 63.158 0.00 0.00 42.39 4.18
5479 6397 1.589196 GATGCTACGAGCGGTGACC 60.589 63.158 0.00 0.00 46.26 4.02
5490 6408 0.858583 GCGGTGACCAAAAATGTTGC 59.141 50.000 1.11 0.00 0.00 4.17
5516 6434 6.668323 ACAGTATGACAACAAATGCTACAAC 58.332 36.000 0.00 0.00 39.69 3.32
5536 6454 7.916914 ACAACCGTTCTAACTAAAATGCTAT 57.083 32.000 0.00 0.00 0.00 2.97
5593 6526 2.565841 GAGGGATGACATGCTACAACC 58.434 52.381 6.91 0.00 0.00 3.77
5628 6561 2.947754 GCAACCGGCAGAAAAATTTG 57.052 45.000 0.00 0.00 43.97 2.32
5631 6564 3.452474 CAACCGGCAGAAAAATTTGTGA 58.548 40.909 0.00 0.00 33.69 3.58
5632 6565 4.057432 CAACCGGCAGAAAAATTTGTGAT 58.943 39.130 0.00 0.00 33.69 3.06
5633 6566 3.652274 ACCGGCAGAAAAATTTGTGATG 58.348 40.909 0.00 0.00 33.69 3.07
5634 6567 3.069443 ACCGGCAGAAAAATTTGTGATGT 59.931 39.130 0.00 0.00 33.69 3.06
5635 6568 4.057432 CCGGCAGAAAAATTTGTGATGTT 58.943 39.130 7.17 0.00 33.69 2.71
5636 6569 4.084433 CCGGCAGAAAAATTTGTGATGTTG 60.084 41.667 7.17 0.00 33.69 3.33
5637 6570 4.608890 CGGCAGAAAAATTTGTGATGTTGC 60.609 41.667 7.17 0.00 33.69 4.17
5638 6571 4.272991 GGCAGAAAAATTTGTGATGTTGCA 59.727 37.500 7.17 0.00 33.69 4.08
5639 6572 5.220815 GGCAGAAAAATTTGTGATGTTGCAA 60.221 36.000 7.17 0.00 33.69 4.08
5640 6573 5.678047 GCAGAAAAATTTGTGATGTTGCAAC 59.322 36.000 22.83 22.83 33.69 4.17
5641 6574 6.193761 CAGAAAAATTTGTGATGTTGCAACC 58.806 36.000 26.14 12.64 33.69 3.77
5642 6575 4.792528 AAAATTTGTGATGTTGCAACCG 57.207 36.364 26.14 0.00 0.00 4.44
5643 6576 2.437200 ATTTGTGATGTTGCAACCGG 57.563 45.000 26.14 0.00 0.00 5.28
5644 6577 1.107114 TTTGTGATGTTGCAACCGGT 58.893 45.000 26.14 12.60 0.00 5.28
5645 6578 1.968704 TTGTGATGTTGCAACCGGTA 58.031 45.000 26.14 8.49 0.00 4.02
5646 6579 1.518325 TGTGATGTTGCAACCGGTAG 58.482 50.000 26.14 0.00 0.00 3.18
5647 6580 1.070914 TGTGATGTTGCAACCGGTAGA 59.929 47.619 26.14 7.32 0.00 2.59
5648 6581 2.147958 GTGATGTTGCAACCGGTAGAA 58.852 47.619 26.14 6.55 0.00 2.10
5649 6582 2.550606 GTGATGTTGCAACCGGTAGAAA 59.449 45.455 26.14 5.77 0.00 2.52
5650 6583 3.003897 GTGATGTTGCAACCGGTAGAAAA 59.996 43.478 26.14 5.01 0.00 2.29
5651 6584 3.632604 TGATGTTGCAACCGGTAGAAAAA 59.367 39.130 26.14 4.24 0.00 1.94
5680 6613 6.326375 TGTAAACGATGGGATAAAATGTTGC 58.674 36.000 0.00 0.00 0.00 4.17
5698 6631 1.269778 TGCAAGGTCGACTGAGACTTG 60.270 52.381 20.53 20.53 40.56 3.16
5704 6638 3.640029 AGGTCGACTGAGACTTGGTTTAA 59.360 43.478 16.46 0.00 40.76 1.52
5709 6643 6.424207 GTCGACTGAGACTTGGTTTAAATCTT 59.576 38.462 8.70 0.00 38.09 2.40
5713 6647 9.274206 GACTGAGACTTGGTTTAAATCTTAGTT 57.726 33.333 12.03 3.41 36.65 2.24
5730 6664 7.715265 TCTTAGTTGACTGAGTTTTAGCAAG 57.285 36.000 3.30 0.00 32.14 4.01
5751 6685 5.388408 AGCCCGTACTAGACAATATAAGC 57.612 43.478 0.00 0.00 0.00 3.09
5787 6721 8.729805 TTAAAAACGGTTTACTTTCCAGACTA 57.270 30.769 6.53 0.00 0.00 2.59
5802 6736 3.572255 CCAGACTACTCCATCCTAGAAGC 59.428 52.174 0.00 0.00 0.00 3.86
5840 6774 0.981183 ATCACAGGTTTGGCGGTCTA 59.019 50.000 0.00 0.00 0.00 2.59
5847 6781 2.093128 AGGTTTGGCGGTCTATAGTTGG 60.093 50.000 0.00 0.00 0.00 3.77
5849 6783 3.602483 GTTTGGCGGTCTATAGTTGGAA 58.398 45.455 0.00 0.00 0.00 3.53
5850 6784 2.973694 TGGCGGTCTATAGTTGGAAC 57.026 50.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.482721 ACGTGGTAGCATTGTAAACTGC 59.517 45.455 0.00 0.00 38.69 4.40
111 112 1.967066 CCCTGTTGCACCAATGGTTTA 59.033 47.619 0.16 0.00 31.02 2.01
112 113 0.758123 CCCTGTTGCACCAATGGTTT 59.242 50.000 0.16 0.00 31.02 3.27
128 129 2.883828 CGTTCTGCACCTCCACCCT 61.884 63.158 0.00 0.00 0.00 4.34
141 142 1.075698 TCCTCTTCTCTGACCCGTTCT 59.924 52.381 0.00 0.00 0.00 3.01
146 147 0.336737 TCCCTCCTCTTCTCTGACCC 59.663 60.000 0.00 0.00 0.00 4.46
147 148 2.239681 TTCCCTCCTCTTCTCTGACC 57.760 55.000 0.00 0.00 0.00 4.02
194 195 4.070552 GGCACGTCTTCTCCGGCT 62.071 66.667 0.00 0.00 0.00 5.52
213 214 2.753009 ATCACCAGCGAGCAGGCAAA 62.753 55.000 6.42 0.00 34.64 3.68
226 227 3.832492 TCGCGCGGATCATCACCA 61.832 61.111 31.69 2.53 0.00 4.17
286 289 4.023980 CCCTGTATAGCCATCCTCGAATA 58.976 47.826 0.00 0.00 0.00 1.75
391 395 2.480555 GCGACGCCAAGTTCATGG 59.519 61.111 9.14 0.00 43.70 3.66
421 425 0.104304 GTCGGCCTCGGACAATATGT 59.896 55.000 0.00 0.00 36.95 2.29
429 433 2.361992 TGCTTAGTCGGCCTCGGA 60.362 61.111 0.00 0.00 36.95 4.55
437 441 1.084370 CGGCCCTTTCTGCTTAGTCG 61.084 60.000 0.00 0.00 0.00 4.18
444 448 1.066152 GATTGAATCGGCCCTTTCTGC 59.934 52.381 12.23 0.88 0.00 4.26
446 450 2.025887 ACTGATTGAATCGGCCCTTTCT 60.026 45.455 13.67 0.00 39.30 2.52
451 455 2.484889 GTCTACTGATTGAATCGGCCC 58.515 52.381 13.67 0.00 39.30 5.80
492 509 8.087750 CCATGTTCATTGTTTGGTTTGTATAGT 58.912 33.333 0.00 0.00 0.00 2.12
500 517 4.756135 GCAATCCATGTTCATTGTTTGGTT 59.244 37.500 9.70 0.00 33.27 3.67
517 534 5.277297 GCAACTTTAGTTTGTTTGGCAATCC 60.277 40.000 0.00 0.00 36.89 3.01
519 536 5.181748 TGCAACTTTAGTTTGTTTGGCAAT 58.818 33.333 0.00 0.00 36.89 3.56
520 537 4.569943 TGCAACTTTAGTTTGTTTGGCAA 58.430 34.783 0.00 0.00 35.83 4.52
522 539 4.085107 CGATGCAACTTTAGTTTGTTTGGC 60.085 41.667 0.00 0.00 35.83 4.52
533 553 0.604243 ACCCGTGCGATGCAACTTTA 60.604 50.000 0.00 0.00 41.47 1.85
572 592 0.601057 AGCGTTATGGGTTTGGTTGC 59.399 50.000 0.00 0.00 0.00 4.17
574 594 1.253100 CCAGCGTTATGGGTTTGGTT 58.747 50.000 0.00 0.00 36.64 3.67
577 597 0.817013 ATGCCAGCGTTATGGGTTTG 59.183 50.000 5.75 0.00 40.97 2.93
581 601 0.877071 GATGATGCCAGCGTTATGGG 59.123 55.000 5.75 0.00 40.97 4.00
582 602 1.534163 CTGATGATGCCAGCGTTATGG 59.466 52.381 0.00 0.00 43.72 2.74
585 605 2.548707 GGATCTGATGATGCCAGCGTTA 60.549 50.000 0.00 0.00 35.37 3.18
586 606 1.590932 GATCTGATGATGCCAGCGTT 58.409 50.000 0.00 0.00 32.19 4.84
587 607 0.250209 GGATCTGATGATGCCAGCGT 60.250 55.000 0.00 0.00 35.37 5.07
589 609 0.034476 TCGGATCTGATGATGCCAGC 59.966 55.000 0.00 0.00 37.70 4.85
590 610 1.607509 GGTCGGATCTGATGATGCCAG 60.608 57.143 7.68 0.00 37.70 4.85
591 611 0.394192 GGTCGGATCTGATGATGCCA 59.606 55.000 7.68 0.00 37.70 4.92
592 612 0.683973 AGGTCGGATCTGATGATGCC 59.316 55.000 7.68 3.73 37.70 4.40
594 614 1.611006 ACGAGGTCGGATCTGATGATG 59.389 52.381 7.68 1.67 44.95 3.07
595 615 1.988293 ACGAGGTCGGATCTGATGAT 58.012 50.000 7.68 0.00 44.95 2.45
627 649 1.377202 TCAACAGATCAAGCGGGGC 60.377 57.895 0.00 0.00 0.00 5.80
760 800 1.677637 GAAGGAGGGGAGTACGGCTG 61.678 65.000 0.00 0.00 0.00 4.85
762 802 2.433146 GGAAGGAGGGGAGTACGGC 61.433 68.421 0.00 0.00 0.00 5.68
964 1034 1.540267 CAAACTGGCCCGGTTAATCA 58.460 50.000 8.72 0.00 32.14 2.57
1249 1319 2.131067 GGAGGAAGCGGAGGAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
1396 1470 3.508840 CAGGCGCGAATGGGGAAC 61.509 66.667 12.10 0.00 0.00 3.62
1415 1489 0.035439 TCATGAAAAGGCGGGAGGAC 60.035 55.000 0.00 0.00 0.00 3.85
1420 1494 0.381801 CGGAATCATGAAAAGGCGGG 59.618 55.000 0.00 0.00 0.00 6.13
1470 1544 6.262720 CAGTAAAAGCGAGGTCCTAGTACTAT 59.737 42.308 2.33 0.00 0.00 2.12
1471 1545 5.587844 CAGTAAAAGCGAGGTCCTAGTACTA 59.412 44.000 1.89 1.89 0.00 1.82
1472 1546 4.398673 CAGTAAAAGCGAGGTCCTAGTACT 59.601 45.833 0.00 0.00 0.00 2.73
1473 1547 4.439837 CCAGTAAAAGCGAGGTCCTAGTAC 60.440 50.000 0.56 0.00 0.00 2.73
1474 1548 3.698040 CCAGTAAAAGCGAGGTCCTAGTA 59.302 47.826 0.56 0.00 0.00 1.82
1475 1549 2.496470 CCAGTAAAAGCGAGGTCCTAGT 59.504 50.000 0.56 0.00 0.00 2.57
1476 1550 2.496470 ACCAGTAAAAGCGAGGTCCTAG 59.504 50.000 0.00 0.00 0.00 3.02
1477 1551 2.494870 GACCAGTAAAAGCGAGGTCCTA 59.505 50.000 0.00 0.00 42.21 2.94
1478 1552 1.275573 GACCAGTAAAAGCGAGGTCCT 59.724 52.381 0.00 0.00 42.21 3.85
1479 1553 1.001633 TGACCAGTAAAAGCGAGGTCC 59.998 52.381 7.37 0.00 46.29 4.46
1480 1554 2.067013 GTGACCAGTAAAAGCGAGGTC 58.933 52.381 0.00 0.00 46.86 3.85
1481 1555 1.270678 GGTGACCAGTAAAAGCGAGGT 60.271 52.381 0.00 0.00 34.76 3.85
1482 1556 1.439679 GGTGACCAGTAAAAGCGAGG 58.560 55.000 0.00 0.00 0.00 4.63
1483 1557 1.068474 CGGTGACCAGTAAAAGCGAG 58.932 55.000 1.11 0.00 35.68 5.03
1484 1558 0.390124 ACGGTGACCAGTAAAAGCGA 59.610 50.000 1.11 0.00 37.28 4.93
1485 1559 0.511221 CACGGTGACCAGTAAAAGCG 59.489 55.000 0.74 0.00 39.30 4.68
1486 1560 0.237498 GCACGGTGACCAGTAAAAGC 59.763 55.000 13.29 0.00 0.00 3.51
1487 1561 0.511221 CGCACGGTGACCAGTAAAAG 59.489 55.000 13.29 0.00 0.00 2.27
1569 1649 1.629353 AGAGTCGAGTGTAGTGGAGGA 59.371 52.381 0.00 0.00 0.00 3.71
1659 1739 2.174639 TCCCAGAGCTTTCTTTTGTCCA 59.825 45.455 0.00 0.00 0.00 4.02
1666 1746 1.844687 GGCAATCCCAGAGCTTTCTT 58.155 50.000 0.00 0.00 0.00 2.52
1678 1758 0.678048 GGGCAGGATATCGGCAATCC 60.678 60.000 16.77 7.76 42.85 3.01
1679 1759 0.678048 GGGGCAGGATATCGGCAATC 60.678 60.000 16.77 7.92 38.33 2.67
1680 1760 1.380302 GGGGCAGGATATCGGCAAT 59.620 57.895 16.77 0.00 38.33 3.56
1681 1761 2.836154 GGGGCAGGATATCGGCAA 59.164 61.111 16.77 0.00 38.33 4.52
1682 1762 3.625897 CGGGGCAGGATATCGGCA 61.626 66.667 16.77 0.00 38.33 5.69
1683 1763 4.394712 CCGGGGCAGGATATCGGC 62.395 72.222 8.96 8.96 34.17 5.54
1687 1767 1.006639 ACAAAAACCGGGGCAGGATAT 59.993 47.619 6.32 0.00 34.73 1.63
1688 1768 0.406361 ACAAAAACCGGGGCAGGATA 59.594 50.000 6.32 0.00 34.73 2.59
1689 1769 0.406361 TACAAAAACCGGGGCAGGAT 59.594 50.000 6.32 0.00 34.73 3.24
1690 1770 0.250989 CTACAAAAACCGGGGCAGGA 60.251 55.000 6.32 0.00 34.73 3.86
1691 1771 1.248101 CCTACAAAAACCGGGGCAGG 61.248 60.000 6.32 0.00 37.30 4.85
1692 1772 0.538746 ACCTACAAAAACCGGGGCAG 60.539 55.000 6.32 0.00 0.00 4.85
1694 1774 1.529152 CCACCTACAAAAACCGGGGC 61.529 60.000 6.32 0.00 0.00 5.80
1695 1775 1.529152 GCCACCTACAAAAACCGGGG 61.529 60.000 6.32 0.00 0.00 5.73
1696 1776 0.538746 AGCCACCTACAAAAACCGGG 60.539 55.000 6.32 0.00 0.00 5.73
1697 1777 0.879090 GAGCCACCTACAAAAACCGG 59.121 55.000 0.00 0.00 0.00 5.28
1699 1779 4.281898 TCTAGAGCCACCTACAAAAACC 57.718 45.455 0.00 0.00 0.00 3.27
1701 1783 4.595781 TCCTTCTAGAGCCACCTACAAAAA 59.404 41.667 0.00 0.00 0.00 1.94
1706 1788 4.443598 CCAATTCCTTCTAGAGCCACCTAC 60.444 50.000 0.00 0.00 0.00 3.18
1707 1789 3.711704 CCAATTCCTTCTAGAGCCACCTA 59.288 47.826 0.00 0.00 0.00 3.08
1708 1790 2.507471 CCAATTCCTTCTAGAGCCACCT 59.493 50.000 0.00 0.00 0.00 4.00
1722 1804 6.084326 ACATAATTTACCGCATCCAATTCC 57.916 37.500 0.00 0.00 0.00 3.01
1724 1806 7.430441 GGTAACATAATTTACCGCATCCAATT 58.570 34.615 0.00 0.00 41.25 2.32
1744 1826 5.641636 TCATGTGATGTGTGTGTATGGTAAC 59.358 40.000 0.00 0.00 0.00 2.50
1745 1827 5.641636 GTCATGTGATGTGTGTGTATGGTAA 59.358 40.000 0.00 0.00 0.00 2.85
1746 1828 5.175127 GTCATGTGATGTGTGTGTATGGTA 58.825 41.667 0.00 0.00 0.00 3.25
1747 1829 4.002982 GTCATGTGATGTGTGTGTATGGT 58.997 43.478 0.00 0.00 0.00 3.55
1748 1830 4.002316 TGTCATGTGATGTGTGTGTATGG 58.998 43.478 0.00 0.00 0.00 2.74
1749 1831 5.610235 TTGTCATGTGATGTGTGTGTATG 57.390 39.130 0.00 0.00 0.00 2.39
1750 1832 5.181811 CCTTTGTCATGTGATGTGTGTGTAT 59.818 40.000 0.00 0.00 0.00 2.29
1751 1833 4.514816 CCTTTGTCATGTGATGTGTGTGTA 59.485 41.667 0.00 0.00 0.00 2.90
1752 1834 3.316029 CCTTTGTCATGTGATGTGTGTGT 59.684 43.478 0.00 0.00 0.00 3.72
1753 1835 3.565063 TCCTTTGTCATGTGATGTGTGTG 59.435 43.478 0.00 0.00 0.00 3.82
1754 1836 3.817084 CTCCTTTGTCATGTGATGTGTGT 59.183 43.478 0.00 0.00 0.00 3.72
1755 1837 3.365666 GCTCCTTTGTCATGTGATGTGTG 60.366 47.826 0.00 0.00 0.00 3.82
1756 1838 2.816087 GCTCCTTTGTCATGTGATGTGT 59.184 45.455 0.00 0.00 0.00 3.72
1757 1839 2.815503 TGCTCCTTTGTCATGTGATGTG 59.184 45.455 0.00 0.00 0.00 3.21
1758 1840 2.816087 GTGCTCCTTTGTCATGTGATGT 59.184 45.455 0.00 0.00 0.00 3.06
1759 1841 2.815503 TGTGCTCCTTTGTCATGTGATG 59.184 45.455 0.00 0.00 0.00 3.07
1760 1842 3.144657 TGTGCTCCTTTGTCATGTGAT 57.855 42.857 0.00 0.00 0.00 3.06
1761 1843 2.636647 TGTGCTCCTTTGTCATGTGA 57.363 45.000 0.00 0.00 0.00 3.58
1762 1844 3.928727 AATGTGCTCCTTTGTCATGTG 57.071 42.857 0.00 0.00 0.00 3.21
1763 1845 4.341806 TCAAAATGTGCTCCTTTGTCATGT 59.658 37.500 0.00 0.00 32.92 3.21
1764 1846 4.873817 TCAAAATGTGCTCCTTTGTCATG 58.126 39.130 9.11 0.00 32.92 3.07
1765 1847 5.479375 AGATCAAAATGTGCTCCTTTGTCAT 59.521 36.000 0.00 0.00 32.92 3.06
1766 1848 4.828939 AGATCAAAATGTGCTCCTTTGTCA 59.171 37.500 0.00 0.00 32.92 3.58
1767 1849 5.159209 CAGATCAAAATGTGCTCCTTTGTC 58.841 41.667 0.00 7.21 32.92 3.18
1768 1850 4.560108 GCAGATCAAAATGTGCTCCTTTGT 60.560 41.667 0.00 0.78 46.03 2.83
1795 1877 3.245016 ACATCAGCAAGATCTGGTTTGGA 60.245 43.478 0.00 0.00 33.72 3.53
1830 1912 3.114809 CTGACGAAGATGAGCTGTGATC 58.885 50.000 0.00 0.00 0.00 2.92
1852 1934 4.082190 GGGATACGCTGCTATGAACTATCA 60.082 45.833 0.00 0.00 37.47 2.15
1853 1935 4.082190 TGGGATACGCTGCTATGAACTATC 60.082 45.833 0.00 0.00 37.60 2.08
1854 1936 3.832490 TGGGATACGCTGCTATGAACTAT 59.168 43.478 0.00 0.00 37.60 2.12
1863 1950 4.891992 ATAGTAAATGGGATACGCTGCT 57.108 40.909 0.00 0.00 37.60 4.24
1876 1963 9.745880 CGTAACATCAGTTCCACTATAGTAAAT 57.254 33.333 4.74 0.00 39.15 1.40
1877 1964 8.742777 ACGTAACATCAGTTCCACTATAGTAAA 58.257 33.333 4.74 0.43 39.15 2.01
1878 1965 8.284945 ACGTAACATCAGTTCCACTATAGTAA 57.715 34.615 4.74 0.00 39.15 2.24
1879 1966 7.870509 ACGTAACATCAGTTCCACTATAGTA 57.129 36.000 4.74 0.00 39.15 1.82
1880 1967 6.770746 ACGTAACATCAGTTCCACTATAGT 57.229 37.500 0.00 0.00 39.15 2.12
1881 1968 6.414109 CGAACGTAACATCAGTTCCACTATAG 59.586 42.308 0.00 0.00 40.62 1.31
2023 2113 4.228824 AGACTTGTGGGGTTGAACTAGTA 58.771 43.478 0.00 0.00 33.47 1.82
2027 2117 2.127708 AGAGACTTGTGGGGTTGAACT 58.872 47.619 0.00 0.00 0.00 3.01
2028 2118 2.222027 CAGAGACTTGTGGGGTTGAAC 58.778 52.381 0.00 0.00 0.00 3.18
2110 2203 5.237815 ACGAATGATTAACTGCTGAGACAA 58.762 37.500 0.00 0.00 0.00 3.18
2118 2211 7.379529 CCCAAATAATGACGAATGATTAACTGC 59.620 37.037 0.00 0.00 0.00 4.40
2166 2259 5.888724 TCAACTTTCCTGAACAAACACCATA 59.111 36.000 0.00 0.00 0.00 2.74
2187 2280 5.116180 CCTGCGTAATCAATCCTAACTCAA 58.884 41.667 0.00 0.00 0.00 3.02
2192 2285 3.452990 TCCACCTGCGTAATCAATCCTAA 59.547 43.478 0.00 0.00 0.00 2.69
2227 2327 7.968405 ACACAAAAGGATAGAAATGAATTACGC 59.032 33.333 0.00 0.00 0.00 4.42
2248 2348 5.250200 ACTTAACCACAAGACAGAACACAA 58.750 37.500 0.00 0.00 0.00 3.33
2296 2396 6.215845 ACAAAATGGACAAGAATGTTGCTAC 58.784 36.000 0.00 0.00 40.74 3.58
2302 2402 6.267471 ACACCATACAAAATGGACAAGAATGT 59.733 34.615 10.90 0.50 44.25 2.71
2470 2574 3.700538 TGGAGAACCAATATTGCAAGCT 58.299 40.909 10.11 4.28 43.91 3.74
2498 2602 1.754621 TAGGCTGTGGCTCTCGAGG 60.755 63.158 13.56 4.50 39.70 4.63
2503 2607 3.077556 CCGGTAGGCTGTGGCTCT 61.078 66.667 0.00 0.00 39.70 4.09
2504 2608 3.372554 GACCGGTAGGCTGTGGCTC 62.373 68.421 7.34 0.00 42.76 4.70
2516 2620 1.626356 CCACATCATCTGGGACCGGT 61.626 60.000 6.92 6.92 0.00 5.28
2518 2622 0.179073 GACCACATCATCTGGGACCG 60.179 60.000 0.00 0.00 32.45 4.79
2568 2672 3.301274 GTCCATCTTAGTAGCAGGAGGT 58.699 50.000 0.00 0.00 0.00 3.85
2576 2680 2.432146 TGCTGCTGGTCCATCTTAGTAG 59.568 50.000 0.00 0.00 0.00 2.57
2643 2747 3.833650 TCCCGTGTCTAATTAACTGACCA 59.166 43.478 2.02 0.00 0.00 4.02
2645 2749 4.159135 TCCTCCCGTGTCTAATTAACTGAC 59.841 45.833 0.00 0.00 0.00 3.51
2661 2767 1.616865 TGTACTTCAACACTCCTCCCG 59.383 52.381 0.00 0.00 0.00 5.14
2670 2782 8.911918 ACACCATTTATACTTGTACTTCAACA 57.088 30.769 0.00 0.00 32.18 3.33
2698 2811 8.491950 GCTTCTAAAGTTCAAGTTCTTAGACAG 58.508 37.037 0.00 0.00 0.00 3.51
2714 2827 4.637977 GCCTAGCATCAAAGCTTCTAAAGT 59.362 41.667 0.00 0.00 43.70 2.66
2723 2836 2.086869 TGTGAAGCCTAGCATCAAAGC 58.913 47.619 0.00 0.00 37.99 3.51
2736 2852 2.223272 GCCGCCTAAGTTTATGTGAAGC 60.223 50.000 0.00 0.00 0.00 3.86
2744 2860 2.176889 AGAGACAGCCGCCTAAGTTTA 58.823 47.619 0.00 0.00 0.00 2.01
2748 2864 0.247736 ACAAGAGACAGCCGCCTAAG 59.752 55.000 0.00 0.00 0.00 2.18
2749 2865 0.685097 AACAAGAGACAGCCGCCTAA 59.315 50.000 0.00 0.00 0.00 2.69
2752 2869 1.576421 CAAACAAGAGACAGCCGCC 59.424 57.895 0.00 0.00 0.00 6.13
2754 2871 1.205064 CGCAAACAAGAGACAGCCG 59.795 57.895 0.00 0.00 0.00 5.52
2757 2874 1.439365 GCGCGCAAACAAGAGACAG 60.439 57.895 29.10 0.00 0.00 3.51
2782 2899 1.150567 GCGAGCAGCTCATGGTAGTG 61.151 60.000 22.49 4.36 40.53 2.74
2783 2900 1.142748 GCGAGCAGCTCATGGTAGT 59.857 57.895 22.49 0.00 40.53 2.73
2820 2937 0.974010 AATCATGCAGCAGGGGGTTG 60.974 55.000 7.31 0.00 0.00 3.77
2821 2938 0.630673 TAATCATGCAGCAGGGGGTT 59.369 50.000 7.31 1.30 0.00 4.11
2822 2939 0.106519 GTAATCATGCAGCAGGGGGT 60.107 55.000 7.31 0.00 0.00 4.95
2824 2941 0.464373 ACGTAATCATGCAGCAGGGG 60.464 55.000 7.31 0.00 0.00 4.79
2826 2943 0.028505 GCACGTAATCATGCAGCAGG 59.971 55.000 0.00 0.00 41.65 4.85
2827 2944 1.012086 AGCACGTAATCATGCAGCAG 58.988 50.000 0.00 0.00 44.59 4.24
2830 2947 4.093514 CAGAAAAGCACGTAATCATGCAG 58.906 43.478 0.00 0.00 44.59 4.41
2838 2955 1.790623 GAGCGACAGAAAAGCACGTAA 59.209 47.619 0.00 0.00 0.00 3.18
2868 2990 0.108585 AAGGGTATGCTGGGTATGCG 59.891 55.000 0.00 0.00 0.00 4.73
2906 3030 2.341257 CCTCAATCTGTCGGTGAACAG 58.659 52.381 0.00 0.00 46.54 3.16
2912 3036 0.252284 ACCTCCCTCAATCTGTCGGT 60.252 55.000 0.00 0.00 0.00 4.69
2914 3038 0.898320 ACACCTCCCTCAATCTGTCG 59.102 55.000 0.00 0.00 0.00 4.35
2917 3041 2.704572 GTCAACACCTCCCTCAATCTG 58.295 52.381 0.00 0.00 0.00 2.90
2925 3049 1.671379 GAAGCCGTCAACACCTCCC 60.671 63.158 0.00 0.00 0.00 4.30
2931 3055 1.684450 TGAGTACTGAAGCCGTCAACA 59.316 47.619 0.00 0.00 35.22 3.33
2935 3059 0.889306 ACCTGAGTACTGAAGCCGTC 59.111 55.000 0.00 0.00 0.00 4.79
2936 3060 0.603569 CACCTGAGTACTGAAGCCGT 59.396 55.000 0.00 0.00 0.00 5.68
2937 3061 0.108615 CCACCTGAGTACTGAAGCCG 60.109 60.000 0.00 0.00 0.00 5.52
2944 3068 1.887198 CAACTCGTCCACCTGAGTACT 59.113 52.381 0.00 0.00 44.36 2.73
2948 3072 1.867233 CAAACAACTCGTCCACCTGAG 59.133 52.381 0.00 0.00 38.21 3.35
2952 3076 1.278637 CGCAAACAACTCGTCCACC 59.721 57.895 0.00 0.00 0.00 4.61
2954 3078 1.202440 AGTACGCAAACAACTCGTCCA 60.202 47.619 0.00 0.00 37.61 4.02
2958 3082 7.215568 CCATTAAATAAGTACGCAAACAACTCG 59.784 37.037 0.00 0.00 0.00 4.18
2963 3087 7.078851 CACACCATTAAATAAGTACGCAAACA 58.921 34.615 0.00 0.00 0.00 2.83
2969 3093 8.360325 TGATAGCACACCATTAAATAAGTACG 57.640 34.615 0.00 0.00 0.00 3.67
2970 3094 9.326413 ACTGATAGCACACCATTAAATAAGTAC 57.674 33.333 0.00 0.00 0.00 2.73
2971 3095 9.899661 AACTGATAGCACACCATTAAATAAGTA 57.100 29.630 0.00 0.00 0.00 2.24
2972 3096 8.807948 AACTGATAGCACACCATTAAATAAGT 57.192 30.769 0.00 0.00 0.00 2.24
2974 3098 9.899661 ACTAACTGATAGCACACCATTAAATAA 57.100 29.630 0.00 0.00 34.78 1.40
2975 3099 9.325198 CACTAACTGATAGCACACCATTAAATA 57.675 33.333 0.00 0.00 34.78 1.40
2976 3100 7.829211 ACACTAACTGATAGCACACCATTAAAT 59.171 33.333 0.00 0.00 34.78 1.40
2977 3101 7.165485 ACACTAACTGATAGCACACCATTAAA 58.835 34.615 0.00 0.00 34.78 1.52
2978 3102 6.707290 ACACTAACTGATAGCACACCATTAA 58.293 36.000 0.00 0.00 34.78 1.40
2980 3104 5.165961 ACACTAACTGATAGCACACCATT 57.834 39.130 0.00 0.00 34.78 3.16
2981 3105 4.826274 ACACTAACTGATAGCACACCAT 57.174 40.909 0.00 0.00 34.78 3.55
2983 3107 4.315803 ACAACACTAACTGATAGCACACC 58.684 43.478 0.00 0.00 34.78 4.16
2984 3108 5.924475 AACAACACTAACTGATAGCACAC 57.076 39.130 0.00 0.00 34.78 3.82
2985 3109 6.014925 TCCTAACAACACTAACTGATAGCACA 60.015 38.462 0.00 0.00 34.78 4.57
2986 3110 6.395629 TCCTAACAACACTAACTGATAGCAC 58.604 40.000 0.00 0.00 34.78 4.40
2987 3111 6.599356 TCCTAACAACACTAACTGATAGCA 57.401 37.500 0.00 0.00 34.78 3.49
3006 3139 1.149288 ACTCCACACCACTCCTTCCTA 59.851 52.381 0.00 0.00 0.00 2.94
3008 3141 0.035458 CACTCCACACCACTCCTTCC 59.965 60.000 0.00 0.00 0.00 3.46
3009 3142 0.759346 ACACTCCACACCACTCCTTC 59.241 55.000 0.00 0.00 0.00 3.46
3010 3143 0.469917 CACACTCCACACCACTCCTT 59.530 55.000 0.00 0.00 0.00 3.36
3012 3145 1.071471 CCACACTCCACACCACTCC 59.929 63.158 0.00 0.00 0.00 3.85
3014 3147 0.691078 AGTCCACACTCCACACCACT 60.691 55.000 0.00 0.00 0.00 4.00
3015 3148 0.532862 CAGTCCACACTCCACACCAC 60.533 60.000 0.00 0.00 0.00 4.16
3016 3149 0.689412 TCAGTCCACACTCCACACCA 60.689 55.000 0.00 0.00 0.00 4.17
3017 3150 0.468226 TTCAGTCCACACTCCACACC 59.532 55.000 0.00 0.00 0.00 4.16
3019 3152 2.437651 TGATTTCAGTCCACACTCCACA 59.562 45.455 0.00 0.00 0.00 4.17
3020 3153 3.126001 TGATTTCAGTCCACACTCCAC 57.874 47.619 0.00 0.00 0.00 4.02
3021 3154 4.371624 AATGATTTCAGTCCACACTCCA 57.628 40.909 0.00 0.00 0.00 3.86
3022 3155 4.761739 TCAAATGATTTCAGTCCACACTCC 59.238 41.667 0.00 0.00 0.00 3.85
3023 3156 5.702670 TCTCAAATGATTTCAGTCCACACTC 59.297 40.000 0.00 0.00 0.00 3.51
3024 3157 5.624159 TCTCAAATGATTTCAGTCCACACT 58.376 37.500 0.00 0.00 0.00 3.55
3060 3193 5.527582 GTCTATAGTACAGTTGGGCCAAATG 59.472 44.000 37.03 37.03 43.69 2.32
3077 3214 2.892305 GCAGGCACAGCGTCTATAG 58.108 57.895 0.00 0.00 0.00 1.31
3135 3346 8.458573 TTTGACTACCAAAAACAGATGTACAT 57.541 30.769 8.43 8.43 41.43 2.29
3149 3407 1.145945 TGGCCACCATTTGACTACCAA 59.854 47.619 0.00 0.00 0.00 3.67
3156 3423 2.079170 TGTTCTTGGCCACCATTTGA 57.921 45.000 3.88 0.00 31.53 2.69
3198 3465 2.351738 GGGACGAATTGCCAACTTTGAG 60.352 50.000 0.00 0.00 35.18 3.02
3212 3479 3.013921 GCCATTCACTTTATGGGACGAA 58.986 45.455 0.00 0.00 42.32 3.85
3213 3480 2.238646 AGCCATTCACTTTATGGGACGA 59.761 45.455 0.00 0.00 42.32 4.20
3225 3492 4.047822 CAAGATCTAGTCGAGCCATTCAC 58.952 47.826 0.00 0.00 0.00 3.18
3228 3495 3.957497 AGACAAGATCTAGTCGAGCCATT 59.043 43.478 0.00 0.00 39.67 3.16
3241 3508 6.398234 TGAATACTCCTAGCAGACAAGATC 57.602 41.667 0.00 0.00 0.00 2.75
3268 3535 3.054875 TCCTAGCATGCATGAAGTGTTCT 60.055 43.478 30.64 17.02 0.00 3.01
3273 3540 3.211865 CACATCCTAGCATGCATGAAGT 58.788 45.455 30.64 15.44 0.00 3.01
3284 3551 7.333423 TCAAACTTGTAACATACACATCCTAGC 59.667 37.037 0.00 0.00 38.63 3.42
3302 3569 6.514947 TCCTCCAATCAACATTTCAAACTTG 58.485 36.000 0.00 0.00 0.00 3.16
3331 3598 6.636454 AATCTCTTCCAACATAGTTACCCA 57.364 37.500 0.00 0.00 0.00 4.51
3355 3622 8.184192 CGCTCAATCAACCTTGTTATCTTTTAT 58.816 33.333 0.00 0.00 0.00 1.40
3363 3630 1.810151 GGCGCTCAATCAACCTTGTTA 59.190 47.619 7.64 0.00 0.00 2.41
3367 3634 1.244019 GGTGGCGCTCAATCAACCTT 61.244 55.000 7.64 0.00 0.00 3.50
3444 3718 7.276438 ACCGTTTCGTTTTTCTATATCACTACC 59.724 37.037 0.00 0.00 0.00 3.18
3447 3721 8.937634 ATACCGTTTCGTTTTTCTATATCACT 57.062 30.769 0.00 0.00 0.00 3.41
3469 3743 3.893813 AGGGTCGGTAACAGGTGATATAC 59.106 47.826 0.00 0.00 0.00 1.47
3483 3757 3.849951 CGCCTATGCAGGGTCGGT 61.850 66.667 9.75 0.00 42.88 4.69
3493 3767 1.662517 TGCCATGTTACACGCCTATG 58.337 50.000 4.17 0.00 0.00 2.23
3498 3772 4.495184 GGTTATACTTGCCATGTTACACGC 60.495 45.833 0.00 0.00 0.00 5.34
3507 3781 4.040936 TGTTGTGGGTTATACTTGCCAT 57.959 40.909 0.00 0.00 0.00 4.40
3510 3784 5.897377 ATCTTGTTGTGGGTTATACTTGC 57.103 39.130 0.00 0.00 0.00 4.01
3520 3794 5.111293 GCCAATATTGAATCTTGTTGTGGG 58.889 41.667 17.23 0.00 0.00 4.61
3525 3799 9.995003 TTAAAACTGCCAATATTGAATCTTGTT 57.005 25.926 17.23 9.41 0.00 2.83
3550 3831 7.678837 TGAAAAAGGCCTTCATATGACATTTT 58.321 30.769 20.79 11.27 0.00 1.82
3553 3834 8.716674 ATATGAAAAAGGCCTTCATATGACAT 57.283 30.769 27.00 21.28 46.99 3.06
3583 3864 7.744087 AGCTGTTCTTGACAAACACATTATA 57.256 32.000 0.00 0.00 37.93 0.98
3607 3888 8.644374 ACAAAGCTCAATTACCATAAACCTAA 57.356 30.769 0.00 0.00 0.00 2.69
3609 3890 7.309805 GGAACAAAGCTCAATTACCATAAACCT 60.310 37.037 0.00 0.00 0.00 3.50
3644 3926 1.003580 GCTGGATGACAACCTTCCTCA 59.996 52.381 3.14 0.00 39.25 3.86
3699 3984 5.482908 GTCCAGATTCAGTAACAGTCATGT 58.517 41.667 0.00 0.00 43.15 3.21
3705 3991 5.089970 TGATGGTCCAGATTCAGTAACAG 57.910 43.478 0.00 0.00 0.00 3.16
3728 4014 0.846427 ACCTGGATGGAAGCTGGGAA 60.846 55.000 0.00 0.00 39.71 3.97
3745 4031 5.532779 GGGTGATCAGGAATTTATCTGAACC 59.467 44.000 0.00 13.87 42.40 3.62
3759 4045 1.492176 ACTATGCAAGGGGTGATCAGG 59.508 52.381 0.00 0.00 0.00 3.86
3767 4053 2.489073 GGAACCCATACTATGCAAGGGG 60.489 54.545 4.29 4.29 43.96 4.79
3769 4055 3.117888 ACTGGAACCCATACTATGCAAGG 60.118 47.826 0.00 0.00 30.82 3.61
3775 4061 4.079958 GGTGGAAACTGGAACCCATACTAT 60.080 45.833 0.00 0.00 30.82 2.12
3785 4071 1.133606 GGAACTGGGTGGAAACTGGAA 60.134 52.381 0.00 0.00 0.00 3.53
3791 4077 4.540099 AGATAATCTGGAACTGGGTGGAAA 59.460 41.667 0.00 0.00 0.00 3.13
3801 4087 6.054295 AGCTGATCACAAGATAATCTGGAAC 58.946 40.000 0.00 0.00 33.72 3.62
3850 4136 6.273825 CACTAGGTACATGACATCCACTTAC 58.726 44.000 0.00 0.00 0.00 2.34
3852 4138 4.383118 GCACTAGGTACATGACATCCACTT 60.383 45.833 0.00 0.00 0.00 3.16
3864 4150 3.580895 TCCTTTGTCATGCACTAGGTACA 59.419 43.478 0.00 0.00 33.29 2.90
3871 4157 4.082571 GCAAGTATTCCTTTGTCATGCACT 60.083 41.667 0.00 0.00 0.00 4.40
3872 4158 4.082571 AGCAAGTATTCCTTTGTCATGCAC 60.083 41.667 0.00 0.00 0.00 4.57
3874 4160 4.397417 AGAGCAAGTATTCCTTTGTCATGC 59.603 41.667 0.00 0.00 0.00 4.06
3885 4171 3.386402 AGCAGGTCCTAGAGCAAGTATTC 59.614 47.826 2.76 0.00 31.89 1.75
3886 4172 3.379452 AGCAGGTCCTAGAGCAAGTATT 58.621 45.455 2.76 0.00 31.89 1.89
3892 4178 1.267574 CCCAAGCAGGTCCTAGAGCA 61.268 60.000 2.76 0.00 34.66 4.26
3896 4182 1.139853 GTCATCCCAAGCAGGTCCTAG 59.860 57.143 0.00 0.00 34.66 3.02
3919 4205 1.118838 CCTTTGCCACTTGGTTCCAA 58.881 50.000 4.17 4.17 37.57 3.53
3976 4262 2.715763 TCTACAGTCTTGTTCCCCCT 57.284 50.000 0.00 0.00 38.76 4.79
3982 4268 3.709653 TGACCCACTTCTACAGTCTTGTT 59.290 43.478 0.00 0.00 38.76 2.83
3984 4270 4.248859 CATGACCCACTTCTACAGTCTTG 58.751 47.826 0.00 0.00 30.92 3.02
4055 4341 4.788925 ACTTGTATTAGGGGCAAGCATA 57.211 40.909 0.00 0.00 42.20 3.14
4128 4461 0.984230 CTTGGAGGAGCACCCAACTA 59.016 55.000 0.00 0.00 37.50 2.24
4154 4501 4.871933 ATGAGTGAAATTTGGAACCCAC 57.128 40.909 0.00 0.00 30.78 4.61
4268 4619 9.569122 AGCCTAATCACTGAAGTAAAAAGTTAA 57.431 29.630 0.00 0.00 0.00 2.01
4307 4658 4.033702 CACATATGCACAGTACAAGAGCAG 59.966 45.833 13.74 5.67 36.10 4.24
4329 4680 4.453480 AAACCCAAGTCCAGAGAATTCA 57.547 40.909 8.44 0.00 0.00 2.57
4479 5148 8.677148 ATAAATCACCTGTTGTATGGTATGTC 57.323 34.615 0.00 0.00 34.79 3.06
4480 5149 8.271458 TGATAAATCACCTGTTGTATGGTATGT 58.729 33.333 0.00 0.00 34.79 2.29
4481 5150 8.675705 TGATAAATCACCTGTTGTATGGTATG 57.324 34.615 0.00 0.00 34.79 2.39
4517 5189 7.976734 CGAATAAGCCCAACCAATGTAAAATTA 59.023 33.333 0.00 0.00 0.00 1.40
4527 5199 0.606944 ACGCGAATAAGCCCAACCAA 60.607 50.000 15.93 0.00 0.00 3.67
4623 5502 6.426328 GCAGTCAGAAATAGGGATGTCATAAG 59.574 42.308 0.00 0.00 0.00 1.73
4685 5564 0.392863 TGAACTCACCGCATCCCATG 60.393 55.000 0.00 0.00 0.00 3.66
4686 5565 0.107508 CTGAACTCACCGCATCCCAT 60.108 55.000 0.00 0.00 0.00 4.00
4687 5566 1.296392 CTGAACTCACCGCATCCCA 59.704 57.895 0.00 0.00 0.00 4.37
4688 5567 2.109126 GCTGAACTCACCGCATCCC 61.109 63.158 0.00 0.00 0.00 3.85
4706 5585 9.973246 GAAGTAATCAGTAACAATGTGTATGTG 57.027 33.333 0.00 0.00 0.00 3.21
4736 5615 2.739292 GCATCTGCAAAGCCACATATG 58.261 47.619 0.00 0.00 41.59 1.78
4905 5784 1.377725 GGCGGCCATATGCTAGCAT 60.378 57.895 31.60 31.60 42.48 3.79
4936 5815 1.202099 TTGGATGGCGGGGTAGAACA 61.202 55.000 0.00 0.00 0.00 3.18
4938 5817 1.632018 CCTTGGATGGCGGGGTAGAA 61.632 60.000 0.00 0.00 0.00 2.10
4947 5826 1.286305 TACCCCTTCCCTTGGATGGC 61.286 60.000 9.07 0.00 43.26 4.40
4963 5842 1.379527 CTCACCGCCATTCCTTTACC 58.620 55.000 0.00 0.00 0.00 2.85
4965 5844 3.168773 GCTCACCGCCATTCCTTTA 57.831 52.632 0.00 0.00 0.00 1.85
4979 5858 2.678580 TGGATCGTCACCGGCTCA 60.679 61.111 0.00 0.00 33.95 4.26
4980 5859 2.202756 GTGGATCGTCACCGGCTC 60.203 66.667 0.00 0.00 33.95 4.70
4981 5860 2.994995 TGTGGATCGTCACCGGCT 60.995 61.111 0.00 0.00 36.87 5.52
4982 5861 2.509336 CTGTGGATCGTCACCGGC 60.509 66.667 0.00 0.00 36.87 6.13
4983 5862 2.184322 CCTGTGGATCGTCACCGG 59.816 66.667 0.00 0.00 36.10 5.28
4984 5863 2.184322 CCCTGTGGATCGTCACCG 59.816 66.667 0.38 0.00 36.87 4.94
4985 5864 1.517832 CTCCCTGTGGATCGTCACC 59.482 63.158 0.38 0.00 40.80 4.02
4986 5865 1.517832 CCTCCCTGTGGATCGTCAC 59.482 63.158 0.00 0.00 40.80 3.67
4987 5866 1.685765 CCCTCCCTGTGGATCGTCA 60.686 63.158 0.00 0.00 40.80 4.35
5212 6125 6.656003 ACAACGAAAGCATCTAAAACACTAC 58.344 36.000 0.00 0.00 0.00 2.73
5219 6132 4.319190 CCAACGACAACGAAAGCATCTAAA 60.319 41.667 0.00 0.00 42.66 1.85
5368 6286 4.125703 CCTGGCAAGAACAGCTAGAATAG 58.874 47.826 0.00 0.00 42.44 1.73
5387 6305 0.250640 GTATCCTCCATGCCTGCCTG 60.251 60.000 0.00 0.00 0.00 4.85
5410 6328 4.602340 TTGAGTTCTAGACACACCCTTC 57.398 45.455 0.00 0.00 0.00 3.46
5430 6348 3.000925 CCGCTCGTAGCAAAATAACGATT 59.999 43.478 7.47 0.00 43.88 3.34
5431 6349 2.538449 CCGCTCGTAGCAAAATAACGAT 59.462 45.455 7.47 0.00 43.88 3.73
5469 6387 2.393764 CAACATTTTTGGTCACCGCTC 58.606 47.619 0.00 0.00 0.00 5.03
5471 6389 0.858583 GCAACATTTTTGGTCACCGC 59.141 50.000 0.00 0.00 0.00 5.68
5479 6397 5.211454 TGTCATACTGTCGCAACATTTTTG 58.789 37.500 0.00 0.00 34.13 2.44
5490 6408 4.668576 AGCATTTGTTGTCATACTGTCG 57.331 40.909 0.00 0.00 0.00 4.35
5516 6434 8.975439 ACGATTATAGCATTTTAGTTAGAACGG 58.025 33.333 0.00 0.00 0.00 4.44
5536 6454 5.163550 ACGTGATCTCCTTCATTGACGATTA 60.164 40.000 0.00 0.00 0.00 1.75
5539 6457 2.492088 ACGTGATCTCCTTCATTGACGA 59.508 45.455 0.00 0.00 0.00 4.20
5540 6458 2.600420 CACGTGATCTCCTTCATTGACG 59.400 50.000 10.90 0.00 0.00 4.35
5545 6463 2.760650 TGTAGCACGTGATCTCCTTCAT 59.239 45.455 22.23 0.00 0.00 2.57
5593 6526 0.592637 TTGCAACATCCGTCTTGCTG 59.407 50.000 0.00 0.00 42.77 4.41
5617 6550 6.193761 GGTTGCAACATCACAAATTTTTCTG 58.806 36.000 29.55 0.00 0.00 3.02
5623 6556 2.102252 ACCGGTTGCAACATCACAAATT 59.898 40.909 29.55 1.65 0.00 1.82
5625 6558 1.107114 ACCGGTTGCAACATCACAAA 58.893 45.000 29.55 0.00 0.00 2.83
5627 6560 1.070914 TCTACCGGTTGCAACATCACA 59.929 47.619 29.55 10.36 0.00 3.58
5628 6561 1.803334 TCTACCGGTTGCAACATCAC 58.197 50.000 29.55 12.23 0.00 3.06
5648 6581 9.765795 TTTTATCCCATCGTTTACAACATTTTT 57.234 25.926 0.00 0.00 0.00 1.94
5649 6582 9.936759 ATTTTATCCCATCGTTTACAACATTTT 57.063 25.926 0.00 0.00 0.00 1.82
5650 6583 9.364989 CATTTTATCCCATCGTTTACAACATTT 57.635 29.630 0.00 0.00 0.00 2.32
5651 6584 8.527810 ACATTTTATCCCATCGTTTACAACATT 58.472 29.630 0.00 0.00 0.00 2.71
5652 6585 8.062065 ACATTTTATCCCATCGTTTACAACAT 57.938 30.769 0.00 0.00 0.00 2.71
5653 6586 7.455641 ACATTTTATCCCATCGTTTACAACA 57.544 32.000 0.00 0.00 0.00 3.33
5654 6587 7.201401 GCAACATTTTATCCCATCGTTTACAAC 60.201 37.037 0.00 0.00 0.00 3.32
5655 6588 6.809196 GCAACATTTTATCCCATCGTTTACAA 59.191 34.615 0.00 0.00 0.00 2.41
5656 6589 6.071896 TGCAACATTTTATCCCATCGTTTACA 60.072 34.615 0.00 0.00 0.00 2.41
5657 6590 6.326375 TGCAACATTTTATCCCATCGTTTAC 58.674 36.000 0.00 0.00 0.00 2.01
5658 6591 6.516739 TGCAACATTTTATCCCATCGTTTA 57.483 33.333 0.00 0.00 0.00 2.01
5662 6595 4.142182 ACCTTGCAACATTTTATCCCATCG 60.142 41.667 0.00 0.00 0.00 3.84
5680 6613 1.341531 ACCAAGTCTCAGTCGACCTTG 59.658 52.381 18.86 18.86 34.46 3.61
5704 6638 8.677148 TTGCTAAAACTCAGTCAACTAAGATT 57.323 30.769 0.00 0.00 0.00 2.40
5709 6643 4.755123 GGCTTGCTAAAACTCAGTCAACTA 59.245 41.667 0.00 0.00 0.00 2.24
5713 6647 2.504367 GGGCTTGCTAAAACTCAGTCA 58.496 47.619 0.00 0.00 0.00 3.41
5730 6664 4.164294 CGCTTATATTGTCTAGTACGGGC 58.836 47.826 0.00 0.00 0.00 6.13
5751 6685 8.270111 AGTAAACCGTTTTTAAAATTTCATGCG 58.730 29.630 0.96 0.00 0.00 4.73
5780 6714 3.572255 GCTTCTAGGATGGAGTAGTCTGG 59.428 52.174 0.00 0.00 0.00 3.86
5787 6721 1.694048 CCTGGGCTTCTAGGATGGAGT 60.694 57.143 0.00 0.00 36.11 3.85
5802 6736 3.117550 TGATGGATGATTACCAACCTGGG 60.118 47.826 0.00 0.00 43.37 4.45
5840 6774 5.818678 TTATATCCCTGCGTTCCAACTAT 57.181 39.130 0.00 0.00 0.00 2.12
5847 6781 4.065088 TGCTTCATTATATCCCTGCGTTC 58.935 43.478 0.00 0.00 0.00 3.95
5849 6783 3.769739 TGCTTCATTATATCCCTGCGT 57.230 42.857 0.00 0.00 0.00 5.24
5850 6784 3.438087 CCTTGCTTCATTATATCCCTGCG 59.562 47.826 0.00 0.00 0.00 5.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.