Multiple sequence alignment - TraesCS3D01G098600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G098600 chr3D 100.000 3481 0 0 1 3481 50380296 50383776 0.000000e+00 6429
1 TraesCS3D01G098600 chr3D 90.786 1769 117 24 882 2621 50075552 50077303 0.000000e+00 2322
2 TraesCS3D01G098600 chr3D 84.682 692 61 24 2716 3404 50078447 50079096 0.000000e+00 649
3 TraesCS3D01G098600 chr3D 91.613 155 13 0 717 871 50074649 50074803 7.570000e-52 215
4 TraesCS3D01G098600 chr3D 94.286 140 8 0 855 994 50074820 50074959 7.570000e-52 215
5 TraesCS3D01G098600 chr3D 82.069 145 19 7 316 458 112730110 112730249 2.200000e-22 117
6 TraesCS3D01G098600 chr3D 86.316 95 8 1 1 95 50390776 50390865 7.950000e-17 99
7 TraesCS3D01G098600 chr3B 95.267 1986 64 13 754 2721 79781444 79783417 0.000000e+00 3120
8 TraesCS3D01G098600 chr3B 91.225 1755 122 21 883 2624 79560116 79561851 0.000000e+00 2359
9 TraesCS3D01G098600 chr3B 82.665 698 68 26 2715 3404 79561882 79562534 1.400000e-158 569
10 TraesCS3D01G098600 chr3B 94.286 140 8 0 855 994 79559859 79559998 7.570000e-52 215
11 TraesCS3D01G098600 chr3B 82.129 263 35 11 3078 3335 79785576 79785831 7.570000e-52 215
12 TraesCS3D01G098600 chr3B 91.026 156 13 1 717 871 79559686 79559841 3.520000e-50 209
13 TraesCS3D01G098600 chr3A 91.222 1367 100 13 1120 2481 63389195 63390546 0.000000e+00 1842
14 TraesCS3D01G098600 chr3A 89.641 1448 107 21 1044 2481 63434161 63435575 0.000000e+00 1803
15 TraesCS3D01G098600 chr3A 91.925 743 36 8 3 722 63468027 63468768 0.000000e+00 1018
16 TraesCS3D01G098600 chr3A 81.543 661 72 27 2479 3116 63390579 63391212 1.870000e-137 499
17 TraesCS3D01G098600 chr3A 89.446 379 35 4 1455 1830 63387379 63387755 1.130000e-129 473
18 TraesCS3D01G098600 chr3A 92.241 116 9 0 754 869 63426457 63426572 7.730000e-37 165
19 TraesCS3D01G098600 chr3A 85.629 167 10 5 855 1021 63426591 63426743 2.780000e-36 163
20 TraesCS3D01G098600 chr1B 78.781 886 174 13 1603 2481 101527996 101527118 1.800000e-162 582
21 TraesCS3D01G098600 chr1B 81.728 301 37 10 1218 1509 101528289 101527998 5.810000e-58 235
22 TraesCS3D01G098600 chr1D 78.668 886 175 12 1603 2481 63429260 63428382 8.380000e-161 577
23 TraesCS3D01G098600 chr1A 75.874 887 198 15 1603 2481 62009654 62010532 4.120000e-119 438
24 TraesCS3D01G098600 chr5B 85.065 154 13 4 2478 2621 77588109 77588262 7.780000e-32 148
25 TraesCS3D01G098600 chr5B 82.979 141 15 5 317 448 698456473 698456613 6.100000e-23 119
26 TraesCS3D01G098600 chr2A 84.667 150 14 8 316 458 739302568 739302421 1.300000e-29 141
27 TraesCS3D01G098600 chr2A 86.726 113 13 1 316 426 457941040 457940928 1.310000e-24 124
28 TraesCS3D01G098600 chr7D 84.000 150 15 6 316 458 507424700 507424553 6.060000e-28 135
29 TraesCS3D01G098600 chr5A 86.260 131 10 4 2488 2611 70171738 70171609 6.060000e-28 135
30 TraesCS3D01G098600 chr5A 83.784 148 18 3 316 460 466009863 466009719 6.060000e-28 135
31 TraesCS3D01G098600 chr2B 83.221 149 19 3 316 458 243784806 243784658 7.840000e-27 132
32 TraesCS3D01G098600 chr2D 85.841 113 14 1 316 426 345830789 345830901 6.100000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G098600 chr3D 50380296 50383776 3480 False 6429.00 6429 100.000000 1 3481 1 chr3D.!!$F1 3480
1 TraesCS3D01G098600 chr3D 50074649 50079096 4447 False 850.25 2322 90.341750 717 3404 4 chr3D.!!$F4 2687
2 TraesCS3D01G098600 chr3B 79781444 79785831 4387 False 1667.50 3120 88.698000 754 3335 2 chr3B.!!$F2 2581
3 TraesCS3D01G098600 chr3B 79559686 79562534 2848 False 838.00 2359 89.800500 717 3404 4 chr3B.!!$F1 2687
4 TraesCS3D01G098600 chr3A 63434161 63435575 1414 False 1803.00 1803 89.641000 1044 2481 1 chr3A.!!$F1 1437
5 TraesCS3D01G098600 chr3A 63468027 63468768 741 False 1018.00 1018 91.925000 3 722 1 chr3A.!!$F2 719
6 TraesCS3D01G098600 chr3A 63387379 63391212 3833 False 938.00 1842 87.403667 1120 3116 3 chr3A.!!$F3 1996
7 TraesCS3D01G098600 chr1B 101527118 101528289 1171 True 408.50 582 80.254500 1218 2481 2 chr1B.!!$R1 1263
8 TraesCS3D01G098600 chr1D 63428382 63429260 878 True 577.00 577 78.668000 1603 2481 1 chr1D.!!$R1 878
9 TraesCS3D01G098600 chr1A 62009654 62010532 878 False 438.00 438 75.874000 1603 2481 1 chr1A.!!$F1 878

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 482 0.037303 TCGTGAACGGAGGGAGTAGT 59.963 55.000 2.59 0.00 40.29 2.73 F
460 483 0.886563 CGTGAACGGAGGGAGTAGTT 59.113 55.000 0.00 0.00 35.37 2.24 F
615 638 2.223845 GCCATGTTGTTGTTTCAATGGC 59.776 45.455 8.57 8.57 42.31 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 4168 2.028930 CGAGTAGTTCCTGCTCTTGGTT 60.029 50.000 7.57 0.0 40.25 3.67 R
2447 4537 5.335976 CCGTTGAATCTCTCGGATGATGATA 60.336 44.000 0.00 0.0 44.86 2.15 R
2546 4674 3.181476 GGACAAACAAGCAACTGGACAAT 60.181 43.478 0.00 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 136 2.752030 TGAATCCCTAGCAGCACTACT 58.248 47.619 0.00 0.00 0.00 2.57
174 196 7.947282 TGGCTTTTACAAGTAATTTTAGCACT 58.053 30.769 13.64 0.00 31.86 4.40
268 291 1.315257 ATGGACCAACTGCATTCGGC 61.315 55.000 0.00 0.00 45.13 5.54
285 308 1.339055 CGGCCATCCTTGAGAAAGTCA 60.339 52.381 2.24 0.00 0.00 3.41
311 334 5.663556 AGGATTCCTCTAGGTCCAAACTAAG 59.336 44.000 0.00 0.00 33.91 2.18
321 344 2.370849 GTCCAAACTAAGACACCCTCCA 59.629 50.000 0.00 0.00 33.08 3.86
359 382 9.479549 AAGATGTTGGATGTTTTAATATGGACT 57.520 29.630 0.00 0.00 0.00 3.85
362 385 6.435591 TGTTGGATGTTTTAATATGGACTGCA 59.564 34.615 0.00 0.00 0.00 4.41
363 386 7.123997 TGTTGGATGTTTTAATATGGACTGCAT 59.876 33.333 0.00 0.00 0.00 3.96
364 387 8.629158 GTTGGATGTTTTAATATGGACTGCATA 58.371 33.333 0.00 0.00 0.00 3.14
365 388 8.165239 TGGATGTTTTAATATGGACTGCATAC 57.835 34.615 0.00 0.00 0.00 2.39
368 391 6.350103 TGTTTTAATATGGACTGCATACGGA 58.650 36.000 0.00 0.00 0.00 4.69
369 392 6.259167 TGTTTTAATATGGACTGCATACGGAC 59.741 38.462 0.00 0.00 0.00 4.79
372 395 1.040893 ATGGACTGCATACGGACCGA 61.041 55.000 23.38 4.52 39.57 4.69
373 396 1.252215 TGGACTGCATACGGACCGAA 61.252 55.000 23.38 0.00 39.57 4.30
374 397 0.108520 GGACTGCATACGGACCGAAA 60.109 55.000 23.38 8.65 0.00 3.46
375 398 1.472728 GGACTGCATACGGACCGAAAT 60.473 52.381 23.38 10.80 0.00 2.17
376 399 1.593006 GACTGCATACGGACCGAAATG 59.407 52.381 23.38 22.37 0.00 2.32
378 401 1.860950 CTGCATACGGACCGAAATGAG 59.139 52.381 27.01 19.44 0.00 2.90
379 402 1.206132 TGCATACGGACCGAAATGAGT 59.794 47.619 27.01 7.07 0.00 3.41
381 404 2.737359 GCATACGGACCGAAATGAGTGA 60.737 50.000 27.01 3.46 0.00 3.41
382 405 3.517602 CATACGGACCGAAATGAGTGAA 58.482 45.455 23.38 0.00 0.00 3.18
383 406 1.792006 ACGGACCGAAATGAGTGAAC 58.208 50.000 23.38 0.00 0.00 3.18
384 407 1.069513 ACGGACCGAAATGAGTGAACA 59.930 47.619 23.38 0.00 0.00 3.18
385 408 2.139917 CGGACCGAAATGAGTGAACAA 58.860 47.619 8.64 0.00 0.00 2.83
386 409 2.546368 CGGACCGAAATGAGTGAACAAA 59.454 45.455 8.64 0.00 0.00 2.83
387 410 3.606153 CGGACCGAAATGAGTGAACAAAC 60.606 47.826 8.64 0.00 0.00 2.93
388 411 3.314080 GGACCGAAATGAGTGAACAAACA 59.686 43.478 0.00 0.00 0.00 2.83
389 412 4.279659 GACCGAAATGAGTGAACAAACAC 58.720 43.478 0.00 0.00 40.60 3.32
390 413 3.692101 ACCGAAATGAGTGAACAAACACA 59.308 39.130 0.00 0.00 42.45 3.72
391 414 4.035017 CCGAAATGAGTGAACAAACACAC 58.965 43.478 0.00 0.00 42.45 3.82
450 473 9.976511 AAATTAGATCTTATATTCGTGAACGGA 57.023 29.630 0.00 0.00 40.29 4.69
451 474 9.627395 AATTAGATCTTATATTCGTGAACGGAG 57.373 33.333 0.00 0.00 40.29 4.63
452 475 6.015027 AGATCTTATATTCGTGAACGGAGG 57.985 41.667 2.59 0.00 40.29 4.30
456 479 1.843368 TATTCGTGAACGGAGGGAGT 58.157 50.000 2.59 0.00 40.29 3.85
458 481 1.171308 TTCGTGAACGGAGGGAGTAG 58.829 55.000 2.59 0.00 40.29 2.57
459 482 0.037303 TCGTGAACGGAGGGAGTAGT 59.963 55.000 2.59 0.00 40.29 2.73
460 483 0.886563 CGTGAACGGAGGGAGTAGTT 59.113 55.000 0.00 0.00 35.37 2.24
466 489 4.041198 TGAACGGAGGGAGTAGTTTTCAAT 59.959 41.667 0.00 0.00 0.00 2.57
468 491 4.324267 ACGGAGGGAGTAGTTTTCAATTG 58.676 43.478 0.00 0.00 0.00 2.32
469 492 3.127030 CGGAGGGAGTAGTTTTCAATTGC 59.873 47.826 0.00 0.00 0.00 3.56
470 493 4.079253 GGAGGGAGTAGTTTTCAATTGCA 58.921 43.478 0.00 0.00 0.00 4.08
472 495 5.885912 GGAGGGAGTAGTTTTCAATTGCATA 59.114 40.000 0.00 0.00 0.00 3.14
473 496 6.377146 GGAGGGAGTAGTTTTCAATTGCATAA 59.623 38.462 0.00 0.00 0.00 1.90
474 497 7.093945 GGAGGGAGTAGTTTTCAATTGCATAAA 60.094 37.037 0.00 0.00 0.00 1.40
475 498 8.366359 AGGGAGTAGTTTTCAATTGCATAAAT 57.634 30.769 0.00 0.00 0.00 1.40
476 499 8.253113 AGGGAGTAGTTTTCAATTGCATAAATG 58.747 33.333 0.00 0.00 0.00 2.32
477 500 8.034804 GGGAGTAGTTTTCAATTGCATAAATGT 58.965 33.333 0.00 0.00 0.00 2.71
479 502 9.846248 GAGTAGTTTTCAATTGCATAAATGTCT 57.154 29.630 0.00 2.22 0.00 3.41
482 505 7.799784 AGTTTTCAATTGCATAAATGTCTTGC 58.200 30.769 0.00 0.00 36.91 4.01
483 506 6.724694 TTTCAATTGCATAAATGTCTTGCC 57.275 33.333 0.00 0.00 35.51 4.52
485 508 6.772360 TCAATTGCATAAATGTCTTGCCTA 57.228 33.333 0.00 0.00 35.51 3.93
486 509 7.167924 TCAATTGCATAAATGTCTTGCCTAA 57.832 32.000 0.00 0.00 35.51 2.69
487 510 7.609960 TCAATTGCATAAATGTCTTGCCTAAA 58.390 30.769 0.00 0.00 35.51 1.85
490 513 7.830940 TTGCATAAATGTCTTGCCTAAAATG 57.169 32.000 0.00 0.00 35.51 2.32
491 514 7.167924 TGCATAAATGTCTTGCCTAAAATGA 57.832 32.000 0.00 0.00 35.51 2.57
492 515 7.035004 TGCATAAATGTCTTGCCTAAAATGAC 58.965 34.615 0.00 0.00 35.51 3.06
493 516 7.035004 GCATAAATGTCTTGCCTAAAATGACA 58.965 34.615 0.00 0.00 41.07 3.58
500 523 8.579850 TGTCTTGCCTAAAATGACATTATTCT 57.420 30.769 0.00 0.00 33.45 2.40
502 525 8.677300 GTCTTGCCTAAAATGACATTATTCTCA 58.323 33.333 0.00 0.00 0.00 3.27
505 528 7.999679 TGCCTAAAATGACATTATTCTCAAGG 58.000 34.615 0.00 3.99 0.00 3.61
506 529 7.833682 TGCCTAAAATGACATTATTCTCAAGGA 59.166 33.333 0.00 0.00 0.00 3.36
507 530 8.348507 GCCTAAAATGACATTATTCTCAAGGAG 58.651 37.037 0.00 0.00 0.00 3.69
509 532 7.951347 AAAATGACATTATTCTCAAGGAGCT 57.049 32.000 0.00 0.00 0.00 4.09
511 534 9.638176 AAAATGACATTATTCTCAAGGAGCTAT 57.362 29.630 0.00 0.00 0.00 2.97
512 535 9.638176 AAATGACATTATTCTCAAGGAGCTATT 57.362 29.630 0.00 0.00 0.00 1.73
513 536 9.638176 AATGACATTATTCTCAAGGAGCTATTT 57.362 29.630 0.00 0.00 0.00 1.40
516 539 8.230472 ACATTATTCTCAAGGAGCTATTTTGG 57.770 34.615 0.00 0.00 0.00 3.28
517 540 8.055181 ACATTATTCTCAAGGAGCTATTTTGGA 58.945 33.333 0.00 0.00 0.00 3.53
518 541 9.075678 CATTATTCTCAAGGAGCTATTTTGGAT 57.924 33.333 0.00 0.00 0.00 3.41
519 542 8.682936 TTATTCTCAAGGAGCTATTTTGGATC 57.317 34.615 0.00 0.00 0.00 3.36
520 543 5.041191 TCTCAAGGAGCTATTTTGGATCC 57.959 43.478 4.20 4.20 39.31 3.36
528 551 8.454859 AGGAGCTATTTTGGATCCTATTATGA 57.545 34.615 14.23 0.00 46.17 2.15
530 553 9.692325 GGAGCTATTTTGGATCCTATTATGAAT 57.308 33.333 14.23 4.44 36.45 2.57
536 559 9.887862 ATTTTGGATCCTATTATGAATTGGAGT 57.112 29.630 14.23 0.00 44.08 3.85
543 566 7.450074 TCCTATTATGAATTGGAGTAACGCAT 58.550 34.615 0.00 0.00 37.77 4.73
544 567 7.936847 TCCTATTATGAATTGGAGTAACGCATT 59.063 33.333 0.00 0.00 37.77 3.56
545 568 8.230486 CCTATTATGAATTGGAGTAACGCATTC 58.770 37.037 0.00 0.00 36.08 2.67
550 573 5.647658 TGAATTGGAGTAACGCATTCAGAAT 59.352 36.000 0.00 0.00 0.00 2.40
551 574 5.741388 ATTGGAGTAACGCATTCAGAATC 57.259 39.130 0.00 0.00 0.00 2.52
552 575 4.471904 TGGAGTAACGCATTCAGAATCT 57.528 40.909 0.00 0.00 0.00 2.40
553 576 4.183865 TGGAGTAACGCATTCAGAATCTG 58.816 43.478 3.38 3.38 0.00 2.90
554 577 4.081697 TGGAGTAACGCATTCAGAATCTGA 60.082 41.667 9.18 9.18 38.87 3.27
556 579 5.330455 AGTAACGCATTCAGAATCTGAGA 57.670 39.130 13.11 5.46 41.75 3.27
557 580 5.347342 AGTAACGCATTCAGAATCTGAGAG 58.653 41.667 13.11 10.71 41.75 3.20
559 582 3.779759 ACGCATTCAGAATCTGAGAGAC 58.220 45.455 13.11 4.18 41.75 3.36
560 583 3.194329 ACGCATTCAGAATCTGAGAGACA 59.806 43.478 13.11 0.00 41.75 3.41
561 584 4.179298 CGCATTCAGAATCTGAGAGACAA 58.821 43.478 13.11 0.00 41.75 3.18
562 585 4.628766 CGCATTCAGAATCTGAGAGACAAA 59.371 41.667 13.11 0.00 41.75 2.83
563 586 5.121298 CGCATTCAGAATCTGAGAGACAAAA 59.879 40.000 13.11 0.00 41.75 2.44
564 587 6.347969 CGCATTCAGAATCTGAGAGACAAAAA 60.348 38.462 13.11 0.00 41.75 1.94
569 592 9.650539 TTCAGAATCTGAGAGACAAAAAGATAG 57.349 33.333 13.11 0.00 41.75 2.08
571 594 9.086336 CAGAATCTGAGAGACAAAAAGATAGAC 57.914 37.037 3.77 0.00 32.44 2.59
572 595 8.811017 AGAATCTGAGAGACAAAAAGATAGACA 58.189 33.333 0.00 0.00 0.00 3.41
573 596 9.598517 GAATCTGAGAGACAAAAAGATAGACAT 57.401 33.333 0.00 0.00 0.00 3.06
576 599 9.249053 TCTGAGAGACAAAAAGATAGACATACT 57.751 33.333 0.00 0.00 0.00 2.12
577 600 9.515020 CTGAGAGACAAAAAGATAGACATACTC 57.485 37.037 0.00 0.00 0.00 2.59
578 601 9.249053 TGAGAGACAAAAAGATAGACATACTCT 57.751 33.333 0.00 0.00 33.51 3.24
595 618 8.824159 ACATACTCTAATATCAACACATGAGC 57.176 34.615 0.00 0.00 42.53 4.26
596 619 7.875041 ACATACTCTAATATCAACACATGAGCC 59.125 37.037 0.00 0.00 42.53 4.70
597 620 6.239217 ACTCTAATATCAACACATGAGCCA 57.761 37.500 0.00 0.00 42.53 4.75
598 621 6.835174 ACTCTAATATCAACACATGAGCCAT 58.165 36.000 0.00 0.00 42.53 4.40
599 622 6.709397 ACTCTAATATCAACACATGAGCCATG 59.291 38.462 0.00 12.06 46.18 3.66
610 633 3.979948 CATGAGCCATGTTGTTGTTTCA 58.020 40.909 6.93 0.00 37.12 2.69
611 634 4.370049 CATGAGCCATGTTGTTGTTTCAA 58.630 39.130 6.93 0.00 37.12 2.69
612 635 4.669206 TGAGCCATGTTGTTGTTTCAAT 57.331 36.364 0.00 0.00 0.00 2.57
613 636 4.370049 TGAGCCATGTTGTTGTTTCAATG 58.630 39.130 0.00 0.00 0.00 2.82
614 637 3.731089 AGCCATGTTGTTGTTTCAATGG 58.269 40.909 0.00 0.00 33.27 3.16
615 638 2.223845 GCCATGTTGTTGTTTCAATGGC 59.776 45.455 8.57 8.57 42.31 4.40
616 639 3.464907 CCATGTTGTTGTTTCAATGGCA 58.535 40.909 0.00 0.00 0.00 4.92
617 640 3.495377 CCATGTTGTTGTTTCAATGGCAG 59.505 43.478 0.00 0.00 0.00 4.85
618 641 4.370049 CATGTTGTTGTTTCAATGGCAGA 58.630 39.130 0.00 0.00 0.00 4.26
619 642 4.462508 TGTTGTTGTTTCAATGGCAGAA 57.537 36.364 0.00 0.00 0.00 3.02
620 643 4.825422 TGTTGTTGTTTCAATGGCAGAAA 58.175 34.783 0.00 0.00 32.93 2.52
621 644 5.240891 TGTTGTTGTTTCAATGGCAGAAAA 58.759 33.333 3.77 0.00 36.80 2.29
622 645 5.350914 TGTTGTTGTTTCAATGGCAGAAAAG 59.649 36.000 3.77 0.00 36.80 2.27
623 646 5.336150 TGTTGTTTCAATGGCAGAAAAGA 57.664 34.783 3.77 0.00 36.80 2.52
624 647 5.728471 TGTTGTTTCAATGGCAGAAAAGAA 58.272 33.333 3.77 1.56 36.80 2.52
625 648 5.811613 TGTTGTTTCAATGGCAGAAAAGAAG 59.188 36.000 3.77 0.00 36.80 2.85
626 649 5.596836 TGTTTCAATGGCAGAAAAGAAGT 57.403 34.783 3.77 0.00 36.80 3.01
627 650 5.976458 TGTTTCAATGGCAGAAAAGAAGTT 58.024 33.333 3.77 0.00 36.80 2.66
628 651 5.811613 TGTTTCAATGGCAGAAAAGAAGTTG 59.188 36.000 3.77 0.00 36.80 3.16
629 652 5.596836 TTCAATGGCAGAAAAGAAGTTGT 57.403 34.783 0.00 0.00 0.00 3.32
630 653 5.186996 TCAATGGCAGAAAAGAAGTTGTC 57.813 39.130 0.00 0.00 0.00 3.18
631 654 4.889409 TCAATGGCAGAAAAGAAGTTGTCT 59.111 37.500 0.00 0.00 38.69 3.41
632 655 5.009010 TCAATGGCAGAAAAGAAGTTGTCTC 59.991 40.000 0.00 0.00 34.56 3.36
633 656 4.156455 TGGCAGAAAAGAAGTTGTCTCT 57.844 40.909 0.00 0.00 34.56 3.10
634 657 4.130118 TGGCAGAAAAGAAGTTGTCTCTC 58.870 43.478 0.00 0.00 34.56 3.20
635 658 4.130118 GGCAGAAAAGAAGTTGTCTCTCA 58.870 43.478 0.00 0.00 34.56 3.27
636 659 4.576463 GGCAGAAAAGAAGTTGTCTCTCAA 59.424 41.667 0.00 0.00 34.56 3.02
650 673 8.014322 GTTGTCTCTCAACGTTATATTTGACA 57.986 34.615 0.00 8.48 45.23 3.58
651 674 7.576750 TGTCTCTCAACGTTATATTTGACAC 57.423 36.000 0.00 0.00 0.00 3.67
652 675 6.307077 TGTCTCTCAACGTTATATTTGACACG 59.693 38.462 0.00 0.00 38.62 4.49
653 676 5.287752 TCTCTCAACGTTATATTTGACACGC 59.712 40.000 0.00 0.00 36.05 5.34
654 677 5.165676 TCTCAACGTTATATTTGACACGCT 58.834 37.500 0.00 0.00 36.05 5.07
655 678 5.061684 TCTCAACGTTATATTTGACACGCTG 59.938 40.000 0.00 0.00 36.05 5.18
656 679 4.092237 TCAACGTTATATTTGACACGCTGG 59.908 41.667 0.00 0.00 36.05 4.85
657 680 3.592059 ACGTTATATTTGACACGCTGGT 58.408 40.909 0.00 0.00 36.05 4.00
658 681 4.746729 ACGTTATATTTGACACGCTGGTA 58.253 39.130 0.00 0.00 36.05 3.25
659 682 5.170021 ACGTTATATTTGACACGCTGGTAA 58.830 37.500 0.00 0.00 36.05 2.85
660 683 5.813672 ACGTTATATTTGACACGCTGGTAAT 59.186 36.000 0.00 0.00 36.05 1.89
661 684 6.126741 CGTTATATTTGACACGCTGGTAATG 58.873 40.000 0.00 0.00 0.00 1.90
662 685 6.019398 CGTTATATTTGACACGCTGGTAATGA 60.019 38.462 0.00 0.00 0.00 2.57
663 686 7.464844 CGTTATATTTGACACGCTGGTAATGAA 60.465 37.037 0.00 0.00 0.00 2.57
664 687 3.889196 TTTGACACGCTGGTAATGAAC 57.111 42.857 0.00 0.00 0.00 3.18
681 704 8.263940 GTAATGAACCATAAGTTTAGCAGTCA 57.736 34.615 0.00 0.00 39.40 3.41
682 705 7.759489 AATGAACCATAAGTTTAGCAGTCAA 57.241 32.000 0.00 0.00 39.40 3.18
683 706 6.801539 TGAACCATAAGTTTAGCAGTCAAG 57.198 37.500 0.00 0.00 39.40 3.02
684 707 6.530120 TGAACCATAAGTTTAGCAGTCAAGA 58.470 36.000 0.00 0.00 39.40 3.02
685 708 6.995686 TGAACCATAAGTTTAGCAGTCAAGAA 59.004 34.615 0.00 0.00 39.40 2.52
686 709 7.500892 TGAACCATAAGTTTAGCAGTCAAGAAA 59.499 33.333 0.00 0.00 39.40 2.52
687 710 7.817418 ACCATAAGTTTAGCAGTCAAGAAAA 57.183 32.000 0.00 0.00 0.00 2.29
688 711 8.409358 ACCATAAGTTTAGCAGTCAAGAAAAT 57.591 30.769 0.00 0.00 0.00 1.82
689 712 9.515226 ACCATAAGTTTAGCAGTCAAGAAAATA 57.485 29.630 0.00 0.00 0.00 1.40
690 713 9.774742 CCATAAGTTTAGCAGTCAAGAAAATAC 57.225 33.333 0.00 0.00 0.00 1.89
700 723 9.013229 AGCAGTCAAGAAAATACAATATTCACA 57.987 29.630 0.00 0.00 0.00 3.58
701 724 9.624697 GCAGTCAAGAAAATACAATATTCACAA 57.375 29.630 0.00 0.00 0.00 3.33
704 727 9.906660 GTCAAGAAAATACAATATTCACAACCA 57.093 29.630 0.00 0.00 0.00 3.67
814 837 3.508840 GCCCCGAATTGGTGCTCG 61.509 66.667 0.00 0.00 35.15 5.03
840 863 7.014615 GCATTCCAAGTAATAACCAGATTGGAT 59.985 37.037 5.38 0.00 44.06 3.41
951 1016 5.128499 CCAGTAGGTTGAAGTCATCTCTCAT 59.872 44.000 0.00 0.00 0.00 2.90
1042 1812 8.168790 TGTATGTAATCAATCATCCACAATGG 57.831 34.615 0.00 0.00 39.43 3.16
1122 1918 3.502595 GGGCAAAAGGAGTACTCAGTTTC 59.497 47.826 23.91 14.61 0.00 2.78
1366 3392 2.575455 CTACTCCGCCCTCCAGGACT 62.575 65.000 0.00 0.00 38.24 3.85
1527 3556 6.910972 CAGATCGCAAGTAAGTAGTAATCGAA 59.089 38.462 0.00 0.00 39.48 3.71
2546 4674 3.526534 TGAGATTCGTGTTGTTGTGTCA 58.473 40.909 0.00 0.00 0.00 3.58
2598 4726 1.352156 CGTGCAGCCCTCTCGTTAAC 61.352 60.000 0.00 0.00 0.00 2.01
2621 4757 5.303333 ACGGGCCTTTTTCTTTTTCTATTGA 59.697 36.000 0.84 0.00 0.00 2.57
2624 4760 7.387673 CGGGCCTTTTTCTTTTTCTATTGATTT 59.612 33.333 0.84 0.00 0.00 2.17
2626 4762 8.506437 GGCCTTTTTCTTTTTCTATTGATTTGG 58.494 33.333 0.00 0.00 0.00 3.28
2635 4771 3.006940 TCTATTGATTTGGTGCCGTCAC 58.993 45.455 0.00 0.00 42.40 3.67
2670 4806 1.600485 GGTCGTCGTGTTTGATTTGGT 59.400 47.619 0.00 0.00 0.00 3.67
2674 4810 2.286833 CGTCGTGTTTGATTTGGTCAGT 59.713 45.455 0.00 0.00 38.29 3.41
2675 4811 3.242608 CGTCGTGTTTGATTTGGTCAGTT 60.243 43.478 0.00 0.00 38.29 3.16
2795 7213 5.268118 TCTACAGGATGCTACTTCACATG 57.732 43.478 0.00 0.00 42.53 3.21
2796 7214 4.956075 TCTACAGGATGCTACTTCACATGA 59.044 41.667 0.00 0.00 42.53 3.07
2797 7215 4.558226 ACAGGATGCTACTTCACATGAA 57.442 40.909 0.00 0.00 42.53 2.57
2798 7216 4.256920 ACAGGATGCTACTTCACATGAAC 58.743 43.478 0.00 0.00 42.53 3.18
2799 7217 3.308053 CAGGATGCTACTTCACATGAACG 59.692 47.826 0.00 0.00 0.00 3.95
2800 7218 3.055819 AGGATGCTACTTCACATGAACGT 60.056 43.478 0.00 0.00 0.00 3.99
2801 7219 3.062639 GGATGCTACTTCACATGAACGTG 59.937 47.826 0.00 0.00 38.29 4.49
2802 7220 3.378911 TGCTACTTCACATGAACGTGA 57.621 42.857 0.00 0.00 44.05 4.35
2803 7221 3.925379 TGCTACTTCACATGAACGTGAT 58.075 40.909 0.00 0.00 45.03 3.06
2804 7222 3.926527 TGCTACTTCACATGAACGTGATC 59.073 43.478 0.00 0.00 45.03 2.92
2805 7223 3.307242 GCTACTTCACATGAACGTGATCC 59.693 47.826 0.00 0.00 45.03 3.36
2806 7224 3.685139 ACTTCACATGAACGTGATCCT 57.315 42.857 0.00 0.00 45.03 3.24
2807 7225 4.008074 ACTTCACATGAACGTGATCCTT 57.992 40.909 0.00 0.00 45.03 3.36
2808 7226 4.389374 ACTTCACATGAACGTGATCCTTT 58.611 39.130 0.00 0.00 45.03 3.11
2809 7227 4.821805 ACTTCACATGAACGTGATCCTTTT 59.178 37.500 0.00 0.00 45.03 2.27
2810 7228 5.299279 ACTTCACATGAACGTGATCCTTTTT 59.701 36.000 0.00 0.00 45.03 1.94
2811 7229 5.107109 TCACATGAACGTGATCCTTTTTG 57.893 39.130 0.00 0.00 40.94 2.44
2812 7230 4.578516 TCACATGAACGTGATCCTTTTTGT 59.421 37.500 0.00 0.00 40.94 2.83
2848 7285 7.027874 TGGACATTTGTACCCTCTTTCTTAT 57.972 36.000 0.00 0.00 0.00 1.73
3036 7486 9.093970 CCATTAGTCGTAGATCAAATTGTGTTA 57.906 33.333 0.00 0.00 40.67 2.41
3084 7534 0.041312 CGTGTTTTCAAGAGGTGCGG 60.041 55.000 0.00 0.00 0.00 5.69
3138 8171 6.438425 ACTGCATGTTTTTAAGAGGGATCAAT 59.562 34.615 0.00 0.00 0.00 2.57
3154 8187 5.579511 GGGATCAATTGCATGTTTTCAAGAG 59.420 40.000 0.00 0.00 0.00 2.85
3220 8253 3.074412 AGTTTTCAAGACGGATCGCAAT 58.926 40.909 0.00 0.00 0.00 3.56
3236 8269 4.876125 TCGCAATTGCATGTTTTTAAGGA 58.124 34.783 28.77 11.14 42.21 3.36
3276 8309 1.522668 TTCAAGATGGGTCGCAACTG 58.477 50.000 0.23 0.00 0.00 3.16
3285 8318 1.537990 GGGTCGCAACTGCATGTTTTT 60.538 47.619 2.12 0.00 42.21 1.94
3288 8321 3.987220 GGTCGCAACTGCATGTTTTTAAT 59.013 39.130 2.12 0.00 42.21 1.40
3289 8322 4.143347 GGTCGCAACTGCATGTTTTTAATG 60.143 41.667 2.12 0.00 42.21 1.90
3290 8348 4.679197 GTCGCAACTGCATGTTTTTAATGA 59.321 37.500 2.12 0.00 42.21 2.57
3291 8349 5.174761 GTCGCAACTGCATGTTTTTAATGAA 59.825 36.000 2.12 0.00 42.21 2.57
3296 8354 7.566709 CAACTGCATGTTTTTAATGAAAGGTC 58.433 34.615 0.00 0.00 36.63 3.85
3309 8367 1.001378 GAAAGGTCGCAACTGCATGTT 60.001 47.619 2.12 0.00 42.21 2.71
3365 8450 2.472816 GGGTCACAACTGCATGTTTTG 58.527 47.619 0.00 8.15 37.60 2.44
3370 8455 2.540931 CACAACTGCATGTTTTGAAGGC 59.459 45.455 8.57 0.00 38.28 4.35
3378 8463 0.248296 TGTTTTGAAGGCGTCGCAAC 60.248 50.000 20.50 13.60 0.00 4.17
3404 8489 0.178975 TGTTTTCAAGGGGGTCGCAT 60.179 50.000 0.00 0.00 0.00 4.73
3405 8490 0.966179 GTTTTCAAGGGGGTCGCATT 59.034 50.000 0.00 0.00 0.00 3.56
3406 8491 1.343142 GTTTTCAAGGGGGTCGCATTT 59.657 47.619 0.00 0.00 0.00 2.32
3407 8492 1.710816 TTTCAAGGGGGTCGCATTTT 58.289 45.000 0.00 0.00 0.00 1.82
3408 8493 1.710816 TTCAAGGGGGTCGCATTTTT 58.289 45.000 0.00 0.00 0.00 1.94
3409 8494 1.253100 TCAAGGGGGTCGCATTTTTC 58.747 50.000 0.00 0.00 0.00 2.29
3410 8495 0.109319 CAAGGGGGTCGCATTTTTCG 60.109 55.000 0.00 0.00 0.00 3.46
3411 8496 1.248101 AAGGGGGTCGCATTTTTCGG 61.248 55.000 0.00 0.00 0.00 4.30
3412 8497 2.706834 GGGGGTCGCATTTTTCGGG 61.707 63.158 0.00 0.00 0.00 5.14
3413 8498 2.706834 GGGGTCGCATTTTTCGGGG 61.707 63.158 0.00 0.00 0.00 5.73
3414 8499 1.676303 GGGTCGCATTTTTCGGGGA 60.676 57.895 0.00 0.00 0.00 4.81
3415 8500 1.654023 GGGTCGCATTTTTCGGGGAG 61.654 60.000 0.00 0.00 0.00 4.30
3416 8501 1.654023 GGTCGCATTTTTCGGGGAGG 61.654 60.000 0.00 0.00 0.00 4.30
3417 8502 1.377987 TCGCATTTTTCGGGGAGGG 60.378 57.895 0.00 0.00 0.00 4.30
3418 8503 2.414785 CGCATTTTTCGGGGAGGGG 61.415 63.158 0.00 0.00 0.00 4.79
3419 8504 2.058001 GCATTTTTCGGGGAGGGGG 61.058 63.158 0.00 0.00 0.00 5.40
3434 8519 2.987125 GGGGGCACGACTACATGT 59.013 61.111 2.69 2.69 0.00 3.21
3435 8520 1.298667 GGGGGCACGACTACATGTT 59.701 57.895 2.30 0.00 0.00 2.71
3436 8521 0.538118 GGGGGCACGACTACATGTTA 59.462 55.000 2.30 0.00 0.00 2.41
3437 8522 1.140252 GGGGGCACGACTACATGTTAT 59.860 52.381 2.30 0.00 0.00 1.89
3438 8523 2.480845 GGGGCACGACTACATGTTATC 58.519 52.381 2.30 0.88 0.00 1.75
3439 8524 2.102588 GGGGCACGACTACATGTTATCT 59.897 50.000 2.30 0.00 0.00 1.98
3440 8525 3.319972 GGGGCACGACTACATGTTATCTA 59.680 47.826 2.30 0.00 0.00 1.98
3441 8526 4.547532 GGGCACGACTACATGTTATCTAG 58.452 47.826 2.30 0.00 0.00 2.43
3442 8527 4.547532 GGCACGACTACATGTTATCTAGG 58.452 47.826 2.30 0.00 0.00 3.02
3443 8528 4.037684 GGCACGACTACATGTTATCTAGGT 59.962 45.833 2.30 0.00 0.00 3.08
3444 8529 5.451520 GGCACGACTACATGTTATCTAGGTT 60.452 44.000 2.30 0.00 0.00 3.50
3445 8530 6.040878 GCACGACTACATGTTATCTAGGTTT 58.959 40.000 2.30 0.00 0.00 3.27
3446 8531 7.198390 GCACGACTACATGTTATCTAGGTTTA 58.802 38.462 2.30 0.00 0.00 2.01
3447 8532 7.866393 GCACGACTACATGTTATCTAGGTTTAT 59.134 37.037 2.30 0.00 0.00 1.40
3448 8533 9.395707 CACGACTACATGTTATCTAGGTTTATC 57.604 37.037 2.30 0.00 0.00 1.75
3449 8534 8.288208 ACGACTACATGTTATCTAGGTTTATCG 58.712 37.037 2.30 2.56 0.00 2.92
3450 8535 7.270793 CGACTACATGTTATCTAGGTTTATCGC 59.729 40.741 2.30 0.00 0.00 4.58
3451 8536 7.948357 ACTACATGTTATCTAGGTTTATCGCA 58.052 34.615 2.30 0.00 0.00 5.10
3452 8537 8.418662 ACTACATGTTATCTAGGTTTATCGCAA 58.581 33.333 2.30 0.00 0.00 4.85
3453 8538 7.478520 ACATGTTATCTAGGTTTATCGCAAC 57.521 36.000 0.00 0.00 0.00 4.17
3454 8539 7.272978 ACATGTTATCTAGGTTTATCGCAACT 58.727 34.615 0.00 0.00 0.00 3.16
3455 8540 7.224753 ACATGTTATCTAGGTTTATCGCAACTG 59.775 37.037 0.00 0.00 0.00 3.16
3456 8541 5.522460 TGTTATCTAGGTTTATCGCAACTGC 59.478 40.000 0.00 0.00 37.78 4.40
3457 8542 3.603158 TCTAGGTTTATCGCAACTGCA 57.397 42.857 2.12 0.00 42.21 4.41
3458 8543 3.932822 TCTAGGTTTATCGCAACTGCAA 58.067 40.909 2.12 0.00 42.21 4.08
3459 8544 4.320023 TCTAGGTTTATCGCAACTGCAAA 58.680 39.130 2.12 0.00 42.21 3.68
3460 8545 3.282831 AGGTTTATCGCAACTGCAAAC 57.717 42.857 2.12 5.24 42.21 2.93
3461 8546 2.030274 AGGTTTATCGCAACTGCAAACC 60.030 45.455 19.82 19.82 46.41 3.27
3462 8547 2.324860 GTTTATCGCAACTGCAAACCC 58.675 47.619 2.12 0.00 42.21 4.11
3463 8548 0.885196 TTATCGCAACTGCAAACCCC 59.115 50.000 2.12 0.00 42.21 4.95
3464 8549 0.250945 TATCGCAACTGCAAACCCCA 60.251 50.000 2.12 0.00 42.21 4.96
3465 8550 1.112315 ATCGCAACTGCAAACCCCAA 61.112 50.000 2.12 0.00 42.21 4.12
3466 8551 1.112315 TCGCAACTGCAAACCCCAAT 61.112 50.000 2.12 0.00 42.21 3.16
3467 8552 0.945265 CGCAACTGCAAACCCCAATG 60.945 55.000 2.12 0.00 42.21 2.82
3468 8553 0.603439 GCAACTGCAAACCCCAATGG 60.603 55.000 0.00 0.00 41.59 3.16
3469 8554 3.254112 GCAACTGCAAACCCCAATGGT 62.254 52.381 0.00 0.00 45.66 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.640147 TGTGGACATCCCTATTCTTTTGTT 58.360 37.500 0.00 0.00 35.38 2.83
1 2 5.255397 TGTGGACATCCCTATTCTTTTGT 57.745 39.130 0.00 0.00 35.38 2.83
148 170 8.417884 AGTGCTAAAATTACTTGTAAAAGCCAA 58.582 29.630 0.00 0.00 0.00 4.52
168 190 6.990349 GGGTATCTGCATTTTAGTTAGTGCTA 59.010 38.462 0.00 0.00 38.37 3.49
174 196 6.668645 ACCATGGGTATCTGCATTTTAGTTA 58.331 36.000 18.09 0.00 32.11 2.24
219 241 8.141268 ACCTTTGGTTATGTTATGTTTCTGTTG 58.859 33.333 0.00 0.00 27.29 3.33
268 291 4.655963 TCCTTTGACTTTCTCAAGGATGG 58.344 43.478 0.00 0.00 40.12 3.51
285 308 4.852697 AGTTTGGACCTAGAGGAATCCTTT 59.147 41.667 2.09 0.00 38.94 3.11
311 334 8.519799 TCTTATATTTTTGAATGGAGGGTGTC 57.480 34.615 0.00 0.00 0.00 3.67
347 370 5.302360 GGTCCGTATGCAGTCCATATTAAA 58.698 41.667 0.00 0.00 38.60 1.52
348 371 4.559906 CGGTCCGTATGCAGTCCATATTAA 60.560 45.833 2.08 0.00 38.60 1.40
350 373 2.288825 CGGTCCGTATGCAGTCCATATT 60.289 50.000 2.08 0.00 38.60 1.28
351 374 1.272490 CGGTCCGTATGCAGTCCATAT 59.728 52.381 2.08 0.00 38.60 1.78
352 375 0.671796 CGGTCCGTATGCAGTCCATA 59.328 55.000 2.08 0.00 35.34 2.74
353 376 1.040893 TCGGTCCGTATGCAGTCCAT 61.041 55.000 11.88 0.00 37.97 3.41
354 377 1.252215 TTCGGTCCGTATGCAGTCCA 61.252 55.000 11.88 0.00 0.00 4.02
355 378 0.108520 TTTCGGTCCGTATGCAGTCC 60.109 55.000 11.88 0.00 0.00 3.85
356 379 1.593006 CATTTCGGTCCGTATGCAGTC 59.407 52.381 11.88 0.00 0.00 3.51
357 380 1.206132 TCATTTCGGTCCGTATGCAGT 59.794 47.619 11.88 0.00 0.00 4.40
358 381 1.860950 CTCATTTCGGTCCGTATGCAG 59.139 52.381 11.88 11.03 0.00 4.41
359 382 1.206132 ACTCATTTCGGTCCGTATGCA 59.794 47.619 11.88 0.00 0.00 3.96
362 385 3.056393 TGTTCACTCATTTCGGTCCGTAT 60.056 43.478 11.88 3.50 0.00 3.06
363 386 2.296752 TGTTCACTCATTTCGGTCCGTA 59.703 45.455 11.88 0.00 0.00 4.02
364 387 1.069513 TGTTCACTCATTTCGGTCCGT 59.930 47.619 11.88 0.00 0.00 4.69
365 388 1.790755 TGTTCACTCATTTCGGTCCG 58.209 50.000 4.39 4.39 0.00 4.79
368 391 3.692101 TGTGTTTGTTCACTCATTTCGGT 59.308 39.130 0.00 0.00 38.90 4.69
369 392 4.035017 GTGTGTTTGTTCACTCATTTCGG 58.965 43.478 0.00 0.00 38.90 4.30
378 401 5.685195 CACATTTGAGTGTGTTTGTTCAC 57.315 39.130 0.00 0.00 43.43 3.18
424 447 9.976511 TCCGTTCACGAATATAAGATCTAATTT 57.023 29.630 0.00 0.00 43.02 1.82
426 449 8.244802 CCTCCGTTCACGAATATAAGATCTAAT 58.755 37.037 0.00 0.00 43.02 1.73
427 450 7.309012 CCCTCCGTTCACGAATATAAGATCTAA 60.309 40.741 0.00 0.00 43.02 2.10
429 452 5.047943 CCCTCCGTTCACGAATATAAGATCT 60.048 44.000 0.00 0.00 43.02 2.75
430 453 5.048224 TCCCTCCGTTCACGAATATAAGATC 60.048 44.000 0.00 0.00 43.02 2.75
432 455 4.209538 TCCCTCCGTTCACGAATATAAGA 58.790 43.478 0.00 0.00 43.02 2.10
433 456 4.037684 ACTCCCTCCGTTCACGAATATAAG 59.962 45.833 0.00 0.00 43.02 1.73
434 457 3.956199 ACTCCCTCCGTTCACGAATATAA 59.044 43.478 0.00 0.00 43.02 0.98
435 458 3.559069 ACTCCCTCCGTTCACGAATATA 58.441 45.455 0.00 0.00 43.02 0.86
436 459 2.385803 ACTCCCTCCGTTCACGAATAT 58.614 47.619 0.00 0.00 43.02 1.28
437 460 1.843368 ACTCCCTCCGTTCACGAATA 58.157 50.000 0.00 0.00 43.02 1.75
439 462 1.171308 CTACTCCCTCCGTTCACGAA 58.829 55.000 0.00 0.00 43.02 3.85
440 463 0.037303 ACTACTCCCTCCGTTCACGA 59.963 55.000 0.00 0.00 43.02 4.35
441 464 0.886563 AACTACTCCCTCCGTTCACG 59.113 55.000 0.00 0.00 39.44 4.35
442 465 3.243975 TGAAAACTACTCCCTCCGTTCAC 60.244 47.826 0.00 0.00 0.00 3.18
444 467 3.672767 TGAAAACTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
445 468 4.635699 ATTGAAAACTACTCCCTCCGTT 57.364 40.909 0.00 0.00 0.00 4.44
447 470 3.127030 GCAATTGAAAACTACTCCCTCCG 59.873 47.826 10.34 0.00 0.00 4.63
448 471 4.079253 TGCAATTGAAAACTACTCCCTCC 58.921 43.478 10.34 0.00 0.00 4.30
449 472 5.904362 ATGCAATTGAAAACTACTCCCTC 57.096 39.130 10.34 0.00 0.00 4.30
450 473 7.775053 TTTATGCAATTGAAAACTACTCCCT 57.225 32.000 10.34 0.00 0.00 4.20
451 474 8.034804 ACATTTATGCAATTGAAAACTACTCCC 58.965 33.333 10.34 0.00 0.00 4.30
452 475 8.986477 ACATTTATGCAATTGAAAACTACTCC 57.014 30.769 10.34 0.00 0.00 3.85
456 479 8.924691 GCAAGACATTTATGCAATTGAAAACTA 58.075 29.630 10.34 0.00 39.81 2.24
458 481 7.017055 GGCAAGACATTTATGCAATTGAAAAC 58.983 34.615 10.34 0.00 41.80 2.43
459 482 6.935771 AGGCAAGACATTTATGCAATTGAAAA 59.064 30.769 10.34 6.57 41.80 2.29
460 483 6.465948 AGGCAAGACATTTATGCAATTGAAA 58.534 32.000 10.34 1.15 41.80 2.69
466 489 7.545265 GTCATTTTAGGCAAGACATTTATGCAA 59.455 33.333 0.00 0.00 41.80 4.08
468 491 7.035004 TGTCATTTTAGGCAAGACATTTATGC 58.965 34.615 0.00 0.00 39.33 3.14
475 498 8.579850 AGAATAATGTCATTTTAGGCAAGACA 57.420 30.769 2.79 0.00 42.62 3.41
476 499 8.677300 TGAGAATAATGTCATTTTAGGCAAGAC 58.323 33.333 2.79 0.00 0.00 3.01
477 500 8.806429 TGAGAATAATGTCATTTTAGGCAAGA 57.194 30.769 2.79 0.00 0.00 3.02
479 502 8.469200 CCTTGAGAATAATGTCATTTTAGGCAA 58.531 33.333 2.79 3.65 0.00 4.52
480 503 7.833682 TCCTTGAGAATAATGTCATTTTAGGCA 59.166 33.333 2.79 0.00 0.00 4.75
481 504 8.225603 TCCTTGAGAATAATGTCATTTTAGGC 57.774 34.615 2.79 0.00 0.00 3.93
482 505 8.348507 GCTCCTTGAGAATAATGTCATTTTAGG 58.651 37.037 2.79 0.08 0.00 2.69
483 506 9.118300 AGCTCCTTGAGAATAATGTCATTTTAG 57.882 33.333 2.79 0.00 0.00 1.85
485 508 7.951347 AGCTCCTTGAGAATAATGTCATTTT 57.049 32.000 2.79 0.00 0.00 1.82
486 509 9.638176 AATAGCTCCTTGAGAATAATGTCATTT 57.362 29.630 2.79 0.00 0.00 2.32
487 510 9.638176 AAATAGCTCCTTGAGAATAATGTCATT 57.362 29.630 3.06 3.06 0.00 2.57
490 513 8.348507 CCAAAATAGCTCCTTGAGAATAATGTC 58.651 37.037 0.00 0.00 0.00 3.06
491 514 8.055181 TCCAAAATAGCTCCTTGAGAATAATGT 58.945 33.333 0.00 0.00 0.00 2.71
492 515 8.455903 TCCAAAATAGCTCCTTGAGAATAATG 57.544 34.615 0.00 0.00 0.00 1.90
493 516 9.294614 GATCCAAAATAGCTCCTTGAGAATAAT 57.705 33.333 0.00 0.00 0.00 1.28
495 518 7.072961 AGGATCCAAAATAGCTCCTTGAGAATA 59.927 37.037 15.82 0.00 32.38 1.75
496 519 6.067350 GGATCCAAAATAGCTCCTTGAGAAT 58.933 40.000 6.95 0.00 0.00 2.40
497 520 5.192522 AGGATCCAAAATAGCTCCTTGAGAA 59.807 40.000 15.82 0.00 32.38 2.87
498 521 4.723789 AGGATCCAAAATAGCTCCTTGAGA 59.276 41.667 15.82 0.00 32.38 3.27
500 523 6.770286 ATAGGATCCAAAATAGCTCCTTGA 57.230 37.500 15.82 0.00 37.51 3.02
502 525 8.894592 TCATAATAGGATCCAAAATAGCTCCTT 58.105 33.333 15.82 0.00 37.51 3.36
510 533 9.887862 ACTCCAATTCATAATAGGATCCAAAAT 57.112 29.630 15.82 1.15 0.00 1.82
513 536 9.793259 GTTACTCCAATTCATAATAGGATCCAA 57.207 33.333 15.82 0.00 0.00 3.53
516 539 7.602644 TGCGTTACTCCAATTCATAATAGGATC 59.397 37.037 0.00 0.00 0.00 3.36
517 540 7.450074 TGCGTTACTCCAATTCATAATAGGAT 58.550 34.615 0.00 0.00 0.00 3.24
518 541 6.822442 TGCGTTACTCCAATTCATAATAGGA 58.178 36.000 0.00 0.00 0.00 2.94
519 542 7.672983 ATGCGTTACTCCAATTCATAATAGG 57.327 36.000 0.00 0.00 0.00 2.57
520 543 8.773645 TGAATGCGTTACTCCAATTCATAATAG 58.226 33.333 0.00 0.00 0.00 1.73
522 545 7.498900 TCTGAATGCGTTACTCCAATTCATAAT 59.501 33.333 0.00 0.00 0.00 1.28
523 546 6.821160 TCTGAATGCGTTACTCCAATTCATAA 59.179 34.615 0.00 0.00 0.00 1.90
525 548 5.185454 TCTGAATGCGTTACTCCAATTCAT 58.815 37.500 0.00 0.00 0.00 2.57
526 549 4.574892 TCTGAATGCGTTACTCCAATTCA 58.425 39.130 0.00 0.00 0.00 2.57
527 550 5.545658 TTCTGAATGCGTTACTCCAATTC 57.454 39.130 0.00 0.00 0.00 2.17
528 551 5.882557 AGATTCTGAATGCGTTACTCCAATT 59.117 36.000 7.78 0.00 0.00 2.32
530 553 4.631377 CAGATTCTGAATGCGTTACTCCAA 59.369 41.667 7.78 0.00 32.44 3.53
533 556 5.344066 TCTCAGATTCTGAATGCGTTACTC 58.656 41.667 16.79 0.00 40.18 2.59
534 557 5.126222 TCTCTCAGATTCTGAATGCGTTACT 59.874 40.000 16.79 0.00 40.18 2.24
535 558 5.231147 GTCTCTCAGATTCTGAATGCGTTAC 59.769 44.000 16.79 5.77 40.18 2.50
536 559 5.105756 TGTCTCTCAGATTCTGAATGCGTTA 60.106 40.000 16.79 0.00 40.18 3.18
537 560 4.180057 GTCTCTCAGATTCTGAATGCGTT 58.820 43.478 16.79 0.00 40.18 4.84
543 566 9.650539 CTATCTTTTTGTCTCTCAGATTCTGAA 57.349 33.333 16.79 7.81 40.18 3.02
544 567 9.029368 TCTATCTTTTTGTCTCTCAGATTCTGA 57.971 33.333 15.39 15.39 38.25 3.27
545 568 9.086336 GTCTATCTTTTTGTCTCTCAGATTCTG 57.914 37.037 7.38 7.38 0.00 3.02
550 573 9.249053 AGTATGTCTATCTTTTTGTCTCTCAGA 57.751 33.333 0.00 0.00 0.00 3.27
551 574 9.515020 GAGTATGTCTATCTTTTTGTCTCTCAG 57.485 37.037 0.00 0.00 0.00 3.35
552 575 9.249053 AGAGTATGTCTATCTTTTTGTCTCTCA 57.751 33.333 0.00 0.00 31.71 3.27
569 592 8.920665 GCTCATGTGTTGATATTAGAGTATGTC 58.079 37.037 0.00 0.00 32.72 3.06
571 594 7.874528 TGGCTCATGTGTTGATATTAGAGTATG 59.125 37.037 0.00 0.00 32.72 2.39
572 595 7.966812 TGGCTCATGTGTTGATATTAGAGTAT 58.033 34.615 0.00 0.00 32.72 2.12
573 596 7.360113 TGGCTCATGTGTTGATATTAGAGTA 57.640 36.000 0.00 0.00 32.72 2.59
574 597 6.239217 TGGCTCATGTGTTGATATTAGAGT 57.761 37.500 0.00 0.00 32.72 3.24
575 598 7.130303 CATGGCTCATGTGTTGATATTAGAG 57.870 40.000 6.93 0.00 37.12 2.43
589 612 3.979948 TGAAACAACAACATGGCTCATG 58.020 40.909 12.06 12.06 46.18 3.07
590 613 4.669206 TTGAAACAACAACATGGCTCAT 57.331 36.364 0.00 0.00 0.00 2.90
591 614 4.370049 CATTGAAACAACAACATGGCTCA 58.630 39.130 0.00 0.00 32.50 4.26
592 615 3.742369 CCATTGAAACAACAACATGGCTC 59.258 43.478 0.00 0.00 32.50 4.70
593 616 3.731089 CCATTGAAACAACAACATGGCT 58.269 40.909 0.00 0.00 32.50 4.75
594 617 2.223845 GCCATTGAAACAACAACATGGC 59.776 45.455 5.27 5.27 43.61 4.40
595 618 3.464907 TGCCATTGAAACAACAACATGG 58.535 40.909 0.00 0.00 34.76 3.66
596 619 4.370049 TCTGCCATTGAAACAACAACATG 58.630 39.130 0.00 0.00 32.50 3.21
597 620 4.669206 TCTGCCATTGAAACAACAACAT 57.331 36.364 0.00 0.00 32.50 2.71
598 621 4.462508 TTCTGCCATTGAAACAACAACA 57.537 36.364 0.00 0.00 32.50 3.33
599 622 5.580297 TCTTTTCTGCCATTGAAACAACAAC 59.420 36.000 0.00 0.00 33.77 3.32
600 623 5.728471 TCTTTTCTGCCATTGAAACAACAA 58.272 33.333 0.00 0.00 33.77 2.83
601 624 5.336150 TCTTTTCTGCCATTGAAACAACA 57.664 34.783 0.00 0.00 33.77 3.33
602 625 5.812127 ACTTCTTTTCTGCCATTGAAACAAC 59.188 36.000 0.00 0.00 33.77 3.32
603 626 5.976458 ACTTCTTTTCTGCCATTGAAACAA 58.024 33.333 0.00 0.00 33.77 2.83
604 627 5.596836 ACTTCTTTTCTGCCATTGAAACA 57.403 34.783 0.00 0.00 33.77 2.83
605 628 5.812127 ACAACTTCTTTTCTGCCATTGAAAC 59.188 36.000 0.00 0.00 33.77 2.78
606 629 5.976458 ACAACTTCTTTTCTGCCATTGAAA 58.024 33.333 0.00 0.00 0.00 2.69
607 630 5.360714 AGACAACTTCTTTTCTGCCATTGAA 59.639 36.000 0.00 0.00 0.00 2.69
608 631 4.889409 AGACAACTTCTTTTCTGCCATTGA 59.111 37.500 0.00 0.00 0.00 2.57
609 632 5.009410 AGAGACAACTTCTTTTCTGCCATTG 59.991 40.000 0.00 0.00 33.22 2.82
610 633 5.136105 AGAGACAACTTCTTTTCTGCCATT 58.864 37.500 0.00 0.00 33.22 3.16
611 634 4.723309 AGAGACAACTTCTTTTCTGCCAT 58.277 39.130 0.00 0.00 33.22 4.40
612 635 4.130118 GAGAGACAACTTCTTTTCTGCCA 58.870 43.478 0.00 0.00 33.22 4.92
613 636 4.130118 TGAGAGACAACTTCTTTTCTGCC 58.870 43.478 0.00 0.00 33.22 4.85
614 637 5.741388 TTGAGAGACAACTTCTTTTCTGC 57.259 39.130 0.00 0.00 33.22 4.26
626 649 7.148869 CGTGTCAAATATAACGTTGAGAGACAA 60.149 37.037 11.99 0.00 34.52 3.18
627 650 6.307077 CGTGTCAAATATAACGTTGAGAGACA 59.693 38.462 11.99 13.71 34.52 3.41
628 651 6.683883 CGTGTCAAATATAACGTTGAGAGAC 58.316 40.000 11.99 11.42 34.52 3.36
629 652 5.287752 GCGTGTCAAATATAACGTTGAGAGA 59.712 40.000 11.99 0.00 38.28 3.10
630 653 5.288712 AGCGTGTCAAATATAACGTTGAGAG 59.711 40.000 11.99 0.00 38.28 3.20
631 654 5.061684 CAGCGTGTCAAATATAACGTTGAGA 59.938 40.000 11.99 0.00 46.08 3.27
632 655 5.248087 CAGCGTGTCAAATATAACGTTGAG 58.752 41.667 11.99 0.00 46.08 3.02
633 656 4.092237 CCAGCGTGTCAAATATAACGTTGA 59.908 41.667 11.99 0.00 46.08 3.18
634 657 4.142988 ACCAGCGTGTCAAATATAACGTTG 60.143 41.667 11.99 4.27 43.85 4.10
635 658 3.998341 ACCAGCGTGTCAAATATAACGTT 59.002 39.130 5.88 5.88 38.28 3.99
636 659 3.592059 ACCAGCGTGTCAAATATAACGT 58.408 40.909 0.00 0.00 38.28 3.99
637 660 5.705813 TTACCAGCGTGTCAAATATAACG 57.294 39.130 0.00 0.00 39.00 3.18
638 661 7.241663 TCATTACCAGCGTGTCAAATATAAC 57.758 36.000 0.00 0.00 0.00 1.89
639 662 7.201661 GGTTCATTACCAGCGTGTCAAATATAA 60.202 37.037 0.00 0.00 46.92 0.98
640 663 6.259167 GGTTCATTACCAGCGTGTCAAATATA 59.741 38.462 0.00 0.00 46.92 0.86
641 664 5.065988 GGTTCATTACCAGCGTGTCAAATAT 59.934 40.000 0.00 0.00 46.92 1.28
642 665 4.393680 GGTTCATTACCAGCGTGTCAAATA 59.606 41.667 0.00 0.00 46.92 1.40
643 666 3.190535 GGTTCATTACCAGCGTGTCAAAT 59.809 43.478 0.00 0.00 46.92 2.32
644 667 2.550606 GGTTCATTACCAGCGTGTCAAA 59.449 45.455 0.00 0.00 46.92 2.69
645 668 2.147958 GGTTCATTACCAGCGTGTCAA 58.852 47.619 0.00 0.00 46.92 3.18
646 669 1.803334 GGTTCATTACCAGCGTGTCA 58.197 50.000 0.00 0.00 46.92 3.58
656 679 8.263940 TGACTGCTAAACTTATGGTTCATTAC 57.736 34.615 0.00 0.00 37.12 1.89
657 680 8.856153 TTGACTGCTAAACTTATGGTTCATTA 57.144 30.769 0.00 0.00 37.12 1.90
658 681 7.665559 TCTTGACTGCTAAACTTATGGTTCATT 59.334 33.333 0.00 0.00 37.12 2.57
659 682 7.168219 TCTTGACTGCTAAACTTATGGTTCAT 58.832 34.615 0.00 0.00 37.12 2.57
660 683 6.530120 TCTTGACTGCTAAACTTATGGTTCA 58.470 36.000 0.00 0.00 37.12 3.18
661 684 7.435068 TTCTTGACTGCTAAACTTATGGTTC 57.565 36.000 0.00 0.00 37.12 3.62
662 685 7.817418 TTTCTTGACTGCTAAACTTATGGTT 57.183 32.000 0.00 0.00 40.28 3.67
663 686 7.817418 TTTTCTTGACTGCTAAACTTATGGT 57.183 32.000 0.00 0.00 0.00 3.55
664 687 9.774742 GTATTTTCTTGACTGCTAAACTTATGG 57.225 33.333 0.00 0.00 0.00 2.74
674 697 9.013229 TGTGAATATTGTATTTTCTTGACTGCT 57.987 29.630 0.00 0.00 0.00 4.24
675 698 9.624697 TTGTGAATATTGTATTTTCTTGACTGC 57.375 29.630 0.00 0.00 0.00 4.40
678 701 9.906660 TGGTTGTGAATATTGTATTTTCTTGAC 57.093 29.630 0.00 0.00 0.00 3.18
717 740 8.840321 GCTCCAAGTAAATGCTAAGATGAAATA 58.160 33.333 0.00 0.00 0.00 1.40
718 741 7.559170 AGCTCCAAGTAAATGCTAAGATGAAAT 59.441 33.333 0.00 0.00 31.71 2.17
719 742 6.886459 AGCTCCAAGTAAATGCTAAGATGAAA 59.114 34.615 0.00 0.00 31.71 2.69
720 743 6.418101 AGCTCCAAGTAAATGCTAAGATGAA 58.582 36.000 0.00 0.00 31.71 2.57
721 744 5.994250 AGCTCCAAGTAAATGCTAAGATGA 58.006 37.500 0.00 0.00 31.71 2.92
725 748 6.500684 TGAAAGCTCCAAGTAAATGCTAAG 57.499 37.500 0.00 0.00 33.28 2.18
814 837 6.321181 TCCAATCTGGTTATTACTTGGAATGC 59.679 38.462 1.94 0.00 39.22 3.56
942 1007 1.069823 ACCGGCTGCTTATGAGAGATG 59.930 52.381 0.00 0.00 0.00 2.90
951 1016 1.220749 GATGTGGACCGGCTGCTTA 59.779 57.895 0.00 0.00 0.00 3.09
1025 1795 5.245301 CCATTAGCCATTGTGGATGATTGAT 59.755 40.000 0.00 0.00 40.96 2.57
1039 1809 1.893137 TCGCTCGTATCCATTAGCCAT 59.107 47.619 0.00 0.00 0.00 4.40
1042 1812 1.341606 GCTCGCTCGTATCCATTAGC 58.658 55.000 0.00 0.00 0.00 3.09
1122 1918 2.195741 ATGGGCTGATGGAATGATCG 57.804 50.000 0.00 0.00 0.00 3.69
1527 3556 3.378427 GGCCGAACTTTATTCAGAAGCAT 59.622 43.478 0.00 0.00 0.00 3.79
1542 3613 2.981400 TTGAGAAATTTCGGCCGAAC 57.019 45.000 38.87 26.70 33.41 3.95
2081 4168 2.028930 CGAGTAGTTCCTGCTCTTGGTT 60.029 50.000 7.57 0.00 40.25 3.67
2447 4537 5.335976 CCGTTGAATCTCTCGGATGATGATA 60.336 44.000 0.00 0.00 44.86 2.15
2481 4571 5.931146 GCTGTCCAGGTGAATGAGATAATAG 59.069 44.000 0.00 0.00 0.00 1.73
2546 4674 3.181476 GGACAAACAAGCAACTGGACAAT 60.181 43.478 0.00 0.00 0.00 2.71
2598 4726 5.778862 TCAATAGAAAAAGAAAAAGGCCCG 58.221 37.500 0.00 0.00 0.00 6.13
2626 4762 4.957759 AATATAAAACAGGTGACGGCAC 57.042 40.909 14.74 14.74 44.39 5.01
2635 4771 5.461078 CACGACGACCCTAATATAAAACAGG 59.539 44.000 0.00 0.00 0.00 4.00
2646 4782 3.389925 AATCAAACACGACGACCCTAA 57.610 42.857 0.00 0.00 0.00 2.69
2670 4806 4.703897 ACGAAGAAAGACCATCAAACTGA 58.296 39.130 0.00 0.00 0.00 3.41
2674 4810 5.215252 AGAGACGAAGAAAGACCATCAAA 57.785 39.130 0.00 0.00 0.00 2.69
2675 4811 4.873746 AGAGACGAAGAAAGACCATCAA 57.126 40.909 0.00 0.00 0.00 2.57
2795 7213 7.924103 AAACAATACAAAAAGGATCACGTTC 57.076 32.000 0.00 0.00 0.00 3.95
2796 7214 9.974980 ATTAAACAATACAAAAAGGATCACGTT 57.025 25.926 0.00 0.00 0.00 3.99
2797 7215 9.974980 AATTAAACAATACAAAAAGGATCACGT 57.025 25.926 0.00 0.00 0.00 4.49
2812 7230 9.930693 GGGTACAAATGTCCAAATTAAACAATA 57.069 29.630 0.00 0.00 0.00 1.90
2986 7436 4.318475 CGTGAACGAAGCATAGTTGAAACA 60.318 41.667 0.00 0.00 43.02 2.83
3036 7486 4.560919 GCGAACCCGTCTTTATAGGATCAT 60.561 45.833 0.00 0.00 38.24 2.45
3066 7516 0.317854 GCCGCACCTCTTGAAAACAC 60.318 55.000 0.00 0.00 0.00 3.32
3084 7534 7.061789 CGATCCACCTTAAAAACATAAAGTTGC 59.938 37.037 0.00 0.00 41.19 4.17
3138 8171 2.627699 GACCCCTCTTGAAAACATGCAA 59.372 45.455 0.00 0.00 0.00 4.08
3154 8187 1.812571 CATGCAGTTAGTTGTGACCCC 59.187 52.381 0.00 0.00 0.00 4.95
3210 8243 1.912001 AAACATGCAATTGCGATCCG 58.088 45.000 24.58 13.16 45.83 4.18
3220 8253 4.215399 CGACCTCTCCTTAAAAACATGCAA 59.785 41.667 0.00 0.00 0.00 4.08
3236 8269 0.671781 GACATGCAGTTGCGACCTCT 60.672 55.000 0.00 0.00 45.83 3.69
3276 8309 4.683781 TGCGACCTTTCATTAAAAACATGC 59.316 37.500 0.00 0.00 0.00 4.06
3285 8318 2.499197 TGCAGTTGCGACCTTTCATTA 58.501 42.857 0.00 0.00 45.83 1.90
3288 8321 0.592637 CATGCAGTTGCGACCTTTCA 59.407 50.000 0.00 0.00 45.83 2.69
3289 8322 0.593128 ACATGCAGTTGCGACCTTTC 59.407 50.000 0.00 0.00 45.83 2.62
3290 8348 1.032014 AACATGCAGTTGCGACCTTT 58.968 45.000 0.00 0.00 45.83 3.11
3291 8349 1.032014 AAACATGCAGTTGCGACCTT 58.968 45.000 0.00 0.00 45.83 3.50
3309 8367 5.669164 ACAGTTGCAACCCTTCTTAAAAA 57.331 34.783 25.62 0.00 0.00 1.94
3313 8371 5.043737 ACTTACAGTTGCAACCCTTCTTA 57.956 39.130 25.62 5.74 0.00 2.10
3318 8376 6.532988 TTTAAAACTTACAGTTGCAACCCT 57.467 33.333 25.62 13.36 38.66 4.34
3323 8381 6.127026 ACCCCATTTTAAAACTTACAGTTGCA 60.127 34.615 1.97 0.00 38.66 4.08
3365 8450 2.680913 ATGCAGTTGCGACGCCTTC 61.681 57.895 18.69 7.61 45.83 3.46
3370 8455 0.316937 AAACACATGCAGTTGCGACG 60.317 50.000 5.05 0.00 45.83 5.12
3378 8463 1.001181 CCCCCTTGAAAACACATGCAG 59.999 52.381 0.00 0.00 0.00 4.41
3417 8502 0.538118 TAACATGTAGTCGTGCCCCC 59.462 55.000 0.00 0.00 34.22 5.40
3418 8503 2.102588 AGATAACATGTAGTCGTGCCCC 59.897 50.000 0.00 0.00 34.22 5.80
3419 8504 3.454371 AGATAACATGTAGTCGTGCCC 57.546 47.619 0.00 0.00 34.22 5.36
3420 8505 4.037684 ACCTAGATAACATGTAGTCGTGCC 59.962 45.833 0.00 0.00 34.22 5.01
3421 8506 5.184340 ACCTAGATAACATGTAGTCGTGC 57.816 43.478 0.00 0.00 34.22 5.34
3422 8507 9.395707 GATAAACCTAGATAACATGTAGTCGTG 57.604 37.037 0.00 0.00 36.71 4.35
3423 8508 8.288208 CGATAAACCTAGATAACATGTAGTCGT 58.712 37.037 0.00 0.00 0.00 4.34
3424 8509 7.270793 GCGATAAACCTAGATAACATGTAGTCG 59.729 40.741 0.00 0.00 0.00 4.18
3425 8510 8.080417 TGCGATAAACCTAGATAACATGTAGTC 58.920 37.037 0.00 0.00 0.00 2.59
3426 8511 7.948357 TGCGATAAACCTAGATAACATGTAGT 58.052 34.615 0.00 0.00 0.00 2.73
3427 8512 8.700644 GTTGCGATAAACCTAGATAACATGTAG 58.299 37.037 0.00 0.00 0.00 2.74
3428 8513 8.418662 AGTTGCGATAAACCTAGATAACATGTA 58.581 33.333 0.00 0.00 0.00 2.29
3429 8514 7.224753 CAGTTGCGATAAACCTAGATAACATGT 59.775 37.037 0.00 0.00 0.00 3.21
3430 8515 7.567571 CAGTTGCGATAAACCTAGATAACATG 58.432 38.462 0.00 0.00 0.00 3.21
3431 8516 6.202954 GCAGTTGCGATAAACCTAGATAACAT 59.797 38.462 0.00 0.00 0.00 2.71
3432 8517 5.522460 GCAGTTGCGATAAACCTAGATAACA 59.478 40.000 0.00 0.00 0.00 2.41
3433 8518 5.522460 TGCAGTTGCGATAAACCTAGATAAC 59.478 40.000 0.00 0.00 45.83 1.89
3434 8519 5.666462 TGCAGTTGCGATAAACCTAGATAA 58.334 37.500 0.00 0.00 45.83 1.75
3435 8520 5.270893 TGCAGTTGCGATAAACCTAGATA 57.729 39.130 0.00 0.00 45.83 1.98
3436 8521 4.137116 TGCAGTTGCGATAAACCTAGAT 57.863 40.909 0.00 0.00 45.83 1.98
3437 8522 3.603158 TGCAGTTGCGATAAACCTAGA 57.397 42.857 0.00 0.00 45.83 2.43
3438 8523 4.403453 GTTTGCAGTTGCGATAAACCTAG 58.597 43.478 7.09 0.00 45.83 3.02
3439 8524 3.189702 GGTTTGCAGTTGCGATAAACCTA 59.810 43.478 21.16 0.00 44.48 3.08
3440 8525 2.030274 GGTTTGCAGTTGCGATAAACCT 60.030 45.455 21.16 0.00 44.48 3.50
3441 8526 2.324860 GGTTTGCAGTTGCGATAAACC 58.675 47.619 16.73 16.73 42.93 3.27
3442 8527 2.324860 GGGTTTGCAGTTGCGATAAAC 58.675 47.619 8.99 8.99 45.83 2.01
3443 8528 1.271102 GGGGTTTGCAGTTGCGATAAA 59.729 47.619 0.00 0.00 45.83 1.40
3444 8529 0.885196 GGGGTTTGCAGTTGCGATAA 59.115 50.000 0.00 0.00 45.83 1.75
3445 8530 0.250945 TGGGGTTTGCAGTTGCGATA 60.251 50.000 0.00 0.00 45.83 2.92
3446 8531 1.112315 TTGGGGTTTGCAGTTGCGAT 61.112 50.000 0.00 0.00 45.83 4.58
3447 8532 1.112315 ATTGGGGTTTGCAGTTGCGA 61.112 50.000 0.00 0.00 45.83 5.10
3448 8533 0.945265 CATTGGGGTTTGCAGTTGCG 60.945 55.000 0.00 0.00 45.83 4.85
3449 8534 0.603439 CCATTGGGGTTTGCAGTTGC 60.603 55.000 0.00 0.00 42.50 4.17
3450 8535 3.610637 CCATTGGGGTTTGCAGTTG 57.389 52.632 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.