Multiple sequence alignment - TraesCS3D01G097700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G097700 chr3D 100.000 6025 0 0 1 6025 49641288 49647312 0.000000e+00 11127
1 TraesCS3D01G097700 chr3D 95.181 166 2 2 4505 4664 170235969 170236134 2.150000e-64 257
2 TraesCS3D01G097700 chr3D 94.675 169 2 3 4502 4663 489166299 489166131 7.750000e-64 255
3 TraesCS3D01G097700 chr3D 90.452 199 11 4 4498 4688 598206708 598206510 7.750000e-64 255
4 TraesCS3D01G097700 chr3A 91.271 3964 207 69 571 4477 63071622 63075503 0.000000e+00 5275
5 TraesCS3D01G097700 chr3A 95.112 1289 35 8 4706 5974 63075549 63076829 0.000000e+00 2006
6 TraesCS3D01G097700 chr3A 92.174 345 14 6 1 334 63068802 63069144 5.460000e-130 475
7 TraesCS3D01G097700 chr3A 91.277 321 23 5 323 639 63071346 63071665 3.340000e-117 433
8 TraesCS3D01G097700 chr3B 96.494 1626 56 1 2343 3967 79125912 79127537 0.000000e+00 2686
9 TraesCS3D01G097700 chr3B 92.352 1569 90 20 759 2304 79124351 79125912 0.000000e+00 2206
10 TraesCS3D01G097700 chr3B 90.396 1312 70 26 4692 5978 79127984 79129264 0.000000e+00 1674
11 TraesCS3D01G097700 chr3B 91.200 500 23 6 1 493 79123399 79123884 0.000000e+00 660
12 TraesCS3D01G097700 chr3B 95.320 406 15 4 4091 4496 79127554 79127955 5.090000e-180 641
13 TraesCS3D01G097700 chr3B 94.395 339 19 0 2051 2389 588910085 588910423 6.920000e-144 521
14 TraesCS3D01G097700 chr3B 84.228 298 36 6 1600 1896 764812976 764812689 4.600000e-71 279
15 TraesCS3D01G097700 chr1A 86.973 522 52 10 1200 1716 276123674 276123164 1.880000e-159 573
16 TraesCS3D01G097700 chr7B 94.985 339 17 0 2051 2389 651561702 651562040 3.200000e-147 532
17 TraesCS3D01G097700 chr7B 94.690 339 18 0 2051 2389 651736714 651737052 1.490000e-145 527
18 TraesCS3D01G097700 chr6B 93.043 345 24 0 2051 2395 608038625 608038969 6.970000e-139 505
19 TraesCS3D01G097700 chr2A 93.548 248 16 0 2142 2389 500244699 500244946 2.650000e-98 370
20 TraesCS3D01G097700 chr2A 78.470 562 77 29 1753 2312 480338847 480338328 1.620000e-85 327
21 TraesCS3D01G097700 chr5B 89.691 291 23 4 1427 1716 664217274 664216990 1.230000e-96 364
22 TraesCS3D01G097700 chr5B 86.996 223 23 3 1200 1422 664222703 664222487 4.660000e-61 246
23 TraesCS3D01G097700 chr2D 81.818 429 72 6 1737 2161 360549536 360549110 7.430000e-94 355
24 TraesCS3D01G097700 chrUn 86.054 294 30 5 1600 1892 46184763 46184480 7.590000e-79 305
25 TraesCS3D01G097700 chr4B 84.407 295 35 5 1600 1893 60056911 60057195 4.600000e-71 279
26 TraesCS3D01G097700 chr4B 93.023 86 6 0 2304 2389 667283416 667283501 6.340000e-25 126
27 TraesCS3D01G097700 chr5D 95.181 166 2 2 4504 4663 56451748 56451583 2.150000e-64 257
28 TraesCS3D01G097700 chr6D 94.643 168 3 2 4503 4664 413401451 413401284 7.750000e-64 255
29 TraesCS3D01G097700 chr6D 94.643 168 3 2 4503 4664 413967761 413967928 7.750000e-64 255
30 TraesCS3D01G097700 chr6D 91.534 189 8 4 4505 4685 85165856 85165668 2.790000e-63 254
31 TraesCS3D01G097700 chr4D 94.152 171 4 2 4505 4669 10770526 10770696 7.750000e-64 255
32 TraesCS3D01G097700 chr4D 92.818 181 5 3 4503 4677 509649268 509649090 7.750000e-64 255


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G097700 chr3D 49641288 49647312 6024 False 11127.00 11127 100.0000 1 6025 1 chr3D.!!$F1 6024
1 TraesCS3D01G097700 chr3A 63068802 63076829 8027 False 2047.25 5275 92.4585 1 5974 4 chr3A.!!$F1 5973
2 TraesCS3D01G097700 chr3B 79123399 79129264 5865 False 1573.40 2686 93.1524 1 5978 5 chr3B.!!$F2 5977
3 TraesCS3D01G097700 chr1A 276123164 276123674 510 True 573.00 573 86.9730 1200 1716 1 chr1A.!!$R1 516
4 TraesCS3D01G097700 chr2A 480338328 480338847 519 True 327.00 327 78.4700 1753 2312 1 chr2A.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 3342 0.512518 GTACGGTACCACGGCAAAAC 59.487 55.000 13.54 0.00 38.39 2.43 F
1269 3854 0.674534 AGGTTATCCACTCGCGATCC 59.325 55.000 10.36 2.66 35.89 3.36 F
1696 4306 1.152383 GGAACGAGTTCTATGCCGGC 61.152 60.000 22.73 22.73 39.45 6.13 F
1841 4456 1.293924 CAGATTTCTCGCCATTCGCT 58.706 50.000 0.00 0.00 38.27 4.93 F
2611 5246 1.403814 TCCCATCTAGTTCAGCCGAG 58.596 55.000 0.00 0.00 0.00 4.63 F
3818 6474 1.812922 CTGCAGCTACCTCAAGGCG 60.813 63.158 0.00 0.00 39.32 5.52 F
4343 6999 1.457346 CAACATCCTGCCTTCAGACC 58.543 55.000 0.00 0.00 42.95 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1718 4331 0.395686 ACGGCAGCATATCAGCAGAT 59.604 50.000 0.00 0.00 38.29 2.90 R
2629 5264 0.697658 TCCCATTCATCTGTGGCACA 59.302 50.000 20.76 20.76 34.08 4.57 R
3493 6145 2.037136 CAAGGAGAGCCTGCCAACG 61.037 63.158 0.00 0.00 46.28 4.10 R
3722 6378 3.430453 TCCCAATAAAGGCAAGGAGTTG 58.570 45.455 0.00 0.00 36.67 3.16 R
4324 6980 1.004044 AGGTCTGAAGGCAGGATGTTG 59.996 52.381 0.00 0.00 42.53 3.33 R
4685 7341 0.244450 CTCGCCATGCAAACCAACAT 59.756 50.000 0.00 0.00 0.00 2.71 R
5984 8666 1.332065 TGACGATTTTGACGCTTTGCA 59.668 42.857 0.00 0.00 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 110 1.345422 TGGGCAGGGGATCTCTTGTAT 60.345 52.381 6.57 0.00 0.00 2.29
114 115 5.458215 GGGCAGGGGATCTCTTGTATTATTT 60.458 44.000 6.57 0.00 0.00 1.40
179 189 4.384846 CGCAAGACTCAACACGTAGTTTAT 59.615 41.667 0.00 0.00 38.61 1.40
210 220 1.948104 TGTACAAGTGTCCACTGCAC 58.052 50.000 0.00 0.82 41.58 4.57
239 249 2.620585 GGTGAGCTTTTGAGCTTTCAGT 59.379 45.455 2.06 0.00 46.36 3.41
268 280 8.768019 TGTGATATAAGATGCATTTTTCTCTCG 58.232 33.333 7.89 0.00 0.00 4.04
334 346 5.098211 GGCTAGTCATTGTTGAAGAAATGC 58.902 41.667 0.00 0.00 34.44 3.56
401 2626 5.104374 GCCAATTTTGTTCGATCATGATGT 58.896 37.500 14.30 0.00 0.00 3.06
580 3123 6.018262 TCTCTCACAAAACCGAAATGTTAGTG 60.018 38.462 0.00 0.00 36.50 2.74
622 3197 9.914923 CAAAATGTTAGGTTTTCTTTTTAGTGC 57.085 29.630 0.00 0.00 0.00 4.40
627 3202 9.181061 TGTTAGGTTTTCTTTTTAGTGCTAACT 57.819 29.630 0.00 0.00 40.67 2.24
737 3314 3.120796 TGATGCAGGCCCATCAATC 57.879 52.632 18.98 8.05 46.18 2.67
738 3315 0.820482 TGATGCAGGCCCATCAATCG 60.820 55.000 18.98 0.00 46.18 3.34
739 3316 2.138656 GATGCAGGCCCATCAATCGC 62.139 60.000 15.00 0.17 40.96 4.58
740 3317 2.517875 GCAGGCCCATCAATCGCT 60.518 61.111 0.00 0.00 0.00 4.93
741 3318 2.550101 GCAGGCCCATCAATCGCTC 61.550 63.158 0.00 0.00 0.00 5.03
742 3319 2.109799 AGGCCCATCAATCGCTCG 59.890 61.111 0.00 0.00 0.00 5.03
743 3320 3.654020 GGCCCATCAATCGCTCGC 61.654 66.667 0.00 0.00 0.00 5.03
744 3321 2.590007 GCCCATCAATCGCTCGCT 60.590 61.111 0.00 0.00 0.00 4.93
745 3322 2.182842 GCCCATCAATCGCTCGCTT 61.183 57.895 0.00 0.00 0.00 4.68
746 3323 1.645455 CCCATCAATCGCTCGCTTG 59.355 57.895 0.02 0.02 0.00 4.01
747 3324 1.091771 CCCATCAATCGCTCGCTTGT 61.092 55.000 5.88 0.00 0.00 3.16
748 3325 1.570813 CCATCAATCGCTCGCTTGTA 58.429 50.000 5.88 0.00 0.00 2.41
749 3326 1.258982 CCATCAATCGCTCGCTTGTAC 59.741 52.381 5.88 0.00 0.00 2.90
750 3327 1.071894 CATCAATCGCTCGCTTGTACG 60.072 52.381 5.88 0.00 0.00 3.67
765 3342 0.512518 GTACGGTACCACGGCAAAAC 59.487 55.000 13.54 0.00 38.39 2.43
775 3352 2.203625 GGCAAAACTGGGCCTGGA 60.204 61.111 15.36 0.00 46.74 3.86
920 3498 2.751436 CACCACCTCCCGCCATTG 60.751 66.667 0.00 0.00 0.00 2.82
921 3499 4.740822 ACCACCTCCCGCCATTGC 62.741 66.667 0.00 0.00 0.00 3.56
922 3500 4.431131 CCACCTCCCGCCATTGCT 62.431 66.667 0.00 0.00 34.43 3.91
923 3501 2.825836 CACCTCCCGCCATTGCTC 60.826 66.667 0.00 0.00 34.43 4.26
924 3502 4.115199 ACCTCCCGCCATTGCTCC 62.115 66.667 0.00 0.00 34.43 4.70
925 3503 3.801997 CCTCCCGCCATTGCTCCT 61.802 66.667 0.00 0.00 34.43 3.69
926 3504 2.515523 CTCCCGCCATTGCTCCTG 60.516 66.667 0.00 0.00 34.43 3.86
927 3505 4.802051 TCCCGCCATTGCTCCTGC 62.802 66.667 0.00 0.00 40.20 4.85
941 3526 2.284921 CTGCCTCCTGGTCTCCCA 60.285 66.667 0.00 0.00 38.87 4.37
942 3527 2.607750 TGCCTCCTGGTCTCCCAC 60.608 66.667 0.00 0.00 35.17 4.61
1005 3590 2.238395 GAGAAAGGCAGAGAGGATGGTT 59.762 50.000 0.00 0.00 0.00 3.67
1197 3782 2.588034 GTATCAACCCCTCGCCGC 60.588 66.667 0.00 0.00 0.00 6.53
1269 3854 0.674534 AGGTTATCCACTCGCGATCC 59.325 55.000 10.36 2.66 35.89 3.36
1312 3898 2.401583 TGCGTCAGGCTATCATGTTT 57.598 45.000 0.00 0.00 44.05 2.83
1313 3899 2.009051 TGCGTCAGGCTATCATGTTTG 58.991 47.619 0.00 0.00 44.05 2.93
1316 3902 3.728864 GCGTCAGGCTATCATGTTTGTTG 60.729 47.826 0.00 0.00 39.11 3.33
1414 4004 8.585018 ACTGTAAAAGGGGAAAAATGATTAGTG 58.415 33.333 0.00 0.00 0.00 2.74
1417 4007 6.605471 AAAGGGGAAAAATGATTAGTGTCC 57.395 37.500 0.00 0.00 0.00 4.02
1425 4019 8.925700 GGAAAAATGATTAGTGTCCAAATGAAC 58.074 33.333 0.00 0.00 0.00 3.18
1429 4023 7.621428 ATGATTAGTGTCCAAATGAACAGAG 57.379 36.000 0.00 0.00 0.00 3.35
1432 4028 2.711009 AGTGTCCAAATGAACAGAGGGA 59.289 45.455 0.00 0.00 0.00 4.20
1437 4033 4.827284 GTCCAAATGAACAGAGGGAAGAAA 59.173 41.667 0.00 0.00 0.00 2.52
1473 4077 1.301423 TGCGTTACGGATTTATGGCC 58.699 50.000 6.94 0.00 0.00 5.36
1498 4102 6.814644 CGGGGAAAAGGGATTTATTTTTGTAC 59.185 38.462 0.00 0.00 0.00 2.90
1499 4103 7.310175 CGGGGAAAAGGGATTTATTTTTGTACT 60.310 37.037 0.00 0.00 0.00 2.73
1500 4104 7.822334 GGGGAAAAGGGATTTATTTTTGTACTG 59.178 37.037 0.00 0.00 0.00 2.74
1501 4105 8.372459 GGGAAAAGGGATTTATTTTTGTACTGT 58.628 33.333 0.00 0.00 0.00 3.55
1502 4106 9.203421 GGAAAAGGGATTTATTTTTGTACTGTG 57.797 33.333 0.00 0.00 0.00 3.66
1503 4107 9.758651 GAAAAGGGATTTATTTTTGTACTGTGT 57.241 29.630 0.00 0.00 0.00 3.72
1504 4108 9.541143 AAAAGGGATTTATTTTTGTACTGTGTG 57.459 29.630 0.00 0.00 0.00 3.82
1507 4111 9.528489 AGGGATTTATTTTTGTACTGTGTGTAT 57.472 29.630 0.00 0.00 33.23 2.29
1696 4306 1.152383 GGAACGAGTTCTATGCCGGC 61.152 60.000 22.73 22.73 39.45 6.13
1713 4326 1.519408 GGCGCTTTCAAGGTACTGAA 58.481 50.000 7.64 0.00 40.86 3.02
1716 4329 3.687698 GGCGCTTTCAAGGTACTGAAATA 59.312 43.478 7.64 0.00 40.86 1.40
1718 4331 5.335348 GGCGCTTTCAAGGTACTGAAATAAA 60.335 40.000 7.64 0.00 40.86 1.40
1820 4435 1.489230 ACCTGGAGGACGAACAAGTTT 59.511 47.619 0.00 0.00 38.94 2.66
1841 4456 1.293924 CAGATTTCTCGCCATTCGCT 58.706 50.000 0.00 0.00 38.27 4.93
1847 4462 1.595109 CTCGCCATTCGCTATGCCA 60.595 57.895 0.00 0.00 38.27 4.92
1910 4525 1.409790 TGCGTGCCGGTATGTTACTAT 59.590 47.619 13.63 0.00 0.00 2.12
1950 4571 7.723616 TGTTTCCCATTTTCTGATCAGTTCTAA 59.276 33.333 21.92 12.01 0.00 2.10
2000 4622 7.396540 GTGGAATTCACCTGAATAGTTTGAT 57.603 36.000 7.93 0.00 43.41 2.57
2041 4663 3.999663 CTGGACAGAATTCTTGGACACTC 59.000 47.826 4.86 0.00 0.00 3.51
2130 4752 2.978278 GGAAGAGGGATGGAGATGATGT 59.022 50.000 0.00 0.00 0.00 3.06
2170 4792 8.629158 AGCTCTTGTCATGTTTGTTACAATAAA 58.371 29.630 0.00 0.00 40.89 1.40
2312 4934 9.856162 AAGAACCAAACTTAGTTTTCTACCATA 57.144 29.630 7.71 0.00 33.10 2.74
2334 4968 7.094205 CCATATAGCTTTGTCATTTCCCCATAC 60.094 40.741 0.00 0.00 0.00 2.39
2336 4970 3.013921 GCTTTGTCATTTCCCCATACGA 58.986 45.455 0.00 0.00 0.00 3.43
2337 4971 3.442273 GCTTTGTCATTTCCCCATACGAA 59.558 43.478 0.00 0.00 0.00 3.85
2338 4972 4.082463 GCTTTGTCATTTCCCCATACGAAA 60.082 41.667 0.00 0.00 33.94 3.46
2339 4973 5.394115 GCTTTGTCATTTCCCCATACGAAAT 60.394 40.000 0.00 0.00 39.87 2.17
2360 4994 5.975988 ATGGTCCCATAATCTAGTGTGTT 57.024 39.130 0.00 0.00 34.49 3.32
2369 5003 7.148239 CCCATAATCTAGTGTGTTTCTGTTTCC 60.148 40.741 0.00 0.00 0.00 3.13
2370 5004 7.607991 CCATAATCTAGTGTGTTTCTGTTTCCT 59.392 37.037 0.00 0.00 0.00 3.36
2389 5023 5.489792 TCCTGTTTGAAGTTCATCTAGCT 57.510 39.130 6.36 0.00 0.00 3.32
2391 5025 5.934625 TCCTGTTTGAAGTTCATCTAGCTTC 59.065 40.000 6.36 0.00 43.64 3.86
2411 5045 6.484977 AGCTTCTGATAGCCTAAATTACTTGC 59.515 38.462 7.80 0.00 42.20 4.01
2521 5155 5.739752 TTTCATGCTAATCCGAAGTCATG 57.260 39.130 0.00 0.00 33.53 3.07
2541 5175 5.476599 TCATGTAGAATGAAGGGTTTGGTTG 59.523 40.000 0.00 0.00 0.00 3.77
2562 5197 4.797471 TGTCTGACATAAAGTGCATTTGC 58.203 39.130 6.36 0.00 42.50 3.68
2567 5202 6.985645 TCTGACATAAAGTGCATTTGCTTTTT 59.014 30.769 5.47 7.00 42.66 1.94
2608 5243 2.038295 CCAGATCCCATCTAGTTCAGCC 59.962 54.545 0.00 0.00 37.58 4.85
2611 5246 1.403814 TCCCATCTAGTTCAGCCGAG 58.596 55.000 0.00 0.00 0.00 4.63
2629 5264 2.163010 CGAGATGCCAGCAAGTGAAAAT 59.837 45.455 0.00 0.00 0.00 1.82
2674 5309 5.546887 TGATCATCATATTCCTGGAAGCTCT 59.453 40.000 15.34 0.25 0.00 4.09
2785 5421 6.770785 TGCAAGTCCTATTGTTACAGACTTTT 59.229 34.615 12.87 0.00 43.41 2.27
2823 5459 7.212976 TCTATGATATGCCTGAAAGTCAAGTC 58.787 38.462 0.00 0.00 0.00 3.01
3001 5637 2.488937 TGCTTGATTTCATGCGTGACAT 59.511 40.909 8.48 7.82 46.27 3.06
3177 5813 2.368548 ACCTTGAACTGAAAAATGGGCC 59.631 45.455 0.00 0.00 0.00 5.80
3400 6052 4.757594 TCACTGCACATTGCTTTCTTTTT 58.242 34.783 0.00 0.00 45.31 1.94
3700 6352 7.170828 GTCCTGTTCAGTTTCTTTTTGTTTGTT 59.829 33.333 0.00 0.00 0.00 2.83
3722 6378 9.585099 TTGTTCAATCAAATTCCATAAGTATGC 57.415 29.630 0.00 0.00 32.40 3.14
3818 6474 1.812922 CTGCAGCTACCTCAAGGCG 60.813 63.158 0.00 0.00 39.32 5.52
3886 6542 6.116126 GGCATCTAAAGGTGTTGAGAATACT 58.884 40.000 0.00 0.00 0.00 2.12
4011 6667 6.371278 ACAAGATTCTATGCTCATCCCATTT 58.629 36.000 0.00 0.00 0.00 2.32
4041 6697 6.149474 GGTGTGTAAGTCTTTTGTCAGCATAT 59.851 38.462 0.00 0.00 0.00 1.78
4042 6698 7.017645 GTGTGTAAGTCTTTTGTCAGCATATG 58.982 38.462 0.00 0.00 0.00 1.78
4044 6700 7.875554 TGTGTAAGTCTTTTGTCAGCATATGTA 59.124 33.333 4.29 0.00 0.00 2.29
4068 6724 9.391006 GTATCAGTATCAACCATTTTAGGTCAA 57.609 33.333 0.00 0.00 42.25 3.18
4085 6741 5.431765 AGGTCAATGACTACATGATCCAAC 58.568 41.667 13.53 0.00 36.79 3.77
4104 6760 7.769272 TCCAACAGTGAATGAAAATTTGAAC 57.231 32.000 0.00 0.00 0.00 3.18
4160 6816 4.201812 TGCGCACATCTAAAGTGAATTAGC 60.202 41.667 5.66 0.00 39.30 3.09
4190 6846 5.426689 TGATACTTCAAGCATGAACCTCT 57.573 39.130 0.00 0.00 40.59 3.69
4312 6968 3.926616 TGTGCAGCTACTTACTCTTTCC 58.073 45.455 0.00 0.00 0.00 3.13
4343 6999 1.457346 CAACATCCTGCCTTCAGACC 58.543 55.000 0.00 0.00 42.95 3.85
4479 7135 5.080969 CCTGAGATTTACCAGGTAACGAA 57.919 43.478 11.97 0.00 43.71 3.85
4480 7136 4.868734 CCTGAGATTTACCAGGTAACGAAC 59.131 45.833 11.97 5.40 43.71 3.95
4482 7138 5.856156 TGAGATTTACCAGGTAACGAACAA 58.144 37.500 11.97 0.00 46.39 2.83
4490 7146 3.007635 CAGGTAACGAACAAATCCCTCC 58.992 50.000 0.00 0.00 46.39 4.30
4491 7147 2.910977 AGGTAACGAACAAATCCCTCCT 59.089 45.455 0.00 0.00 46.39 3.69
4496 7152 2.308866 ACGAACAAATCCCTCCTTCCAT 59.691 45.455 0.00 0.00 0.00 3.41
4502 7158 7.284489 CGAACAAATCCCTCCTTCCATTTATTA 59.716 37.037 0.00 0.00 0.00 0.98
4503 7159 9.147732 GAACAAATCCCTCCTTCCATTTATTAT 57.852 33.333 0.00 0.00 0.00 1.28
4504 7160 8.712228 ACAAATCCCTCCTTCCATTTATTATC 57.288 34.615 0.00 0.00 0.00 1.75
4505 7161 8.514504 ACAAATCCCTCCTTCCATTTATTATCT 58.485 33.333 0.00 0.00 0.00 1.98
4508 7164 8.997301 ATCCCTCCTTCCATTTATTATCTACT 57.003 34.615 0.00 0.00 0.00 2.57
4509 7165 8.437274 TCCCTCCTTCCATTTATTATCTACTC 57.563 38.462 0.00 0.00 0.00 2.59
4510 7166 7.458170 TCCCTCCTTCCATTTATTATCTACTCC 59.542 40.741 0.00 0.00 0.00 3.85
4511 7167 7.311360 CCCTCCTTCCATTTATTATCTACTCCC 60.311 44.444 0.00 0.00 0.00 4.30
4512 7168 7.459444 CCTCCTTCCATTTATTATCTACTCCCT 59.541 40.741 0.00 0.00 0.00 4.20
4513 7169 8.437274 TCCTTCCATTTATTATCTACTCCCTC 57.563 38.462 0.00 0.00 0.00 4.30
4514 7170 7.458170 TCCTTCCATTTATTATCTACTCCCTCC 59.542 40.741 0.00 0.00 0.00 4.30
4515 7171 6.852420 TCCATTTATTATCTACTCCCTCCG 57.148 41.667 0.00 0.00 0.00 4.63
4516 7172 6.320518 TCCATTTATTATCTACTCCCTCCGT 58.679 40.000 0.00 0.00 0.00 4.69
4517 7173 6.785963 TCCATTTATTATCTACTCCCTCCGTT 59.214 38.462 0.00 0.00 0.00 4.44
4518 7174 7.039223 TCCATTTATTATCTACTCCCTCCGTTC 60.039 40.741 0.00 0.00 0.00 3.95
4519 7175 6.661304 TTTATTATCTACTCCCTCCGTTCC 57.339 41.667 0.00 0.00 0.00 3.62
4520 7176 3.967467 TTATCTACTCCCTCCGTTCCT 57.033 47.619 0.00 0.00 0.00 3.36
4521 7177 5.595814 ATTATCTACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
4522 7178 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
4523 7179 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4524 7180 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4525 7181 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4526 7182 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
4527 7183 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4528 7184 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
4529 7185 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
4530 7186 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
4531 7187 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
4532 7188 4.439968 CCTCCGTTCCTAAATACTTGTCC 58.560 47.826 0.00 0.00 0.00 4.02
4533 7189 4.110482 CTCCGTTCCTAAATACTTGTCCG 58.890 47.826 0.00 0.00 0.00 4.79
4534 7190 2.606272 CCGTTCCTAAATACTTGTCCGC 59.394 50.000 0.00 0.00 0.00 5.54
4535 7191 3.255725 CGTTCCTAAATACTTGTCCGCA 58.744 45.455 0.00 0.00 0.00 5.69
4536 7192 3.869246 CGTTCCTAAATACTTGTCCGCAT 59.131 43.478 0.00 0.00 0.00 4.73
4537 7193 4.331717 CGTTCCTAAATACTTGTCCGCATT 59.668 41.667 0.00 0.00 0.00 3.56
4538 7194 5.163794 CGTTCCTAAATACTTGTCCGCATTT 60.164 40.000 0.00 0.00 0.00 2.32
4539 7195 6.617879 GTTCCTAAATACTTGTCCGCATTTT 58.382 36.000 0.00 0.00 0.00 1.82
4540 7196 7.413219 CGTTCCTAAATACTTGTCCGCATTTTA 60.413 37.037 0.00 0.00 0.00 1.52
4541 7197 7.925043 TCCTAAATACTTGTCCGCATTTTAA 57.075 32.000 0.00 0.00 0.00 1.52
4542 7198 7.754625 TCCTAAATACTTGTCCGCATTTTAAC 58.245 34.615 0.00 0.00 0.00 2.01
4543 7199 7.390996 TCCTAAATACTTGTCCGCATTTTAACA 59.609 33.333 0.00 0.00 0.00 2.41
4544 7200 8.024285 CCTAAATACTTGTCCGCATTTTAACAA 58.976 33.333 0.00 0.00 0.00 2.83
4545 7201 9.400638 CTAAATACTTGTCCGCATTTTAACAAA 57.599 29.630 0.00 0.00 31.75 2.83
4546 7202 8.825667 AAATACTTGTCCGCATTTTAACAAAT 57.174 26.923 0.00 0.00 31.75 2.32
4571 7227 9.809096 ATGACTACATACAGAGTAAAATGAGTG 57.191 33.333 0.00 0.00 34.71 3.51
4572 7228 9.020731 TGACTACATACAGAGTAAAATGAGTGA 57.979 33.333 0.00 0.00 0.00 3.41
4573 7229 9.856488 GACTACATACAGAGTAAAATGAGTGAA 57.144 33.333 0.00 0.00 0.00 3.18
4580 7236 8.764524 ACAGAGTAAAATGAGTGAATCTACAC 57.235 34.615 0.00 0.00 40.60 2.90
4621 7277 8.763049 CATACATCCGTATGTGATAGTCATTT 57.237 34.615 3.56 0.00 46.70 2.32
4622 7278 8.650714 CATACATCCGTATGTGATAGTCATTTG 58.349 37.037 3.56 0.00 46.70 2.32
4623 7279 6.816136 ACATCCGTATGTGATAGTCATTTGA 58.184 36.000 0.00 0.00 44.79 2.69
4624 7280 7.272244 ACATCCGTATGTGATAGTCATTTGAA 58.728 34.615 0.00 0.00 44.79 2.69
4625 7281 7.768582 ACATCCGTATGTGATAGTCATTTGAAA 59.231 33.333 0.00 0.00 44.79 2.69
4626 7282 8.777413 CATCCGTATGTGATAGTCATTTGAAAT 58.223 33.333 0.00 0.00 0.00 2.17
4627 7283 8.141835 TCCGTATGTGATAGTCATTTGAAATG 57.858 34.615 11.54 11.54 0.00 2.32
4628 7284 6.852853 CCGTATGTGATAGTCATTTGAAATGC 59.147 38.462 12.86 8.33 0.00 3.56
4629 7285 6.852853 CGTATGTGATAGTCATTTGAAATGCC 59.147 38.462 12.86 1.61 0.00 4.40
4630 7286 7.254898 CGTATGTGATAGTCATTTGAAATGCCT 60.255 37.037 12.86 9.73 0.00 4.75
4631 7287 9.056005 GTATGTGATAGTCATTTGAAATGCCTA 57.944 33.333 10.59 10.59 0.00 3.93
4632 7288 7.558161 TGTGATAGTCATTTGAAATGCCTAG 57.442 36.000 13.20 0.00 0.00 3.02
4633 7289 7.337938 TGTGATAGTCATTTGAAATGCCTAGA 58.662 34.615 13.20 1.78 0.00 2.43
4634 7290 7.828717 TGTGATAGTCATTTGAAATGCCTAGAA 59.171 33.333 13.20 2.99 0.00 2.10
4635 7291 8.677300 GTGATAGTCATTTGAAATGCCTAGAAA 58.323 33.333 13.20 0.91 0.00 2.52
4636 7292 8.896744 TGATAGTCATTTGAAATGCCTAGAAAG 58.103 33.333 13.20 0.00 0.00 2.62
4637 7293 9.113838 GATAGTCATTTGAAATGCCTAGAAAGA 57.886 33.333 13.20 0.00 0.00 2.52
4638 7294 7.150783 AGTCATTTGAAATGCCTAGAAAGAC 57.849 36.000 12.86 3.23 0.00 3.01
4639 7295 6.716628 AGTCATTTGAAATGCCTAGAAAGACA 59.283 34.615 12.86 0.00 0.00 3.41
4640 7296 7.231317 AGTCATTTGAAATGCCTAGAAAGACAA 59.769 33.333 12.86 0.00 0.00 3.18
4641 7297 7.540055 GTCATTTGAAATGCCTAGAAAGACAAG 59.460 37.037 12.86 0.00 0.00 3.16
4642 7298 6.959639 TTTGAAATGCCTAGAAAGACAAGT 57.040 33.333 0.00 0.00 0.00 3.16
4643 7299 8.514594 CATTTGAAATGCCTAGAAAGACAAGTA 58.485 33.333 4.82 0.00 0.00 2.24
4644 7300 8.635765 TTTGAAATGCCTAGAAAGACAAGTAT 57.364 30.769 0.00 0.00 0.00 2.12
4645 7301 8.635765 TTGAAATGCCTAGAAAGACAAGTATT 57.364 30.769 0.00 0.00 0.00 1.89
4646 7302 8.635765 TGAAATGCCTAGAAAGACAAGTATTT 57.364 30.769 0.00 0.00 0.00 1.40
4647 7303 9.733556 TGAAATGCCTAGAAAGACAAGTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
4649 7305 8.738645 AATGCCTAGAAAGACAAGTATTTAGG 57.261 34.615 5.26 5.26 0.00 2.69
4650 7306 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
4651 7307 7.913789 TGCCTAGAAAGACAAGTATTTAGGAA 58.086 34.615 11.40 1.02 26.70 3.36
4652 7308 7.822822 TGCCTAGAAAGACAAGTATTTAGGAAC 59.177 37.037 11.40 0.00 26.70 3.62
4653 7309 7.010275 GCCTAGAAAGACAAGTATTTAGGAACG 59.990 40.741 11.40 0.00 26.70 3.95
4654 7310 7.491696 CCTAGAAAGACAAGTATTTAGGAACGG 59.508 40.741 4.01 0.00 26.70 4.44
4655 7311 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
4656 7312 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
4657 7313 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
4658 7314 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
4659 7315 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4660 7316 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4676 7332 4.502950 GGAGGGAGTAGCAGATTCAGAATG 60.503 50.000 0.00 0.00 37.54 2.67
4684 7340 7.337167 AGTAGCAGATTCAGAATGTTCAGATT 58.663 34.615 0.00 0.00 37.40 2.40
4685 7341 8.481314 AGTAGCAGATTCAGAATGTTCAGATTA 58.519 33.333 0.00 0.00 37.40 1.75
4687 7343 8.155821 AGCAGATTCAGAATGTTCAGATTATG 57.844 34.615 0.00 0.00 37.40 1.90
4688 7344 7.774157 AGCAGATTCAGAATGTTCAGATTATGT 59.226 33.333 0.00 0.00 37.40 2.29
4689 7345 8.404000 GCAGATTCAGAATGTTCAGATTATGTT 58.596 33.333 0.00 0.00 37.40 2.71
4691 7347 8.900781 AGATTCAGAATGTTCAGATTATGTTGG 58.099 33.333 0.00 0.00 37.40 3.77
4692 7348 8.585471 ATTCAGAATGTTCAGATTATGTTGGT 57.415 30.769 0.00 0.00 37.40 3.67
4693 7349 8.408043 TTCAGAATGTTCAGATTATGTTGGTT 57.592 30.769 0.00 0.00 37.40 3.67
4694 7350 8.408043 TCAGAATGTTCAGATTATGTTGGTTT 57.592 30.769 0.00 0.00 37.40 3.27
4695 7351 8.298854 TCAGAATGTTCAGATTATGTTGGTTTG 58.701 33.333 0.00 0.00 37.40 2.93
4696 7352 7.062605 CAGAATGTTCAGATTATGTTGGTTTGC 59.937 37.037 0.00 0.00 0.00 3.68
4697 7353 5.781210 TGTTCAGATTATGTTGGTTTGCA 57.219 34.783 0.00 0.00 0.00 4.08
4699 7355 6.157904 TGTTCAGATTATGTTGGTTTGCATG 58.842 36.000 0.00 0.00 0.00 4.06
4700 7356 5.327616 TCAGATTATGTTGGTTTGCATGG 57.672 39.130 0.00 0.00 0.00 3.66
4701 7357 3.866910 CAGATTATGTTGGTTTGCATGGC 59.133 43.478 0.00 0.00 0.00 4.40
4702 7358 2.360553 TTATGTTGGTTTGCATGGCG 57.639 45.000 0.00 0.00 0.00 5.69
4704 7360 0.244450 ATGTTGGTTTGCATGGCGAG 59.756 50.000 0.00 0.00 0.00 5.03
4730 7386 2.440539 ACCTGTACTGAGTTTGCTCG 57.559 50.000 0.60 0.00 44.48 5.03
4862 7518 3.234368 GCGTTTGCGATAACATGGG 57.766 52.632 0.00 0.00 41.33 4.00
4889 7545 0.539986 GAACCTCCATCCGGCTAACA 59.460 55.000 0.00 0.00 0.00 2.41
4984 7640 2.827642 GGAGCACTGGCAGATGGC 60.828 66.667 23.66 20.22 44.61 4.40
5032 7688 1.596727 GAGGATGCAATGAGAAGACGC 59.403 52.381 0.00 0.00 0.00 5.19
5035 7691 1.002366 ATGCAATGAGAAGACGCGTC 58.998 50.000 31.30 31.30 0.00 5.19
5066 7722 4.256920 ACATGGATGTGTGAAACTCTAGC 58.743 43.478 0.00 0.00 40.03 3.42
5067 7723 4.019860 ACATGGATGTGTGAAACTCTAGCT 60.020 41.667 0.00 0.00 40.03 3.32
5100 7756 3.251729 GGCCTGCTGTGATGTGTATATTG 59.748 47.826 0.00 0.00 0.00 1.90
5104 7760 4.129380 TGCTGTGATGTGTATATTGCCTC 58.871 43.478 0.00 0.00 0.00 4.70
5122 7778 4.170251 TGCCTCCTACTAGGGTCTAAATCT 59.830 45.833 2.04 0.00 37.11 2.40
5141 7798 4.564782 TCTTCAAGACTTGGATCTGCAT 57.435 40.909 15.13 0.00 0.00 3.96
5268 7925 7.464358 CCTTGAATGGACAACTAAATCTAACG 58.536 38.462 0.00 0.00 0.00 3.18
5369 8027 6.128172 ACACTTTCAGTTTCTTCAGTTCACTG 60.128 38.462 0.02 0.02 45.08 3.66
5578 8256 6.389830 TGTGATGTAACTTTCACAATTGCT 57.610 33.333 5.05 0.00 46.75 3.91
5592 8270 1.964552 ATTGCTCAGTATGCTGCTCC 58.035 50.000 5.85 0.00 42.29 4.70
5597 8275 1.406898 CTCAGTATGCTGCTCCGAGAA 59.593 52.381 5.85 0.00 42.29 2.87
5771 8451 2.620585 GCTTCTTTGCCCCTGTATGATC 59.379 50.000 0.00 0.00 0.00 2.92
5955 8635 8.994429 TGAGAAAATAAAAACAAAAGCAGACA 57.006 26.923 0.00 0.00 0.00 3.41
5974 8656 3.793559 ACACGAGCAGAACAAAACTAGT 58.206 40.909 0.00 0.00 0.00 2.57
5978 8660 5.690409 CACGAGCAGAACAAAACTAGTTAGA 59.310 40.000 8.92 0.00 0.00 2.10
5979 8661 6.366332 CACGAGCAGAACAAAACTAGTTAGAT 59.634 38.462 8.92 0.00 0.00 1.98
5980 8662 7.541091 CACGAGCAGAACAAAACTAGTTAGATA 59.459 37.037 8.92 0.00 0.00 1.98
5981 8663 7.541437 ACGAGCAGAACAAAACTAGTTAGATAC 59.459 37.037 8.92 1.61 0.00 2.24
5982 8664 7.541091 CGAGCAGAACAAAACTAGTTAGATACA 59.459 37.037 8.92 0.00 0.00 2.29
5983 8665 9.372369 GAGCAGAACAAAACTAGTTAGATACAT 57.628 33.333 8.92 0.00 0.00 2.29
5984 8666 9.726438 AGCAGAACAAAACTAGTTAGATACATT 57.274 29.630 8.92 0.00 0.00 2.71
5985 8667 9.760660 GCAGAACAAAACTAGTTAGATACATTG 57.239 33.333 8.92 10.11 0.00 2.82
5986 8668 9.760660 CAGAACAAAACTAGTTAGATACATTGC 57.239 33.333 8.92 0.00 0.00 3.56
5987 8669 9.502091 AGAACAAAACTAGTTAGATACATTGCA 57.498 29.630 8.92 0.00 0.00 4.08
5991 8673 9.065871 CAAAACTAGTTAGATACATTGCAAAGC 57.934 33.333 8.92 0.00 0.00 3.51
5992 8674 6.589830 ACTAGTTAGATACATTGCAAAGCG 57.410 37.500 1.71 0.00 0.00 4.68
5993 8675 6.106673 ACTAGTTAGATACATTGCAAAGCGT 58.893 36.000 1.71 3.87 0.00 5.07
5994 8676 5.470845 AGTTAGATACATTGCAAAGCGTC 57.529 39.130 1.71 0.76 0.00 5.19
5995 8677 4.935205 AGTTAGATACATTGCAAAGCGTCA 59.065 37.500 1.71 0.00 0.00 4.35
5996 8678 5.411361 AGTTAGATACATTGCAAAGCGTCAA 59.589 36.000 1.71 0.00 0.00 3.18
5997 8679 4.764679 AGATACATTGCAAAGCGTCAAA 57.235 36.364 1.71 0.00 0.00 2.69
5998 8680 5.119931 AGATACATTGCAAAGCGTCAAAA 57.880 34.783 1.71 0.00 0.00 2.44
5999 8681 5.713025 AGATACATTGCAAAGCGTCAAAAT 58.287 33.333 1.71 0.00 0.00 1.82
6000 8682 5.801947 AGATACATTGCAAAGCGTCAAAATC 59.198 36.000 1.71 1.86 0.00 2.17
6001 8683 2.725723 ACATTGCAAAGCGTCAAAATCG 59.274 40.909 1.71 0.00 0.00 3.34
6002 8684 2.483583 TTGCAAAGCGTCAAAATCGT 57.516 40.000 0.00 0.00 0.00 3.73
6003 8685 2.031037 TGCAAAGCGTCAAAATCGTC 57.969 45.000 0.00 0.00 0.00 4.20
6004 8686 1.332065 TGCAAAGCGTCAAAATCGTCA 59.668 42.857 0.00 0.00 0.00 4.35
6005 8687 1.971962 GCAAAGCGTCAAAATCGTCAG 59.028 47.619 0.00 0.00 0.00 3.51
6006 8688 2.349438 GCAAAGCGTCAAAATCGTCAGA 60.349 45.455 0.00 0.00 0.00 3.27
6007 8689 3.848191 GCAAAGCGTCAAAATCGTCAGAA 60.848 43.478 0.00 0.00 0.00 3.02
6008 8690 3.795561 AAGCGTCAAAATCGTCAGAAG 57.204 42.857 0.00 0.00 0.00 2.85
6009 8691 2.069273 AGCGTCAAAATCGTCAGAAGG 58.931 47.619 0.00 0.00 0.00 3.46
6010 8692 1.798813 GCGTCAAAATCGTCAGAAGGT 59.201 47.619 0.00 0.00 0.00 3.50
6011 8693 2.223377 GCGTCAAAATCGTCAGAAGGTT 59.777 45.455 0.00 0.00 0.00 3.50
6012 8694 3.303791 GCGTCAAAATCGTCAGAAGGTTT 60.304 43.478 0.00 0.00 0.00 3.27
6013 8695 4.084223 GCGTCAAAATCGTCAGAAGGTTTA 60.084 41.667 0.00 0.00 0.00 2.01
6014 8696 5.390567 GCGTCAAAATCGTCAGAAGGTTTAT 60.391 40.000 0.00 0.00 0.00 1.40
6015 8697 6.015504 CGTCAAAATCGTCAGAAGGTTTATG 58.984 40.000 0.00 0.00 0.00 1.90
6016 8698 6.347402 CGTCAAAATCGTCAGAAGGTTTATGT 60.347 38.462 0.00 0.00 0.00 2.29
6017 8699 6.797033 GTCAAAATCGTCAGAAGGTTTATGTG 59.203 38.462 0.00 0.00 0.00 3.21
6018 8700 6.485313 TCAAAATCGTCAGAAGGTTTATGTGT 59.515 34.615 0.00 0.00 0.00 3.72
6019 8701 7.658167 TCAAAATCGTCAGAAGGTTTATGTGTA 59.342 33.333 0.00 0.00 0.00 2.90
6020 8702 6.963049 AATCGTCAGAAGGTTTATGTGTAC 57.037 37.500 0.00 0.00 0.00 2.90
6021 8703 4.813027 TCGTCAGAAGGTTTATGTGTACC 58.187 43.478 0.00 0.00 34.54 3.34
6022 8704 4.281435 TCGTCAGAAGGTTTATGTGTACCA 59.719 41.667 0.00 0.00 36.87 3.25
6023 8705 5.046878 TCGTCAGAAGGTTTATGTGTACCAT 60.047 40.000 0.00 0.00 36.87 3.55
6024 8706 5.642063 CGTCAGAAGGTTTATGTGTACCATT 59.358 40.000 2.73 0.00 36.87 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.564062 CTGCCATTTGGAGTCATTTGGT 59.436 45.455 0.00 0.00 37.39 3.67
86 87 3.883549 GAGATCCCCTGCCCAGCC 61.884 72.222 0.00 0.00 0.00 4.85
114 115 1.069296 CCGAAGCTGAACATGCGAAAA 60.069 47.619 0.00 0.00 35.28 2.29
191 201 1.804746 CGTGCAGTGGACACTTGTACA 60.805 52.381 15.55 0.00 40.20 2.90
210 220 2.414481 CTCAAAAGCTCACCACAGATCG 59.586 50.000 0.00 0.00 0.00 3.69
268 280 0.825010 CTGGCATATGGGACCCAAGC 60.825 60.000 19.58 20.82 36.95 4.01
431 2656 8.766476 CCACCATCTATTATCATAGGACAAGAT 58.234 37.037 0.00 0.00 34.12 2.40
436 2661 7.496346 TTCCCACCATCTATTATCATAGGAC 57.504 40.000 0.00 0.00 34.12 3.85
442 2667 5.912149 AAGCTTCCCACCATCTATTATCA 57.088 39.130 0.00 0.00 0.00 2.15
531 3074 9.030452 AGAGAAGAAACAAGATGTCAGTAGTAT 57.970 33.333 0.00 0.00 0.00 2.12
533 3076 7.232534 AGAGAGAAGAAACAAGATGTCAGTAGT 59.767 37.037 0.00 0.00 0.00 2.73
554 3097 5.424121 AACATTTCGGTTTTGTGAGAGAG 57.576 39.130 0.00 0.00 0.00 3.20
596 3139 9.914923 GCACTAAAAAGAAAACCTAACATTTTG 57.085 29.630 0.00 0.00 29.44 2.44
654 3229 1.205417 GAGGCCCATTTGGTTCATGTG 59.795 52.381 0.00 0.00 36.04 3.21
729 3306 1.258982 GTACAAGCGAGCGATTGATGG 59.741 52.381 24.90 1.46 43.35 3.51
735 3312 0.248377 GTACCGTACAAGCGAGCGAT 60.248 55.000 3.69 0.00 0.00 4.58
737 3314 1.870901 GGTACCGTACAAGCGAGCG 60.871 63.158 10.81 0.00 0.00 5.03
738 3315 1.074872 GTGGTACCGTACAAGCGAGC 61.075 60.000 7.57 0.00 0.00 5.03
739 3316 0.795735 CGTGGTACCGTACAAGCGAG 60.796 60.000 7.57 0.00 0.00 5.03
740 3317 1.209898 CGTGGTACCGTACAAGCGA 59.790 57.895 7.57 0.00 0.00 4.93
741 3318 1.802715 CCGTGGTACCGTACAAGCG 60.803 63.158 7.57 10.37 0.00 4.68
742 3319 2.096442 GCCGTGGTACCGTACAAGC 61.096 63.158 7.57 3.23 0.00 4.01
743 3320 0.319727 TTGCCGTGGTACCGTACAAG 60.320 55.000 7.57 1.47 0.00 3.16
744 3321 0.105593 TTTGCCGTGGTACCGTACAA 59.894 50.000 7.57 6.40 0.00 2.41
745 3322 0.105593 TTTTGCCGTGGTACCGTACA 59.894 50.000 7.57 0.00 0.00 2.90
746 3323 0.512518 GTTTTGCCGTGGTACCGTAC 59.487 55.000 7.57 0.00 0.00 3.67
747 3324 0.392336 AGTTTTGCCGTGGTACCGTA 59.608 50.000 7.57 0.00 0.00 4.02
748 3325 1.146707 AGTTTTGCCGTGGTACCGT 59.853 52.632 7.57 0.00 0.00 4.83
749 3326 1.572447 CAGTTTTGCCGTGGTACCG 59.428 57.895 7.57 0.00 0.00 4.02
750 3327 1.520600 CCCAGTTTTGCCGTGGTACC 61.521 60.000 4.43 4.43 0.00 3.34
775 3352 3.387091 TGCGTGTACTGGGCCGAT 61.387 61.111 0.00 0.00 0.00 4.18
914 3492 2.832201 GGAGGCAGGAGCAATGGC 60.832 66.667 1.77 1.77 44.61 4.40
915 3493 1.453379 CAGGAGGCAGGAGCAATGG 60.453 63.158 0.00 0.00 44.61 3.16
917 3495 1.919600 GACCAGGAGGCAGGAGCAAT 61.920 60.000 0.00 0.00 44.61 3.56
918 3496 2.530151 ACCAGGAGGCAGGAGCAA 60.530 61.111 0.00 0.00 44.61 3.91
920 3498 2.686835 AGACCAGGAGGCAGGAGC 60.687 66.667 0.00 0.00 39.06 4.70
921 3499 2.063378 GGAGACCAGGAGGCAGGAG 61.063 68.421 0.00 0.00 39.06 3.69
922 3500 2.039624 GGAGACCAGGAGGCAGGA 59.960 66.667 0.00 0.00 39.06 3.86
941 3526 0.193574 TCTTGGGGAGTTGGGAGAGT 59.806 55.000 0.00 0.00 0.00 3.24
942 3527 1.280421 CTTCTTGGGGAGTTGGGAGAG 59.720 57.143 0.00 0.00 0.00 3.20
1197 3782 4.158579 GGGAAATAAAGCCAAGAACAGAGG 59.841 45.833 0.00 0.00 0.00 3.69
1242 3827 3.566523 CGAGTGGATAACCTAATCTCGC 58.433 50.000 10.97 0.00 37.21 5.03
1312 3898 4.746535 TGAGGCCGATTAATCTACAACA 57.253 40.909 13.45 5.83 0.00 3.33
1313 3899 5.297547 TGATGAGGCCGATTAATCTACAAC 58.702 41.667 13.45 5.95 0.00 3.32
1316 3902 7.101652 TCTATGATGAGGCCGATTAATCTAC 57.898 40.000 13.45 5.14 0.00 2.59
1414 4004 4.021102 TCTTCCCTCTGTTCATTTGGAC 57.979 45.455 0.00 0.00 0.00 4.02
1417 4007 6.146673 GCATTTTTCTTCCCTCTGTTCATTTG 59.853 38.462 0.00 0.00 0.00 2.32
1425 4019 4.763793 TCTCAAGCATTTTTCTTCCCTCTG 59.236 41.667 0.00 0.00 0.00 3.35
1473 4077 5.800296 ACAAAAATAAATCCCTTTTCCCCG 58.200 37.500 0.00 0.00 0.00 5.73
1498 4102 6.961360 TCCAGTAGGATCTAATACACACAG 57.039 41.667 0.00 0.00 39.61 3.66
1696 4306 7.693951 CAGATTTATTTCAGTACCTTGAAAGCG 59.306 37.037 13.68 0.00 46.70 4.68
1713 4326 4.155462 CGGCAGCATATCAGCAGATTTATT 59.845 41.667 0.00 0.00 35.67 1.40
1716 4329 1.878088 CGGCAGCATATCAGCAGATTT 59.122 47.619 0.00 0.00 35.67 2.17
1718 4331 0.395686 ACGGCAGCATATCAGCAGAT 59.604 50.000 0.00 0.00 38.29 2.90
1820 4435 2.201732 GCGAATGGCGAGAAATCTGTA 58.798 47.619 0.00 0.00 44.57 2.74
1847 4462 2.765250 GATGCGAGTCACACGGGTGT 62.765 60.000 19.06 0.00 45.45 4.16
1910 4525 2.026262 GGGAAACAAGTGCTCTGGGATA 60.026 50.000 0.00 0.00 0.00 2.59
2041 4663 3.787001 GGCCCAGGGGAAGACTCG 61.787 72.222 7.91 0.00 37.50 4.18
2071 4693 1.336240 GGTGTCAAGCAGTTTGCCATC 60.336 52.381 0.00 0.00 46.52 3.51
2130 4752 3.018856 CAAGAGCTTACATCCATGGCAA 58.981 45.455 6.96 0.00 0.00 4.52
2170 4792 7.255277 GGACACTGAAACTTTTAAGAGAATGCT 60.255 37.037 0.00 0.00 0.00 3.79
2183 4805 4.451900 CTGGTTACTGGACACTGAAACTT 58.548 43.478 0.00 0.00 0.00 2.66
2312 4934 4.821805 CGTATGGGGAAATGACAAAGCTAT 59.178 41.667 0.00 0.00 0.00 2.97
2313 4935 4.080807 TCGTATGGGGAAATGACAAAGCTA 60.081 41.667 0.00 0.00 0.00 3.32
2334 4968 5.466728 CACACTAGATTATGGGACCATTTCG 59.533 44.000 9.44 0.00 37.82 3.46
2336 4970 6.327386 ACACACTAGATTATGGGACCATTT 57.673 37.500 9.44 0.00 37.82 2.32
2337 4971 5.975988 ACACACTAGATTATGGGACCATT 57.024 39.130 9.44 0.00 37.82 3.16
2338 4972 5.975988 AACACACTAGATTATGGGACCAT 57.024 39.130 9.11 9.11 40.19 3.55
2339 4973 5.487488 AGAAACACACTAGATTATGGGACCA 59.513 40.000 0.00 0.00 0.00 4.02
2340 4974 5.817816 CAGAAACACACTAGATTATGGGACC 59.182 44.000 0.00 0.00 0.00 4.46
2341 4975 6.407202 ACAGAAACACACTAGATTATGGGAC 58.593 40.000 0.00 0.00 0.00 4.46
2342 4976 6.620877 ACAGAAACACACTAGATTATGGGA 57.379 37.500 0.00 0.00 0.00 4.37
2360 4994 6.603201 AGATGAACTTCAAACAGGAAACAGAA 59.397 34.615 0.00 0.00 0.00 3.02
2369 5003 6.648310 TCAGAAGCTAGATGAACTTCAAACAG 59.352 38.462 9.00 0.00 41.80 3.16
2370 5004 6.524734 TCAGAAGCTAGATGAACTTCAAACA 58.475 36.000 9.00 0.00 41.80 2.83
2389 5023 6.767902 CAGGCAAGTAATTTAGGCTATCAGAA 59.232 38.462 0.00 0.00 34.91 3.02
2391 5025 5.471456 CCAGGCAAGTAATTTAGGCTATCAG 59.529 44.000 0.00 0.00 34.91 2.90
2443 5077 9.197694 ACTAATCAATTGATACGCTTACTCATC 57.802 33.333 21.00 0.00 33.73 2.92
2494 5128 3.855255 TCGGATTAGCATGAAATGGGA 57.145 42.857 0.00 0.00 46.86 4.37
2521 5155 5.048713 CAGACAACCAAACCCTTCATTCTAC 60.049 44.000 0.00 0.00 0.00 2.59
2541 5175 5.051891 AGCAAATGCACTTTATGTCAGAC 57.948 39.130 8.28 0.00 45.16 3.51
2562 5197 5.698545 ACGTCATCTTCCTTCTGAGAAAAAG 59.301 40.000 9.53 9.53 0.00 2.27
2567 5202 2.755655 GGACGTCATCTTCCTTCTGAGA 59.244 50.000 18.91 0.00 0.00 3.27
2608 5243 1.159285 TTTCACTTGCTGGCATCTCG 58.841 50.000 0.00 0.00 0.00 4.04
2611 5246 2.991190 CACATTTTCACTTGCTGGCATC 59.009 45.455 0.00 0.00 0.00 3.91
2629 5264 0.697658 TCCCATTCATCTGTGGCACA 59.302 50.000 20.76 20.76 34.08 4.57
2674 5309 5.070001 CCCACCTTCACTAGACATGAAAAA 58.930 41.667 0.00 0.00 35.70 1.94
2785 5421 6.047231 GCATATCATAGATCTGCAGTGCATA 58.953 40.000 20.10 12.58 38.13 3.14
2823 5459 7.140705 TGAACTCAGCAACATCATTTAGTTTG 58.859 34.615 0.00 0.00 0.00 2.93
3258 5910 3.780804 TGCCTTTTAGTAGACTTGGCA 57.219 42.857 11.62 11.62 45.31 4.92
3493 6145 2.037136 CAAGGAGAGCCTGCCAACG 61.037 63.158 0.00 0.00 46.28 4.10
3700 6352 8.970020 AGTTGCATACTTATGGAATTTGATTGA 58.030 29.630 6.48 0.00 44.02 2.57
3722 6378 3.430453 TCCCAATAAAGGCAAGGAGTTG 58.570 45.455 0.00 0.00 36.67 3.16
3818 6474 5.766222 AGTTTCATCAAATGTCAAGTGAGC 58.234 37.500 0.00 0.00 0.00 4.26
3886 6542 3.503363 CCATCAAGTTCTTAAGCAGCACA 59.497 43.478 0.00 0.00 0.00 4.57
3987 6643 5.579753 ATGGGATGAGCATAGAATCTTGT 57.420 39.130 0.00 0.00 0.00 3.16
3988 6644 6.489022 TCAAATGGGATGAGCATAGAATCTTG 59.511 38.462 0.00 0.00 0.00 3.02
4011 6667 4.839121 ACAAAAGACTTACACACCACTCA 58.161 39.130 0.00 0.00 0.00 3.41
4041 6697 8.544622 TGACCTAAAATGGTTGATACTGATACA 58.455 33.333 0.00 0.00 41.00 2.29
4042 6698 8.958119 TGACCTAAAATGGTTGATACTGATAC 57.042 34.615 0.00 0.00 41.00 2.24
4044 6700 8.906867 CATTGACCTAAAATGGTTGATACTGAT 58.093 33.333 0.00 0.00 41.00 2.90
4068 6724 5.682234 TCACTGTTGGATCATGTAGTCAT 57.318 39.130 0.00 0.00 34.21 3.06
4104 6760 5.916883 CACCTAAGTGCTTGTGAATTTTGAG 59.083 40.000 0.00 0.00 37.14 3.02
4160 6816 3.532892 GCTTGAAGTATCATGCCATCG 57.467 47.619 5.64 0.00 45.94 3.84
4238 6894 8.322906 TCAAAATCATACTCAACCTGTAAGTG 57.677 34.615 0.00 0.00 0.00 3.16
4312 6968 2.684881 CAGGATGTTGGATTTTCCCTCG 59.315 50.000 0.00 0.00 35.03 4.63
4324 6980 1.004044 AGGTCTGAAGGCAGGATGTTG 59.996 52.381 0.00 0.00 42.53 3.33
4343 6999 1.270625 TGGACGAAAAGGCACTACCAG 60.271 52.381 0.00 0.00 43.14 4.00
4450 7106 5.365021 CCTGGTAAATCTCAGGTTCAGAT 57.635 43.478 0.00 0.00 44.03 2.90
4477 7133 7.423844 AATAAATGGAAGGAGGGATTTGTTC 57.576 36.000 0.00 0.00 0.00 3.18
4479 7135 8.514504 AGATAATAAATGGAAGGAGGGATTTGT 58.485 33.333 0.00 0.00 0.00 2.83
4480 7136 8.946797 AGATAATAAATGGAAGGAGGGATTTG 57.053 34.615 0.00 0.00 0.00 2.32
4482 7138 9.411848 AGTAGATAATAAATGGAAGGAGGGATT 57.588 33.333 0.00 0.00 0.00 3.01
4490 7146 7.038941 ACGGAGGGAGTAGATAATAAATGGAAG 60.039 40.741 0.00 0.00 0.00 3.46
4491 7147 6.785963 ACGGAGGGAGTAGATAATAAATGGAA 59.214 38.462 0.00 0.00 0.00 3.53
4496 7152 6.379579 AGGAACGGAGGGAGTAGATAATAAA 58.620 40.000 0.00 0.00 0.00 1.40
4502 7158 3.967467 TTAGGAACGGAGGGAGTAGAT 57.033 47.619 0.00 0.00 0.00 1.98
4503 7159 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
4504 7160 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
4505 7161 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
4506 7162 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
4507 7163 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
4508 7164 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
4509 7165 4.439968 GACAAGTATTTAGGAACGGAGGG 58.560 47.826 0.00 0.00 0.00 4.30
4510 7166 4.439968 GGACAAGTATTTAGGAACGGAGG 58.560 47.826 0.00 0.00 0.00 4.30
4511 7167 4.110482 CGGACAAGTATTTAGGAACGGAG 58.890 47.826 0.00 0.00 0.00 4.63
4512 7168 3.676873 GCGGACAAGTATTTAGGAACGGA 60.677 47.826 0.00 0.00 0.00 4.69
4513 7169 2.606272 GCGGACAAGTATTTAGGAACGG 59.394 50.000 0.00 0.00 0.00 4.44
4514 7170 3.255725 TGCGGACAAGTATTTAGGAACG 58.744 45.455 0.00 0.00 0.00 3.95
4515 7171 5.813080 AATGCGGACAAGTATTTAGGAAC 57.187 39.130 0.00 0.00 0.00 3.62
4516 7172 6.827586 AAAATGCGGACAAGTATTTAGGAA 57.172 33.333 0.00 0.00 35.83 3.36
4517 7173 7.390996 TGTTAAAATGCGGACAAGTATTTAGGA 59.609 33.333 0.00 0.00 35.83 2.94
4518 7174 7.531716 TGTTAAAATGCGGACAAGTATTTAGG 58.468 34.615 0.00 0.00 35.83 2.69
4519 7175 8.958175 TTGTTAAAATGCGGACAAGTATTTAG 57.042 30.769 0.00 0.00 35.83 1.85
4520 7176 9.915629 ATTTGTTAAAATGCGGACAAGTATTTA 57.084 25.926 0.00 0.00 35.83 1.40
4521 7177 8.707839 CATTTGTTAAAATGCGGACAAGTATTT 58.292 29.630 0.00 0.00 44.52 1.40
4522 7178 8.238481 CATTTGTTAAAATGCGGACAAGTATT 57.762 30.769 0.00 0.00 44.52 1.89
4523 7179 7.810766 CATTTGTTAAAATGCGGACAAGTAT 57.189 32.000 0.00 0.00 44.52 2.12
4545 7201 9.809096 CACTCATTTTACTCTGTATGTAGTCAT 57.191 33.333 0.00 0.00 38.00 3.06
4546 7202 9.020731 TCACTCATTTTACTCTGTATGTAGTCA 57.979 33.333 0.00 0.00 0.00 3.41
4547 7203 9.856488 TTCACTCATTTTACTCTGTATGTAGTC 57.144 33.333 0.00 0.00 0.00 2.59
4554 7210 9.856488 GTGTAGATTCACTCATTTTACTCTGTA 57.144 33.333 0.00 0.00 35.68 2.74
4555 7211 8.589338 AGTGTAGATTCACTCATTTTACTCTGT 58.411 33.333 0.00 0.00 44.07 3.41
4556 7212 8.994429 AGTGTAGATTCACTCATTTTACTCTG 57.006 34.615 0.00 0.00 44.07 3.35
4597 7253 8.585018 TCAAATGACTATCACATACGGATGTAT 58.415 33.333 14.23 10.02 44.82 2.29
4598 7254 7.947282 TCAAATGACTATCACATACGGATGTA 58.053 34.615 14.23 2.61 44.82 2.29
4600 7256 7.713764 TTCAAATGACTATCACATACGGATG 57.286 36.000 5.94 5.94 39.16 3.51
4601 7257 8.777413 CATTTCAAATGACTATCACATACGGAT 58.223 33.333 3.82 0.00 0.00 4.18
4602 7258 7.254761 GCATTTCAAATGACTATCACATACGGA 60.255 37.037 14.65 0.00 0.00 4.69
4603 7259 6.852853 GCATTTCAAATGACTATCACATACGG 59.147 38.462 14.65 0.00 0.00 4.02
4604 7260 6.852853 GGCATTTCAAATGACTATCACATACG 59.147 38.462 14.65 0.00 0.00 3.06
4605 7261 7.934457 AGGCATTTCAAATGACTATCACATAC 58.066 34.615 17.52 0.00 35.20 2.39
4606 7262 9.276590 CTAGGCATTTCAAATGACTATCACATA 57.723 33.333 23.50 4.36 38.80 2.29
4607 7263 7.994911 TCTAGGCATTTCAAATGACTATCACAT 59.005 33.333 23.50 1.77 38.80 3.21
4608 7264 7.337938 TCTAGGCATTTCAAATGACTATCACA 58.662 34.615 23.50 5.75 38.80 3.58
4609 7265 7.792374 TCTAGGCATTTCAAATGACTATCAC 57.208 36.000 23.50 0.15 38.80 3.06
4610 7266 8.806429 TTTCTAGGCATTTCAAATGACTATCA 57.194 30.769 23.50 12.23 38.80 2.15
4611 7267 9.113838 TCTTTCTAGGCATTTCAAATGACTATC 57.886 33.333 23.50 1.52 38.80 2.08
4612 7268 8.897752 GTCTTTCTAGGCATTTCAAATGACTAT 58.102 33.333 23.50 4.64 38.80 2.12
4613 7269 7.882791 TGTCTTTCTAGGCATTTCAAATGACTA 59.117 33.333 22.19 22.19 38.54 2.59
4614 7270 6.716628 TGTCTTTCTAGGCATTTCAAATGACT 59.283 34.615 22.35 22.35 41.04 3.41
4615 7271 6.913170 TGTCTTTCTAGGCATTTCAAATGAC 58.087 36.000 14.65 11.48 29.10 3.06
4616 7272 7.231317 ACTTGTCTTTCTAGGCATTTCAAATGA 59.769 33.333 14.65 0.00 35.56 2.57
4617 7273 7.373493 ACTTGTCTTTCTAGGCATTTCAAATG 58.627 34.615 5.68 5.68 35.56 2.32
4618 7274 7.530426 ACTTGTCTTTCTAGGCATTTCAAAT 57.470 32.000 0.00 0.00 35.56 2.32
4619 7275 6.959639 ACTTGTCTTTCTAGGCATTTCAAA 57.040 33.333 0.00 0.00 35.56 2.69
4620 7276 8.635765 AATACTTGTCTTTCTAGGCATTTCAA 57.364 30.769 0.00 0.00 35.56 2.69
4621 7277 8.635765 AAATACTTGTCTTTCTAGGCATTTCA 57.364 30.769 0.00 0.00 35.56 2.69
4623 7279 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
4624 7280 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
4625 7281 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
4626 7282 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
4627 7283 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
4628 7284 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
4629 7285 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
4630 7286 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
4631 7287 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
4632 7288 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
4633 7289 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4634 7290 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4635 7291 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4636 7292 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
4637 7293 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
4638 7294 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
4639 7295 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
4640 7296 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4641 7297 4.261952 GCTACTCCCTCCGTTCCTAAATAC 60.262 50.000 0.00 0.00 0.00 1.89
4642 7298 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
4643 7299 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
4644 7300 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
4645 7301 1.006281 TGCTACTCCCTCCGTTCCTAA 59.994 52.381 0.00 0.00 0.00 2.69
4646 7302 0.627451 TGCTACTCCCTCCGTTCCTA 59.373 55.000 0.00 0.00 0.00 2.94
4647 7303 0.684805 CTGCTACTCCCTCCGTTCCT 60.685 60.000 0.00 0.00 0.00 3.36
4648 7304 0.683504 TCTGCTACTCCCTCCGTTCC 60.684 60.000 0.00 0.00 0.00 3.62
4649 7305 1.404843 ATCTGCTACTCCCTCCGTTC 58.595 55.000 0.00 0.00 0.00 3.95
4650 7306 1.757699 GAATCTGCTACTCCCTCCGTT 59.242 52.381 0.00 0.00 0.00 4.44
4651 7307 1.342076 TGAATCTGCTACTCCCTCCGT 60.342 52.381 0.00 0.00 0.00 4.69
4652 7308 1.339610 CTGAATCTGCTACTCCCTCCG 59.660 57.143 0.00 0.00 0.00 4.63
4653 7309 2.672098 TCTGAATCTGCTACTCCCTCC 58.328 52.381 0.00 0.00 0.00 4.30
4654 7310 4.100808 ACATTCTGAATCTGCTACTCCCTC 59.899 45.833 0.00 0.00 0.00 4.30
4655 7311 4.036518 ACATTCTGAATCTGCTACTCCCT 58.963 43.478 0.00 0.00 0.00 4.20
4656 7312 4.414337 ACATTCTGAATCTGCTACTCCC 57.586 45.455 0.00 0.00 0.00 4.30
4657 7313 5.423015 TGAACATTCTGAATCTGCTACTCC 58.577 41.667 0.00 0.00 0.00 3.85
4658 7314 6.336566 TCTGAACATTCTGAATCTGCTACTC 58.663 40.000 0.00 0.00 33.11 2.59
4659 7315 6.291648 TCTGAACATTCTGAATCTGCTACT 57.708 37.500 0.00 0.00 33.11 2.57
4660 7316 7.551035 AATCTGAACATTCTGAATCTGCTAC 57.449 36.000 0.00 0.00 38.39 3.58
4676 7332 5.577945 CCATGCAAACCAACATAATCTGAAC 59.422 40.000 0.00 0.00 0.00 3.18
4684 7340 1.472082 CTCGCCATGCAAACCAACATA 59.528 47.619 0.00 0.00 0.00 2.29
4685 7341 0.244450 CTCGCCATGCAAACCAACAT 59.756 50.000 0.00 0.00 0.00 2.71
4687 7343 1.080569 CCTCGCCATGCAAACCAAC 60.081 57.895 0.00 0.00 0.00 3.77
4688 7344 1.112315 AACCTCGCCATGCAAACCAA 61.112 50.000 0.00 0.00 0.00 3.67
4689 7345 1.112315 AAACCTCGCCATGCAAACCA 61.112 50.000 0.00 0.00 0.00 3.67
4691 7347 2.715737 TTAAACCTCGCCATGCAAAC 57.284 45.000 0.00 0.00 0.00 2.93
4692 7348 2.288518 GGTTTAAACCTCGCCATGCAAA 60.289 45.455 26.98 0.00 45.75 3.68
4693 7349 1.271102 GGTTTAAACCTCGCCATGCAA 59.729 47.619 26.98 0.00 45.75 4.08
4694 7350 0.885196 GGTTTAAACCTCGCCATGCA 59.115 50.000 26.98 0.00 45.75 3.96
4695 7351 3.713936 GGTTTAAACCTCGCCATGC 57.286 52.632 26.98 0.31 45.75 4.06
4704 7360 6.512903 GAGCAAACTCAGTACAGGTTTAAACC 60.513 42.308 26.98 26.98 44.93 3.27
4713 7369 3.579709 ACATCGAGCAAACTCAGTACAG 58.420 45.455 0.00 0.00 43.66 2.74
4862 7518 3.467803 CCGGATGGAGGTTCATAAACTC 58.532 50.000 0.00 0.00 37.49 3.01
4984 7640 0.248843 AAGCCTCTCAAGCTCCTTCG 59.751 55.000 0.00 0.00 40.49 3.79
5032 7688 1.865340 CATCCATGTGCTGATGAGACG 59.135 52.381 4.22 0.00 40.64 4.18
5066 7722 3.127548 CACAGCAGGCCATTACTACAAAG 59.872 47.826 5.01 0.00 0.00 2.77
5067 7723 3.081061 CACAGCAGGCCATTACTACAAA 58.919 45.455 5.01 0.00 0.00 2.83
5100 7756 4.743124 AGATTTAGACCCTAGTAGGAGGC 58.257 47.826 18.43 9.93 37.67 4.70
5104 7760 7.562088 AGTCTTGAAGATTTAGACCCTAGTAGG 59.438 40.741 9.48 9.48 39.23 3.18
5122 7778 4.290711 TGATGCAGATCCAAGTCTTGAA 57.709 40.909 14.42 0.00 0.00 2.69
5141 7798 4.520111 CACAGGAAGGATCACAAACAATGA 59.480 41.667 0.00 0.00 0.00 2.57
5183 7840 9.906660 CAAAAACACAGGCTTAACTTGATAATA 57.093 29.630 0.00 0.00 0.00 0.98
5268 7925 4.483311 CAGAGTTGGGAGTAACTACGAAC 58.517 47.826 0.00 0.00 40.78 3.95
5369 8027 7.849804 TCACATTAAATTCTCCAGAGTTAGC 57.150 36.000 0.00 0.00 0.00 3.09
5592 8270 3.451526 TGCTCAGCACATAATCTTCTCG 58.548 45.455 0.00 0.00 31.71 4.04
5597 8275 6.320418 TCATTCATTTGCTCAGCACATAATCT 59.680 34.615 0.00 0.00 38.71 2.40
5955 8635 5.839621 TCTAACTAGTTTTGTTCTGCTCGT 58.160 37.500 14.49 0.00 0.00 4.18
5974 8656 5.871465 TTGACGCTTTGCAATGTATCTAA 57.129 34.783 13.29 6.51 0.00 2.10
5978 8660 4.558470 CGATTTTGACGCTTTGCAATGTAT 59.442 37.500 13.29 2.71 0.00 2.29
5979 8661 3.911365 CGATTTTGACGCTTTGCAATGTA 59.089 39.130 13.29 0.00 0.00 2.29
5980 8662 2.725723 CGATTTTGACGCTTTGCAATGT 59.274 40.909 13.29 6.69 0.00 2.71
5981 8663 2.725723 ACGATTTTGACGCTTTGCAATG 59.274 40.909 0.00 3.50 0.00 2.82
5982 8664 2.979813 GACGATTTTGACGCTTTGCAAT 59.020 40.909 0.00 0.00 0.00 3.56
5983 8665 2.223363 TGACGATTTTGACGCTTTGCAA 60.223 40.909 0.00 0.00 0.00 4.08
5984 8666 1.332065 TGACGATTTTGACGCTTTGCA 59.668 42.857 0.00 0.00 0.00 4.08
5985 8667 1.971962 CTGACGATTTTGACGCTTTGC 59.028 47.619 0.00 0.00 0.00 3.68
5986 8668 3.519908 TCTGACGATTTTGACGCTTTG 57.480 42.857 0.00 0.00 0.00 2.77
5987 8669 3.058914 CCTTCTGACGATTTTGACGCTTT 60.059 43.478 0.00 0.00 0.00 3.51
5988 8670 2.480419 CCTTCTGACGATTTTGACGCTT 59.520 45.455 0.00 0.00 0.00 4.68
5989 8671 2.069273 CCTTCTGACGATTTTGACGCT 58.931 47.619 0.00 0.00 0.00 5.07
5990 8672 1.798813 ACCTTCTGACGATTTTGACGC 59.201 47.619 0.00 0.00 0.00 5.19
5991 8673 4.468095 AAACCTTCTGACGATTTTGACG 57.532 40.909 0.00 0.00 0.00 4.35
5992 8674 6.797033 CACATAAACCTTCTGACGATTTTGAC 59.203 38.462 0.00 0.00 0.00 3.18
5993 8675 6.485313 ACACATAAACCTTCTGACGATTTTGA 59.515 34.615 0.00 0.00 0.00 2.69
5994 8676 6.668323 ACACATAAACCTTCTGACGATTTTG 58.332 36.000 0.00 0.00 0.00 2.44
5995 8677 6.877611 ACACATAAACCTTCTGACGATTTT 57.122 33.333 0.00 0.00 0.00 1.82
5996 8678 6.370718 GGTACACATAAACCTTCTGACGATTT 59.629 38.462 0.00 0.00 32.72 2.17
5997 8679 5.873164 GGTACACATAAACCTTCTGACGATT 59.127 40.000 0.00 0.00 32.72 3.34
5998 8680 5.046878 TGGTACACATAAACCTTCTGACGAT 60.047 40.000 0.00 0.00 36.67 3.73
5999 8681 4.281435 TGGTACACATAAACCTTCTGACGA 59.719 41.667 0.00 0.00 36.67 4.20
6000 8682 4.562082 TGGTACACATAAACCTTCTGACG 58.438 43.478 0.00 0.00 36.67 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.