Multiple sequence alignment - TraesCS3D01G097500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G097500 chr3D 100.000 2858 0 0 1 2858 49542139 49539282 0.000000e+00 5278
1 TraesCS3D01G097500 chr3D 97.632 760 14 2 1 759 497962856 497962100 0.000000e+00 1301
2 TraesCS3D01G097500 chr3D 92.931 481 26 3 2385 2858 559915570 559915091 0.000000e+00 693
3 TraesCS3D01G097500 chr3A 92.732 1541 60 19 888 2384 62435180 62433648 0.000000e+00 2178
4 TraesCS3D01G097500 chr3A 96.025 478 17 2 2383 2858 706196474 706196951 0.000000e+00 776
5 TraesCS3D01G097500 chr3A 92.197 487 35 3 275 759 142922420 142922905 0.000000e+00 686
6 TraesCS3D01G097500 chr3A 94.500 200 9 2 561 759 142908087 142907889 9.950000e-80 307
7 TraesCS3D01G097500 chr3A 88.827 179 17 1 93 271 142921935 142922110 1.720000e-52 217
8 TraesCS3D01G097500 chr3B 93.996 1066 44 8 888 1942 78851984 78850928 0.000000e+00 1596
9 TraesCS3D01G097500 chr3B 87.229 462 31 8 1940 2382 78847612 78847160 4.250000e-138 501
10 TraesCS3D01G097500 chr7D 94.474 760 17 5 1 759 4250795 4250060 0.000000e+00 1147
11 TraesCS3D01G097500 chr7D 97.059 476 10 4 2385 2858 213759925 213759452 0.000000e+00 798
12 TraesCS3D01G097500 chr7D 93.958 480 13 8 2384 2858 631356612 631356144 0.000000e+00 712
13 TraesCS3D01G097500 chr7D 93.790 467 21 6 2384 2849 169807072 169807531 0.000000e+00 695
14 TraesCS3D01G097500 chr7D 95.146 103 5 0 762 864 586778840 586778942 2.280000e-36 163
15 TraesCS3D01G097500 chr5D 98.105 475 7 2 2385 2858 561560317 561560790 0.000000e+00 826
16 TraesCS3D01G097500 chr5D 95.192 104 5 0 762 865 546011531 546011428 6.330000e-37 165
17 TraesCS3D01G097500 chr6D 95.218 481 15 5 2384 2858 312196175 312196653 0.000000e+00 754
18 TraesCS3D01G097500 chr6B 93.096 478 27 5 2384 2858 120681831 120681357 0.000000e+00 695
19 TraesCS3D01G097500 chr6B 92.920 113 6 2 757 867 170863668 170863780 2.280000e-36 163
20 TraesCS3D01G097500 chr5A 91.770 486 38 2 275 759 423038820 423039304 0.000000e+00 675
21 TraesCS3D01G097500 chr5A 91.736 484 39 1 280 763 662628458 662628940 0.000000e+00 671
22 TraesCS3D01G097500 chr5A 90.406 271 23 1 1 271 662627876 662628143 1.260000e-93 353
23 TraesCS3D01G097500 chr5A 89.668 271 25 1 1 271 423038244 423038511 2.730000e-90 342
24 TraesCS3D01G097500 chr1B 92.308 481 23 8 2376 2849 669063762 669064235 0.000000e+00 671
25 TraesCS3D01G097500 chr1A 89.300 486 38 3 275 759 530727695 530727223 5.270000e-167 597
26 TraesCS3D01G097500 chr1A 92.453 371 25 3 394 762 530727732 530728101 7.010000e-146 527
27 TraesCS3D01G097500 chr7A 82.609 483 58 15 281 759 32829559 32830019 1.230000e-108 403
28 TraesCS3D01G097500 chr7A 82.609 483 58 15 281 759 32845333 32845793 1.230000e-108 403
29 TraesCS3D01G097500 chr7A 85.000 380 35 14 293 667 567014364 567014726 1.620000e-97 366
30 TraesCS3D01G097500 chr7A 93.750 112 6 1 757 867 730881840 730881729 1.760000e-37 167
31 TraesCS3D01G097500 chr1D 78.746 287 39 10 275 559 138969765 138970031 3.790000e-39 172
32 TraesCS3D01G097500 chr2D 95.283 106 4 1 762 866 579065518 579065413 1.760000e-37 167
33 TraesCS3D01G097500 chr2D 94.340 106 6 0 763 868 526224660 526224765 2.280000e-36 163
34 TraesCS3D01G097500 chr7B 95.192 104 5 0 763 866 15101066 15101169 6.330000e-37 165
35 TraesCS3D01G097500 chr4A 95.192 104 5 0 763 866 543608315 543608212 6.330000e-37 165
36 TraesCS3D01G097500 chr4B 95.146 103 5 0 762 864 73262662 73262764 2.280000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G097500 chr3D 49539282 49542139 2857 True 5278.0 5278 100.0000 1 2858 1 chr3D.!!$R1 2857
1 TraesCS3D01G097500 chr3D 497962100 497962856 756 True 1301.0 1301 97.6320 1 759 1 chr3D.!!$R2 758
2 TraesCS3D01G097500 chr3A 62433648 62435180 1532 True 2178.0 2178 92.7320 888 2384 1 chr3A.!!$R1 1496
3 TraesCS3D01G097500 chr3A 142921935 142922905 970 False 451.5 686 90.5120 93 759 2 chr3A.!!$F2 666
4 TraesCS3D01G097500 chr3B 78847160 78851984 4824 True 1048.5 1596 90.6125 888 2382 2 chr3B.!!$R1 1494
5 TraesCS3D01G097500 chr7D 4250060 4250795 735 True 1147.0 1147 94.4740 1 759 1 chr7D.!!$R1 758
6 TraesCS3D01G097500 chr5A 662627876 662628940 1064 False 512.0 671 91.0710 1 763 2 chr5A.!!$F2 762
7 TraesCS3D01G097500 chr5A 423038244 423039304 1060 False 508.5 675 90.7190 1 759 2 chr5A.!!$F1 758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 1088 0.029681 ATGGGGGTGAGGTAGATGCT 60.03 55.0 0.0 0.0 0.0 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2546 6227 0.10852 AATGGAAAGCAATGCAGCGG 60.109 50.0 8.35 0.0 40.15 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
231 232 7.558081 TGATTACTTCTAGAGTACATGCAGACT 59.442 37.037 0.00 0.00 40.51 3.24
233 234 5.013547 ACTTCTAGAGTACATGCAGACTGT 58.986 41.667 3.99 0.10 36.65 3.55
234 235 5.124776 ACTTCTAGAGTACATGCAGACTGTC 59.875 44.000 3.99 0.00 36.65 3.51
235 236 4.849518 TCTAGAGTACATGCAGACTGTCT 58.150 43.478 4.06 4.06 0.00 3.41
305 613 7.113658 AGTACTAATCACCAAACTGATCGAT 57.886 36.000 0.00 0.00 30.12 3.59
409 717 1.599667 CGCAGAGAAGTACGTGTGTGT 60.600 52.381 0.00 0.00 0.00 3.72
415 723 1.155424 AAGTACGTGTGTGTTGGGCG 61.155 55.000 0.00 0.00 0.00 6.13
523 831 3.061139 CGTCTCGTCGAAAGGAAATATGC 60.061 47.826 0.00 0.00 0.00 3.14
548 856 1.075896 AGGCCCAAACAAACCGGAA 60.076 52.632 9.46 0.00 0.00 4.30
555 863 0.668535 AAACAAACCGGAAGAGCAGC 59.331 50.000 9.46 0.00 0.00 5.25
759 1068 2.307686 GGGGGTGATGTGGACTTCTTTA 59.692 50.000 0.00 0.00 0.00 1.85
763 1072 4.399303 GGGTGATGTGGACTTCTTTAATGG 59.601 45.833 0.00 0.00 0.00 3.16
764 1073 4.399303 GGTGATGTGGACTTCTTTAATGGG 59.601 45.833 0.00 0.00 0.00 4.00
765 1074 4.399303 GTGATGTGGACTTCTTTAATGGGG 59.601 45.833 0.00 0.00 0.00 4.96
766 1075 3.449746 TGTGGACTTCTTTAATGGGGG 57.550 47.619 0.00 0.00 0.00 5.40
767 1076 2.719705 TGTGGACTTCTTTAATGGGGGT 59.280 45.455 0.00 0.00 0.00 4.95
768 1077 3.089284 GTGGACTTCTTTAATGGGGGTG 58.911 50.000 0.00 0.00 0.00 4.61
769 1078 2.990284 TGGACTTCTTTAATGGGGGTGA 59.010 45.455 0.00 0.00 0.00 4.02
770 1079 3.010138 TGGACTTCTTTAATGGGGGTGAG 59.990 47.826 0.00 0.00 0.00 3.51
771 1080 3.621558 GACTTCTTTAATGGGGGTGAGG 58.378 50.000 0.00 0.00 0.00 3.86
772 1081 2.993863 ACTTCTTTAATGGGGGTGAGGT 59.006 45.455 0.00 0.00 0.00 3.85
773 1082 4.180723 ACTTCTTTAATGGGGGTGAGGTA 58.819 43.478 0.00 0.00 0.00 3.08
774 1083 4.227527 ACTTCTTTAATGGGGGTGAGGTAG 59.772 45.833 0.00 0.00 0.00 3.18
775 1084 4.083080 TCTTTAATGGGGGTGAGGTAGA 57.917 45.455 0.00 0.00 0.00 2.59
776 1085 4.641868 TCTTTAATGGGGGTGAGGTAGAT 58.358 43.478 0.00 0.00 0.00 1.98
777 1086 4.412199 TCTTTAATGGGGGTGAGGTAGATG 59.588 45.833 0.00 0.00 0.00 2.90
778 1087 0.846693 AATGGGGGTGAGGTAGATGC 59.153 55.000 0.00 0.00 0.00 3.91
779 1088 0.029681 ATGGGGGTGAGGTAGATGCT 60.030 55.000 0.00 0.00 0.00 3.79
780 1089 0.253160 TGGGGGTGAGGTAGATGCTT 60.253 55.000 0.00 0.00 0.00 3.91
781 1090 0.919710 GGGGGTGAGGTAGATGCTTT 59.080 55.000 0.00 0.00 0.00 3.51
782 1091 1.408822 GGGGGTGAGGTAGATGCTTTG 60.409 57.143 0.00 0.00 0.00 2.77
783 1092 1.282157 GGGGTGAGGTAGATGCTTTGT 59.718 52.381 0.00 0.00 0.00 2.83
784 1093 2.359900 GGGTGAGGTAGATGCTTTGTG 58.640 52.381 0.00 0.00 0.00 3.33
785 1094 2.027192 GGGTGAGGTAGATGCTTTGTGA 60.027 50.000 0.00 0.00 0.00 3.58
786 1095 3.370953 GGGTGAGGTAGATGCTTTGTGAT 60.371 47.826 0.00 0.00 0.00 3.06
787 1096 4.265073 GGTGAGGTAGATGCTTTGTGATT 58.735 43.478 0.00 0.00 0.00 2.57
788 1097 4.702131 GGTGAGGTAGATGCTTTGTGATTT 59.298 41.667 0.00 0.00 0.00 2.17
789 1098 5.392380 GGTGAGGTAGATGCTTTGTGATTTG 60.392 44.000 0.00 0.00 0.00 2.32
790 1099 5.182001 GTGAGGTAGATGCTTTGTGATTTGT 59.818 40.000 0.00 0.00 0.00 2.83
791 1100 5.181811 TGAGGTAGATGCTTTGTGATTTGTG 59.818 40.000 0.00 0.00 0.00 3.33
792 1101 5.316167 AGGTAGATGCTTTGTGATTTGTGA 58.684 37.500 0.00 0.00 0.00 3.58
793 1102 5.769662 AGGTAGATGCTTTGTGATTTGTGAA 59.230 36.000 0.00 0.00 0.00 3.18
794 1103 6.435277 AGGTAGATGCTTTGTGATTTGTGAAT 59.565 34.615 0.00 0.00 0.00 2.57
795 1104 6.529125 GGTAGATGCTTTGTGATTTGTGAATG 59.471 38.462 0.00 0.00 0.00 2.67
796 1105 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
797 1106 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
798 1107 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
799 1108 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
807 1116 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
808 1117 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
809 1118 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
810 1119 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
811 1120 1.331756 GAATGCCACGTGTCATCCATC 59.668 52.381 13.12 3.25 0.00 3.51
812 1121 0.252761 ATGCCACGTGTCATCCATCA 59.747 50.000 15.65 0.00 0.00 3.07
813 1122 0.391528 TGCCACGTGTCATCCATCAG 60.392 55.000 15.65 0.00 0.00 2.90
814 1123 1.091771 GCCACGTGTCATCCATCAGG 61.092 60.000 15.65 0.00 0.00 3.86
829 1138 1.126488 TCAGGATGGATCTCACCTGC 58.874 55.000 19.77 0.23 46.36 4.85
830 1139 1.129917 CAGGATGGATCTCACCTGCT 58.870 55.000 15.37 0.00 42.30 4.24
831 1140 2.091111 TCAGGATGGATCTCACCTGCTA 60.091 50.000 19.77 8.05 46.36 3.49
832 1141 2.702478 CAGGATGGATCTCACCTGCTAA 59.298 50.000 15.37 0.00 42.30 3.09
833 1142 2.703007 AGGATGGATCTCACCTGCTAAC 59.297 50.000 0.00 0.00 0.00 2.34
834 1143 2.224402 GGATGGATCTCACCTGCTAACC 60.224 54.545 0.00 0.00 0.00 2.85
835 1144 1.204146 TGGATCTCACCTGCTAACCC 58.796 55.000 0.00 0.00 0.00 4.11
836 1145 0.105039 GGATCTCACCTGCTAACCCG 59.895 60.000 0.00 0.00 0.00 5.28
837 1146 0.824759 GATCTCACCTGCTAACCCGT 59.175 55.000 0.00 0.00 0.00 5.28
838 1147 0.537188 ATCTCACCTGCTAACCCGTG 59.463 55.000 0.00 0.00 0.00 4.94
839 1148 0.541063 TCTCACCTGCTAACCCGTGA 60.541 55.000 0.00 0.00 34.26 4.35
840 1149 0.108615 CTCACCTGCTAACCCGTGAG 60.109 60.000 2.01 2.01 44.38 3.51
841 1150 0.541063 TCACCTGCTAACCCGTGAGA 60.541 55.000 0.00 0.00 31.80 3.27
842 1151 0.389948 CACCTGCTAACCCGTGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
843 1152 0.542232 ACCTGCTAACCCGTGAGACT 60.542 55.000 0.00 0.00 0.00 3.24
844 1153 0.608640 CCTGCTAACCCGTGAGACTT 59.391 55.000 0.00 0.00 0.00 3.01
845 1154 1.673033 CCTGCTAACCCGTGAGACTTG 60.673 57.143 0.00 0.00 0.00 3.16
846 1155 0.320374 TGCTAACCCGTGAGACTTGG 59.680 55.000 0.00 0.00 0.00 3.61
847 1156 0.320697 GCTAACCCGTGAGACTTGGT 59.679 55.000 0.00 0.00 0.00 3.67
848 1157 1.672145 GCTAACCCGTGAGACTTGGTC 60.672 57.143 0.00 0.00 0.00 4.02
849 1158 1.893801 CTAACCCGTGAGACTTGGTCT 59.106 52.381 0.00 0.00 46.42 3.85
864 1173 8.705048 AGACTTGGTCTCGTAGAATTATTTTC 57.295 34.615 0.00 0.00 38.71 2.29
865 1174 7.764901 AGACTTGGTCTCGTAGAATTATTTTCC 59.235 37.037 0.00 0.00 38.71 3.13
866 1175 7.621796 ACTTGGTCTCGTAGAATTATTTTCCT 58.378 34.615 0.00 0.00 34.09 3.36
867 1176 8.101419 ACTTGGTCTCGTAGAATTATTTTCCTT 58.899 33.333 0.00 0.00 34.09 3.36
868 1177 8.857694 TTGGTCTCGTAGAATTATTTTCCTTT 57.142 30.769 0.00 0.00 34.09 3.11
869 1178 8.857694 TGGTCTCGTAGAATTATTTTCCTTTT 57.142 30.769 0.00 0.00 34.09 2.27
870 1179 8.726988 TGGTCTCGTAGAATTATTTTCCTTTTG 58.273 33.333 0.00 0.00 34.09 2.44
871 1180 8.182227 GGTCTCGTAGAATTATTTTCCTTTTGG 58.818 37.037 0.00 0.00 37.11 3.28
872 1181 8.182227 GTCTCGTAGAATTATTTTCCTTTTGGG 58.818 37.037 0.00 0.00 36.51 4.12
873 1182 7.886446 TCTCGTAGAATTATTTTCCTTTTGGGT 59.114 33.333 0.00 0.00 36.51 4.51
874 1183 8.047413 TCGTAGAATTATTTTCCTTTTGGGTC 57.953 34.615 0.00 0.00 40.87 4.46
875 1184 7.666388 TCGTAGAATTATTTTCCTTTTGGGTCA 59.334 33.333 0.00 0.00 40.87 4.02
876 1185 8.466798 CGTAGAATTATTTTCCTTTTGGGTCAT 58.533 33.333 0.00 0.00 40.87 3.06
1362 1687 5.991606 TCGTCCAAGATAATGGCTCTAATTG 59.008 40.000 0.00 0.00 40.46 2.32
1542 1875 2.125512 GCTACACCCCTGCACTCG 60.126 66.667 0.00 0.00 0.00 4.18
1549 1882 4.767255 CCCTGCACTCGTGGCTCC 62.767 72.222 0.00 0.00 0.00 4.70
1576 1909 1.599542 GATCTGTAAACGGCCATGCTC 59.400 52.381 2.24 0.00 0.00 4.26
1612 1947 3.128589 GGTGACTGCAAGAACAAGAACAA 59.871 43.478 0.00 0.00 37.43 2.83
1668 2003 0.321122 CGTGCTCCTTCTTTCAGGCT 60.321 55.000 0.00 0.00 33.35 4.58
1679 2014 1.882623 CTTTCAGGCTGGGTTCTTGAC 59.117 52.381 15.73 0.00 0.00 3.18
1753 2088 1.616628 TTCTTGGGGCCTCCTCTCC 60.617 63.158 0.00 0.00 36.20 3.71
1768 2103 1.680735 CTCTCCTTGAGTGGATCTCCG 59.319 57.143 0.00 0.00 42.12 4.63
1860 2195 3.007398 AGTGGCTCTTCAACAAGTAGGAG 59.993 47.826 0.00 0.00 0.00 3.69
1874 2209 6.456501 ACAAGTAGGAGATGTGTTTACTGAC 58.543 40.000 0.00 0.00 0.00 3.51
1963 5617 4.202202 ACAGATGATTGCAGAGCTAGGTAC 60.202 45.833 0.00 0.00 0.00 3.34
1964 5618 2.871182 TGATTGCAGAGCTAGGTACG 57.129 50.000 0.00 0.00 0.00 3.67
1998 5652 9.766277 CTGAAGAACAAAGCAAATAGAAGTATC 57.234 33.333 0.00 0.00 0.00 2.24
2006 5660 7.439108 AAGCAAATAGAAGTATCCAGGTACT 57.561 36.000 0.00 0.00 43.88 2.73
2043 5697 1.445871 TCAGTGTGATCTGCATGTGC 58.554 50.000 0.00 0.00 42.50 4.57
2044 5698 0.450583 CAGTGTGATCTGCATGTGCC 59.549 55.000 2.07 0.00 41.18 5.01
2045 5699 0.327259 AGTGTGATCTGCATGTGCCT 59.673 50.000 2.07 0.00 41.18 4.75
2046 5700 1.171308 GTGTGATCTGCATGTGCCTT 58.829 50.000 2.07 0.00 41.18 4.35
2058 5731 3.250744 CATGTGCCTTTGAGAGCAAATG 58.749 45.455 1.07 1.07 45.56 2.32
2060 5733 2.694628 TGTGCCTTTGAGAGCAAATGTT 59.305 40.909 0.00 0.00 42.66 2.71
2152 5829 4.056050 GGCATACCTATAAACAGACCACG 58.944 47.826 0.00 0.00 0.00 4.94
2157 5834 2.550978 CTATAAACAGACCACGGCCAG 58.449 52.381 2.24 0.00 0.00 4.85
2233 5910 9.751542 ACTGATCCTCTTATTTTACATAGAACG 57.248 33.333 0.00 0.00 0.00 3.95
2256 5933 6.316390 ACGGAAATGTTATCAAGATTCAGGTC 59.684 38.462 0.00 0.00 0.00 3.85
2291 5968 2.159627 ACGCGAAACAAAGCATCTTAGG 59.840 45.455 15.93 0.00 0.00 2.69
2342 6023 0.831711 GGTTTGAGGGGTGCCAACAT 60.832 55.000 0.00 0.00 0.00 2.71
2384 6065 4.020573 TGCGTCTTATACCCCTATTGGATG 60.021 45.833 0.00 0.00 35.39 3.51
2385 6066 4.623171 GCGTCTTATACCCCTATTGGATGG 60.623 50.000 0.00 0.00 35.39 3.51
2386 6067 4.081087 CGTCTTATACCCCTATTGGATGGG 60.081 50.000 0.00 0.00 45.34 4.00
2392 6073 1.413118 CCCTATTGGATGGGGTTTGC 58.587 55.000 1.45 0.00 45.41 3.68
2393 6074 1.062962 CCCTATTGGATGGGGTTTGCT 60.063 52.381 1.45 0.00 45.41 3.91
2394 6075 2.176798 CCCTATTGGATGGGGTTTGCTA 59.823 50.000 1.45 0.00 45.41 3.49
2395 6076 3.181418 CCCTATTGGATGGGGTTTGCTAT 60.181 47.826 1.45 0.00 45.41 2.97
2396 6077 4.044065 CCCTATTGGATGGGGTTTGCTATA 59.956 45.833 1.45 0.00 45.41 1.31
2397 6078 5.281716 CCCTATTGGATGGGGTTTGCTATAT 60.282 44.000 1.45 0.00 45.41 0.86
2398 6079 5.888161 CCTATTGGATGGGGTTTGCTATATC 59.112 44.000 0.00 0.00 34.57 1.63
2399 6080 5.605540 ATTGGATGGGGTTTGCTATATCT 57.394 39.130 0.00 0.00 0.00 1.98
2400 6081 4.640771 TGGATGGGGTTTGCTATATCTC 57.359 45.455 0.00 0.00 0.00 2.75
2401 6082 3.980022 TGGATGGGGTTTGCTATATCTCA 59.020 43.478 0.00 0.00 0.00 3.27
2402 6083 4.042062 TGGATGGGGTTTGCTATATCTCAG 59.958 45.833 0.00 0.00 0.00 3.35
2403 6084 4.042187 GGATGGGGTTTGCTATATCTCAGT 59.958 45.833 0.00 0.00 0.00 3.41
2404 6085 4.689612 TGGGGTTTGCTATATCTCAGTC 57.310 45.455 0.00 0.00 0.00 3.51
2405 6086 3.069586 TGGGGTTTGCTATATCTCAGTCG 59.930 47.826 0.00 0.00 0.00 4.18
2406 6087 3.321111 GGGGTTTGCTATATCTCAGTCGA 59.679 47.826 0.00 0.00 0.00 4.20
2407 6088 4.299978 GGGTTTGCTATATCTCAGTCGAC 58.700 47.826 7.70 7.70 0.00 4.20
2408 6089 4.038162 GGGTTTGCTATATCTCAGTCGACT 59.962 45.833 13.58 13.58 0.00 4.18
2409 6090 4.979197 GGTTTGCTATATCTCAGTCGACTG 59.021 45.833 34.76 34.76 45.08 3.51
2423 6104 5.704888 CAGTCGACTGAGATTTAGTGAAGT 58.295 41.667 36.73 0.00 46.59 3.01
2424 6105 5.797934 CAGTCGACTGAGATTTAGTGAAGTC 59.202 44.000 36.73 0.00 46.59 3.01
2425 6106 5.708230 AGTCGACTGAGATTTAGTGAAGTCT 59.292 40.000 19.30 0.00 34.54 3.24
2426 6107 6.025280 GTCGACTGAGATTTAGTGAAGTCTC 58.975 44.000 8.70 3.89 44.64 3.36
2432 6113 6.184580 GAGATTTAGTGAAGTCTCAGTCGA 57.815 41.667 5.59 0.00 44.11 4.20
2433 6114 5.945155 AGATTTAGTGAAGTCTCAGTCGAC 58.055 41.667 7.70 7.70 36.58 4.20
2434 6115 3.808116 TTAGTGAAGTCTCAGTCGACG 57.192 47.619 10.46 5.48 38.90 5.12
2435 6116 1.880271 AGTGAAGTCTCAGTCGACGA 58.120 50.000 10.46 9.71 38.90 4.20
2436 6117 1.801771 AGTGAAGTCTCAGTCGACGAG 59.198 52.381 22.92 22.92 38.90 4.18
2437 6118 1.799403 GTGAAGTCTCAGTCGACGAGA 59.201 52.381 25.67 25.67 38.90 4.04
2438 6119 2.417239 GTGAAGTCTCAGTCGACGAGAT 59.583 50.000 29.28 20.40 41.39 2.75
2439 6120 3.075148 TGAAGTCTCAGTCGACGAGATT 58.925 45.455 29.28 25.10 41.39 2.40
2440 6121 4.093115 GTGAAGTCTCAGTCGACGAGATTA 59.907 45.833 29.28 18.68 41.39 1.75
2441 6122 4.330347 TGAAGTCTCAGTCGACGAGATTAG 59.670 45.833 29.28 15.36 41.39 1.73
2442 6123 2.610374 AGTCTCAGTCGACGAGATTAGC 59.390 50.000 29.28 20.91 41.39 3.09
2443 6124 2.610374 GTCTCAGTCGACGAGATTAGCT 59.390 50.000 29.28 3.36 41.39 3.32
2444 6125 2.609916 TCTCAGTCGACGAGATTAGCTG 59.390 50.000 25.67 11.31 34.59 4.24
2445 6126 2.353269 CTCAGTCGACGAGATTAGCTGT 59.647 50.000 23.94 0.00 31.84 4.40
2446 6127 3.528532 TCAGTCGACGAGATTAGCTGTA 58.471 45.455 10.46 0.00 0.00 2.74
2447 6128 3.309138 TCAGTCGACGAGATTAGCTGTAC 59.691 47.826 10.46 0.00 0.00 2.90
2448 6129 2.613133 AGTCGACGAGATTAGCTGTACC 59.387 50.000 10.46 0.00 0.00 3.34
2449 6130 2.353889 GTCGACGAGATTAGCTGTACCA 59.646 50.000 0.00 0.00 0.00 3.25
2450 6131 3.003482 GTCGACGAGATTAGCTGTACCAT 59.997 47.826 0.00 0.00 0.00 3.55
2451 6132 3.630769 TCGACGAGATTAGCTGTACCATT 59.369 43.478 0.00 0.00 0.00 3.16
2452 6133 4.097437 TCGACGAGATTAGCTGTACCATTT 59.903 41.667 0.00 0.00 0.00 2.32
2453 6134 4.207224 CGACGAGATTAGCTGTACCATTTG 59.793 45.833 0.00 0.00 0.00 2.32
2454 6135 3.871594 ACGAGATTAGCTGTACCATTTGC 59.128 43.478 0.00 0.00 0.00 3.68
2455 6136 4.122776 CGAGATTAGCTGTACCATTTGCT 58.877 43.478 0.00 0.00 39.30 3.91
2456 6137 4.572389 CGAGATTAGCTGTACCATTTGCTT 59.428 41.667 0.00 0.00 37.02 3.91
2457 6138 5.065218 CGAGATTAGCTGTACCATTTGCTTT 59.935 40.000 0.00 0.00 37.02 3.51
2458 6139 6.403636 CGAGATTAGCTGTACCATTTGCTTTT 60.404 38.462 0.00 0.00 37.02 2.27
2459 6140 6.624423 AGATTAGCTGTACCATTTGCTTTTG 58.376 36.000 0.00 0.00 37.02 2.44
2474 6155 4.088823 GCTTTTGCTTTGATCGATCTGT 57.911 40.909 25.02 0.00 43.35 3.41
2475 6156 3.850273 GCTTTTGCTTTGATCGATCTGTG 59.150 43.478 25.02 15.21 43.35 3.66
2476 6157 4.614535 GCTTTTGCTTTGATCGATCTGTGT 60.615 41.667 25.02 0.00 43.35 3.72
2477 6158 5.437289 TTTTGCTTTGATCGATCTGTGTT 57.563 34.783 25.02 0.00 0.00 3.32
2478 6159 4.668576 TTGCTTTGATCGATCTGTGTTC 57.331 40.909 25.02 10.52 0.00 3.18
2479 6160 3.930336 TGCTTTGATCGATCTGTGTTCT 58.070 40.909 25.02 0.00 0.00 3.01
2480 6161 3.681417 TGCTTTGATCGATCTGTGTTCTG 59.319 43.478 25.02 8.60 0.00 3.02
2481 6162 3.681897 GCTTTGATCGATCTGTGTTCTGT 59.318 43.478 25.02 0.00 0.00 3.41
2482 6163 4.153117 GCTTTGATCGATCTGTGTTCTGTT 59.847 41.667 25.02 0.00 0.00 3.16
2483 6164 5.596268 TTTGATCGATCTGTGTTCTGTTG 57.404 39.130 25.02 0.00 0.00 3.33
2484 6165 2.995939 TGATCGATCTGTGTTCTGTTGC 59.004 45.455 25.02 0.00 0.00 4.17
2485 6166 1.418373 TCGATCTGTGTTCTGTTGCG 58.582 50.000 0.00 0.00 0.00 4.85
2486 6167 0.179240 CGATCTGTGTTCTGTTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
2487 6168 1.151668 GATCTGTGTTCTGTTGCGCT 58.848 50.000 9.73 0.00 0.00 5.92
2488 6169 0.870393 ATCTGTGTTCTGTTGCGCTG 59.130 50.000 9.73 0.00 0.00 5.18
2489 6170 0.179086 TCTGTGTTCTGTTGCGCTGA 60.179 50.000 9.73 0.00 0.00 4.26
2490 6171 0.870393 CTGTGTTCTGTTGCGCTGAT 59.130 50.000 9.73 0.00 0.00 2.90
2491 6172 0.587768 TGTGTTCTGTTGCGCTGATG 59.412 50.000 9.73 0.00 0.00 3.07
2492 6173 0.588252 GTGTTCTGTTGCGCTGATGT 59.412 50.000 9.73 0.00 0.00 3.06
2493 6174 1.798223 GTGTTCTGTTGCGCTGATGTA 59.202 47.619 9.73 0.00 0.00 2.29
2494 6175 2.416547 GTGTTCTGTTGCGCTGATGTAT 59.583 45.455 9.73 0.00 0.00 2.29
2495 6176 3.073678 TGTTCTGTTGCGCTGATGTATT 58.926 40.909 9.73 0.00 0.00 1.89
2496 6177 3.501828 TGTTCTGTTGCGCTGATGTATTT 59.498 39.130 9.73 0.00 0.00 1.40
2497 6178 4.091424 GTTCTGTTGCGCTGATGTATTTC 58.909 43.478 9.73 0.00 0.00 2.17
2498 6179 3.599343 TCTGTTGCGCTGATGTATTTCT 58.401 40.909 9.73 0.00 0.00 2.52
2499 6180 4.002982 TCTGTTGCGCTGATGTATTTCTT 58.997 39.130 9.73 0.00 0.00 2.52
2500 6181 4.082274 TGTTGCGCTGATGTATTTCTTG 57.918 40.909 9.73 0.00 0.00 3.02
2501 6182 3.501828 TGTTGCGCTGATGTATTTCTTGT 59.498 39.130 9.73 0.00 0.00 3.16
2502 6183 4.091424 GTTGCGCTGATGTATTTCTTGTC 58.909 43.478 9.73 0.00 0.00 3.18
2503 6184 2.677836 TGCGCTGATGTATTTCTTGTCC 59.322 45.455 9.73 0.00 0.00 4.02
2504 6185 2.677836 GCGCTGATGTATTTCTTGTCCA 59.322 45.455 0.00 0.00 0.00 4.02
2505 6186 3.126858 GCGCTGATGTATTTCTTGTCCAA 59.873 43.478 0.00 0.00 0.00 3.53
2506 6187 4.379394 GCGCTGATGTATTTCTTGTCCAAA 60.379 41.667 0.00 0.00 0.00 3.28
2507 6188 5.698832 CGCTGATGTATTTCTTGTCCAAAA 58.301 37.500 0.00 0.00 0.00 2.44
2508 6189 5.569059 CGCTGATGTATTTCTTGTCCAAAAC 59.431 40.000 0.00 0.00 0.00 2.43
2509 6190 5.569059 GCTGATGTATTTCTTGTCCAAAACG 59.431 40.000 0.00 0.00 0.00 3.60
2510 6191 6.627395 TGATGTATTTCTTGTCCAAAACGT 57.373 33.333 0.00 0.00 0.00 3.99
2511 6192 7.572353 GCTGATGTATTTCTTGTCCAAAACGTA 60.572 37.037 0.00 0.00 0.00 3.57
2512 6193 7.577979 TGATGTATTTCTTGTCCAAAACGTAC 58.422 34.615 0.00 0.00 0.00 3.67
2513 6194 7.442969 TGATGTATTTCTTGTCCAAAACGTACT 59.557 33.333 0.00 0.00 0.00 2.73
2514 6195 6.950545 TGTATTTCTTGTCCAAAACGTACTG 58.049 36.000 0.00 0.00 0.00 2.74
2515 6196 4.886247 TTTCTTGTCCAAAACGTACTGG 57.114 40.909 9.13 9.13 0.00 4.00
2516 6197 2.841215 TCTTGTCCAAAACGTACTGGG 58.159 47.619 14.17 0.76 33.19 4.45
2517 6198 1.265905 CTTGTCCAAAACGTACTGGGC 59.734 52.381 12.38 12.38 37.85 5.36
2518 6199 0.470766 TGTCCAAAACGTACTGGGCT 59.529 50.000 18.26 0.00 38.21 5.19
2519 6200 1.134037 TGTCCAAAACGTACTGGGCTT 60.134 47.619 18.26 0.00 38.21 4.35
2520 6201 1.951602 GTCCAAAACGTACTGGGCTTT 59.048 47.619 12.08 0.00 34.32 3.51
2521 6202 1.950909 TCCAAAACGTACTGGGCTTTG 59.049 47.619 14.17 7.61 33.19 2.77
2522 6203 1.679153 CCAAAACGTACTGGGCTTTGT 59.321 47.619 7.77 0.00 0.00 2.83
2523 6204 2.287368 CCAAAACGTACTGGGCTTTGTC 60.287 50.000 7.77 0.00 0.00 3.18
2524 6205 1.601166 AAACGTACTGGGCTTTGTCC 58.399 50.000 0.00 0.00 0.00 4.02
2525 6206 0.250597 AACGTACTGGGCTTTGTCCC 60.251 55.000 0.00 0.00 46.73 4.46
2534 6215 3.365265 CTTTGTCCCAGCGGGCAC 61.365 66.667 8.57 0.00 45.87 5.01
2535 6216 3.850098 CTTTGTCCCAGCGGGCACT 62.850 63.158 8.57 0.00 45.87 4.40
2536 6217 4.641645 TTGTCCCAGCGGGCACTG 62.642 66.667 8.57 0.08 45.87 3.66
2542 6223 4.335647 CAGCGGGCACTGGACCTT 62.336 66.667 0.00 0.00 41.63 3.50
2543 6224 4.021925 AGCGGGCACTGGACCTTC 62.022 66.667 0.00 0.00 41.63 3.46
2544 6225 4.021925 GCGGGCACTGGACCTTCT 62.022 66.667 0.00 0.00 41.63 2.85
2545 6226 2.046892 CGGGCACTGGACCTTCTG 60.047 66.667 0.00 0.00 41.63 3.02
2546 6227 2.360475 GGGCACTGGACCTTCTGC 60.360 66.667 0.00 0.00 40.08 4.26
2547 6228 2.360475 GGCACTGGACCTTCTGCC 60.360 66.667 10.69 10.69 42.41 4.85
2548 6229 2.743928 GCACTGGACCTTCTGCCG 60.744 66.667 0.00 0.00 0.00 5.69
2549 6230 2.743928 CACTGGACCTTCTGCCGC 60.744 66.667 0.00 0.00 0.00 6.53
2550 6231 2.925170 ACTGGACCTTCTGCCGCT 60.925 61.111 0.00 0.00 0.00 5.52
2551 6232 2.435586 CTGGACCTTCTGCCGCTG 60.436 66.667 0.00 0.00 0.00 5.18
2552 6233 4.704833 TGGACCTTCTGCCGCTGC 62.705 66.667 0.00 0.00 38.26 5.25
2561 6242 2.259204 TGCCGCTGCATTGCTTTC 59.741 55.556 10.49 0.00 44.23 2.62
2562 6243 2.507769 GCCGCTGCATTGCTTTCC 60.508 61.111 10.49 0.00 37.47 3.13
2563 6244 2.964174 CCGCTGCATTGCTTTCCA 59.036 55.556 10.49 0.00 0.00 3.53
2564 6245 1.514087 CCGCTGCATTGCTTTCCAT 59.486 52.632 10.49 0.00 0.00 3.41
2565 6246 0.108520 CCGCTGCATTGCTTTCCATT 60.109 50.000 10.49 0.00 0.00 3.16
2566 6247 1.274596 CGCTGCATTGCTTTCCATTC 58.725 50.000 10.49 0.00 0.00 2.67
2567 6248 1.135199 CGCTGCATTGCTTTCCATTCT 60.135 47.619 10.49 0.00 0.00 2.40
2568 6249 2.268298 GCTGCATTGCTTTCCATTCTG 58.732 47.619 10.49 0.00 0.00 3.02
2569 6250 2.888594 CTGCATTGCTTTCCATTCTGG 58.111 47.619 10.49 0.00 39.43 3.86
2570 6251 1.551430 TGCATTGCTTTCCATTCTGGG 59.449 47.619 10.49 0.00 38.32 4.45
2571 6252 1.741394 GCATTGCTTTCCATTCTGGGC 60.741 52.381 0.16 0.00 38.32 5.36
2572 6253 1.134610 CATTGCTTTCCATTCTGGGCC 60.135 52.381 0.00 0.00 38.32 5.80
2573 6254 0.178938 TTGCTTTCCATTCTGGGCCA 60.179 50.000 5.85 5.85 38.32 5.36
2574 6255 0.041535 TGCTTTCCATTCTGGGCCAT 59.958 50.000 6.72 0.00 38.32 4.40
2575 6256 0.462789 GCTTTCCATTCTGGGCCATG 59.537 55.000 6.72 1.81 38.32 3.66
2576 6257 1.117150 CTTTCCATTCTGGGCCATGG 58.883 55.000 17.02 17.02 41.39 3.66
2577 6258 0.325484 TTTCCATTCTGGGCCATGGG 60.325 55.000 21.54 14.02 40.53 4.00
2578 6259 1.517538 TTCCATTCTGGGCCATGGGT 61.518 55.000 21.54 0.30 40.53 4.51
2579 6260 1.002017 CCATTCTGGGCCATGGGTT 59.998 57.895 15.13 0.00 36.96 4.11
2580 6261 1.332144 CCATTCTGGGCCATGGGTTG 61.332 60.000 15.13 6.04 36.96 3.77
2581 6262 0.615544 CATTCTGGGCCATGGGTTGT 60.616 55.000 15.13 0.00 0.00 3.32
2582 6263 0.324645 ATTCTGGGCCATGGGTTGTC 60.325 55.000 15.13 0.00 0.00 3.18
2583 6264 2.751436 CTGGGCCATGGGTTGTCG 60.751 66.667 15.13 0.00 0.00 4.35
2585 6266 4.740822 GGGCCATGGGTTGTCGCT 62.741 66.667 15.13 0.00 0.00 4.93
2586 6267 2.676471 GGCCATGGGTTGTCGCTT 60.676 61.111 15.13 0.00 0.00 4.68
2587 6268 2.568090 GCCATGGGTTGTCGCTTG 59.432 61.111 15.13 0.00 0.00 4.01
2588 6269 2.568090 CCATGGGTTGTCGCTTGC 59.432 61.111 2.85 0.00 32.88 4.01
2589 6270 2.267351 CCATGGGTTGTCGCTTGCA 61.267 57.895 2.85 0.00 32.88 4.08
2590 6271 1.210931 CATGGGTTGTCGCTTGCAG 59.789 57.895 0.00 0.00 0.00 4.41
2591 6272 1.228245 ATGGGTTGTCGCTTGCAGT 60.228 52.632 0.00 0.00 0.00 4.40
2592 6273 0.823356 ATGGGTTGTCGCTTGCAGTT 60.823 50.000 0.00 0.00 0.00 3.16
2593 6274 1.282875 GGGTTGTCGCTTGCAGTTC 59.717 57.895 0.00 0.00 0.00 3.01
2594 6275 1.166531 GGGTTGTCGCTTGCAGTTCT 61.167 55.000 0.00 0.00 0.00 3.01
2595 6276 0.663153 GGTTGTCGCTTGCAGTTCTT 59.337 50.000 0.00 0.00 0.00 2.52
2596 6277 1.597937 GGTTGTCGCTTGCAGTTCTTG 60.598 52.381 0.00 0.00 0.00 3.02
2597 6278 1.330521 GTTGTCGCTTGCAGTTCTTGA 59.669 47.619 0.00 0.00 0.00 3.02
2598 6279 1.882912 TGTCGCTTGCAGTTCTTGAT 58.117 45.000 0.00 0.00 0.00 2.57
2599 6280 3.038788 TGTCGCTTGCAGTTCTTGATA 57.961 42.857 0.00 0.00 0.00 2.15
2600 6281 3.599343 TGTCGCTTGCAGTTCTTGATAT 58.401 40.909 0.00 0.00 0.00 1.63
2601 6282 4.754322 TGTCGCTTGCAGTTCTTGATATA 58.246 39.130 0.00 0.00 0.00 0.86
2602 6283 5.359756 TGTCGCTTGCAGTTCTTGATATAT 58.640 37.500 0.00 0.00 0.00 0.86
2603 6284 5.817296 TGTCGCTTGCAGTTCTTGATATATT 59.183 36.000 0.00 0.00 0.00 1.28
2604 6285 6.316140 TGTCGCTTGCAGTTCTTGATATATTT 59.684 34.615 0.00 0.00 0.00 1.40
2605 6286 7.148255 TGTCGCTTGCAGTTCTTGATATATTTT 60.148 33.333 0.00 0.00 0.00 1.82
2606 6287 7.698130 GTCGCTTGCAGTTCTTGATATATTTTT 59.302 33.333 0.00 0.00 0.00 1.94
2644 6325 9.753674 TTTTATTTTCTCATAGGTCTTCCATGT 57.246 29.630 0.00 0.00 35.89 3.21
2645 6326 8.737168 TTATTTTCTCATAGGTCTTCCATGTG 57.263 34.615 0.00 0.00 35.89 3.21
2646 6327 6.373005 TTTTCTCATAGGTCTTCCATGTGA 57.627 37.500 0.00 0.00 35.89 3.58
2647 6328 6.373005 TTTCTCATAGGTCTTCCATGTGAA 57.627 37.500 0.00 0.00 35.57 3.18
2648 6329 6.566079 TTCTCATAGGTCTTCCATGTGAAT 57.434 37.500 0.00 0.00 34.30 2.57
2649 6330 7.675161 TTCTCATAGGTCTTCCATGTGAATA 57.325 36.000 0.00 0.00 34.30 1.75
2650 6331 7.055667 TCTCATAGGTCTTCCATGTGAATAC 57.944 40.000 0.00 0.00 35.89 1.89
2651 6332 6.611236 TCTCATAGGTCTTCCATGTGAATACA 59.389 38.462 11.67 0.00 41.89 2.29
2653 6334 7.805163 TCATAGGTCTTCCATGTGAATACATT 58.195 34.615 11.67 5.27 45.01 2.71
2654 6335 7.716560 TCATAGGTCTTCCATGTGAATACATTG 59.283 37.037 11.67 0.00 45.01 2.82
2655 6336 5.819991 AGGTCTTCCATGTGAATACATTGT 58.180 37.500 11.67 0.00 45.01 2.71
2656 6337 6.957631 AGGTCTTCCATGTGAATACATTGTA 58.042 36.000 0.00 0.00 45.01 2.41
2657 6338 7.577303 AGGTCTTCCATGTGAATACATTGTAT 58.423 34.615 3.40 3.40 45.01 2.29
2658 6339 8.055181 AGGTCTTCCATGTGAATACATTGTATT 58.945 33.333 19.46 19.46 45.01 1.89
2659 6340 8.686334 GGTCTTCCATGTGAATACATTGTATTT 58.314 33.333 20.14 4.90 45.01 1.40
2700 6381 2.949714 CAAGTGTGCACGGTAAGAAG 57.050 50.000 13.13 0.00 36.20 2.85
2701 6382 1.069906 CAAGTGTGCACGGTAAGAAGC 60.070 52.381 13.13 0.00 36.20 3.86
2702 6383 0.393077 AGTGTGCACGGTAAGAAGCT 59.607 50.000 13.13 0.00 36.20 3.74
2703 6384 0.790814 GTGTGCACGGTAAGAAGCTC 59.209 55.000 13.13 0.00 0.00 4.09
2704 6385 0.391228 TGTGCACGGTAAGAAGCTCA 59.609 50.000 13.13 0.00 0.00 4.26
2705 6386 0.790814 GTGCACGGTAAGAAGCTCAC 59.209 55.000 0.00 0.00 0.00 3.51
2706 6387 0.679505 TGCACGGTAAGAAGCTCACT 59.320 50.000 0.00 0.00 0.00 3.41
2707 6388 1.890489 TGCACGGTAAGAAGCTCACTA 59.110 47.619 0.00 0.00 0.00 2.74
2708 6389 2.094700 TGCACGGTAAGAAGCTCACTAG 60.095 50.000 0.00 0.00 0.00 2.57
2709 6390 2.735762 GCACGGTAAGAAGCTCACTAGG 60.736 54.545 0.00 0.00 0.00 3.02
2710 6391 2.100989 ACGGTAAGAAGCTCACTAGGG 58.899 52.381 0.00 0.00 0.00 3.53
2711 6392 1.202428 CGGTAAGAAGCTCACTAGGGC 60.202 57.143 0.00 0.00 0.00 5.19
2712 6393 1.831736 GGTAAGAAGCTCACTAGGGCA 59.168 52.381 0.00 0.00 0.00 5.36
2713 6394 2.159028 GGTAAGAAGCTCACTAGGGCAG 60.159 54.545 0.00 0.00 0.00 4.85
2714 6395 0.251634 AAGAAGCTCACTAGGGCAGC 59.748 55.000 8.00 8.00 0.00 5.25
2715 6396 0.617249 AGAAGCTCACTAGGGCAGCT 60.617 55.000 11.71 11.71 45.69 4.24
2716 6397 0.179086 GAAGCTCACTAGGGCAGCTC 60.179 60.000 16.19 8.74 42.86 4.09
2717 6398 0.906756 AAGCTCACTAGGGCAGCTCA 60.907 55.000 16.19 0.00 42.86 4.26
2718 6399 1.143620 GCTCACTAGGGCAGCTCAG 59.856 63.158 0.00 0.00 0.00 3.35
2719 6400 1.612395 GCTCACTAGGGCAGCTCAGT 61.612 60.000 0.00 0.00 0.00 3.41
2720 6401 0.901124 CTCACTAGGGCAGCTCAGTT 59.099 55.000 0.00 0.00 0.00 3.16
2721 6402 1.277557 CTCACTAGGGCAGCTCAGTTT 59.722 52.381 0.00 0.00 0.00 2.66
2722 6403 1.002430 TCACTAGGGCAGCTCAGTTTG 59.998 52.381 0.00 0.00 0.00 2.93
2723 6404 1.059913 ACTAGGGCAGCTCAGTTTGT 58.940 50.000 0.00 0.00 0.00 2.83
2724 6405 1.271054 ACTAGGGCAGCTCAGTTTGTG 60.271 52.381 0.00 0.00 0.00 3.33
2725 6406 0.764890 TAGGGCAGCTCAGTTTGTGT 59.235 50.000 0.00 0.00 0.00 3.72
2726 6407 0.764890 AGGGCAGCTCAGTTTGTGTA 59.235 50.000 0.00 0.00 0.00 2.90
2727 6408 1.352352 AGGGCAGCTCAGTTTGTGTAT 59.648 47.619 0.00 0.00 0.00 2.29
2728 6409 2.162681 GGGCAGCTCAGTTTGTGTATT 58.837 47.619 0.00 0.00 0.00 1.89
2729 6410 2.162408 GGGCAGCTCAGTTTGTGTATTC 59.838 50.000 0.00 0.00 0.00 1.75
2730 6411 2.813754 GGCAGCTCAGTTTGTGTATTCA 59.186 45.455 0.00 0.00 0.00 2.57
2731 6412 3.365364 GGCAGCTCAGTTTGTGTATTCAC 60.365 47.826 0.00 0.00 44.08 3.18
2732 6413 3.665323 GCAGCTCAGTTTGTGTATTCACG 60.665 47.826 0.00 0.00 46.49 4.35
2733 6414 3.494626 CAGCTCAGTTTGTGTATTCACGT 59.505 43.478 0.00 0.00 46.49 4.49
2734 6415 3.741344 AGCTCAGTTTGTGTATTCACGTC 59.259 43.478 0.00 0.00 46.49 4.34
2735 6416 3.741344 GCTCAGTTTGTGTATTCACGTCT 59.259 43.478 0.00 0.00 46.49 4.18
2736 6417 4.921515 GCTCAGTTTGTGTATTCACGTCTA 59.078 41.667 0.00 0.00 46.49 2.59
2737 6418 5.164080 GCTCAGTTTGTGTATTCACGTCTAC 60.164 44.000 0.00 0.00 46.49 2.59
2738 6419 6.080648 TCAGTTTGTGTATTCACGTCTACT 57.919 37.500 0.00 0.00 46.49 2.57
2739 6420 6.509656 TCAGTTTGTGTATTCACGTCTACTT 58.490 36.000 0.00 0.00 46.49 2.24
2740 6421 6.982141 TCAGTTTGTGTATTCACGTCTACTTT 59.018 34.615 0.00 0.00 46.49 2.66
2741 6422 7.493320 TCAGTTTGTGTATTCACGTCTACTTTT 59.507 33.333 0.00 0.00 46.49 2.27
2742 6423 8.757789 CAGTTTGTGTATTCACGTCTACTTTTA 58.242 33.333 0.00 0.00 46.49 1.52
2743 6424 9.485206 AGTTTGTGTATTCACGTCTACTTTTAT 57.515 29.630 0.00 0.00 46.49 1.40
2746 6427 9.701098 TTGTGTATTCACGTCTACTTTTATTCT 57.299 29.630 0.00 0.00 46.49 2.40
2747 6428 9.701098 TGTGTATTCACGTCTACTTTTATTCTT 57.299 29.630 0.00 0.00 46.49 2.52
2749 6430 9.362539 TGTATTCACGTCTACTTTTATTCTTCC 57.637 33.333 0.00 0.00 0.00 3.46
2750 6431 9.583765 GTATTCACGTCTACTTTTATTCTTCCT 57.416 33.333 0.00 0.00 0.00 3.36
2752 6433 8.897872 TTCACGTCTACTTTTATTCTTCCTTT 57.102 30.769 0.00 0.00 0.00 3.11
2753 6434 8.897872 TCACGTCTACTTTTATTCTTCCTTTT 57.102 30.769 0.00 0.00 0.00 2.27
2754 6435 9.333724 TCACGTCTACTTTTATTCTTCCTTTTT 57.666 29.630 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.253188 GCTGCACTCATTTTAACAGGACA 59.747 43.478 0.00 0.00 0.00 4.02
231 232 0.478072 AACCCAGGTTGATGCAGACA 59.522 50.000 0.07 0.00 36.91 3.41
233 234 2.419990 CGATAACCCAGGTTGATGCAGA 60.420 50.000 12.41 0.00 38.92 4.26
234 235 1.942657 CGATAACCCAGGTTGATGCAG 59.057 52.381 12.41 0.00 38.92 4.41
235 236 1.557371 TCGATAACCCAGGTTGATGCA 59.443 47.619 12.41 0.00 38.92 3.96
305 613 3.377485 GTCAGACGCCAACTAGATAGTCA 59.623 47.826 0.00 0.00 34.99 3.41
409 717 0.036388 CTAAGCTCTTCCACGCCCAA 60.036 55.000 0.00 0.00 0.00 4.12
523 831 0.882927 TTTGTTTGGGCCTCGTCTCG 60.883 55.000 4.53 0.00 0.00 4.04
548 856 0.823460 GCAGGAGACTTAGCTGCTCT 59.177 55.000 4.91 0.00 40.21 4.09
555 863 0.037326 TTGTGGCGCAGGAGACTTAG 60.037 55.000 10.83 0.00 40.21 2.18
759 1068 0.846693 GCATCTACCTCACCCCCATT 59.153 55.000 0.00 0.00 0.00 3.16
763 1072 1.282157 ACAAAGCATCTACCTCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
764 1073 2.027192 TCACAAAGCATCTACCTCACCC 60.027 50.000 0.00 0.00 0.00 4.61
765 1074 3.334583 TCACAAAGCATCTACCTCACC 57.665 47.619 0.00 0.00 0.00 4.02
766 1075 5.182001 ACAAATCACAAAGCATCTACCTCAC 59.818 40.000 0.00 0.00 0.00 3.51
767 1076 5.181811 CACAAATCACAAAGCATCTACCTCA 59.818 40.000 0.00 0.00 0.00 3.86
768 1077 5.412594 TCACAAATCACAAAGCATCTACCTC 59.587 40.000 0.00 0.00 0.00 3.85
769 1078 5.316167 TCACAAATCACAAAGCATCTACCT 58.684 37.500 0.00 0.00 0.00 3.08
770 1079 5.627499 TCACAAATCACAAAGCATCTACC 57.373 39.130 0.00 0.00 0.00 3.18
771 1080 6.034256 GCATTCACAAATCACAAAGCATCTAC 59.966 38.462 0.00 0.00 0.00 2.59
772 1081 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
773 1082 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
774 1083 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
775 1084 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
776 1085 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
777 1086 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
778 1087 3.426191 CGTGGCATTCACAAATCACAAAG 59.574 43.478 0.00 0.00 46.36 2.77
779 1088 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
780 1089 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
781 1090 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
782 1091 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
783 1092 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
784 1093 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
785 1094 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
786 1095 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
787 1096 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
788 1097 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
789 1098 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
790 1099 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
791 1100 1.331756 GATGGATGACACGTGGCATTC 59.668 52.381 36.07 34.16 45.42 2.67
792 1101 1.339920 TGATGGATGACACGTGGCATT 60.340 47.619 36.07 22.11 45.42 3.56
794 1103 0.391528 CTGATGGATGACACGTGGCA 60.392 55.000 29.28 29.28 37.54 4.92
795 1104 1.091771 CCTGATGGATGACACGTGGC 61.092 60.000 21.57 19.24 34.57 5.01
796 1105 0.536724 TCCTGATGGATGACACGTGG 59.463 55.000 21.57 1.66 37.46 4.94
808 1117 2.550423 GCAGGTGAGATCCATCCTGATG 60.550 54.545 23.17 0.00 42.00 3.07
809 1118 1.698532 GCAGGTGAGATCCATCCTGAT 59.301 52.381 23.17 0.00 42.00 2.90
810 1119 1.126488 GCAGGTGAGATCCATCCTGA 58.874 55.000 23.17 0.00 42.00 3.86
811 1120 1.129917 AGCAGGTGAGATCCATCCTG 58.870 55.000 17.81 17.81 42.17 3.86
812 1121 2.703007 GTTAGCAGGTGAGATCCATCCT 59.297 50.000 0.00 0.00 0.00 3.24
813 1122 2.224402 GGTTAGCAGGTGAGATCCATCC 60.224 54.545 0.00 0.00 0.00 3.51
814 1123 2.224402 GGGTTAGCAGGTGAGATCCATC 60.224 54.545 0.00 0.00 0.00 3.51
815 1124 1.771255 GGGTTAGCAGGTGAGATCCAT 59.229 52.381 0.00 0.00 0.00 3.41
816 1125 1.204146 GGGTTAGCAGGTGAGATCCA 58.796 55.000 0.00 0.00 0.00 3.41
817 1126 0.105039 CGGGTTAGCAGGTGAGATCC 59.895 60.000 0.00 0.00 0.00 3.36
818 1127 0.824759 ACGGGTTAGCAGGTGAGATC 59.175 55.000 0.00 0.00 0.00 2.75
819 1128 0.537188 CACGGGTTAGCAGGTGAGAT 59.463 55.000 0.00 0.00 32.23 2.75
820 1129 0.541063 TCACGGGTTAGCAGGTGAGA 60.541 55.000 3.98 0.00 34.71 3.27
821 1130 1.972198 TCACGGGTTAGCAGGTGAG 59.028 57.895 3.98 0.00 34.71 3.51
822 1131 0.541063 TCTCACGGGTTAGCAGGTGA 60.541 55.000 7.19 7.19 37.77 4.02
823 1132 0.389948 GTCTCACGGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
824 1133 0.542232 AGTCTCACGGGTTAGCAGGT 60.542 55.000 0.00 0.00 0.00 4.00
825 1134 0.608640 AAGTCTCACGGGTTAGCAGG 59.391 55.000 0.00 0.00 0.00 4.85
826 1135 1.673033 CCAAGTCTCACGGGTTAGCAG 60.673 57.143 0.00 0.00 0.00 4.24
827 1136 0.320374 CCAAGTCTCACGGGTTAGCA 59.680 55.000 0.00 0.00 0.00 3.49
828 1137 0.320697 ACCAAGTCTCACGGGTTAGC 59.679 55.000 0.00 0.00 28.55 3.09
829 1138 1.893801 AGACCAAGTCTCACGGGTTAG 59.106 52.381 0.00 0.00 38.71 2.34
830 1139 2.005370 AGACCAAGTCTCACGGGTTA 57.995 50.000 0.00 0.00 38.71 2.85
831 1140 2.836020 AGACCAAGTCTCACGGGTT 58.164 52.632 0.00 0.00 38.71 4.11
832 1141 4.621269 AGACCAAGTCTCACGGGT 57.379 55.556 0.00 0.00 38.71 5.28
839 1148 7.764901 GGAAAATAATTCTACGAGACCAAGTCT 59.235 37.037 0.00 0.00 46.42 3.24
840 1149 7.764901 AGGAAAATAATTCTACGAGACCAAGTC 59.235 37.037 0.00 0.00 0.00 3.01
841 1150 7.621796 AGGAAAATAATTCTACGAGACCAAGT 58.378 34.615 0.00 0.00 0.00 3.16
842 1151 8.494016 AAGGAAAATAATTCTACGAGACCAAG 57.506 34.615 0.00 0.00 0.00 3.61
843 1152 8.857694 AAAGGAAAATAATTCTACGAGACCAA 57.142 30.769 0.00 0.00 0.00 3.67
844 1153 8.726988 CAAAAGGAAAATAATTCTACGAGACCA 58.273 33.333 0.00 0.00 0.00 4.02
845 1154 8.182227 CCAAAAGGAAAATAATTCTACGAGACC 58.818 37.037 0.00 0.00 0.00 3.85
846 1155 8.182227 CCCAAAAGGAAAATAATTCTACGAGAC 58.818 37.037 0.00 0.00 38.24 3.36
847 1156 7.886446 ACCCAAAAGGAAAATAATTCTACGAGA 59.114 33.333 0.00 0.00 39.89 4.04
848 1157 8.051901 ACCCAAAAGGAAAATAATTCTACGAG 57.948 34.615 0.00 0.00 39.89 4.18
849 1158 7.666388 TGACCCAAAAGGAAAATAATTCTACGA 59.334 33.333 0.00 0.00 39.89 3.43
850 1159 7.822658 TGACCCAAAAGGAAAATAATTCTACG 58.177 34.615 0.00 0.00 39.89 3.51
877 1186 2.099427 CGAAAACGACCCAAGGGAAAAA 59.901 45.455 13.15 0.00 38.96 1.94
878 1187 1.677052 CGAAAACGACCCAAGGGAAAA 59.323 47.619 13.15 0.00 38.96 2.29
879 1188 1.310904 CGAAAACGACCCAAGGGAAA 58.689 50.000 13.15 0.00 38.96 3.13
880 1189 0.180878 ACGAAAACGACCCAAGGGAA 59.819 50.000 13.15 0.00 38.96 3.97
881 1190 0.533308 CACGAAAACGACCCAAGGGA 60.533 55.000 13.15 0.00 38.96 4.20
882 1191 0.816421 ACACGAAAACGACCCAAGGG 60.816 55.000 2.91 2.91 42.03 3.95
883 1192 0.584876 GACACGAAAACGACCCAAGG 59.415 55.000 0.00 0.00 0.00 3.61
884 1193 0.584876 GGACACGAAAACGACCCAAG 59.415 55.000 0.00 0.00 0.00 3.61
885 1194 1.152989 CGGACACGAAAACGACCCAA 61.153 55.000 0.00 0.00 44.60 4.12
886 1195 1.592131 CGGACACGAAAACGACCCA 60.592 57.895 0.00 0.00 44.60 4.51
914 1223 0.174389 TCAGATGGAGCGTGAAGAGC 59.826 55.000 0.00 0.00 0.00 4.09
1078 1394 3.703127 GCCGGGGAGGACGTTCTT 61.703 66.667 2.18 0.00 45.00 2.52
1362 1687 3.187700 CAACTGGATACACTAACCGAGC 58.812 50.000 0.00 0.00 46.17 5.03
1549 1882 1.631072 CGTTTACAGATCGCGGCAG 59.369 57.895 6.13 0.00 0.00 4.85
1553 1886 1.151777 ATGGCCGTTTACAGATCGCG 61.152 55.000 0.00 0.00 0.00 5.87
1576 1909 1.004044 AGTCACCAATGCAGGAGAAGG 59.996 52.381 0.00 0.00 29.93 3.46
1668 2003 1.070786 GCTCGGTGTCAAGAACCCA 59.929 57.895 0.00 0.00 33.88 4.51
1697 2032 3.748083 GCCAAGAAGCATCTCCATGATA 58.252 45.455 0.00 0.00 33.77 2.15
1753 2088 4.558496 GCTAATCTCGGAGATCCACTCAAG 60.558 50.000 20.15 10.29 46.54 3.02
1768 2103 4.579869 TCCACAAGTTTCAGGCTAATCTC 58.420 43.478 0.00 0.00 0.00 2.75
1860 2195 7.323656 GTGCTAAACAATGTCAGTAAACACATC 59.676 37.037 0.00 0.00 31.79 3.06
1874 2209 5.463286 TCATTTGCTCTGTGCTAAACAATG 58.537 37.500 3.20 4.70 43.37 2.82
1894 2230 1.261480 CCTAGCTCACCCGCTATCAT 58.739 55.000 0.00 0.00 41.31 2.45
1898 2234 0.841961 TAGACCTAGCTCACCCGCTA 59.158 55.000 0.00 0.00 41.30 4.26
2043 5697 4.572985 TGTGAACATTTGCTCTCAAAGG 57.427 40.909 1.56 1.56 46.12 3.11
2044 5698 5.981315 ACATTGTGAACATTTGCTCTCAAAG 59.019 36.000 3.47 2.51 44.47 2.77
2045 5699 5.904941 ACATTGTGAACATTTGCTCTCAAA 58.095 33.333 3.47 0.00 45.24 2.69
2046 5700 5.300034 AGACATTGTGAACATTTGCTCTCAA 59.700 36.000 0.00 2.17 31.20 3.02
2152 5829 5.047377 TGTTGTAATTTCCTGAATTCTGGCC 60.047 40.000 22.96 0.00 38.80 5.36
2233 5910 6.238484 CGGACCTGAATCTTGATAACATTTCC 60.238 42.308 0.00 0.00 0.00 3.13
2278 5955 3.307242 GTCTACGTGCCTAAGATGCTTTG 59.693 47.826 0.00 0.00 0.00 2.77
2291 5968 2.623889 AGACCTATCCATGTCTACGTGC 59.376 50.000 0.00 0.00 39.96 5.34
2342 6023 4.171005 CGCACTTTCAAAGGTAGATCGTA 58.829 43.478 1.31 0.00 0.00 3.43
2384 6065 3.321111 TCGACTGAGATATAGCAAACCCC 59.679 47.826 0.00 0.00 0.00 4.95
2385 6066 4.038162 AGTCGACTGAGATATAGCAAACCC 59.962 45.833 19.30 0.00 0.00 4.11
2386 6067 4.979197 CAGTCGACTGAGATATAGCAAACC 59.021 45.833 36.73 0.00 46.59 3.27
2400 6081 5.704888 ACTTCACTAAATCTCAGTCGACTG 58.295 41.667 34.76 34.76 45.08 3.51
2401 6082 5.708230 AGACTTCACTAAATCTCAGTCGACT 59.292 40.000 13.58 13.58 36.56 4.18
2402 6083 5.945155 AGACTTCACTAAATCTCAGTCGAC 58.055 41.667 7.70 7.70 36.56 4.20
2403 6084 5.705905 TGAGACTTCACTAAATCTCAGTCGA 59.294 40.000 0.00 0.00 41.99 4.20
2404 6085 5.944013 TGAGACTTCACTAAATCTCAGTCG 58.056 41.667 0.00 0.00 41.99 4.18
2408 6089 5.705905 TCGACTGAGACTTCACTAAATCTCA 59.294 40.000 3.03 3.03 44.05 3.27
2409 6090 6.025280 GTCGACTGAGACTTCACTAAATCTC 58.975 44.000 8.70 0.00 38.09 2.75
2410 6091 5.391097 CGTCGACTGAGACTTCACTAAATCT 60.391 44.000 14.70 0.00 38.90 2.40
2411 6092 4.789119 CGTCGACTGAGACTTCACTAAATC 59.211 45.833 14.70 0.00 38.90 2.17
2412 6093 4.454847 TCGTCGACTGAGACTTCACTAAAT 59.545 41.667 14.70 0.00 38.90 1.40
2413 6094 3.811497 TCGTCGACTGAGACTTCACTAAA 59.189 43.478 14.70 0.00 38.90 1.85
2414 6095 3.396560 TCGTCGACTGAGACTTCACTAA 58.603 45.455 14.70 0.00 38.90 2.24
2415 6096 2.994578 CTCGTCGACTGAGACTTCACTA 59.005 50.000 23.94 0.00 38.90 2.74
2416 6097 1.801771 CTCGTCGACTGAGACTTCACT 59.198 52.381 23.94 0.00 38.90 3.41
2417 6098 1.799403 TCTCGTCGACTGAGACTTCAC 59.201 52.381 25.67 0.00 37.55 3.18
2418 6099 2.165319 TCTCGTCGACTGAGACTTCA 57.835 50.000 25.67 11.54 37.55 3.02
2419 6100 3.750639 AATCTCGTCGACTGAGACTTC 57.249 47.619 29.25 0.00 44.69 3.01
2420 6101 3.064271 GCTAATCTCGTCGACTGAGACTT 59.936 47.826 29.25 25.02 44.69 3.01
2421 6102 2.610374 GCTAATCTCGTCGACTGAGACT 59.390 50.000 29.25 24.39 44.69 3.24
2422 6103 2.610374 AGCTAATCTCGTCGACTGAGAC 59.390 50.000 29.25 20.78 44.69 3.36
2423 6104 2.609916 CAGCTAATCTCGTCGACTGAGA 59.390 50.000 28.99 28.99 45.84 3.27
2424 6105 2.353269 ACAGCTAATCTCGTCGACTGAG 59.647 50.000 22.92 22.92 34.72 3.35
2425 6106 2.357075 ACAGCTAATCTCGTCGACTGA 58.643 47.619 14.70 11.94 0.00 3.41
2426 6107 2.834574 ACAGCTAATCTCGTCGACTG 57.165 50.000 14.70 7.51 0.00 3.51
2427 6108 2.613133 GGTACAGCTAATCTCGTCGACT 59.387 50.000 14.70 0.00 0.00 4.18
2428 6109 2.353889 TGGTACAGCTAATCTCGTCGAC 59.646 50.000 5.18 5.18 0.00 4.20
2429 6110 2.635714 TGGTACAGCTAATCTCGTCGA 58.364 47.619 0.00 0.00 0.00 4.20
2444 6125 5.164061 CGATCAAAGCAAAAGCAAATGGTAC 60.164 40.000 0.00 0.00 0.00 3.34
2445 6126 4.922692 CGATCAAAGCAAAAGCAAATGGTA 59.077 37.500 0.00 0.00 0.00 3.25
2446 6127 3.742369 CGATCAAAGCAAAAGCAAATGGT 59.258 39.130 0.00 0.00 0.00 3.55
2447 6128 3.989167 TCGATCAAAGCAAAAGCAAATGG 59.011 39.130 0.00 0.00 0.00 3.16
2448 6129 5.575606 AGATCGATCAAAGCAAAAGCAAATG 59.424 36.000 26.47 0.00 0.00 2.32
2449 6130 5.575606 CAGATCGATCAAAGCAAAAGCAAAT 59.424 36.000 26.47 0.00 0.00 2.32
2450 6131 4.919168 CAGATCGATCAAAGCAAAAGCAAA 59.081 37.500 26.47 0.00 0.00 3.68
2451 6132 4.022935 ACAGATCGATCAAAGCAAAAGCAA 60.023 37.500 26.47 0.00 0.00 3.91
2452 6133 3.503363 ACAGATCGATCAAAGCAAAAGCA 59.497 39.130 26.47 0.00 0.00 3.91
2453 6134 3.850273 CACAGATCGATCAAAGCAAAAGC 59.150 43.478 26.47 0.00 0.00 3.51
2454 6135 5.039480 ACACAGATCGATCAAAGCAAAAG 57.961 39.130 26.47 8.45 0.00 2.27
2455 6136 5.239306 AGAACACAGATCGATCAAAGCAAAA 59.761 36.000 26.47 0.00 0.00 2.44
2456 6137 4.756642 AGAACACAGATCGATCAAAGCAAA 59.243 37.500 26.47 0.00 0.00 3.68
2457 6138 4.152938 CAGAACACAGATCGATCAAAGCAA 59.847 41.667 26.47 0.00 0.00 3.91
2458 6139 3.681417 CAGAACACAGATCGATCAAAGCA 59.319 43.478 26.47 0.00 0.00 3.91
2459 6140 3.681897 ACAGAACACAGATCGATCAAAGC 59.318 43.478 26.47 10.77 0.00 3.51
2460 6141 5.615708 CAACAGAACACAGATCGATCAAAG 58.384 41.667 26.47 17.45 0.00 2.77
2461 6142 4.083855 GCAACAGAACACAGATCGATCAAA 60.084 41.667 26.47 0.00 0.00 2.69
2462 6143 3.433274 GCAACAGAACACAGATCGATCAA 59.567 43.478 26.47 0.00 0.00 2.57
2463 6144 2.995939 GCAACAGAACACAGATCGATCA 59.004 45.455 26.47 0.00 0.00 2.92
2464 6145 2.028523 CGCAACAGAACACAGATCGATC 59.971 50.000 17.91 17.91 0.00 3.69
2465 6146 1.995484 CGCAACAGAACACAGATCGAT 59.005 47.619 0.00 0.00 0.00 3.59
2466 6147 1.418373 CGCAACAGAACACAGATCGA 58.582 50.000 0.00 0.00 0.00 3.59
2467 6148 0.179240 GCGCAACAGAACACAGATCG 60.179 55.000 0.30 0.00 0.00 3.69
2468 6149 1.136141 CAGCGCAACAGAACACAGATC 60.136 52.381 11.47 0.00 0.00 2.75
2469 6150 0.870393 CAGCGCAACAGAACACAGAT 59.130 50.000 11.47 0.00 0.00 2.90
2470 6151 0.179086 TCAGCGCAACAGAACACAGA 60.179 50.000 11.47 0.00 0.00 3.41
2471 6152 0.870393 ATCAGCGCAACAGAACACAG 59.130 50.000 11.47 0.00 0.00 3.66
2472 6153 0.587768 CATCAGCGCAACAGAACACA 59.412 50.000 11.47 0.00 0.00 3.72
2473 6154 0.588252 ACATCAGCGCAACAGAACAC 59.412 50.000 11.47 0.00 0.00 3.32
2474 6155 2.162319 TACATCAGCGCAACAGAACA 57.838 45.000 11.47 0.00 0.00 3.18
2475 6156 3.747099 AATACATCAGCGCAACAGAAC 57.253 42.857 11.47 0.00 0.00 3.01
2476 6157 4.002982 AGAAATACATCAGCGCAACAGAA 58.997 39.130 11.47 0.00 0.00 3.02
2477 6158 3.599343 AGAAATACATCAGCGCAACAGA 58.401 40.909 11.47 1.66 0.00 3.41
2478 6159 4.093514 CAAGAAATACATCAGCGCAACAG 58.906 43.478 11.47 0.00 0.00 3.16
2479 6160 3.501828 ACAAGAAATACATCAGCGCAACA 59.498 39.130 11.47 0.00 0.00 3.33
2480 6161 4.083581 ACAAGAAATACATCAGCGCAAC 57.916 40.909 11.47 0.00 0.00 4.17
2481 6162 3.126858 GGACAAGAAATACATCAGCGCAA 59.873 43.478 11.47 0.00 0.00 4.85
2482 6163 2.677836 GGACAAGAAATACATCAGCGCA 59.322 45.455 11.47 0.00 0.00 6.09
2483 6164 2.677836 TGGACAAGAAATACATCAGCGC 59.322 45.455 0.00 0.00 0.00 5.92
2484 6165 4.944962 TTGGACAAGAAATACATCAGCG 57.055 40.909 0.00 0.00 0.00 5.18
2485 6166 5.569059 CGTTTTGGACAAGAAATACATCAGC 59.431 40.000 0.00 0.00 0.00 4.26
2486 6167 6.668323 ACGTTTTGGACAAGAAATACATCAG 58.332 36.000 0.00 0.00 0.00 2.90
2487 6168 6.627395 ACGTTTTGGACAAGAAATACATCA 57.373 33.333 0.00 0.00 0.00 3.07
2488 6169 7.744715 CAGTACGTTTTGGACAAGAAATACATC 59.255 37.037 0.00 0.00 0.00 3.06
2489 6170 7.308348 CCAGTACGTTTTGGACAAGAAATACAT 60.308 37.037 11.46 0.00 36.55 2.29
2490 6171 6.017770 CCAGTACGTTTTGGACAAGAAATACA 60.018 38.462 11.46 0.00 36.55 2.29
2491 6172 6.368213 CCAGTACGTTTTGGACAAGAAATAC 58.632 40.000 11.46 0.00 36.55 1.89
2492 6173 5.470777 CCCAGTACGTTTTGGACAAGAAATA 59.529 40.000 16.95 0.00 36.55 1.40
2493 6174 4.277423 CCCAGTACGTTTTGGACAAGAAAT 59.723 41.667 16.95 0.00 36.55 2.17
2494 6175 3.628487 CCCAGTACGTTTTGGACAAGAAA 59.372 43.478 16.95 0.00 36.55 2.52
2495 6176 3.207778 CCCAGTACGTTTTGGACAAGAA 58.792 45.455 16.95 0.00 36.55 2.52
2496 6177 2.841215 CCCAGTACGTTTTGGACAAGA 58.159 47.619 16.95 0.00 36.55 3.02
2497 6178 1.265905 GCCCAGTACGTTTTGGACAAG 59.734 52.381 16.95 4.29 36.55 3.16
2498 6179 1.134037 AGCCCAGTACGTTTTGGACAA 60.134 47.619 16.95 0.00 36.55 3.18
2499 6180 0.470766 AGCCCAGTACGTTTTGGACA 59.529 50.000 16.95 0.00 36.55 4.02
2500 6181 1.601166 AAGCCCAGTACGTTTTGGAC 58.399 50.000 16.95 7.70 36.55 4.02
2501 6182 1.950909 CAAAGCCCAGTACGTTTTGGA 59.049 47.619 16.95 0.00 36.55 3.53
2502 6183 1.679153 ACAAAGCCCAGTACGTTTTGG 59.321 47.619 10.24 10.24 34.07 3.28
2503 6184 2.287368 GGACAAAGCCCAGTACGTTTTG 60.287 50.000 0.00 0.00 35.47 2.44
2504 6185 1.951602 GGACAAAGCCCAGTACGTTTT 59.048 47.619 0.00 0.00 0.00 2.43
2505 6186 1.601166 GGACAAAGCCCAGTACGTTT 58.399 50.000 0.00 0.00 0.00 3.60
2506 6187 3.317449 GGACAAAGCCCAGTACGTT 57.683 52.632 0.00 0.00 0.00 3.99
2525 6206 4.335647 AAGGTCCAGTGCCCGCTG 62.336 66.667 1.94 1.94 36.31 5.18
2526 6207 4.021925 GAAGGTCCAGTGCCCGCT 62.022 66.667 0.00 0.00 0.00 5.52
2527 6208 4.021925 AGAAGGTCCAGTGCCCGC 62.022 66.667 0.00 0.00 0.00 6.13
2528 6209 2.046892 CAGAAGGTCCAGTGCCCG 60.047 66.667 0.00 0.00 0.00 6.13
2529 6210 2.360475 GCAGAAGGTCCAGTGCCC 60.360 66.667 0.00 0.00 0.00 5.36
2531 6212 2.743928 CGGCAGAAGGTCCAGTGC 60.744 66.667 0.00 0.00 35.07 4.40
2532 6213 2.743928 GCGGCAGAAGGTCCAGTG 60.744 66.667 0.00 0.00 0.00 3.66
2533 6214 2.925170 AGCGGCAGAAGGTCCAGT 60.925 61.111 1.45 0.00 0.00 4.00
2534 6215 2.435586 CAGCGGCAGAAGGTCCAG 60.436 66.667 1.45 0.00 0.00 3.86
2535 6216 4.704833 GCAGCGGCAGAAGGTCCA 62.705 66.667 3.18 0.00 40.72 4.02
2545 6226 2.507769 GGAAAGCAATGCAGCGGC 60.508 61.111 8.35 0.31 40.15 6.53
2546 6227 0.108520 AATGGAAAGCAATGCAGCGG 60.109 50.000 8.35 0.00 40.15 5.52
2547 6228 1.135199 AGAATGGAAAGCAATGCAGCG 60.135 47.619 8.35 0.00 40.15 5.18
2548 6229 2.268298 CAGAATGGAAAGCAATGCAGC 58.732 47.619 8.35 0.00 0.00 5.25
2562 6243 0.615544 ACAACCCATGGCCCAGAATG 60.616 55.000 6.09 0.00 0.00 2.67
2563 6244 0.324645 GACAACCCATGGCCCAGAAT 60.325 55.000 6.09 0.00 0.00 2.40
2564 6245 1.076549 GACAACCCATGGCCCAGAA 59.923 57.895 6.09 0.00 0.00 3.02
2565 6246 2.763215 GACAACCCATGGCCCAGA 59.237 61.111 6.09 0.00 0.00 3.86
2566 6247 2.751436 CGACAACCCATGGCCCAG 60.751 66.667 6.09 0.00 31.01 4.45
2568 6249 4.740822 AGCGACAACCCATGGCCC 62.741 66.667 6.09 0.00 31.01 5.80
2569 6250 2.676471 AAGCGACAACCCATGGCC 60.676 61.111 6.09 0.00 31.01 5.36
2570 6251 2.568090 CAAGCGACAACCCATGGC 59.432 61.111 6.09 0.00 0.00 4.40
2571 6252 2.203972 CTGCAAGCGACAACCCATGG 62.204 60.000 4.14 4.14 0.00 3.66
2572 6253 1.210931 CTGCAAGCGACAACCCATG 59.789 57.895 0.00 0.00 0.00 3.66
2573 6254 0.823356 AACTGCAAGCGACAACCCAT 60.823 50.000 0.00 0.00 37.60 4.00
2574 6255 1.444119 GAACTGCAAGCGACAACCCA 61.444 55.000 0.00 0.00 37.60 4.51
2575 6256 1.166531 AGAACTGCAAGCGACAACCC 61.167 55.000 0.00 0.00 37.60 4.11
2576 6257 0.663153 AAGAACTGCAAGCGACAACC 59.337 50.000 0.00 0.00 37.60 3.77
2577 6258 1.330521 TCAAGAACTGCAAGCGACAAC 59.669 47.619 0.00 0.00 37.60 3.32
2578 6259 1.662517 TCAAGAACTGCAAGCGACAA 58.337 45.000 0.00 0.00 37.60 3.18
2579 6260 1.882912 ATCAAGAACTGCAAGCGACA 58.117 45.000 0.00 0.00 37.60 4.35
2580 6261 5.914085 ATATATCAAGAACTGCAAGCGAC 57.086 39.130 0.00 0.00 37.60 5.19
2581 6262 6.925610 AAATATATCAAGAACTGCAAGCGA 57.074 33.333 0.00 0.00 37.60 4.93
2582 6263 7.975866 AAAAATATATCAAGAACTGCAAGCG 57.024 32.000 0.00 0.00 37.60 4.68
2618 6299 9.753674 ACATGGAAGACCTATGAGAAAATAAAA 57.246 29.630 0.00 0.00 37.04 1.52
2619 6300 9.177608 CACATGGAAGACCTATGAGAAAATAAA 57.822 33.333 0.00 0.00 37.04 1.40
2620 6301 8.548025 TCACATGGAAGACCTATGAGAAAATAA 58.452 33.333 0.00 0.00 37.04 1.40
2621 6302 8.089625 TCACATGGAAGACCTATGAGAAAATA 57.910 34.615 0.00 0.00 37.04 1.40
2622 6303 6.962182 TCACATGGAAGACCTATGAGAAAAT 58.038 36.000 0.00 0.00 37.04 1.82
2623 6304 6.373005 TCACATGGAAGACCTATGAGAAAA 57.627 37.500 0.00 0.00 37.04 2.29
2624 6305 6.373005 TTCACATGGAAGACCTATGAGAAA 57.627 37.500 0.00 0.00 34.82 2.52
2625 6306 6.566079 ATTCACATGGAAGACCTATGAGAA 57.434 37.500 0.00 0.00 39.30 2.87
2626 6307 6.611236 TGTATTCACATGGAAGACCTATGAGA 59.389 38.462 14.86 0.00 45.07 3.27
2627 6308 6.820335 TGTATTCACATGGAAGACCTATGAG 58.180 40.000 14.86 0.00 45.07 2.90
2628 6309 6.806668 TGTATTCACATGGAAGACCTATGA 57.193 37.500 14.86 0.00 45.07 2.15
2629 6310 7.500227 ACAATGTATTCACATGGAAGACCTATG 59.500 37.037 14.86 13.20 45.07 2.23
2630 6311 7.577303 ACAATGTATTCACATGGAAGACCTAT 58.423 34.615 14.86 4.86 45.07 2.57
2631 6312 6.957631 ACAATGTATTCACATGGAAGACCTA 58.042 36.000 14.86 3.24 45.07 3.08
2632 6313 5.819991 ACAATGTATTCACATGGAAGACCT 58.180 37.500 14.86 6.50 45.07 3.85
2633 6314 7.807977 ATACAATGTATTCACATGGAAGACC 57.192 36.000 14.86 0.00 45.07 3.85
2670 6351 1.731720 GCACACTTGCCCAACAAAAA 58.268 45.000 0.00 0.00 43.66 1.94
2671 6352 3.450028 GCACACTTGCCCAACAAAA 57.550 47.368 0.00 0.00 43.66 2.44
2681 6362 1.069906 GCTTCTTACCGTGCACACTTG 60.070 52.381 18.64 4.38 0.00 3.16
2682 6363 1.202651 AGCTTCTTACCGTGCACACTT 60.203 47.619 18.64 2.12 0.00 3.16
2683 6364 0.393077 AGCTTCTTACCGTGCACACT 59.607 50.000 18.64 2.81 0.00 3.55
2684 6365 0.790814 GAGCTTCTTACCGTGCACAC 59.209 55.000 18.64 0.00 0.00 3.82
2685 6366 0.391228 TGAGCTTCTTACCGTGCACA 59.609 50.000 18.64 0.00 0.00 4.57
2686 6367 0.790814 GTGAGCTTCTTACCGTGCAC 59.209 55.000 6.82 6.82 0.00 4.57
2687 6368 0.679505 AGTGAGCTTCTTACCGTGCA 59.320 50.000 0.00 0.00 0.00 4.57
2688 6369 2.531206 CTAGTGAGCTTCTTACCGTGC 58.469 52.381 0.00 0.00 0.00 5.34
2689 6370 2.159226 CCCTAGTGAGCTTCTTACCGTG 60.159 54.545 0.00 0.00 0.00 4.94
2690 6371 2.100989 CCCTAGTGAGCTTCTTACCGT 58.899 52.381 0.00 0.00 0.00 4.83
2691 6372 1.202428 GCCCTAGTGAGCTTCTTACCG 60.202 57.143 0.00 0.00 0.00 4.02
2692 6373 1.831736 TGCCCTAGTGAGCTTCTTACC 59.168 52.381 0.00 0.00 0.00 2.85
2693 6374 2.740256 GCTGCCCTAGTGAGCTTCTTAC 60.740 54.545 0.00 0.00 0.00 2.34
2694 6375 1.482593 GCTGCCCTAGTGAGCTTCTTA 59.517 52.381 0.00 0.00 0.00 2.10
2695 6376 0.251634 GCTGCCCTAGTGAGCTTCTT 59.748 55.000 0.00 0.00 0.00 2.52
2696 6377 0.617249 AGCTGCCCTAGTGAGCTTCT 60.617 55.000 0.00 0.00 40.19 2.85
2697 6378 0.179086 GAGCTGCCCTAGTGAGCTTC 60.179 60.000 8.37 0.00 43.18 3.86
2698 6379 0.906756 TGAGCTGCCCTAGTGAGCTT 60.907 55.000 8.37 0.00 43.18 3.74
2699 6380 1.305633 TGAGCTGCCCTAGTGAGCT 60.306 57.895 7.02 7.02 45.82 4.09
2700 6381 1.143620 CTGAGCTGCCCTAGTGAGC 59.856 63.158 0.00 0.00 0.00 4.26
2701 6382 0.901124 AACTGAGCTGCCCTAGTGAG 59.099 55.000 0.00 0.00 0.00 3.51
2702 6383 1.002430 CAAACTGAGCTGCCCTAGTGA 59.998 52.381 0.00 0.00 0.00 3.41
2703 6384 1.271054 ACAAACTGAGCTGCCCTAGTG 60.271 52.381 0.00 0.00 0.00 2.74
2704 6385 1.059913 ACAAACTGAGCTGCCCTAGT 58.940 50.000 0.00 0.00 0.00 2.57
2705 6386 1.271054 ACACAAACTGAGCTGCCCTAG 60.271 52.381 0.00 0.00 0.00 3.02
2706 6387 0.764890 ACACAAACTGAGCTGCCCTA 59.235 50.000 0.00 0.00 0.00 3.53
2707 6388 0.764890 TACACAAACTGAGCTGCCCT 59.235 50.000 0.00 0.00 0.00 5.19
2708 6389 1.826385 ATACACAAACTGAGCTGCCC 58.174 50.000 0.00 0.00 0.00 5.36
2709 6390 2.813754 TGAATACACAAACTGAGCTGCC 59.186 45.455 0.00 0.00 0.00 4.85
2710 6391 3.665323 CGTGAATACACAAACTGAGCTGC 60.665 47.826 0.00 0.00 46.20 5.25
2711 6392 3.494626 ACGTGAATACACAAACTGAGCTG 59.505 43.478 0.00 0.00 46.20 4.24
2712 6393 3.728845 ACGTGAATACACAAACTGAGCT 58.271 40.909 0.00 0.00 46.20 4.09
2713 6394 3.741344 AGACGTGAATACACAAACTGAGC 59.259 43.478 0.00 0.00 46.20 4.26
2714 6395 6.150318 AGTAGACGTGAATACACAAACTGAG 58.850 40.000 0.00 0.00 46.20 3.35
2715 6396 6.080648 AGTAGACGTGAATACACAAACTGA 57.919 37.500 0.00 0.00 46.20 3.41
2716 6397 6.764877 AAGTAGACGTGAATACACAAACTG 57.235 37.500 0.00 0.00 46.20 3.16
2717 6398 7.781548 AAAAGTAGACGTGAATACACAAACT 57.218 32.000 0.00 0.00 46.20 2.66
2720 6401 9.701098 AGAATAAAAGTAGACGTGAATACACAA 57.299 29.630 0.00 0.00 46.20 3.33
2721 6402 9.701098 AAGAATAAAAGTAGACGTGAATACACA 57.299 29.630 0.00 0.00 46.20 3.72
2723 6404 9.362539 GGAAGAATAAAAGTAGACGTGAATACA 57.637 33.333 0.00 0.00 0.00 2.29
2724 6405 9.583765 AGGAAGAATAAAAGTAGACGTGAATAC 57.416 33.333 0.00 0.00 0.00 1.89
2726 6407 9.503399 AAAGGAAGAATAAAAGTAGACGTGAAT 57.497 29.630 0.00 0.00 0.00 2.57
2727 6408 8.897872 AAAGGAAGAATAAAAGTAGACGTGAA 57.102 30.769 0.00 0.00 0.00 3.18
2728 6409 8.897872 AAAAGGAAGAATAAAAGTAGACGTGA 57.102 30.769 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.