Multiple sequence alignment - TraesCS3D01G097400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS3D01G097400 chr3D 100.000 8703 0 0 1 8703 49513304 49522006 0.000000e+00 16072.0
1 TraesCS3D01G097400 chr3D 97.091 275 6 1 1 273 18992832 18993106 6.150000e-126 462.0
2 TraesCS3D01G097400 chr3D 96.441 281 8 2 1 279 607505929 607505649 6.150000e-126 462.0
3 TraesCS3D01G097400 chr3D 97.080 274 7 1 1 273 594981739 594982012 2.210000e-125 460.0
4 TraesCS3D01G097400 chr3D 96.403 278 7 2 1 277 10341165 10340890 1.030000e-123 455.0
5 TraesCS3D01G097400 chr3A 95.403 8157 278 43 587 8702 62421126 62429226 0.000000e+00 12896.0
6 TraesCS3D01G097400 chr3B 95.937 7852 234 40 581 8391 78740991 78748798 0.000000e+00 12654.0
7 TraesCS3D01G097400 chr3B 85.479 303 25 9 8407 8703 78815445 78815734 1.840000e-76 298.0
8 TraesCS3D01G097400 chr3B 79.412 102 15 5 5597 5694 5469732 5469831 5.640000e-07 67.6
9 TraesCS3D01G097400 chr3B 79.412 102 15 5 5597 5694 5491181 5491082 5.640000e-07 67.6
10 TraesCS3D01G097400 chr1D 94.792 1613 80 2 5808 7419 113833442 113835051 0.000000e+00 2510.0
11 TraesCS3D01G097400 chr1D 88.620 413 32 9 4826 5232 113833040 113833443 1.020000e-133 488.0
12 TraesCS3D01G097400 chr1D 79.352 247 43 6 329 570 481454667 481454910 5.400000e-37 167.0
13 TraesCS3D01G097400 chr1D 78.182 220 45 3 355 572 256112302 256112084 4.240000e-28 137.0
14 TraesCS3D01G097400 chr7A 92.861 1653 75 18 663 2304 20767468 20769088 0.000000e+00 2359.0
15 TraesCS3D01G097400 chr7A 95.395 304 11 2 6033 6336 299399381 299399681 1.700000e-131 481.0
16 TraesCS3D01G097400 chr6A 92.611 1651 79 20 663 2303 617892389 617894006 0.000000e+00 2333.0
17 TraesCS3D01G097400 chr5B 92.595 1607 76 21 663 2258 503723233 503724807 0.000000e+00 2268.0
18 TraesCS3D01G097400 chr5B 77.186 263 51 8 311 569 479201929 479202186 2.530000e-30 145.0
19 TraesCS3D01G097400 chr5B 100.000 31 0 0 2274 2304 503724808 503724838 3.390000e-04 58.4
20 TraesCS3D01G097400 chr1A 91.112 1609 76 29 663 2258 516712579 516711025 0.000000e+00 2117.0
21 TraesCS3D01G097400 chr1A 90.909 44 2 2 2274 2317 516711024 516710983 3.390000e-04 58.4
22 TraesCS3D01G097400 chr4A 93.346 541 34 1 5808 6348 564037778 564037240 0.000000e+00 798.0
23 TraesCS3D01G097400 chr4A 86.978 407 36 11 4832 5232 564038172 564037777 8.020000e-120 442.0
24 TraesCS3D01G097400 chrUn 97.173 283 5 3 1 281 26668304 26668023 7.910000e-130 475.0
25 TraesCS3D01G097400 chrUn 79.412 102 15 5 5597 5694 34340527 34340626 5.640000e-07 67.6
26 TraesCS3D01G097400 chr5D 97.455 275 5 1 1 273 41583508 41583234 1.320000e-127 468.0
27 TraesCS3D01G097400 chr5D 95.833 288 8 3 1 287 447353329 447353045 6.150000e-126 462.0
28 TraesCS3D01G097400 chr4D 97.091 275 6 1 1 273 389207671 389207945 6.150000e-126 462.0
29 TraesCS3D01G097400 chr4D 79.389 131 21 5 5597 5725 19501751 19501877 4.330000e-13 87.9
30 TraesCS3D01G097400 chr7D 96.703 273 9 0 1 273 173228348 173228620 1.030000e-123 455.0
31 TraesCS3D01G097400 chr7D 79.545 132 22 5 5597 5725 120096945 120097074 1.200000e-13 89.8
32 TraesCS3D01G097400 chr7D 83.696 92 13 2 5625 5714 84164933 84165024 1.560000e-12 86.1
33 TraesCS3D01G097400 chr6D 82.039 206 32 4 336 539 315365589 315365387 4.180000e-38 171.0
34 TraesCS3D01G097400 chr7B 79.545 220 41 4 355 572 713286413 713286196 4.210000e-33 154.0
35 TraesCS3D01G097400 chr7B 77.824 239 47 6 336 572 529826220 529825986 9.110000e-30 143.0
36 TraesCS3D01G097400 chr6B 78.873 213 39 6 363 572 701396259 701396050 1.180000e-28 139.0
37 TraesCS3D01G097400 chr5A 78.281 221 43 5 355 572 614360380 614360162 4.240000e-28 137.0
38 TraesCS3D01G097400 chr5A 82.178 101 13 3 7606 7706 175784351 175784446 2.010000e-11 82.4
39 TraesCS3D01G097400 chr4B 78.182 220 45 3 355 572 76127763 76127545 4.240000e-28 137.0
40 TraesCS3D01G097400 chr2B 77.637 237 46 6 336 569 157756001 157756233 4.240000e-28 137.0
41 TraesCS3D01G097400 chr1B 91.489 47 4 0 5652 5698 684587504 684587458 2.030000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS3D01G097400 chr3D 49513304 49522006 8702 False 16072.0 16072 100.0000 1 8703 1 chr3D.!!$F2 8702
1 TraesCS3D01G097400 chr3A 62421126 62429226 8100 False 12896.0 12896 95.4030 587 8702 1 chr3A.!!$F1 8115
2 TraesCS3D01G097400 chr3B 78740991 78748798 7807 False 12654.0 12654 95.9370 581 8391 1 chr3B.!!$F2 7810
3 TraesCS3D01G097400 chr1D 113833040 113835051 2011 False 1499.0 2510 91.7060 4826 7419 2 chr1D.!!$F2 2593
4 TraesCS3D01G097400 chr7A 20767468 20769088 1620 False 2359.0 2359 92.8610 663 2304 1 chr7A.!!$F1 1641
5 TraesCS3D01G097400 chr6A 617892389 617894006 1617 False 2333.0 2333 92.6110 663 2303 1 chr6A.!!$F1 1640
6 TraesCS3D01G097400 chr5B 503723233 503724838 1605 False 1163.2 2268 96.2975 663 2304 2 chr5B.!!$F2 1641
7 TraesCS3D01G097400 chr1A 516710983 516712579 1596 True 1087.7 2117 91.0105 663 2317 2 chr1A.!!$R1 1654
8 TraesCS3D01G097400 chr4A 564037240 564038172 932 True 620.0 798 90.1620 4832 6348 2 chr4A.!!$R1 1516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.108520 CCCTTACGAACTGGCGCTAA 60.109 55.000 7.64 0.0 33.86 3.09 F
270 271 0.321653 CTAAAGCCCGGTTCTGCACT 60.322 55.000 0.00 0.0 0.00 4.40 F
579 580 0.828022 ATTATGGAACGGGCAGACGA 59.172 50.000 0.00 0.0 37.61 4.20 F
1546 1588 1.673168 GCTTGACATCCTAAGCCTGG 58.327 55.000 0.00 0.0 42.57 4.45 F
1773 1825 2.299867 ACCAAACAACAATGGATCTGGC 59.700 45.455 0.00 0.0 39.12 4.85 F
3700 3758 1.795872 TCACCAAGTGCGACATAAACG 59.204 47.619 0.00 0.0 32.98 3.60 F
4130 4195 1.055849 TTGGCTGCTCTCACCTGTAA 58.944 50.000 0.00 0.0 0.00 2.41 F
4343 4411 1.755959 AGCATGATGAGAGAGCGAAGT 59.244 47.619 0.00 0.0 0.00 3.01 F
6049 6129 2.012673 CCGGAAGAATCTTGAAGCAGG 58.987 52.381 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 1171 1.005294 GCAATGTTGCGGTGCAGAAG 61.005 55.000 1.53 0.0 45.11 2.85 R
1524 1566 1.134670 AGGCTTAGGATGTCAAGCGAC 60.135 52.381 0.00 0.0 46.50 5.19 R
2078 2131 2.119886 CCTCTAGAGGGGAAGCACG 58.880 63.158 28.68 1.8 44.87 5.34 R
2395 2451 3.009473 AGGCTGAGAACCTGCAAAATAGA 59.991 43.478 0.00 0.0 40.95 1.98 R
3770 3828 2.098607 CCTTAAGTAGCGACACGATGGA 59.901 50.000 0.97 0.0 0.00 3.41 R
4801 4869 5.841957 AGTTCTTGTTGAAGTTCTGCAAT 57.158 34.783 4.17 0.0 34.90 3.56 R
5864 5944 5.007682 ACAGACAGTGTTGGTTTGTTACTT 58.992 37.500 0.00 0.0 34.94 2.24 R
6302 6382 2.422479 GTCATACGCACTGTCAGGTCTA 59.578 50.000 4.53 0.0 0.00 2.59 R
7844 7928 0.257328 TGTTGAAACAGGCACCTCCA 59.743 50.000 0.00 0.0 37.29 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 5.452341 AAAATAAAACCAAAACACCCCCA 57.548 34.783 0.00 0.00 0.00 4.96
66 67 5.452341 AAATAAAACCAAAACACCCCCAA 57.548 34.783 0.00 0.00 0.00 4.12
67 68 5.452341 AATAAAACCAAAACACCCCCAAA 57.548 34.783 0.00 0.00 0.00 3.28
68 69 2.791347 AAACCAAAACACCCCCAAAC 57.209 45.000 0.00 0.00 0.00 2.93
69 70 1.657804 AACCAAAACACCCCCAAACA 58.342 45.000 0.00 0.00 0.00 2.83
70 71 1.886422 ACCAAAACACCCCCAAACAT 58.114 45.000 0.00 0.00 0.00 2.71
71 72 2.200955 ACCAAAACACCCCCAAACATT 58.799 42.857 0.00 0.00 0.00 2.71
72 73 2.578480 ACCAAAACACCCCCAAACATTT 59.422 40.909 0.00 0.00 0.00 2.32
73 74 3.780850 ACCAAAACACCCCCAAACATTTA 59.219 39.130 0.00 0.00 0.00 1.40
74 75 4.141597 ACCAAAACACCCCCAAACATTTAG 60.142 41.667 0.00 0.00 0.00 1.85
75 76 4.141597 CCAAAACACCCCCAAACATTTAGT 60.142 41.667 0.00 0.00 0.00 2.24
76 77 5.070580 CCAAAACACCCCCAAACATTTAGTA 59.929 40.000 0.00 0.00 0.00 1.82
77 78 5.794726 AAACACCCCCAAACATTTAGTAC 57.205 39.130 0.00 0.00 0.00 2.73
78 79 3.770046 ACACCCCCAAACATTTAGTACC 58.230 45.455 0.00 0.00 0.00 3.34
79 80 2.750712 CACCCCCAAACATTTAGTACCG 59.249 50.000 0.00 0.00 0.00 4.02
80 81 2.291089 ACCCCCAAACATTTAGTACCGG 60.291 50.000 0.00 0.00 0.00 5.28
81 82 2.291089 CCCCCAAACATTTAGTACCGGT 60.291 50.000 13.98 13.98 0.00 5.28
82 83 3.423749 CCCCAAACATTTAGTACCGGTT 58.576 45.455 15.04 0.00 0.00 4.44
83 84 3.191791 CCCCAAACATTTAGTACCGGTTG 59.808 47.826 15.04 6.22 0.00 3.77
84 85 3.191791 CCCAAACATTTAGTACCGGTTGG 59.808 47.826 15.04 10.33 42.84 3.77
109 110 2.543635 ACCAACCGGTACTAATGTCCT 58.456 47.619 8.00 0.00 46.71 3.85
110 111 3.711863 ACCAACCGGTACTAATGTCCTA 58.288 45.455 8.00 0.00 46.71 2.94
111 112 3.448660 ACCAACCGGTACTAATGTCCTAC 59.551 47.826 8.00 0.00 46.71 3.18
112 113 3.448301 CCAACCGGTACTAATGTCCTACA 59.552 47.826 8.00 0.00 0.00 2.74
113 114 4.427312 CAACCGGTACTAATGTCCTACAC 58.573 47.826 8.00 0.00 0.00 2.90
114 115 2.684881 ACCGGTACTAATGTCCTACACG 59.315 50.000 4.49 0.00 0.00 4.49
115 116 2.542411 CCGGTACTAATGTCCTACACGC 60.542 54.545 0.00 0.00 0.00 5.34
116 117 2.097954 CGGTACTAATGTCCTACACGCA 59.902 50.000 0.00 0.00 0.00 5.24
117 118 3.442100 GGTACTAATGTCCTACACGCAC 58.558 50.000 0.00 0.00 0.00 5.34
118 119 2.667473 ACTAATGTCCTACACGCACC 57.333 50.000 0.00 0.00 0.00 5.01
119 120 1.206371 ACTAATGTCCTACACGCACCC 59.794 52.381 0.00 0.00 0.00 4.61
120 121 0.173935 TAATGTCCTACACGCACCCG 59.826 55.000 0.00 0.00 41.14 5.28
121 122 2.515996 AATGTCCTACACGCACCCGG 62.516 60.000 0.00 0.00 39.22 5.73
122 123 4.446413 GTCCTACACGCACCCGGG 62.446 72.222 22.25 22.25 45.29 5.73
153 154 1.574428 CACGTGGTGGCACTTTAGC 59.426 57.895 18.45 0.25 0.00 3.09
154 155 1.959226 ACGTGGTGGCACTTTAGCG 60.959 57.895 18.45 15.80 34.64 4.26
155 156 2.561373 GTGGTGGCACTTTAGCGC 59.439 61.111 18.45 0.00 34.64 5.92
160 161 3.053896 GGCACTTTAGCGCCGGTT 61.054 61.111 2.29 0.00 38.82 4.44
161 162 2.479198 GCACTTTAGCGCCGGTTC 59.521 61.111 2.29 0.00 0.00 3.62
162 163 2.776072 CACTTTAGCGCCGGTTCG 59.224 61.111 2.29 0.00 0.00 3.95
163 164 2.025418 CACTTTAGCGCCGGTTCGT 61.025 57.895 2.29 0.00 0.00 3.85
164 165 2.025418 ACTTTAGCGCCGGTTCGTG 61.025 57.895 2.29 0.00 0.00 4.35
165 166 1.735198 CTTTAGCGCCGGTTCGTGA 60.735 57.895 2.29 0.00 0.00 4.35
166 167 1.952266 CTTTAGCGCCGGTTCGTGAC 61.952 60.000 2.29 0.00 0.00 3.67
167 168 4.764336 TAGCGCCGGTTCGTGACG 62.764 66.667 2.29 0.00 0.00 4.35
180 181 4.418013 TTCGTGACGAACCGATACTAAA 57.582 40.909 17.28 0.00 41.05 1.85
181 182 4.007282 TCGTGACGAACCGATACTAAAG 57.993 45.455 4.69 0.00 31.06 1.85
182 183 3.103738 CGTGACGAACCGATACTAAAGG 58.896 50.000 0.00 0.00 0.00 3.11
183 184 3.442100 GTGACGAACCGATACTAAAGGG 58.558 50.000 0.00 0.00 0.00 3.95
184 185 2.428171 TGACGAACCGATACTAAAGGGG 59.572 50.000 0.00 0.00 0.00 4.79
185 186 1.758862 ACGAACCGATACTAAAGGGGG 59.241 52.381 0.00 0.00 0.00 5.40
186 187 2.034124 CGAACCGATACTAAAGGGGGA 58.966 52.381 0.00 0.00 0.00 4.81
187 188 2.223900 CGAACCGATACTAAAGGGGGAC 60.224 54.545 0.00 0.00 0.00 4.46
207 208 5.087391 GACCTTTAGTCCCCACTCTTTAG 57.913 47.826 0.00 0.00 39.84 1.85
208 209 4.500452 ACCTTTAGTCCCCACTCTTTAGT 58.500 43.478 0.00 0.00 35.91 2.24
209 210 5.569026 GACCTTTAGTCCCCACTCTTTAGTG 60.569 48.000 0.00 0.00 44.83 2.74
210 211 8.959287 GACCTTTAGTCCCCACTCTTTAGTGC 62.959 50.000 0.00 0.00 44.38 4.40
217 218 1.878953 CACTCTTTAGTGCCGGTTGT 58.121 50.000 1.90 0.00 46.28 3.32
218 219 1.531149 CACTCTTTAGTGCCGGTTGTG 59.469 52.381 1.90 0.00 46.28 3.33
219 220 1.156736 CTCTTTAGTGCCGGTTGTGG 58.843 55.000 1.90 0.00 0.00 4.17
220 221 0.759959 TCTTTAGTGCCGGTTGTGGA 59.240 50.000 1.90 0.00 0.00 4.02
221 222 1.141254 TCTTTAGTGCCGGTTGTGGAA 59.859 47.619 1.90 0.00 0.00 3.53
222 223 1.265905 CTTTAGTGCCGGTTGTGGAAC 59.734 52.381 1.90 0.00 37.90 3.62
229 230 2.203294 GGTTGTGGAACCGGCACT 60.203 61.111 0.00 0.00 42.47 4.40
230 231 1.071814 GGTTGTGGAACCGGCACTA 59.928 57.895 0.00 0.00 42.47 2.74
231 232 0.535553 GGTTGTGGAACCGGCACTAA 60.536 55.000 0.00 0.00 42.47 2.24
232 233 1.310904 GTTGTGGAACCGGCACTAAA 58.689 50.000 0.00 0.00 34.36 1.85
233 234 1.265905 GTTGTGGAACCGGCACTAAAG 59.734 52.381 0.00 0.00 34.36 1.85
234 235 0.250553 TGTGGAACCGGCACTAAAGG 60.251 55.000 0.00 0.00 34.36 3.11
235 236 1.302993 TGGAACCGGCACTAAAGGC 60.303 57.895 0.00 0.00 0.00 4.35
242 243 2.776659 GGCACTAAAGGCCCTTACG 58.223 57.895 0.00 0.00 45.87 3.18
243 244 0.251073 GGCACTAAAGGCCCTTACGA 59.749 55.000 0.00 0.00 45.87 3.43
244 245 1.339342 GGCACTAAAGGCCCTTACGAA 60.339 52.381 0.00 0.00 45.87 3.85
245 246 1.736126 GCACTAAAGGCCCTTACGAAC 59.264 52.381 0.00 0.00 0.00 3.95
246 247 2.614734 GCACTAAAGGCCCTTACGAACT 60.615 50.000 0.00 0.00 0.00 3.01
247 248 3.000727 CACTAAAGGCCCTTACGAACTG 58.999 50.000 0.00 0.00 0.00 3.16
248 249 2.027469 ACTAAAGGCCCTTACGAACTGG 60.027 50.000 0.00 0.00 0.00 4.00
249 250 0.608308 AAAGGCCCTTACGAACTGGC 60.608 55.000 0.00 0.00 43.26 4.85
250 251 2.798148 AAGGCCCTTACGAACTGGCG 62.798 60.000 0.00 0.00 44.96 5.69
251 252 3.497031 GCCCTTACGAACTGGCGC 61.497 66.667 0.00 0.00 33.59 6.53
252 253 2.264794 CCCTTACGAACTGGCGCT 59.735 61.111 7.64 0.00 33.86 5.92
253 254 1.514087 CCCTTACGAACTGGCGCTA 59.486 57.895 7.64 0.00 33.86 4.26
254 255 0.108520 CCCTTACGAACTGGCGCTAA 60.109 55.000 7.64 0.00 33.86 3.09
255 256 1.673626 CCCTTACGAACTGGCGCTAAA 60.674 52.381 7.64 0.00 33.86 1.85
256 257 1.659098 CCTTACGAACTGGCGCTAAAG 59.341 52.381 7.64 5.49 33.86 1.85
257 258 1.060698 CTTACGAACTGGCGCTAAAGC 59.939 52.381 7.64 0.00 37.78 3.51
265 266 2.436115 GCGCTAAAGCCCGGTTCT 60.436 61.111 0.00 0.00 37.91 3.01
266 267 2.750888 GCGCTAAAGCCCGGTTCTG 61.751 63.158 0.00 0.00 37.91 3.02
267 268 2.750888 CGCTAAAGCCCGGTTCTGC 61.751 63.158 0.00 0.00 37.91 4.26
268 269 1.674322 GCTAAAGCCCGGTTCTGCA 60.674 57.895 0.00 0.00 34.31 4.41
269 270 1.923227 GCTAAAGCCCGGTTCTGCAC 61.923 60.000 0.00 0.00 34.31 4.57
270 271 0.321653 CTAAAGCCCGGTTCTGCACT 60.322 55.000 0.00 0.00 0.00 4.40
271 272 0.978151 TAAAGCCCGGTTCTGCACTA 59.022 50.000 0.00 0.00 0.00 2.74
272 273 0.321653 AAAGCCCGGTTCTGCACTAG 60.322 55.000 0.00 0.00 0.00 2.57
273 274 1.192146 AAGCCCGGTTCTGCACTAGA 61.192 55.000 0.00 0.00 0.00 2.43
274 275 1.153549 GCCCGGTTCTGCACTAGAG 60.154 63.158 0.00 0.00 36.61 2.43
275 276 1.605058 GCCCGGTTCTGCACTAGAGA 61.605 60.000 0.00 0.00 36.61 3.10
276 277 0.895530 CCCGGTTCTGCACTAGAGAA 59.104 55.000 0.00 0.00 36.61 2.87
277 278 1.134965 CCCGGTTCTGCACTAGAGAAG 60.135 57.143 0.00 0.00 36.61 2.85
278 279 1.819288 CCGGTTCTGCACTAGAGAAGA 59.181 52.381 0.00 0.00 36.61 2.87
279 280 2.231478 CCGGTTCTGCACTAGAGAAGAA 59.769 50.000 6.51 6.51 36.61 2.52
280 281 3.246619 CGGTTCTGCACTAGAGAAGAAC 58.753 50.000 25.25 25.25 45.00 3.01
281 282 3.057174 CGGTTCTGCACTAGAGAAGAACT 60.057 47.826 29.30 0.00 45.05 3.01
282 283 4.490743 GGTTCTGCACTAGAGAAGAACTC 58.509 47.826 29.30 20.03 45.05 3.01
297 298 8.696410 GAGAAGAACTCTCCAACTACTATTTG 57.304 38.462 0.00 0.00 44.39 2.32
298 299 8.423906 AGAAGAACTCTCCAACTACTATTTGA 57.576 34.615 0.00 0.00 0.00 2.69
299 300 8.871125 AGAAGAACTCTCCAACTACTATTTGAA 58.129 33.333 0.00 0.00 0.00 2.69
300 301 9.490379 GAAGAACTCTCCAACTACTATTTGAAA 57.510 33.333 0.00 0.00 0.00 2.69
301 302 9.847224 AAGAACTCTCCAACTACTATTTGAAAA 57.153 29.630 0.00 0.00 0.00 2.29
336 337 8.441312 AAAAAGACTACTCCACGATTTTACAA 57.559 30.769 0.00 0.00 0.00 2.41
337 338 8.617290 AAAAGACTACTCCACGATTTTACAAT 57.383 30.769 0.00 0.00 0.00 2.71
338 339 7.596749 AAGACTACTCCACGATTTTACAATG 57.403 36.000 0.00 0.00 0.00 2.82
339 340 6.698380 AGACTACTCCACGATTTTACAATGT 58.302 36.000 0.00 0.00 0.00 2.71
340 341 7.833786 AGACTACTCCACGATTTTACAATGTA 58.166 34.615 0.00 0.00 0.00 2.29
341 342 7.974501 AGACTACTCCACGATTTTACAATGTAG 59.025 37.037 0.00 0.00 0.00 2.74
342 343 7.609056 ACTACTCCACGATTTTACAATGTAGT 58.391 34.615 0.00 0.00 34.14 2.73
343 344 8.092687 ACTACTCCACGATTTTACAATGTAGTT 58.907 33.333 0.00 0.00 35.00 2.24
344 345 7.360575 ACTCCACGATTTTACAATGTAGTTC 57.639 36.000 0.00 0.00 0.00 3.01
345 346 6.090358 ACTCCACGATTTTACAATGTAGTTCG 59.910 38.462 15.24 15.24 0.00 3.95
346 347 5.927689 TCCACGATTTTACAATGTAGTTCGT 59.072 36.000 16.15 16.15 38.94 3.85
347 348 7.089538 TCCACGATTTTACAATGTAGTTCGTA 58.910 34.615 19.27 8.85 36.88 3.43
348 349 7.760794 TCCACGATTTTACAATGTAGTTCGTAT 59.239 33.333 19.27 4.23 36.88 3.06
349 350 9.022915 CCACGATTTTACAATGTAGTTCGTATA 57.977 33.333 19.27 0.00 36.88 1.47
385 386 9.698309 TCAAAAGTCAAACATTACAAACTTTGA 57.302 25.926 8.55 0.00 37.12 2.69
388 389 9.868277 AAAGTCAAACATTACAAACTTTGATCA 57.132 25.926 8.55 0.00 36.06 2.92
390 391 9.467258 AGTCAAACATTACAAACTTTGATCATG 57.533 29.630 8.55 8.92 35.61 3.07
391 392 9.248291 GTCAAACATTACAAACTTTGATCATGT 57.752 29.630 8.55 9.45 35.61 3.21
392 393 9.814899 TCAAACATTACAAACTTTGATCATGTT 57.185 25.926 8.55 13.78 38.47 2.71
399 400 9.944663 TTACAAACTTTGATCATGTTTACAGAC 57.055 29.630 19.93 0.00 33.31 3.51
400 401 7.995289 ACAAACTTTGATCATGTTTACAGACA 58.005 30.769 19.93 0.00 33.31 3.41
401 402 8.465999 ACAAACTTTGATCATGTTTACAGACAA 58.534 29.630 19.93 0.00 33.31 3.18
402 403 9.299963 CAAACTTTGATCATGTTTACAGACAAA 57.700 29.630 19.93 0.00 33.31 2.83
403 404 9.868277 AAACTTTGATCATGTTTACAGACAAAA 57.132 25.926 19.34 0.00 32.92 2.44
404 405 9.868277 AACTTTGATCATGTTTACAGACAAAAA 57.132 25.926 0.00 0.00 32.47 1.94
430 431 9.811995 ATATGTAGACTCAAAATACTAAACGCA 57.188 29.630 0.00 0.00 0.00 5.24
431 432 8.718102 ATGTAGACTCAAAATACTAAACGCAT 57.282 30.769 0.00 0.00 0.00 4.73
432 433 9.811995 ATGTAGACTCAAAATACTAAACGCATA 57.188 29.630 0.00 0.00 0.00 3.14
433 434 9.811995 TGTAGACTCAAAATACTAAACGCATAT 57.188 29.630 0.00 0.00 0.00 1.78
435 436 8.942338 AGACTCAAAATACTAAACGCATATCA 57.058 30.769 0.00 0.00 0.00 2.15
436 437 8.818057 AGACTCAAAATACTAAACGCATATCAC 58.182 33.333 0.00 0.00 0.00 3.06
437 438 8.718102 ACTCAAAATACTAAACGCATATCACT 57.282 30.769 0.00 0.00 0.00 3.41
438 439 8.604035 ACTCAAAATACTAAACGCATATCACTG 58.396 33.333 0.00 0.00 0.00 3.66
439 440 7.915508 TCAAAATACTAAACGCATATCACTGG 58.084 34.615 0.00 0.00 0.00 4.00
440 441 7.766738 TCAAAATACTAAACGCATATCACTGGA 59.233 33.333 0.00 0.00 0.00 3.86
441 442 8.559536 CAAAATACTAAACGCATATCACTGGAT 58.440 33.333 0.00 0.00 37.55 3.41
442 443 9.772973 AAAATACTAAACGCATATCACTGGATA 57.227 29.630 0.00 0.00 40.17 2.59
443 444 8.758633 AATACTAAACGCATATCACTGGATAC 57.241 34.615 0.00 0.00 38.76 2.24
516 517 9.720769 AAATAGTTTTCTCTCTAAATTCGGTCA 57.279 29.630 0.00 0.00 0.00 4.02
517 518 9.720769 AATAGTTTTCTCTCTAAATTCGGTCAA 57.279 29.630 0.00 0.00 0.00 3.18
518 519 9.720769 ATAGTTTTCTCTCTAAATTCGGTCAAA 57.279 29.630 0.00 0.00 0.00 2.69
519 520 8.089115 AGTTTTCTCTCTAAATTCGGTCAAAG 57.911 34.615 0.00 0.00 0.00 2.77
520 521 7.715686 AGTTTTCTCTCTAAATTCGGTCAAAGT 59.284 33.333 0.00 0.00 0.00 2.66
521 522 8.343366 GTTTTCTCTCTAAATTCGGTCAAAGTT 58.657 33.333 0.00 0.00 0.00 2.66
522 523 8.446599 TTTCTCTCTAAATTCGGTCAAAGTTT 57.553 30.769 0.00 0.00 0.00 2.66
523 524 7.421530 TCTCTCTAAATTCGGTCAAAGTTTG 57.578 36.000 9.44 9.44 0.00 2.93
524 525 5.997385 TCTCTAAATTCGGTCAAAGTTTGC 58.003 37.500 10.90 6.16 0.00 3.68
525 526 5.763204 TCTCTAAATTCGGTCAAAGTTTGCT 59.237 36.000 10.90 0.00 0.00 3.91
526 527 6.262273 TCTCTAAATTCGGTCAAAGTTTGCTT 59.738 34.615 10.90 0.22 36.30 3.91
527 528 7.442969 TCTCTAAATTCGGTCAAAGTTTGCTTA 59.557 33.333 10.90 0.00 33.95 3.09
528 529 7.932335 TCTAAATTCGGTCAAAGTTTGCTTAA 58.068 30.769 10.90 3.36 33.95 1.85
529 530 8.573035 TCTAAATTCGGTCAAAGTTTGCTTAAT 58.427 29.630 10.90 5.37 33.95 1.40
530 531 9.191995 CTAAATTCGGTCAAAGTTTGCTTAATT 57.808 29.630 10.90 10.32 33.95 1.40
531 532 8.432110 AAATTCGGTCAAAGTTTGCTTAATTT 57.568 26.923 10.90 14.59 33.95 1.82
532 533 9.535878 AAATTCGGTCAAAGTTTGCTTAATTTA 57.464 25.926 10.90 0.00 33.95 1.40
533 534 9.535878 AATTCGGTCAAAGTTTGCTTAATTTAA 57.464 25.926 10.90 0.00 33.95 1.52
534 535 7.917720 TCGGTCAAAGTTTGCTTAATTTAAC 57.082 32.000 10.90 0.69 33.95 2.01
535 536 7.708998 TCGGTCAAAGTTTGCTTAATTTAACT 58.291 30.769 10.90 0.00 33.95 2.24
536 537 8.192110 TCGGTCAAAGTTTGCTTAATTTAACTT 58.808 29.630 10.90 0.00 33.95 2.66
537 538 8.813282 CGGTCAAAGTTTGCTTAATTTAACTTT 58.187 29.630 10.90 12.33 39.99 2.66
570 571 7.346208 TCTATTCGCACAATATTATGGAACG 57.654 36.000 0.00 0.00 0.00 3.95
571 572 4.804608 TTCGCACAATATTATGGAACGG 57.195 40.909 0.00 0.00 0.00 4.44
572 573 3.135225 TCGCACAATATTATGGAACGGG 58.865 45.455 0.00 0.00 0.00 5.28
573 574 2.350388 CGCACAATATTATGGAACGGGC 60.350 50.000 0.00 0.00 0.00 6.13
574 575 2.621055 GCACAATATTATGGAACGGGCA 59.379 45.455 0.00 0.00 0.00 5.36
575 576 3.304659 GCACAATATTATGGAACGGGCAG 60.305 47.826 0.00 0.00 0.00 4.85
576 577 4.133820 CACAATATTATGGAACGGGCAGA 58.866 43.478 0.00 0.00 0.00 4.26
577 578 4.024048 CACAATATTATGGAACGGGCAGAC 60.024 45.833 0.00 0.00 0.00 3.51
578 579 2.519377 TATTATGGAACGGGCAGACG 57.481 50.000 0.00 0.00 40.31 4.18
579 580 0.828022 ATTATGGAACGGGCAGACGA 59.172 50.000 0.00 0.00 37.61 4.20
585 586 2.501223 GAACGGGCAGACGATCACCA 62.501 60.000 0.00 0.00 35.96 4.17
691 705 2.429930 CCGAGTGGGAGTGCCAAA 59.570 61.111 4.30 0.00 38.47 3.28
859 877 4.988716 ACCGACCACTCTCCGCCA 62.989 66.667 0.00 0.00 0.00 5.69
981 1001 4.660611 TGCCACCCGGGGAGGTAA 62.661 66.667 28.68 18.05 38.39 2.85
1133 1164 9.914923 GGTTGTTTTTGTTTGAAATCTGTATTC 57.085 29.630 0.00 0.00 0.00 1.75
1140 1171 5.353123 TGTTTGAAATCTGTATTCGGGTAGC 59.647 40.000 0.00 0.00 0.00 3.58
1353 1394 6.198966 CGATTTCAAGCTGTAAAAGTTGCTTT 59.801 34.615 0.00 0.00 42.89 3.51
1546 1588 1.673168 GCTTGACATCCTAAGCCTGG 58.327 55.000 0.00 0.00 42.57 4.45
1619 1669 2.546368 TGTACATGTTTTGCAGTCGTCC 59.454 45.455 2.30 0.00 0.00 4.79
1642 1694 6.005583 CAAGTGAACTTGCTACACATGATT 57.994 37.500 10.08 0.00 45.59 2.57
1643 1695 6.441274 CAAGTGAACTTGCTACACATGATTT 58.559 36.000 10.08 0.00 45.59 2.17
1644 1696 6.639632 AGTGAACTTGCTACACATGATTTT 57.360 33.333 0.00 0.00 37.05 1.82
1645 1697 7.042797 AGTGAACTTGCTACACATGATTTTT 57.957 32.000 0.00 0.00 37.05 1.94
1729 1781 4.382470 GCTGACCAATGTCACTCTAGTCAT 60.382 45.833 0.00 0.00 46.40 3.06
1773 1825 2.299867 ACCAAACAACAATGGATCTGGC 59.700 45.455 0.00 0.00 39.12 4.85
2202 2255 9.651913 GGGAATTCATTATGCTTTTCTTGTTAA 57.348 29.630 7.93 0.00 0.00 2.01
2342 2398 6.705381 AGAATGAGACATGCTATTAACTGCTC 59.295 38.462 0.00 0.00 0.00 4.26
2441 2497 6.491714 AGGTCAGTATCTCAATGCAGTATT 57.508 37.500 0.00 0.00 0.00 1.89
2442 2498 6.286758 AGGTCAGTATCTCAATGCAGTATTG 58.713 40.000 4.89 4.89 46.09 1.90
2544 2600 2.886523 AGATGTTGCAGCTGCTGTTAAA 59.113 40.909 36.61 21.04 42.66 1.52
2557 2613 5.105997 GCTGCTGTTAAACCTCATGAAGATT 60.106 40.000 0.00 0.00 0.00 2.40
2710 2766 8.036575 AGTTCAGGTTTATACGTTGCAAGTATA 58.963 33.333 17.52 17.52 36.36 1.47
3013 3069 7.532682 TTTTCTGTTAAAGGTGCATTTTCAC 57.467 32.000 0.00 0.00 36.28 3.18
3143 3200 8.822805 AGAACATACACCTAAAGGACATTCTTA 58.177 33.333 2.23 0.00 38.94 2.10
3206 3263 7.822822 ACATTTGTTTCTAGGTTTAGCGTCTAT 59.177 33.333 0.00 0.00 0.00 1.98
3210 3267 9.880157 TTGTTTCTAGGTTTAGCGTCTATAAAT 57.120 29.630 0.00 0.00 0.00 1.40
3245 3302 7.864108 TGATTTACAAGGTCATATTGACTGG 57.136 36.000 7.51 1.22 46.19 4.00
3339 3396 7.562454 TGAACATCGTGATAGTACATCTGTA 57.438 36.000 0.00 0.00 0.00 2.74
3377 3434 3.019564 CCTTGATGAATTCTGGGTCCAC 58.980 50.000 7.05 0.00 0.00 4.02
3700 3758 1.795872 TCACCAAGTGCGACATAAACG 59.204 47.619 0.00 0.00 32.98 3.60
3770 3828 4.993705 TGGTCCAAATGGTCTAGTTTCT 57.006 40.909 0.00 0.00 36.34 2.52
3873 3938 2.569404 GCTGTGCCCCTAGCTATCTTAT 59.431 50.000 0.00 0.00 44.23 1.73
3882 3947 8.267894 TGCCCCTAGCTATCTTATGATTATTTC 58.732 37.037 0.00 0.00 44.23 2.17
4130 4195 1.055849 TTGGCTGCTCTCACCTGTAA 58.944 50.000 0.00 0.00 0.00 2.41
4141 4206 2.125106 CCTGTAACCGCTGGCTCC 60.125 66.667 0.00 0.00 0.00 4.70
4217 4283 9.338291 CTGATGTTGTTTATGTTCTTGATTGAG 57.662 33.333 0.00 0.00 0.00 3.02
4284 4352 8.150296 AGCTAGTAATGGCTTTCAAATGTTTTT 58.850 29.630 0.00 0.00 34.96 1.94
4343 4411 1.755959 AGCATGATGAGAGAGCGAAGT 59.244 47.619 0.00 0.00 0.00 3.01
4418 4486 6.322491 GGCAAACTGTTATAACTCCAATGAC 58.678 40.000 16.33 7.83 0.00 3.06
4450 4518 3.053693 CCTGGGGATGAGGACATGTTTTA 60.054 47.826 0.00 0.00 36.82 1.52
4493 4561 2.862541 TGGCAATGTAAGTTCTGCTGT 58.137 42.857 0.00 0.00 35.13 4.40
4506 4574 9.319143 GTAAGTTCTGCTGTGTCATCTTATTAT 57.681 33.333 0.00 0.00 0.00 1.28
4780 4848 9.725206 AGATACAACTAATAACTTCTAAGGGGA 57.275 33.333 0.00 0.00 0.00 4.81
4915 4983 7.839705 AGACAGAGTTCCATATTACTGTTCCTA 59.160 37.037 0.00 0.00 38.43 2.94
5776 5856 4.340097 TCTTGACATTGATGATTGATGGGC 59.660 41.667 0.00 0.00 0.00 5.36
5802 5882 8.310406 TGTACAGAGTATAATGTTATGCATGC 57.690 34.615 11.82 11.82 37.96 4.06
5864 5944 4.901250 TCCATAGCAGTGAAGGACATATCA 59.099 41.667 0.00 0.00 0.00 2.15
5867 5947 4.833478 AGCAGTGAAGGACATATCAAGT 57.167 40.909 0.00 0.00 0.00 3.16
5924 6004 8.792830 AGAAAAATATGAACGAGAAGGATGAA 57.207 30.769 0.00 0.00 0.00 2.57
5943 6023 5.840243 TGAATTCCATACAAGCTTGGATG 57.160 39.130 35.57 35.57 46.76 3.51
5961 6041 7.437267 GCTTGGATGAGTTTGATATTCCAAATG 59.563 37.037 4.02 0.00 38.18 2.32
6049 6129 2.012673 CCGGAAGAATCTTGAAGCAGG 58.987 52.381 0.00 0.00 0.00 4.85
6302 6382 4.642885 TCAAAAGTTCGTCCTGTTTTCCAT 59.357 37.500 0.00 0.00 0.00 3.41
6351 6431 4.151121 TCATTGGCAGAATCCTGTTTCAA 58.849 39.130 0.00 0.00 42.35 2.69
6397 6477 2.864114 CAGACCCATTCTGTGCCAG 58.136 57.895 0.00 0.00 46.12 4.85
6995 7078 1.523758 AAGTAGCGTGCCCTTCAAAG 58.476 50.000 0.00 0.00 0.00 2.77
7093 7176 2.268298 CTTTGAAGCTCCATTGCATGC 58.732 47.619 11.82 11.82 34.99 4.06
7283 7367 3.117322 TGATCTCTAGAGAAGGTGGGGAG 60.117 52.174 25.77 0.00 41.36 4.30
7392 7476 6.293462 GGTTTTGTGTTCAGAAGATAGTGGTC 60.293 42.308 0.00 0.00 0.00 4.02
7458 7542 2.913613 CTCGGTCGTATTCCGTCATAC 58.086 52.381 4.36 0.00 46.86 2.39
7477 7561 5.188163 TCATACACCGTATCTTTTTCCTCCA 59.812 40.000 0.00 0.00 0.00 3.86
7508 7592 7.974675 ACATATATGCGCTCAAATGGTTATAC 58.025 34.615 12.79 0.00 0.00 1.47
7529 7613 0.109532 TGACATTTCTGTTCCGGGCA 59.890 50.000 0.00 0.00 35.14 5.36
7550 7634 7.011295 CGGGCAAAACTTGATATGCAAATTTAT 59.989 33.333 0.00 0.00 35.10 1.40
7596 7680 1.106351 TTGCAAGTGCCATTGTCCGT 61.106 50.000 0.00 0.00 41.18 4.69
7713 7797 7.284351 CGAAGAAGTGTCTAAACAGCTAAAAG 58.716 38.462 0.00 0.00 35.64 2.27
7790 7874 2.463553 CGAAATCAGCATCGCAATGT 57.536 45.000 0.00 0.00 35.18 2.71
7833 7917 0.311790 CCATGTTGCGTGCTTCAACT 59.688 50.000 14.13 2.27 43.00 3.16
7844 7928 4.917415 GCGTGCTTCAACTTGTGATTATTT 59.083 37.500 0.00 0.00 35.70 1.40
7849 7933 6.095377 GCTTCAACTTGTGATTATTTGGAGG 58.905 40.000 0.00 0.00 35.70 4.30
7869 7953 2.543653 GGTGCCTGTTTCAACATGTGAC 60.544 50.000 0.00 0.00 38.41 3.67
7877 7961 4.036262 TGTTTCAACATGTGACTGTTAGGC 59.964 41.667 0.00 0.00 37.25 3.93
7885 7969 2.076863 GTGACTGTTAGGCGATGCTTT 58.923 47.619 0.00 0.00 0.00 3.51
7915 7999 7.060383 ACCTGTGATTATTAGGAGATGACAG 57.940 40.000 0.00 0.00 35.55 3.51
7924 8008 3.113191 AGGAGATGACAGATCAGGTGT 57.887 47.619 0.00 0.00 38.57 4.16
7926 8010 2.548875 GAGATGACAGATCAGGTGTGC 58.451 52.381 0.00 0.00 38.57 4.57
8008 8094 7.966812 TCTAATTAGTGCATACATGTCCAGAT 58.033 34.615 12.19 0.00 0.00 2.90
8059 8145 2.821378 TCTTGTCGATACTCCGTTCCAA 59.179 45.455 0.00 0.00 0.00 3.53
8121 8208 7.882755 TCAGGAATGGGATCTTTTATTACCTT 58.117 34.615 0.00 0.00 0.00 3.50
8160 8249 1.202806 AGAGTGTAGCAAGCCAGCAAA 60.203 47.619 0.55 0.00 36.85 3.68
8175 8264 5.595542 AGCCAGCAAAAGCATATATTCAAGA 59.404 36.000 0.00 0.00 0.00 3.02
8194 8283 5.296780 TCAAGACTTGCATTTTTCGAAGAGT 59.703 36.000 10.50 0.00 38.43 3.24
8405 8494 2.835156 AGACCTAGGACTTCAGCTTTCC 59.165 50.000 17.98 0.00 0.00 3.13
8462 8551 3.844804 TCCACAGGTCTCACTCTAGTCTA 59.155 47.826 0.00 0.00 0.00 2.59
8477 8566 5.227908 TCTAGTCTAGTTTGGCAAAGAACG 58.772 41.667 13.94 2.72 0.00 3.95
8505 8594 5.316770 GTCGCTGCATACACTTCTTTTTAG 58.683 41.667 0.00 0.00 0.00 1.85
8519 8608 5.920193 TCTTTTTAGGGAATGCCATTCAG 57.080 39.130 18.55 6.12 41.03 3.02
8536 8625 6.626623 GCCATTCAGCTGTCTTTGTTGATTAT 60.627 38.462 14.67 0.00 0.00 1.28
8556 8645 9.051679 TGATTATCAAGAATGGTTACATTACCG 57.948 33.333 0.00 0.00 46.89 4.02
8569 8658 6.238293 GGTTACATTACCGCCTATTTCAAGTC 60.238 42.308 0.00 0.00 0.00 3.01
8576 8665 1.604278 GCCTATTTCAAGTCGATGGGC 59.396 52.381 0.00 0.00 39.67 5.36
8636 8725 6.998074 AGGAACTGTCACAAAGTTTATCATCA 59.002 34.615 0.00 0.00 37.98 3.07
8702 8791 4.395231 GGTAGAAACAAAGGGGAGAATTCG 59.605 45.833 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.827756 TGGGGGTGTTTTGGTTTTATTTTT 58.172 33.333 0.00 0.00 0.00 1.94
43 44 5.452341 TGGGGGTGTTTTGGTTTTATTTT 57.548 34.783 0.00 0.00 0.00 1.82
44 45 5.452341 TTGGGGGTGTTTTGGTTTTATTT 57.548 34.783 0.00 0.00 0.00 1.40
45 46 5.194432 GTTTGGGGGTGTTTTGGTTTTATT 58.806 37.500 0.00 0.00 0.00 1.40
46 47 4.227527 TGTTTGGGGGTGTTTTGGTTTTAT 59.772 37.500 0.00 0.00 0.00 1.40
47 48 3.585732 TGTTTGGGGGTGTTTTGGTTTTA 59.414 39.130 0.00 0.00 0.00 1.52
48 49 2.375509 TGTTTGGGGGTGTTTTGGTTTT 59.624 40.909 0.00 0.00 0.00 2.43
49 50 1.985895 TGTTTGGGGGTGTTTTGGTTT 59.014 42.857 0.00 0.00 0.00 3.27
50 51 1.657804 TGTTTGGGGGTGTTTTGGTT 58.342 45.000 0.00 0.00 0.00 3.67
51 52 1.886422 ATGTTTGGGGGTGTTTTGGT 58.114 45.000 0.00 0.00 0.00 3.67
52 53 3.289407 AAATGTTTGGGGGTGTTTTGG 57.711 42.857 0.00 0.00 0.00 3.28
53 54 5.029807 ACTAAATGTTTGGGGGTGTTTTG 57.970 39.130 0.00 0.00 0.00 2.44
54 55 5.070714 GGTACTAAATGTTTGGGGGTGTTTT 59.929 40.000 0.00 0.00 0.00 2.43
55 56 4.589798 GGTACTAAATGTTTGGGGGTGTTT 59.410 41.667 0.00 0.00 0.00 2.83
56 57 4.154176 GGTACTAAATGTTTGGGGGTGTT 58.846 43.478 0.00 0.00 0.00 3.32
57 58 3.770046 GGTACTAAATGTTTGGGGGTGT 58.230 45.455 0.00 0.00 0.00 4.16
58 59 2.750712 CGGTACTAAATGTTTGGGGGTG 59.249 50.000 0.00 0.00 0.00 4.61
59 60 2.291089 CCGGTACTAAATGTTTGGGGGT 60.291 50.000 0.00 0.00 0.00 4.95
60 61 2.291089 ACCGGTACTAAATGTTTGGGGG 60.291 50.000 4.49 0.00 0.00 5.40
61 62 3.076079 ACCGGTACTAAATGTTTGGGG 57.924 47.619 4.49 0.00 0.00 4.96
62 63 3.191791 CCAACCGGTACTAAATGTTTGGG 59.808 47.826 8.00 0.00 31.35 4.12
63 64 3.822167 ACCAACCGGTACTAAATGTTTGG 59.178 43.478 8.00 10.60 46.71 3.28
64 65 4.276431 ACACCAACCGGTACTAAATGTTTG 59.724 41.667 8.00 3.32 46.94 2.93
65 66 4.463070 ACACCAACCGGTACTAAATGTTT 58.537 39.130 8.00 0.00 46.94 2.83
66 67 4.089408 ACACCAACCGGTACTAAATGTT 57.911 40.909 8.00 0.00 46.94 2.71
67 68 3.775261 ACACCAACCGGTACTAAATGT 57.225 42.857 8.00 4.16 46.94 2.71
68 69 4.392754 GGTAACACCAACCGGTACTAAATG 59.607 45.833 8.00 0.00 46.94 2.32
69 70 4.578871 GGTAACACCAACCGGTACTAAAT 58.421 43.478 8.00 0.00 46.94 1.40
70 71 4.001618 GGTAACACCAACCGGTACTAAA 57.998 45.455 8.00 0.00 46.94 1.85
71 72 3.676291 GGTAACACCAACCGGTACTAA 57.324 47.619 8.00 0.00 46.94 2.24
90 91 3.448301 TGTAGGACATTAGTACCGGTTGG 59.552 47.826 15.04 0.00 42.84 3.77
91 92 4.427312 GTGTAGGACATTAGTACCGGTTG 58.573 47.826 15.04 7.13 0.00 3.77
92 93 3.129287 CGTGTAGGACATTAGTACCGGTT 59.871 47.826 15.04 0.00 0.00 4.44
93 94 2.684881 CGTGTAGGACATTAGTACCGGT 59.315 50.000 13.98 13.98 0.00 5.28
94 95 2.542411 GCGTGTAGGACATTAGTACCGG 60.542 54.545 0.00 0.00 0.00 5.28
95 96 2.097954 TGCGTGTAGGACATTAGTACCG 59.902 50.000 0.00 0.00 0.00 4.02
96 97 3.442100 GTGCGTGTAGGACATTAGTACC 58.558 50.000 0.00 0.00 41.21 3.34
97 98 3.442100 GGTGCGTGTAGGACATTAGTAC 58.558 50.000 0.00 0.00 43.57 2.73
98 99 2.428171 GGGTGCGTGTAGGACATTAGTA 59.572 50.000 0.00 0.00 43.57 1.82
99 100 1.206371 GGGTGCGTGTAGGACATTAGT 59.794 52.381 0.00 0.00 43.57 2.24
100 101 1.801395 CGGGTGCGTGTAGGACATTAG 60.801 57.143 0.00 0.00 43.57 1.73
101 102 0.173935 CGGGTGCGTGTAGGACATTA 59.826 55.000 0.00 0.00 43.57 1.90
102 103 1.079405 CGGGTGCGTGTAGGACATT 60.079 57.895 0.00 0.00 43.57 2.71
103 104 2.577059 CGGGTGCGTGTAGGACAT 59.423 61.111 0.00 0.00 43.57 3.06
104 105 3.687102 CCGGGTGCGTGTAGGACA 61.687 66.667 0.00 0.00 43.57 4.02
105 106 4.446413 CCCGGGTGCGTGTAGGAC 62.446 72.222 14.18 0.00 40.80 3.85
135 136 1.574428 GCTAAAGTGCCACCACGTG 59.426 57.895 9.08 9.08 46.62 4.49
136 137 1.959226 CGCTAAAGTGCCACCACGT 60.959 57.895 0.00 0.00 46.62 4.49
137 138 2.860293 CGCTAAAGTGCCACCACG 59.140 61.111 0.00 0.00 46.62 4.94
138 139 2.561373 GCGCTAAAGTGCCACCAC 59.439 61.111 0.00 0.00 45.15 4.16
145 146 2.025418 ACGAACCGGCGCTAAAGTG 61.025 57.895 7.64 0.00 33.86 3.16
146 147 2.025418 CACGAACCGGCGCTAAAGT 61.025 57.895 7.64 0.00 33.86 2.66
147 148 1.735198 TCACGAACCGGCGCTAAAG 60.735 57.895 7.64 0.00 33.86 1.85
148 149 2.023223 GTCACGAACCGGCGCTAAA 61.023 57.895 7.64 0.00 33.86 1.85
149 150 2.431260 GTCACGAACCGGCGCTAA 60.431 61.111 7.64 0.00 33.86 3.09
150 151 4.764336 CGTCACGAACCGGCGCTA 62.764 66.667 7.64 0.00 33.86 4.26
159 160 4.406069 CTTTAGTATCGGTTCGTCACGAA 58.594 43.478 9.01 9.01 43.75 3.85
160 161 3.181507 CCTTTAGTATCGGTTCGTCACGA 60.182 47.826 0.00 0.00 43.85 4.35
161 162 3.103738 CCTTTAGTATCGGTTCGTCACG 58.896 50.000 0.00 0.00 0.00 4.35
162 163 3.442100 CCCTTTAGTATCGGTTCGTCAC 58.558 50.000 0.00 0.00 0.00 3.67
163 164 2.428171 CCCCTTTAGTATCGGTTCGTCA 59.572 50.000 0.00 0.00 0.00 4.35
164 165 2.223900 CCCCCTTTAGTATCGGTTCGTC 60.224 54.545 0.00 0.00 0.00 4.20
165 166 1.758862 CCCCCTTTAGTATCGGTTCGT 59.241 52.381 0.00 0.00 0.00 3.85
166 167 2.034124 TCCCCCTTTAGTATCGGTTCG 58.966 52.381 0.00 0.00 0.00 3.95
167 168 2.103771 GGTCCCCCTTTAGTATCGGTTC 59.896 54.545 0.00 0.00 0.00 3.62
168 169 2.121948 GGTCCCCCTTTAGTATCGGTT 58.878 52.381 0.00 0.00 0.00 4.44
169 170 1.293153 AGGTCCCCCTTTAGTATCGGT 59.707 52.381 0.00 0.00 38.13 4.69
170 171 2.098618 AGGTCCCCCTTTAGTATCGG 57.901 55.000 0.00 0.00 38.13 4.18
185 186 4.531339 ACTAAAGAGTGGGGACTAAAGGTC 59.469 45.833 0.00 0.00 38.17 3.85
186 187 4.500452 ACTAAAGAGTGGGGACTAAAGGT 58.500 43.478 0.00 0.00 33.41 3.50
199 200 1.542547 CCACAACCGGCACTAAAGAGT 60.543 52.381 0.00 0.00 35.80 3.24
200 201 1.156736 CCACAACCGGCACTAAAGAG 58.843 55.000 0.00 0.00 0.00 2.85
201 202 0.759959 TCCACAACCGGCACTAAAGA 59.240 50.000 0.00 0.00 0.00 2.52
202 203 1.265905 GTTCCACAACCGGCACTAAAG 59.734 52.381 0.00 0.00 0.00 1.85
203 204 1.310904 GTTCCACAACCGGCACTAAA 58.689 50.000 0.00 0.00 0.00 1.85
204 205 0.535553 GGTTCCACAACCGGCACTAA 60.536 55.000 0.00 0.00 43.00 2.24
205 206 1.071814 GGTTCCACAACCGGCACTA 59.928 57.895 0.00 0.00 43.00 2.74
206 207 2.203294 GGTTCCACAACCGGCACT 60.203 61.111 0.00 0.00 43.00 4.40
213 214 1.265905 CTTTAGTGCCGGTTCCACAAC 59.734 52.381 12.43 0.00 35.69 3.32
214 215 1.600023 CTTTAGTGCCGGTTCCACAA 58.400 50.000 12.43 3.39 35.69 3.33
215 216 0.250553 CCTTTAGTGCCGGTTCCACA 60.251 55.000 12.43 0.00 35.69 4.17
216 217 1.583495 GCCTTTAGTGCCGGTTCCAC 61.583 60.000 1.90 2.40 0.00 4.02
217 218 1.302993 GCCTTTAGTGCCGGTTCCA 60.303 57.895 1.90 0.00 0.00 3.53
218 219 2.044555 GGCCTTTAGTGCCGGTTCC 61.045 63.158 1.90 0.00 39.48 3.62
219 220 3.587095 GGCCTTTAGTGCCGGTTC 58.413 61.111 1.90 0.00 39.48 3.62
225 226 1.736126 GTTCGTAAGGGCCTTTAGTGC 59.264 52.381 26.29 8.97 38.47 4.40
226 227 3.000727 CAGTTCGTAAGGGCCTTTAGTG 58.999 50.000 26.29 15.62 38.47 2.74
227 228 2.027469 CCAGTTCGTAAGGGCCTTTAGT 60.027 50.000 26.29 1.50 38.47 2.24
228 229 2.629051 CCAGTTCGTAAGGGCCTTTAG 58.371 52.381 26.29 18.30 38.47 1.85
229 230 1.339342 GCCAGTTCGTAAGGGCCTTTA 60.339 52.381 26.29 2.60 40.55 1.85
230 231 0.608308 GCCAGTTCGTAAGGGCCTTT 60.608 55.000 26.29 5.08 40.55 3.11
231 232 1.002502 GCCAGTTCGTAAGGGCCTT 60.003 57.895 24.44 24.44 40.55 4.35
232 233 2.669240 GCCAGTTCGTAAGGGCCT 59.331 61.111 0.00 0.00 40.55 5.19
233 234 2.818274 CGCCAGTTCGTAAGGGCC 60.818 66.667 0.00 0.00 43.50 5.80
234 235 2.567564 TAGCGCCAGTTCGTAAGGGC 62.568 60.000 2.29 0.00 42.98 5.19
235 236 0.108520 TTAGCGCCAGTTCGTAAGGG 60.109 55.000 2.29 0.00 38.47 3.95
236 237 1.659098 CTTTAGCGCCAGTTCGTAAGG 59.341 52.381 2.29 0.00 38.47 2.69
237 238 1.060698 GCTTTAGCGCCAGTTCGTAAG 59.939 52.381 2.29 0.00 0.00 2.34
238 239 1.073177 GCTTTAGCGCCAGTTCGTAA 58.927 50.000 2.29 0.00 0.00 3.18
239 240 2.745728 GCTTTAGCGCCAGTTCGTA 58.254 52.632 2.29 0.00 0.00 3.43
240 241 3.562635 GCTTTAGCGCCAGTTCGT 58.437 55.556 2.29 0.00 0.00 3.85
249 250 2.750888 GCAGAACCGGGCTTTAGCG 61.751 63.158 6.32 0.00 43.26 4.26
250 251 1.674322 TGCAGAACCGGGCTTTAGC 60.674 57.895 6.32 3.45 41.14 3.09
251 252 0.321653 AGTGCAGAACCGGGCTTTAG 60.322 55.000 6.32 0.00 0.00 1.85
252 253 0.978151 TAGTGCAGAACCGGGCTTTA 59.022 50.000 6.32 0.00 0.00 1.85
253 254 0.321653 CTAGTGCAGAACCGGGCTTT 60.322 55.000 6.32 0.00 0.00 3.51
254 255 1.192146 TCTAGTGCAGAACCGGGCTT 61.192 55.000 6.32 0.00 0.00 4.35
255 256 1.608717 CTCTAGTGCAGAACCGGGCT 61.609 60.000 6.32 0.00 31.12 5.19
256 257 1.153549 CTCTAGTGCAGAACCGGGC 60.154 63.158 6.32 0.00 31.12 6.13
257 258 0.895530 TTCTCTAGTGCAGAACCGGG 59.104 55.000 6.32 0.00 31.12 5.73
258 259 1.819288 TCTTCTCTAGTGCAGAACCGG 59.181 52.381 0.00 0.00 31.12 5.28
259 260 3.057174 AGTTCTTCTCTAGTGCAGAACCG 60.057 47.826 24.30 4.05 44.20 4.44
260 261 4.490743 GAGTTCTTCTCTAGTGCAGAACC 58.509 47.826 24.30 16.15 44.20 3.62
273 274 8.423906 TCAAATAGTAGTTGGAGAGTTCTTCT 57.576 34.615 10.24 0.00 39.43 2.85
274 275 9.490379 TTTCAAATAGTAGTTGGAGAGTTCTTC 57.510 33.333 10.24 0.00 0.00 2.87
275 276 9.847224 TTTTCAAATAGTAGTTGGAGAGTTCTT 57.153 29.630 10.24 0.00 0.00 2.52
311 312 8.441312 TTGTAAAATCGTGGAGTAGTCTTTTT 57.559 30.769 0.00 0.82 0.00 1.94
312 313 8.504005 CATTGTAAAATCGTGGAGTAGTCTTTT 58.496 33.333 0.00 0.00 0.00 2.27
313 314 7.660208 ACATTGTAAAATCGTGGAGTAGTCTTT 59.340 33.333 0.00 0.00 0.00 2.52
314 315 7.159372 ACATTGTAAAATCGTGGAGTAGTCTT 58.841 34.615 0.00 0.00 0.00 3.01
315 316 6.698380 ACATTGTAAAATCGTGGAGTAGTCT 58.302 36.000 0.00 0.00 0.00 3.24
316 317 6.963049 ACATTGTAAAATCGTGGAGTAGTC 57.037 37.500 0.00 0.00 0.00 2.59
317 318 7.609056 ACTACATTGTAAAATCGTGGAGTAGT 58.391 34.615 0.00 0.00 32.41 2.73
318 319 8.475331 AACTACATTGTAAAATCGTGGAGTAG 57.525 34.615 0.00 0.00 33.00 2.57
319 320 7.274033 CGAACTACATTGTAAAATCGTGGAGTA 59.726 37.037 13.29 0.00 33.00 2.59
320 321 6.090358 CGAACTACATTGTAAAATCGTGGAGT 59.910 38.462 13.29 0.00 35.56 3.85
321 322 6.090358 ACGAACTACATTGTAAAATCGTGGAG 59.910 38.462 20.85 3.44 40.35 3.86
322 323 5.927689 ACGAACTACATTGTAAAATCGTGGA 59.072 36.000 20.85 0.00 40.35 4.02
323 324 6.160664 ACGAACTACATTGTAAAATCGTGG 57.839 37.500 20.85 6.65 40.35 4.94
359 360 9.698309 TCAAAGTTTGTAATGTTTGACTTTTGA 57.302 25.926 15.08 0.00 35.75 2.69
362 363 9.868277 TGATCAAAGTTTGTAATGTTTGACTTT 57.132 25.926 15.08 0.00 40.67 2.66
364 365 9.467258 CATGATCAAAGTTTGTAATGTTTGACT 57.533 29.630 15.08 0.00 40.67 3.41
365 366 9.248291 ACATGATCAAAGTTTGTAATGTTTGAC 57.752 29.630 15.08 0.00 40.67 3.18
366 367 9.814899 AACATGATCAAAGTTTGTAATGTTTGA 57.185 25.926 24.39 5.82 41.74 2.69
373 374 9.944663 GTCTGTAAACATGATCAAAGTTTGTAA 57.055 29.630 26.90 16.67 36.29 2.41
374 375 9.114952 TGTCTGTAAACATGATCAAAGTTTGTA 57.885 29.630 26.90 18.60 36.29 2.41
375 376 7.995289 TGTCTGTAAACATGATCAAAGTTTGT 58.005 30.769 26.90 14.17 36.29 2.83
376 377 8.854979 TTGTCTGTAAACATGATCAAAGTTTG 57.145 30.769 26.90 9.44 36.29 2.93
377 378 9.868277 TTTTGTCTGTAAACATGATCAAAGTTT 57.132 25.926 24.16 24.16 38.79 2.66
378 379 9.868277 TTTTTGTCTGTAAACATGATCAAAGTT 57.132 25.926 0.00 5.23 0.00 2.66
404 405 9.811995 TGCGTTTAGTATTTTGAGTCTACATAT 57.188 29.630 0.00 0.00 0.00 1.78
405 406 9.811995 ATGCGTTTAGTATTTTGAGTCTACATA 57.188 29.630 0.00 0.00 0.00 2.29
406 407 8.718102 ATGCGTTTAGTATTTTGAGTCTACAT 57.282 30.769 0.00 0.00 0.00 2.29
407 408 9.811995 ATATGCGTTTAGTATTTTGAGTCTACA 57.188 29.630 0.00 0.00 0.00 2.74
410 411 8.818057 GTGATATGCGTTTAGTATTTTGAGTCT 58.182 33.333 0.00 0.00 0.00 3.24
411 412 8.818057 AGTGATATGCGTTTAGTATTTTGAGTC 58.182 33.333 0.00 0.00 0.00 3.36
412 413 8.604035 CAGTGATATGCGTTTAGTATTTTGAGT 58.396 33.333 0.00 0.00 0.00 3.41
413 414 8.064222 CCAGTGATATGCGTTTAGTATTTTGAG 58.936 37.037 0.00 0.00 0.00 3.02
414 415 7.766738 TCCAGTGATATGCGTTTAGTATTTTGA 59.233 33.333 0.00 0.00 0.00 2.69
415 416 7.915508 TCCAGTGATATGCGTTTAGTATTTTG 58.084 34.615 0.00 0.00 0.00 2.44
416 417 8.677148 ATCCAGTGATATGCGTTTAGTATTTT 57.323 30.769 0.00 0.00 0.00 1.82
417 418 9.204570 GTATCCAGTGATATGCGTTTAGTATTT 57.795 33.333 0.00 0.00 35.94 1.40
418 419 8.364894 TGTATCCAGTGATATGCGTTTAGTATT 58.635 33.333 0.00 0.00 35.94 1.89
419 420 7.892609 TGTATCCAGTGATATGCGTTTAGTAT 58.107 34.615 0.00 0.00 35.94 2.12
420 421 7.279750 TGTATCCAGTGATATGCGTTTAGTA 57.720 36.000 0.00 0.00 35.94 1.82
421 422 6.156748 TGTATCCAGTGATATGCGTTTAGT 57.843 37.500 0.00 0.00 35.94 2.24
422 423 6.033937 CGATGTATCCAGTGATATGCGTTTAG 59.966 42.308 0.00 0.00 35.94 1.85
423 424 5.861787 CGATGTATCCAGTGATATGCGTTTA 59.138 40.000 0.00 0.00 35.94 2.01
424 425 4.686091 CGATGTATCCAGTGATATGCGTTT 59.314 41.667 0.00 0.00 35.94 3.60
425 426 4.237724 CGATGTATCCAGTGATATGCGTT 58.762 43.478 0.00 0.00 35.94 4.84
426 427 3.255888 ACGATGTATCCAGTGATATGCGT 59.744 43.478 0.00 0.00 35.94 5.24
427 428 3.838120 ACGATGTATCCAGTGATATGCG 58.162 45.455 0.00 0.00 35.94 4.73
428 429 3.854240 CGACGATGTATCCAGTGATATGC 59.146 47.826 0.00 0.00 35.94 3.14
429 430 4.082733 ACCGACGATGTATCCAGTGATATG 60.083 45.833 0.00 0.00 35.94 1.78
430 431 4.079970 ACCGACGATGTATCCAGTGATAT 58.920 43.478 0.00 0.00 35.94 1.63
431 432 3.483421 ACCGACGATGTATCCAGTGATA 58.517 45.455 0.00 0.00 32.18 2.15
432 433 2.307768 ACCGACGATGTATCCAGTGAT 58.692 47.619 0.00 0.00 34.87 3.06
433 434 1.758936 ACCGACGATGTATCCAGTGA 58.241 50.000 0.00 0.00 0.00 3.41
434 435 2.579207 AACCGACGATGTATCCAGTG 57.421 50.000 0.00 0.00 0.00 3.66
435 436 4.931661 AATAACCGACGATGTATCCAGT 57.068 40.909 0.00 0.00 0.00 4.00
436 437 6.598753 AAAAATAACCGACGATGTATCCAG 57.401 37.500 0.00 0.00 0.00 3.86
490 491 9.720769 TGACCGAATTTAGAGAGAAAACTATTT 57.279 29.630 0.00 0.00 0.00 1.40
491 492 9.720769 TTGACCGAATTTAGAGAGAAAACTATT 57.279 29.630 0.00 0.00 0.00 1.73
492 493 9.720769 TTTGACCGAATTTAGAGAGAAAACTAT 57.279 29.630 0.00 0.00 0.00 2.12
493 494 9.204570 CTTTGACCGAATTTAGAGAGAAAACTA 57.795 33.333 0.00 0.00 0.00 2.24
494 495 7.715686 ACTTTGACCGAATTTAGAGAGAAAACT 59.284 33.333 0.00 0.00 0.00 2.66
495 496 7.862648 ACTTTGACCGAATTTAGAGAGAAAAC 58.137 34.615 0.00 0.00 0.00 2.43
496 497 8.446599 AACTTTGACCGAATTTAGAGAGAAAA 57.553 30.769 0.00 0.00 0.00 2.29
497 498 8.342634 CAAACTTTGACCGAATTTAGAGAGAAA 58.657 33.333 0.00 0.00 0.00 2.52
498 499 7.519970 GCAAACTTTGACCGAATTTAGAGAGAA 60.520 37.037 5.65 0.00 0.00 2.87
499 500 6.073222 GCAAACTTTGACCGAATTTAGAGAGA 60.073 38.462 5.65 0.00 0.00 3.10
500 501 6.073003 AGCAAACTTTGACCGAATTTAGAGAG 60.073 38.462 5.65 0.00 0.00 3.20
501 502 5.763204 AGCAAACTTTGACCGAATTTAGAGA 59.237 36.000 5.65 0.00 0.00 3.10
502 503 6.002062 AGCAAACTTTGACCGAATTTAGAG 57.998 37.500 5.65 0.00 0.00 2.43
503 504 6.385649 AAGCAAACTTTGACCGAATTTAGA 57.614 33.333 5.65 0.00 29.41 2.10
504 505 8.742554 ATTAAGCAAACTTTGACCGAATTTAG 57.257 30.769 5.65 0.00 37.33 1.85
505 506 9.535878 AAATTAAGCAAACTTTGACCGAATTTA 57.464 25.926 5.65 0.00 37.33 1.40
506 507 8.432110 AAATTAAGCAAACTTTGACCGAATTT 57.568 26.923 5.65 7.89 37.33 1.82
507 508 9.535878 TTAAATTAAGCAAACTTTGACCGAATT 57.464 25.926 5.65 2.97 37.33 2.17
508 509 8.974408 GTTAAATTAAGCAAACTTTGACCGAAT 58.026 29.630 5.65 0.00 37.33 3.34
509 510 8.192110 AGTTAAATTAAGCAAACTTTGACCGAA 58.808 29.630 5.65 0.00 37.33 4.30
510 511 7.708998 AGTTAAATTAAGCAAACTTTGACCGA 58.291 30.769 5.65 0.00 37.33 4.69
511 512 7.924103 AGTTAAATTAAGCAAACTTTGACCG 57.076 32.000 5.65 0.00 37.33 4.79
544 545 8.443160 CGTTCCATAATATTGTGCGAATAGATT 58.557 33.333 14.48 0.00 0.00 2.40
545 546 7.064609 CCGTTCCATAATATTGTGCGAATAGAT 59.935 37.037 14.48 0.00 0.00 1.98
546 547 6.367695 CCGTTCCATAATATTGTGCGAATAGA 59.632 38.462 14.48 2.54 0.00 1.98
547 548 6.402118 CCCGTTCCATAATATTGTGCGAATAG 60.402 42.308 14.48 12.38 0.00 1.73
548 549 5.410132 CCCGTTCCATAATATTGTGCGAATA 59.590 40.000 14.48 0.00 0.00 1.75
549 550 4.215399 CCCGTTCCATAATATTGTGCGAAT 59.785 41.667 14.48 0.00 0.00 3.34
550 551 3.562141 CCCGTTCCATAATATTGTGCGAA 59.438 43.478 6.68 8.73 0.00 4.70
551 552 3.135225 CCCGTTCCATAATATTGTGCGA 58.865 45.455 6.68 3.57 0.00 5.10
552 553 2.350388 GCCCGTTCCATAATATTGTGCG 60.350 50.000 6.68 5.44 0.00 5.34
553 554 2.621055 TGCCCGTTCCATAATATTGTGC 59.379 45.455 6.68 0.00 0.00 4.57
554 555 4.024048 GTCTGCCCGTTCCATAATATTGTG 60.024 45.833 5.27 5.27 0.00 3.33
555 556 4.134563 GTCTGCCCGTTCCATAATATTGT 58.865 43.478 0.00 0.00 0.00 2.71
556 557 3.186409 CGTCTGCCCGTTCCATAATATTG 59.814 47.826 0.00 0.00 0.00 1.90
557 558 3.070446 TCGTCTGCCCGTTCCATAATATT 59.930 43.478 0.00 0.00 0.00 1.28
558 559 2.631062 TCGTCTGCCCGTTCCATAATAT 59.369 45.455 0.00 0.00 0.00 1.28
559 560 2.033372 TCGTCTGCCCGTTCCATAATA 58.967 47.619 0.00 0.00 0.00 0.98
560 561 0.828022 TCGTCTGCCCGTTCCATAAT 59.172 50.000 0.00 0.00 0.00 1.28
561 562 0.828022 ATCGTCTGCCCGTTCCATAA 59.172 50.000 0.00 0.00 0.00 1.90
562 563 0.387929 GATCGTCTGCCCGTTCCATA 59.612 55.000 0.00 0.00 0.00 2.74
563 564 1.144057 GATCGTCTGCCCGTTCCAT 59.856 57.895 0.00 0.00 0.00 3.41
564 565 2.279810 TGATCGTCTGCCCGTTCCA 61.280 57.895 0.00 0.00 0.00 3.53
565 566 1.810030 GTGATCGTCTGCCCGTTCC 60.810 63.158 0.00 0.00 0.00 3.62
566 567 1.810030 GGTGATCGTCTGCCCGTTC 60.810 63.158 0.00 0.00 0.00 3.95
567 568 2.264794 GGTGATCGTCTGCCCGTT 59.735 61.111 0.00 0.00 0.00 4.44
568 569 2.994995 TGGTGATCGTCTGCCCGT 60.995 61.111 0.00 0.00 0.00 5.28
569 570 2.509336 GTGGTGATCGTCTGCCCG 60.509 66.667 0.00 0.00 0.00 6.13
570 571 2.125106 GGTGGTGATCGTCTGCCC 60.125 66.667 0.00 0.00 0.00 5.36
571 572 2.509336 CGGTGGTGATCGTCTGCC 60.509 66.667 0.00 0.00 0.00 4.85
572 573 3.188786 GCGGTGGTGATCGTCTGC 61.189 66.667 0.00 0.00 0.00 4.26
573 574 2.509336 GGCGGTGGTGATCGTCTG 60.509 66.667 0.00 0.00 0.00 3.51
574 575 1.899437 AATGGCGGTGGTGATCGTCT 61.899 55.000 0.00 0.00 29.14 4.18
575 576 1.024579 AAATGGCGGTGGTGATCGTC 61.025 55.000 0.00 0.00 0.00 4.20
576 577 1.002624 AAATGGCGGTGGTGATCGT 60.003 52.632 0.00 0.00 0.00 3.73
577 578 1.429021 CAAATGGCGGTGGTGATCG 59.571 57.895 0.00 0.00 0.00 3.69
578 579 0.679640 TCCAAATGGCGGTGGTGATC 60.680 55.000 0.00 0.00 36.23 2.92
579 580 0.251564 TTCCAAATGGCGGTGGTGAT 60.252 50.000 0.00 0.00 36.23 3.06
585 586 1.698506 TCAAAGTTCCAAATGGCGGT 58.301 45.000 0.00 0.00 34.44 5.68
650 655 1.296392 GGTGGGAAAAGCATTGGGC 59.704 57.895 0.00 0.00 45.30 5.36
902 920 4.862823 GAGGGAGGGGGAGGGTCG 62.863 77.778 0.00 0.00 0.00 4.79
903 921 4.500826 GGAGGGAGGGGGAGGGTC 62.501 77.778 0.00 0.00 0.00 4.46
1082 1113 5.922544 CGAATCATGCTAAATCCCCAAATTC 59.077 40.000 0.00 0.00 0.00 2.17
1133 1164 2.509336 CGGTGCAGAAGCTACCCG 60.509 66.667 0.00 0.00 42.74 5.28
1140 1171 1.005294 GCAATGTTGCGGTGCAGAAG 61.005 55.000 1.53 0.00 45.11 2.85
1459 1501 1.302285 CATCCTGGTTCTGCAGCCT 59.698 57.895 9.47 0.00 0.00 4.58
1524 1566 1.134670 AGGCTTAGGATGTCAAGCGAC 60.135 52.381 0.00 0.00 46.50 5.19
1565 1607 2.672996 GGCCATTGCGGTGACTGT 60.673 61.111 0.00 0.00 38.85 3.55
2078 2131 2.119886 CCTCTAGAGGGGAAGCACG 58.880 63.158 28.68 1.80 44.87 5.34
2202 2255 6.923012 TCTGTGCTAAACATGCAATACAATT 58.077 32.000 0.00 0.00 42.41 2.32
2395 2451 3.009473 AGGCTGAGAACCTGCAAAATAGA 59.991 43.478 0.00 0.00 40.95 1.98
2441 2497 8.531982 ACTAGATCAATTAAGCACACTCTTACA 58.468 33.333 0.00 0.00 0.00 2.41
2442 2498 8.812329 CACTAGATCAATTAAGCACACTCTTAC 58.188 37.037 0.00 0.00 0.00 2.34
2557 2613 5.131642 AGTTATTGGATGGATGAGCAAGAGA 59.868 40.000 0.00 0.00 0.00 3.10
2674 2730 7.122353 ACGTATAAACCTGAACTATGACTCAGT 59.878 37.037 0.00 0.00 37.89 3.41
3210 3267 8.642935 TGACCTTGTAAATCATAACAATTCCA 57.357 30.769 0.00 0.00 35.21 3.53
3245 3302 7.484035 ACAACTCTACTTGACATGAGAAAAC 57.516 36.000 0.00 0.00 0.00 2.43
3339 3396 5.228945 TCAAGGCTAGTAAGTCAAAAGCT 57.771 39.130 0.00 0.00 33.67 3.74
3542 3599 9.077885 TGCCTCTCATTTTAACTTCTTTACATT 57.922 29.630 0.00 0.00 0.00 2.71
3556 3613 4.500375 GCACTGAAAACTGCCTCTCATTTT 60.500 41.667 0.00 0.00 0.00 1.82
3563 3620 4.503741 TTATTGCACTGAAAACTGCCTC 57.496 40.909 0.00 0.00 31.97 4.70
3632 3690 9.023967 CAAACTAGAAAGACAGTTTTTCATTGG 57.976 33.333 16.71 4.16 41.78 3.16
3700 3758 4.755266 TTATTCTAGGTCTCAAGGGCAC 57.245 45.455 0.00 0.00 0.00 5.01
3770 3828 2.098607 CCTTAAGTAGCGACACGATGGA 59.901 50.000 0.97 0.00 0.00 3.41
3873 3938 6.325919 AGTCCTGCAAAAACGAAATAATCA 57.674 33.333 0.00 0.00 0.00 2.57
3882 3947 3.982576 AGGTAAAGTCCTGCAAAAACG 57.017 42.857 0.00 0.00 36.35 3.60
4130 4195 2.024414 GAATAAAATGGAGCCAGCGGT 58.976 47.619 0.00 0.00 0.00 5.68
4343 4411 3.561143 ACTACCCATTTTGTGTGAAGCA 58.439 40.909 0.00 0.00 0.00 3.91
4418 4486 4.352001 TCCTCATCCCCAGGATAAAGATTG 59.648 45.833 0.00 0.00 40.98 2.67
4450 4518 5.198602 ACCTTTTGGAGCTTGAGGATTAT 57.801 39.130 8.25 0.00 44.07 1.28
4493 4561 6.210584 TGGCCATACTCGATAATAAGATGACA 59.789 38.462 0.00 0.00 0.00 3.58
4801 4869 5.841957 AGTTCTTGTTGAAGTTCTGCAAT 57.158 34.783 4.17 0.00 34.90 3.56
4861 4929 9.255304 GTGCATTGAAATAAGGAAAACACTAAA 57.745 29.630 0.00 0.00 0.00 1.85
4915 4983 7.698163 AGTTAGAGATCAATTGGGGAAGTAT 57.302 36.000 5.42 0.00 0.00 2.12
5776 5856 8.438513 GCATGCATAACATTATACTCTGTACAG 58.561 37.037 17.17 17.17 36.64 2.74
5802 5882 6.899114 AGGAAGACAACTTAGTTTAAATGCG 58.101 36.000 0.00 0.00 36.39 4.73
5864 5944 5.007682 ACAGACAGTGTTGGTTTGTTACTT 58.992 37.500 0.00 0.00 34.94 2.24
5867 5947 7.450124 TTTTACAGACAGTGTTGGTTTGTTA 57.550 32.000 0.00 0.00 40.94 2.41
5943 6023 6.634436 GCATCGACATTTGGAATATCAAACTC 59.366 38.462 0.00 0.00 39.13 3.01
5961 6041 5.464722 ACATTTCATCTAGATGTGCATCGAC 59.535 40.000 27.80 0.00 42.48 4.20
6302 6382 2.422479 GTCATACGCACTGTCAGGTCTA 59.578 50.000 4.53 0.00 0.00 2.59
6390 6470 3.636231 CGGAAGGTCCCTGGCACA 61.636 66.667 0.00 0.00 31.13 4.57
6397 6477 0.322546 AATGTTGCTCGGAAGGTCCC 60.323 55.000 0.00 0.00 31.13 4.46
7283 7367 4.985409 CGCCTGATATTACCTTCTTCTCAC 59.015 45.833 0.00 0.00 0.00 3.51
7392 7476 3.853307 GCTTGTCCTTCATTGGTGTTTCG 60.853 47.826 0.00 0.00 0.00 3.46
7458 7542 5.699097 TTTTGGAGGAAAAAGATACGGTG 57.301 39.130 0.00 0.00 30.25 4.94
7508 7592 0.796312 CCCGGAACAGAAATGTCACG 59.204 55.000 0.73 0.00 0.00 4.35
7550 7634 1.811965 CCACATGGTTCGAGCATCAAA 59.188 47.619 0.53 0.00 33.46 2.69
7583 7667 1.021390 CAGAGGACGGACAATGGCAC 61.021 60.000 0.00 0.00 0.00 5.01
7633 7717 8.237811 AGTGTGTAACCTGAATCAAAAAGAAT 57.762 30.769 0.00 0.00 34.36 2.40
7764 7848 1.009829 GATGCTGATTTCGCGAACCT 58.990 50.000 23.33 12.23 0.00 3.50
7790 7874 1.330234 ATGTTGTGCATGCTTCACCA 58.670 45.000 20.33 16.20 36.26 4.17
7833 7917 3.763360 CAGGCACCTCCAAATAATCACAA 59.237 43.478 0.00 0.00 37.29 3.33
7844 7928 0.257328 TGTTGAAACAGGCACCTCCA 59.743 50.000 0.00 0.00 37.29 3.86
7849 7933 2.358898 AGTCACATGTTGAAACAGGCAC 59.641 45.455 7.69 5.35 43.92 5.01
7869 7953 1.936547 GAGGAAAGCATCGCCTAACAG 59.063 52.381 0.00 0.00 30.70 3.16
7877 7961 1.466167 CACAGGTTGAGGAAAGCATCG 59.534 52.381 0.00 0.00 38.81 3.84
7885 7969 6.202331 TCTCCTAATAATCACAGGTTGAGGA 58.798 40.000 0.00 0.00 37.77 3.71
7915 7999 0.739813 GGTACACCGCACACCTGATC 60.740 60.000 0.00 0.00 0.00 2.92
7924 8008 3.004002 CGAATGACTATAGGTACACCGCA 59.996 47.826 4.43 0.00 42.08 5.69
7926 8010 4.781071 GTCGAATGACTATAGGTACACCG 58.219 47.826 4.43 8.69 42.08 4.94
8022 8108 0.333993 AAGATTCAGGCCAGGTGCAT 59.666 50.000 5.01 0.00 43.89 3.96
8059 8145 9.638176 AACAGAGCAAATGATCCTTTTATCTAT 57.362 29.630 6.79 0.00 0.00 1.98
8127 8214 7.201565 GCTTGCTACACTCTCGAATTTCTTAAT 60.202 37.037 0.00 0.00 0.00 1.40
8135 8222 1.550524 TGGCTTGCTACACTCTCGAAT 59.449 47.619 0.00 0.00 0.00 3.34
8136 8223 0.966179 TGGCTTGCTACACTCTCGAA 59.034 50.000 0.00 0.00 0.00 3.71
8139 8226 0.036952 TGCTGGCTTGCTACACTCTC 60.037 55.000 4.89 0.00 0.00 3.20
8140 8227 0.397941 TTGCTGGCTTGCTACACTCT 59.602 50.000 4.89 0.00 0.00 3.24
8160 8249 9.880157 AAAAATGCAAGTCTTGAATATATGCTT 57.120 25.926 16.99 0.00 33.66 3.91
8175 8264 5.499139 TTCACTCTTCGAAAAATGCAAGT 57.501 34.783 0.00 0.00 0.00 3.16
8256 8345 0.163788 CGTGAGGCAAACGATGTGTC 59.836 55.000 6.15 0.00 43.68 3.67
8258 8347 1.126113 GTACGTGAGGCAAACGATGTG 59.874 52.381 17.21 0.00 43.68 3.21
8348 8437 2.689471 GGTATGGCTTGATGATTGTGCA 59.311 45.455 0.00 0.00 0.00 4.57
8426 8515 8.106462 TGAGACCTGTGGATGAATAATTTGTTA 58.894 33.333 0.00 0.00 0.00 2.41
8428 8517 6.375455 GTGAGACCTGTGGATGAATAATTTGT 59.625 38.462 0.00 0.00 0.00 2.83
8430 8519 6.725364 AGTGAGACCTGTGGATGAATAATTT 58.275 36.000 0.00 0.00 0.00 1.82
8462 8551 1.681264 CCCTTCGTTCTTTGCCAAACT 59.319 47.619 0.00 0.00 0.00 2.66
8477 8566 0.108138 AGTGTATGCAGCGACCCTTC 60.108 55.000 0.00 0.00 0.00 3.46
8505 8594 0.743097 GACAGCTGAATGGCATTCCC 59.257 55.000 31.38 23.19 38.50 3.97
8519 8608 7.487189 CCATTCTTGATAATCAACAAAGACAGC 59.513 37.037 0.00 0.00 32.21 4.40
8536 8625 3.942748 GGCGGTAATGTAACCATTCTTGA 59.057 43.478 0.00 0.00 41.50 3.02
8551 8640 3.872511 TCGACTTGAAATAGGCGGTAA 57.127 42.857 0.00 0.00 46.62 2.85
8556 8645 1.604278 GCCCATCGACTTGAAATAGGC 59.396 52.381 0.00 0.00 0.00 3.93
8569 8658 2.539274 CACAACAAACAAAAGCCCATCG 59.461 45.455 0.00 0.00 0.00 3.84
8576 8665 4.734854 CAGACGATCCACAACAAACAAAAG 59.265 41.667 0.00 0.00 0.00 2.27
8613 8702 9.979270 CTATGATGATAAACTTTGTGACAGTTC 57.021 33.333 0.00 0.00 33.12 3.01
8614 8703 8.950210 CCTATGATGATAAACTTTGTGACAGTT 58.050 33.333 0.00 0.00 35.94 3.16
8615 8704 8.321353 TCCTATGATGATAAACTTTGTGACAGT 58.679 33.333 0.00 0.00 0.00 3.55
8616 8705 8.722480 TCCTATGATGATAAACTTTGTGACAG 57.278 34.615 0.00 0.00 0.00 3.51
8617 8706 9.166173 CTTCCTATGATGATAAACTTTGTGACA 57.834 33.333 0.00 0.00 0.00 3.58
8618 8707 9.383519 TCTTCCTATGATGATAAACTTTGTGAC 57.616 33.333 0.00 0.00 0.00 3.67
8619 8708 9.958180 TTCTTCCTATGATGATAAACTTTGTGA 57.042 29.630 0.00 0.00 0.00 3.58
8636 8725 3.200825 CCCCACAGTGTCATTCTTCCTAT 59.799 47.826 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.